Metagenome / Metatranscriptome Family F094000

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094000
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	44 residues
Representative Sequence	MNDKKKLIFGFIDREKPMTWIIAIIISMLVVPLVVTFVLYYGMQ
Number of Associated Samples	77
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	8.49 %
% of genes near scaffold ends (potentially truncated)	31.13 %
% of genes from short scaffolds (< 2000 bps)	77.36 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (78.302 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (51.887 % of family members)
Environment Ontology (ENVO)	Unclassified (66.038 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (95.283 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.22% β-sheet: 0.00% Coil/Unstructured: 52.78%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00210	Ferritin	29.25
PF13640	2OG-FeII_Oxy_3	13.21
PF00313	CSD	12.26
PF04307	YdjM	11.32
PF02915	Rubrerythrin	6.60
PF00535	Glycos_transf_2	2.83
PF12710	HAD	1.89
PF01370	Epimerase	1.89
PF03279	Lip_A_acyltrans	0.94
PF05222	AlaDh_PNT_N	0.94
PF00463	ICL	0.94
PF16166	TIC20	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1988	Membrane-bound metal-dependent hydrolase YbcI, DUF457 family	General function prediction only [R]	11.32
COG1560	Palmitoleoyl-ACP: Kdo2-lipid-IV acyltransferase (lipid A biosynthesis)	Lipid transport and metabolism [I]	0.94
COG2224	Isocitrate lyase	Energy production and conversion [C]	0.94
COG4261	Predicted acyltransferase, LPLAT superfamily	General function prediction only [R]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.25 %
Unclassified	root	N/A	20.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.25 %
Unclassified	root	N/A	20.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.30 %
Unclassified	root	N/A	20.75 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.94 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	42.45 %
Unclassified	root	N/A	20.75 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.89 %
Haptista	clade	All Organisms → cellular organisms → Eukaryota → Haptista	0.94 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	28.30 %
Unclassified	root	N/A	20.75 %
Candidatus Marinimicrobia	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia	1.89 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %
Haptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.75 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	17.92 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	8.49 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1.89 %
Pelagibacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	0.94 %
Prymnesiophyceae	clade	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.75 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	17.92 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	8.49 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1.89 %
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	0.94 %
Prymnesiales	order	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.75 %
unclassified Methylococcaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae	17.92 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	8.49 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1.89 %
Chrysochromulinaceae	family	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae	0.94 %
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.75 %
Methylococcaceae bacterium TMED69	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	17.92 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	8.49 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1.89 %
Chrysochromulina	genus	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina	0.94 %
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559018\|JCVI_READ_1167000	Not Available	951	Open in IMG/M
3300001944\|GOS2251_1000096	All Organisms → cellular organisms → Bacteria	2082	Open in IMG/M
3300001969\|GOS2233_1039512	All Organisms → cellular organisms → Bacteria	1779	Open in IMG/M
3300001971\|GOS2215_10047951	Not Available	1605	Open in IMG/M
3300001972\|GOS2216_10030258	All Organisms → cellular organisms → Bacteria	1795	Open in IMG/M
3300001972\|GOS2216_10154482	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300005239\|Ga0073579_1004622	All Organisms → cellular organisms → Bacteria	2032	Open in IMG/M
3300005606\|Ga0066835_10103936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	911	Open in IMG/M
3300005837\|Ga0078893_10178701	All Organisms → cellular organisms → Bacteria	1637	Open in IMG/M
3300005837\|Ga0078893_10201360	All Organisms → cellular organisms → Bacteria	2694	Open in IMG/M
3300005837\|Ga0078893_10519441	All Organisms → cellular organisms → Bacteria	1829	Open in IMG/M
3300005837\|Ga0078893_11301256	All Organisms → cellular organisms → Bacteria → Proteobacteria	742	Open in IMG/M
3300005960\|Ga0066364_10047053	All Organisms → cellular organisms → Bacteria → Proteobacteria	1389	Open in IMG/M
3300005960\|Ga0066364_10057396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	1268	Open in IMG/M
3300005960\|Ga0066364_10112225	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300005971\|Ga0066370_10264390	Not Available	611	Open in IMG/M
3300006305\|Ga0068468_1056142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	828	Open in IMG/M
3300006345\|Ga0099693_1548984	Not Available	1000	Open in IMG/M
3300006620\|Ga0101444_119809	All Organisms → cellular organisms → Bacteria	2518	Open in IMG/M
3300009481\|Ga0114932_10497703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	717	Open in IMG/M
3300010936\|Ga0137784_1213497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	1119	Open in IMG/M
3300012928\|Ga0163110_10710850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	784	Open in IMG/M
3300012936\|Ga0163109_10049533	All Organisms → cellular organisms → Bacteria	3085	Open in IMG/M
3300012936\|Ga0163109_10506497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	884	Open in IMG/M
3300012936\|Ga0163109_11414868	Not Available	506	Open in IMG/M
3300012954\|Ga0163111_10210644	All Organisms → cellular organisms → Bacteria	1683	Open in IMG/M
3300017786\|Ga0181424_10012719	All Organisms → cellular organisms → Bacteria → Proteobacteria	3639	Open in IMG/M
3300017786\|Ga0181424_10440895	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300017824\|Ga0181552_10038723	All Organisms → cellular organisms → Bacteria → Proteobacteria	2867	Open in IMG/M
3300017949\|Ga0181584_10143015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1608	Open in IMG/M
3300017950\|Ga0181607_10011992	All Organisms → cellular organisms → Bacteria → Proteobacteria	6902	Open in IMG/M
3300018428\|Ga0181568_11141824	All Organisms → cellular organisms → Bacteria → Proteobacteria	587	Open in IMG/M
3300019459\|Ga0181562_10034210	All Organisms → cellular organisms → Bacteria → Proteobacteria	3214	Open in IMG/M
3300020194\|Ga0181597_10249328	Not Available	824	Open in IMG/M
3300020249\|Ga0211635_1020537	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina	1148	Open in IMG/M
3300020266\|Ga0211519_1014828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1899	Open in IMG/M
3300020269\|Ga0211484_1012959	All Organisms → cellular organisms → Bacteria	1757	Open in IMG/M
3300020274\|Ga0211658_1083042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	641	Open in IMG/M
3300020276\|Ga0211509_1058854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	896	Open in IMG/M
3300020281\|Ga0211483_10197777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	667	Open in IMG/M
3300020281\|Ga0211483_10206282	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	653	Open in IMG/M
3300020305\|Ga0211513_1026740	All Organisms → cellular organisms → Bacteria → Proteobacteria	887	Open in IMG/M
3300020305\|Ga0211513_1045846	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300020314\|Ga0211522_1081162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	534	Open in IMG/M
3300020323\|Ga0211673_1004253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3751	Open in IMG/M
3300020323\|Ga0211673_1015703	All Organisms → cellular organisms → Bacteria	1605	Open in IMG/M
3300020323\|Ga0211673_1045038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	829	Open in IMG/M
3300020336\|Ga0211510_1076258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	790	Open in IMG/M
3300020349\|Ga0211511_1021268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1728	Open in IMG/M
3300020365\|Ga0211506_1080984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	918	Open in IMG/M
3300020368\|Ga0211674_10003581	All Organisms → cellular organisms → Bacteria → Proteobacteria	5405	Open in IMG/M
3300020374\|Ga0211477_10023526	All Organisms → cellular organisms → Bacteria	2701	Open in IMG/M
3300020374\|Ga0211477_10065342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	1397	Open in IMG/M
3300020378\|Ga0211527_10065474	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300020393\|Ga0211618_10211319	Not Available	661	Open in IMG/M
3300020393\|Ga0211618_10238208	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	616	Open in IMG/M
3300020394\|Ga0211497_10318479	Not Available	578	Open in IMG/M
3300020397\|Ga0211583_10018261	All Organisms → cellular organisms → Bacteria	3031	Open in IMG/M
3300020397\|Ga0211583_10180499	Not Available	774	Open in IMG/M
3300020397\|Ga0211583_10373617	Not Available	506	Open in IMG/M
3300020403\|Ga0211532_10014508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	4654	Open in IMG/M
3300020404\|Ga0211659_10322178	Not Available	678	Open in IMG/M
3300020404\|Ga0211659_10372456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	622	Open in IMG/M
3300020409\|Ga0211472_10091445	All Organisms → cellular organisms → Bacteria	1197	Open in IMG/M
3300020409\|Ga0211472_10383004	Not Available	568	Open in IMG/M
3300020413\|Ga0211516_10029883	All Organisms → cellular organisms → Bacteria → Proteobacteria	2898	Open in IMG/M
3300020413\|Ga0211516_10097098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	1414	Open in IMG/M
3300020413\|Ga0211516_10124581	Not Available	1217	Open in IMG/M
3300020413\|Ga0211516_10251333	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300020416\|Ga0211644_10002677	All Organisms → cellular organisms → Bacteria → Proteobacteria	8330	Open in IMG/M
3300020419\|Ga0211512_10017133	All Organisms → cellular organisms → Bacteria	3717	Open in IMG/M
3300020419\|Ga0211512_10493162	Not Available	546	Open in IMG/M
3300020420\|Ga0211580_10006011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5653	Open in IMG/M
3300020420\|Ga0211580_10077117	Not Available	1403	Open in IMG/M
3300020421\|Ga0211653_10475532	Not Available	533	Open in IMG/M
3300020424\|Ga0211620_10085758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1357	Open in IMG/M
3300020439\|Ga0211558_10118739	All Organisms → cellular organisms → Bacteria	1284	Open in IMG/M
3300020439\|Ga0211558_10163775	Not Available	1069	Open in IMG/M
3300020439\|Ga0211558_10454853	Not Available	588	Open in IMG/M
3300020442\|Ga0211559_10045428	All Organisms → cellular organisms → Bacteria	2170	Open in IMG/M
3300020448\|Ga0211638_10032398	All Organisms → cellular organisms → Bacteria	2247	Open in IMG/M
3300020455\|Ga0211664_10037001	All Organisms → cellular organisms → Bacteria	2363	Open in IMG/M
3300020456\|Ga0211551_10059773	All Organisms → cellular organisms → Bacteria	1776	Open in IMG/M
3300020456\|Ga0211551_10260309	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300020459\|Ga0211514_10676731	All Organisms → cellular organisms → Bacteria → Proteobacteria	502	Open in IMG/M
3300020461\|Ga0211535_10203473	Not Available	870	Open in IMG/M
3300020463\|Ga0211676_10087491	All Organisms → cellular organisms → Bacteria	2084	Open in IMG/M
3300020468\|Ga0211475_10196278	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300020810\|Ga0181598_1230417	Not Available	692	Open in IMG/M
3300021356\|Ga0213858_10154475	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300021371\|Ga0213863_10359301	Not Available	597	Open in IMG/M
3300021389\|Ga0213868_10348444	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300023105\|Ga0255782_10002849	All Organisms → cellular organisms → Bacteria → Proteobacteria	13435	Open in IMG/M
3300023695\|Ga0228680_1026877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	657	Open in IMG/M
3300024191\|Ga0228636_1016938	All Organisms → cellular organisms → Bacteria	1792	Open in IMG/M
3300024192\|Ga0228637_1004864	All Organisms → cellular organisms → Bacteria	2935	Open in IMG/M
3300024231\|Ga0233399_1068540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	879	Open in IMG/M
3300024242\|Ga0228673_1095922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	529	Open in IMG/M
3300024291\|Ga0228660_1024773	All Organisms → cellular organisms → Bacteria	1134	Open in IMG/M
3300027702\|Ga0209036_1105614	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300028109\|Ga0247582_1123304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	672	Open in IMG/M
3300028109\|Ga0247582_1187789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	524	Open in IMG/M
3300028137\|Ga0256412_1315272	Not Available	575	Open in IMG/M
3300031785\|Ga0310343_10191758	All Organisms → cellular organisms → Bacteria → Proteobacteria	1392	Open in IMG/M
3300031785\|Ga0310343_10823410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	698	Open in IMG/M
3300032073\|Ga0315315_10766696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	880	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified	51.89%
Oceanic	Environmental → Aquatic → Marine → Oceanic	19.81%
Coastal	Environmental → Aquatic → Marine → Coastal	16.04%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	9.43%
Strait	Environmental → Aquatic → Marine → Strait	1.89%
Volcanic	Environmental → Aquatic → Marine → Volcanic	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	51.89%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	16.04%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	12.26%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	7.55%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	7.55%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	51.89%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	11.32%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	8.49%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	7.55%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	4.72%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	4.72%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	1.89%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	1.89%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	1.89%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.94%
Environmental And Host-Associated	Environmental → Aquatic → Marine → Oceanic → Unclassified → Environmental And Host-Associated	0.94%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	0.94%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.94%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	0.94%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559018	Marine microbial communities from the Atlantic Ocean, for comparison studies - Ocean6 (GOS4441574)	Environmental	Open in IMG/M
3300001944	Marine microbial communities from Cabo Marshall, Isabella Island, Equador - GS036	Environmental	Open in IMG/M
3300001969	Marine microbial communities from Yucatan Channel, Mexico - GS017	Environmental	Open in IMG/M
3300001971	Marine microbial communities from the Sargasso Sea - GS000c	Environmental	Open in IMG/M
3300001972	Marine microbial communities from the Sargasso Sea - GS000d	Environmental	Open in IMG/M
3300005239	Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine	Environmental	Open in IMG/M
3300005606	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV84	Environmental	Open in IMG/M
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental	Open in IMG/M
3300005960	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_SurfaceA_ad_6m_LV_A	Environmental	Open in IMG/M
3300005971	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_A	Environmental	Open in IMG/M
3300006305	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m	Environmental	Open in IMG/M
3300006345	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0075m	Environmental	Open in IMG/M
3300006620	Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ10 time point	Environmental	Open in IMG/M
3300009481	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG	Environmental	Open in IMG/M
3300010936	Marine microbial communities from surface seawater of North Pacific Subtropical Gyre ? Stn. ALOHA, 15m	Environmental	Open in IMG/M
3300012928	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG	Environmental	Open in IMG/M
3300012936	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG	Environmental	Open in IMG/M
3300012954	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG	Environmental	Open in IMG/M
3300017786	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18	Environmental	Open in IMG/M
3300017824	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017949	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017950	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)	Environmental	Open in IMG/M
3300018428	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019459	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300020194	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041403US metaG (spades assembly)	Environmental	Open in IMG/M
3300020249	Marine microbial communities from Tara Oceans - TARA_B100000482 (ERX556038-ERR599056)	Environmental	Open in IMG/M
3300020266	Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX556082-ERR598951)	Environmental	Open in IMG/M
3300020269	Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556080-ERR599041)	Environmental	Open in IMG/M
3300020274	Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX556029-ERR598943)	Environmental	Open in IMG/M
3300020276	Marine microbial communities from Tara Oceans - TARA_E500000075 (ERX289007-ERR315858)	Environmental	Open in IMG/M
3300020281	Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556022-ERR599116)	Environmental	Open in IMG/M
3300020305	Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX556024-ERR599003)	Environmental	Open in IMG/M
3300020314	Marine microbial communities from Tara Oceans - TARA_B100000035 (ERX556135-ERR598974)	Environmental	Open in IMG/M
3300020323	Marine microbial communities from Tara Oceans - TARA_B100001027 (ERX555979-ERR599120)	Environmental	Open in IMG/M
3300020336	Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289008-ERR315860)	Environmental	Open in IMG/M
3300020349	Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289006-ERR315859)	Environmental	Open in IMG/M
3300020365	Marine microbial communities from Tara Oceans - TARA_B100000034 (ERX555943-ERR599143)	Environmental	Open in IMG/M
3300020368	Marine microbial communities from Tara Oceans - TARA_B100001027 (ERX556049-ERR599093)	Environmental	Open in IMG/M
3300020374	Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)	Environmental	Open in IMG/M
3300020378	Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)	Environmental	Open in IMG/M
3300020393	Marine microbial communities from Tara Oceans - TARA_B100000161 (ERX556105-ERR599054)	Environmental	Open in IMG/M
3300020394	Marine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026)	Environmental	Open in IMG/M
3300020397	Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556052-ERR599075)	Environmental	Open in IMG/M
3300020403	Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)	Environmental	Open in IMG/M
3300020404	Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)	Environmental	Open in IMG/M
3300020409	Marine microbial communities from Tara Oceans - TARA_A100001403 (ERX555912-ERR599106)	Environmental	Open in IMG/M
3300020413	Marine microbial communities from Tara Oceans - TARA_S200000501 (ERX555962-ERR599092)	Environmental	Open in IMG/M
3300020416	Marine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039)	Environmental	Open in IMG/M
3300020419	Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)	Environmental	Open in IMG/M
3300020420	Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)	Environmental	Open in IMG/M
3300020421	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)	Environmental	Open in IMG/M
3300020424	Marine microbial communities from Tara Oceans - TARA_B100000242 (ERX556056-ERR599138)	Environmental	Open in IMG/M
3300020439	Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)	Environmental	Open in IMG/M
3300020442	Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)	Environmental	Open in IMG/M
3300020448	Marine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)	Environmental	Open in IMG/M
3300020455	Marine microbial communities from Tara Oceans - TARA_B100000965 (ERX555917-ERR599081)	Environmental	Open in IMG/M
3300020456	Marine microbial communities from Tara Oceans - TARA_B100001741 (ERX555984-ERR599123)	Environmental	Open in IMG/M
3300020459	Marine microbial communities from Tara Oceans - TARA_X000000368 (ERX555913-ERR599095)	Environmental	Open in IMG/M
3300020461	Marine microbial communities from Tara Oceans - TARA_B100000401 (ERX556127-ERR599150)	Environmental	Open in IMG/M
3300020463	Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)	Environmental	Open in IMG/M
3300020468	Marine microbial communities from Tara Oceans - TARA_A100000164 (ERX555914-ERR598993)	Environmental	Open in IMG/M
3300020810	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041404US metaG (spades assembly)	Environmental	Open in IMG/M
3300021356	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245	Environmental	Open in IMG/M
3300021371	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497	Environmental	Open in IMG/M
3300021389	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127	Environmental	Open in IMG/M
3300023105	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG	Environmental	Open in IMG/M
3300023695	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 21R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024191	Seawater microbial communities from Monterey Bay, California, United States - 45D	Environmental	Open in IMG/M
3300024192	Seawater microbial communities from Monterey Bay, California, United States - 47D	Environmental	Open in IMG/M
3300024231	Seawater microbial communities from Monterey Bay, California, United States - 43D	Environmental	Open in IMG/M
3300024242	Seawater microbial communities from Monterey Bay, California, United States - 91D	Environmental	Open in IMG/M
3300024291	Seawater microbial communities from Monterey Bay, California, United States - 74D	Environmental	Open in IMG/M
3300027702	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - DCM_A/KNORR_S2/LV (SPAdes)	Environmental	Open in IMG/M
3300028109	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 41R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300028137	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_74 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031785	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-25_MG	Environmental	Open in IMG/M
3300032073	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ocean6-_01366470	2166559018	Environmental And Host-Associated	MKDKKKLIFGFIDREKPMTWIIAIIISMLVVPLVVTFALYYGMQ
GOS2251_10000962	3300001944	Marine	LQYVIHKDKSMNKRKKLILGFIDREKPITWVVAIIISMLIVPLVVTFALYYGMQ*
GOS2233_10395127	3300001969	Marine	MIKKKLILGFIDRDKPITWIVAIIIAMLIVPLTVTFVLYFGMKP*
GOS2215_100479512	3300001971	Marine	MKDKKKLIFGFIDREKPMTWIIAIIISMLVVPLVVTFALYYGMQ*
GOS2216_100302585	3300001972	Marine	MNDKKKLIFGFIDRERPMTWVIAIIISMLVVPLVVTFALYYGMQ*
GOS2216_101544823	3300001972	Marine	MKNDKKLILGFIDREKPGTWIFAIIVAMLTVPLTVTLILY
Ga0073579_10046225	3300005239	Marine	MNGKNKNKIFLGFIDRDKPLTWILAIIIAMLTVPLVVTLVLYYTM*
Ga0066835_101039364	3300005606	Marine	MSNKKKLLFGFIDREKPLTWVFAIIIAMLIIPLVVTFILYYGMQ*
Ga0078893_101787012	3300005837	Marine Surface Water	MMKNGKKLILGFIDREKPGTWIFAIIVAMLTVPLAVTLILYFTMQ*
Ga0078893_102013602	3300005837	Marine Surface Water	MVKNNKRLILGFIDRDKPITWIVAIIIAMLALPLTVTLVLYYGMQ*
Ga0078893_105194414	3300005837	Marine Surface Water	MKNNLILGFINRDKPITWVLAIIVAMLSVPLIVTLLLYYLMR*
Ga0078893_113012562	3300005837	Marine Surface Water	MTKKKLILGFIDREKPLTWVVAIVIAMLIVPLAVTFVLYYGMKP*
Ga0066364_100470531	3300005960	Marine	DKKKLIFGFIDREKPMTWIIAIIISMLVVPLVVTFVLYYGMQ*
Ga0066364_100573963	3300005960	Marine	MNDKKKLIFGFIDREKPMTWIIAIIISMLVIPLVVTFVLYYGMQ*
Ga0066364_101122252	3300005960	Marine	MNDKKKLILGFIDREKPLTWIVAIIISMLVVPLAVTFILYYGMQ*
Ga0066370_102643903	3300005971	Marine	MNDKKKLIFGFIDREKPMTWIIAIIISMLVVPLLVTFALYYGMQ*
Ga0068468_10561422	3300006305	Marine	MNDKKKLIFGFIDREKPMTWIIAIIISMLVVPLVVTFVLYYGMQ*
Ga0099693_15489842	3300006345	Marine	MNNKKKLIFGFIDREKPTTWIIAIIISMLVIPLVVTFVLYYGMQ*
Ga0101444_1198092	3300006620	Marine Surface Water	MFKNNKRLILGFIDRDKPITWIVAIIIAMLALPLTVTLVLYYGMQ*
Ga0114932_104977031	3300009481	Deep Subsurface	FIDREKPGTWIFAIIVAMLTVPLAVTLILYFTMQ*
Ga0137784_12134972	3300010936	Marine	MKDKKKLIFGFIDREKPMTWIIAIIISMLVAPLVVTFALYYGMQ*
Ga0163110_107108502	3300012928	Surface Seawater	MSNHKKLLLGFIDREKPLTWIAAIIIAMLIVPLLVTLILYYTMQ*
Ga0163109_100495332	3300012936	Surface Seawater	MKNKLIFGFIDREKPLTWIGAIIIAMLSIPLIVTLVLYYTMQ*
Ga0163109_105064971	3300012936	Surface Seawater	MNKRKKLIAGFIDREKPITWVIAIIISMLIVPLVVTFALYYGMQ*
Ga0163109_114148683	3300012936	Surface Seawater	MNEKKKIILGFIDRDKPMTWIIAIIISMLIIPLVVTFILYYGMQ*
Ga0163111_102106442	3300012954	Surface Seawater	MSNEKKLIFGFIDREKPLTWIAAIIIAMLSIPLIVTLVLYYTMQ*
Ga0181424_100127193	3300017786	Seawater	MNTLIKKISFEMNSKNKNKIFLGFIDRDRPLTWILAIIIAMLTVPLVVTLVLYYTM
Ga0181424_104408952	3300017786	Seawater	MIKNGKRLILGFIDREKPGTWIFAIIVAMLTVPLAVTLILYFTMQ
Ga0181552_100387234	3300017824	Salt Marsh	MNKKRKAFLGFIERDKPMTWISAIIIFMLVIPLAVTLVLYFSLQ
Ga0181584_101430151	3300017949	Salt Marsh	MNKKRKAFLGFIERDKPMTWISAIIIFMLVIPLAVT
Ga0181607_100119923	3300017950	Salt Marsh	MKKNLILGFINRDKPITWVLAIIVAMLTVPLIVTLLLYYLMR
Ga0181568_111418241	3300018428	Salt Marsh	ITLYMNKKRKAFLGFIERDKPMTWISAIIIFMLVIPLAVTFVLYFSLQ
Ga0181562_100342103	3300019459	Salt Marsh	MNKKRKAFLGFIERDKPMTWISAIIIFMLVIPLAVTFVLYFSLQ
Ga0181597_102493281	3300020194	Salt Marsh	LGFINRDKPITWVLAIIVAMLTVPLIVTLLLYYLMR
Ga0211635_10205373	3300020249	Marine	MTKNNKKLVLGFIDRDKPGTWIFAIILAMLIIPLAVTLILYFTMQ
Ga0211519_10148283	3300020266	Marine	MMKNGKKLILGLIDREKPGTWIFAIIVAMLTVPLAVTLILYFTMQ
Ga0211484_10129595	3300020269	Marine	MNTKKKLLLGFIDREKPLTWVFAIVISMLIVPLVVTFILYYGMK
Ga0211658_10830421	3300020274	Marine	MDRDKKKILLGFIDREKPLTWIFAIIIAMLIIPLVVTFILYYGM
Ga0211509_10588542	3300020276	Marine	MIKNNKRLILGFIDRDKPITWIFAIIIAMLALPLTVTLVLYYGMQ
Ga0211483_101977772	3300020281	Marine	MTKKKLILGFIDREKPLTWVLAIVIAMLIVPLAVTFVLYYGMKP
Ga0211483_102062823	3300020281	Marine	MNDKKKLIFGFIDREKPMTWIVAIIISMLVVPLVVTFVLYYGMQ
Ga0211513_10267401	3300020305	Marine	VSHANTMIKNNKRLILGFIDRDKPLTWIFAIIIAMLALPLTVTLVLYYGMQ
Ga0211513_10458462	3300020305	Marine	MMKNGKKLIFGFIDRDKPGTWIFAIIVAMLTVPLAVTLILYFTMQ
Ga0211522_10811622	3300020314	Marine	MDKRKKLILGFIDREKPITWIIAIIISMLIVPLVVTFAL
Ga0211673_10042533	3300020323	Marine	MNDKKKLIFGFIDREKPITWIIAIIISMLVIPLVVTFVLYYGMQ
Ga0211673_10157033	3300020323	Marine	MNNKKKLLLGFIDREKPLTWVFAIIISMLIVPLVVTFVLYYGMQ
Ga0211673_10450381	3300020323	Marine	KKKLILGFIDRDKPMTWIVAIIIAMLIVPLTVTFVLYFGMKP
Ga0211510_10762582	3300020336	Marine	MIKNNKRLILGFIDRDKPITWIVAIIIAMLALPLSVTILLYYGMQ
Ga0211511_10212682	3300020349	Marine	MKNGKKLILGFIDREKPGTWIFAIIVAMLTVPLAVTLILYFTMQ
Ga0211506_10809843	3300020365	Marine	MDKRKKLILGFIDREKPITWIIAIIISMLIVPLVVTFALYYGMQ
Ga0211674_100035813	3300020368	Marine	MNNKKKLLLGFIDRDKPLTWVFAIIISMLIVPLVVTFILYYGMQ
Ga0211477_100235264	3300020374	Marine	MIKKNKKSVFSFIDRDKPITWIVAIIIAMLILPLTVTFVLYYGMQ
Ga0211477_100653421	3300020374	Marine	MMKNDKKLIFGFIDREKPGTWIFAIIVAMLTVPLAVTLILYFSMQ
Ga0211527_100654741	3300020378	Marine	MTNKKKLVLGFIDREKPITWIIAIIILMLTIPLVVTFVLYY
Ga0211618_102113192	3300020393	Marine	MNDKKKLIFGFIDREKPMTWIIAIIISMLVVPLVVTFVLYYGMQ
Ga0211618_102382082	3300020393	Marine	MNDKKKLIFGFIDREKPMTWIIAIIISMLVVPLLVTFALYYGMQ
Ga0211497_103184792	3300020394	Marine	MKDKKKLIFGFIDREKPMTWIIAIIISMLIVPLVVTFVLYYGMQ
Ga0211583_100182613	3300020397	Marine	MSNKKKLLLGFIDREKPLTWVFAIVIAMLIVPLVVTFILYYGMQ
Ga0211583_101804992	3300020397	Marine	MNDKKKLIFGFIDRDKPMTWIIAIIISMLIVPLVVTFALYYGMK
Ga0211583_103736172	3300020397	Marine	MNDKKKLIFGFIDREKPMTWIIAIIISMLVIPLVVTLVLYYGMQ
Ga0211532_100145088	3300020403	Marine	MNDKKKIILGFIDRDKPITWIIAIIISMLVIPLVVTFILYYGMQ
Ga0211659_103221782	3300020404	Marine	VPSLLLMSKNEKKNILGFIDREKPITWVIAIIVAMLVIPLVVTLSLYYGMQ
Ga0211659_103724562	3300020404	Marine	MDRDKKKILLGFIDREKPLTWIFAIIIAMLIIPLVVTFILYYGMQ
Ga0211472_100914452	3300020409	Marine	MNDKKKLLFGFIDREKPMTWIIAIIISMLVVPLLVTFALYYGMQ
Ga0211472_103830042	3300020409	Marine	ICLRTASASKMNDKKKLIFGFIDREKPMTWIVAIIISMLVVPLVVTFVLYYGMQ
Ga0211516_100298833	3300020413	Marine	MSRNDNKLIFGFINRDKPITWIIAIIVFMLITPLAVTLVLYYVMT
Ga0211516_100970982	3300020413	Marine	MMKDDKKLIFWFIDREKPGTWIFAIIVAMLTVPLAVTLILYFTMQ
Ga0211516_101245811	3300020413	Marine	MFKNNKRLIFGFIDRDKPITWIIAIIIAMLALPLTVTLVLYYGMQ
Ga0211516_102513332	3300020413	Marine	MKNDKKLIFGFIDREKPGTWIFAIIVAMLTVPLAVTLILYFTMQ
Ga0211644_100026771	3300020416	Marine	MSSKQKKTILGFIDREKPLTWVFAIIVAMLVVPLAVTLVLYYGMQ
Ga0211512_100171333	3300020419	Marine	MIKNNKRLILGFIDRDKPLTWIFAIIIAMLALPLTVTLVLYYGMQ
Ga0211512_104931622	3300020419	Marine	MIKNNKRLILGFIDRDKPITWIFAIIIAMLALPLTVTLVLYYGMK
Ga0211580_100060115	3300020420	Marine	MNNKKKLIFGFIDREKPMTWIIAIIISMLAIPLVVTLALYYGMQ
Ga0211580_100771172	3300020420	Marine	MNNKKKLLLGFIDREKPLTWVLAIIISMLIVPLVVTFVLYYGMQ
Ga0211653_104755322	3300020421	Marine	FMDRDKKKILLGFIDREKPLTWIFAIIIAMLTIPLVVTFILYYGMQ
Ga0211620_100857581	3300020424	Marine	MSNKKKLLFGFIDRDKPLTWVLAIIIAMLIIPLVVTFILYYGMQ
Ga0211558_101187393	3300020439	Marine	MNDKKKLIFGFIDREKPMTWIIAIIISMLVVPLLV
Ga0211558_101637751	3300020439	Marine	FWTTSASKMNDKKKLILGFIDREKPLTWIVAIIISMLVVPLAVTFILYYGMQ
Ga0211558_104548532	3300020439	Marine	ASEMNDKKKLIFGFIDREKPMTWIIAIIISMLVVPLLVTFALYYGMQ
Ga0211559_100454285	3300020442	Marine	TSVYMNKKRKVFLGFIERDKPMTWITAIIIFMLIIPLTVTFILYFSLQ
Ga0211638_100323986	3300020448	Marine	MNNKKKLLLGFIDRDKPLTWVFAIIISMLAVPLVVTFILYYGMQ
Ga0211664_100370016	3300020455	Marine	MSNEKKLIFGFIDREKPLTWIAAIIIAMLSIPLIVTLVLYYTMQ
Ga0211551_100597732	3300020456	Marine	MNDKKKLILGFIDREKPLTWIVAIIISMLVVPLAVTFILYYGMQ
Ga0211551_102603092	3300020456	Marine	MDIIDYRMMNKKKLIFGFIDREKPLTWIIAIIIAMLIIPLVVTFTLYYGMKP
Ga0211514_106767312	3300020459	Marine	LILGFIDRDKPLTWIFAIIIAMLALPLTVTLVLYYGMQ
Ga0211535_102034731	3300020461	Marine	SASKMNDKKKLIFGFIDREKPMTWIIAIIISMLVVPLVVTFVLYYGMQ
Ga0211676_100874912	3300020463	Marine	VPSLLLMSKNGKKNILGFIDREKPLTWVIAIIVAMLVIPLVVTLSLYYGMR
Ga0211475_101962783	3300020468	Marine	MKNDKKLIFGFIDREKPGTWIFAIIVAMLTVPLAVTLILYFTMQXKF
Ga0181598_12304172	3300020810	Salt Marsh	VIMKKNLILGFINRDKPITWVLAIIVAMLTVPLIVTLLLYYLMR
Ga0213858_101544752	3300021356	Seawater	MNKKRKAFLGFIERDKPMTWISAIIVFMLVIPLAVTFILYFSLQ
Ga0213863_103593011	3300021371	Seawater	TMKKKNILGFINRDKPATWVIAIIIAMLVVPLVVTLLLYYLMK
Ga0213868_103484442	3300021389	Seawater	MNGKNKNKVFLGFIDRDKPLTWIFAIIIAMLTVPLVVTLVLYYTM
Ga0255782_100028491	3300023105	Salt Marsh	MNKKRKAFLGFIERDKPMTWISAIIIFMLVIPLAVTLVL
Ga0228680_10268771	3300023695	Seawater	MNDKSKNKIFLGFIDRDKPLTWILAIIIAMLTVPLVVTLVLYYT
Ga0228636_10169382	3300024191	Seawater	MNDKSKNKIFLGFIDRDKPLTWILAIIIAMLTVPLVVTLVLYYTM
Ga0228637_10048644	3300024192	Seawater	MKKNLIFGFINRDKPITWILAIIVAMLSVPLVVTLLLYYLMR
Ga0233399_10685401	3300024231	Seawater	MKKNLIFGFINRDKPITWILAIIVAMLSVPLVVTL
Ga0228673_10959221	3300024242	Seawater	MKKNLILGFINRDKPITWILAIIVAMLSVPLVVTLLLYYLMRXIYS
Ga0228660_10247731	3300024291	Seawater	MNDKSKNKIFLGFIDRDKPLTWILAIIIAMLTVPLVVTLVLYY
Ga0209036_11056142	3300027702	Marine	MMKNGKKLILGFIDREKPGTWIFAIIVAMLTVPLAVTLILYFTMQ
Ga0247582_11233041	3300028109	Seawater	MNDKSKNKIFLGFIDRDKPLTWILAIIIAMLTVPL
Ga0247582_11877891	3300028109	Seawater	KILFDMNDKSKNKIFLGFIDRDKPLTWILAIIIAMLTVPLVVTLVLYYTM
Ga0256412_13152721	3300028137	Seawater	KNLIFGFINRDKPITWILAIIVAMLSVPLVVTLLLYYLMR
Ga0310343_101917581	3300031785	Seawater	KMNDKKKLIFGFIDRERPMTWVIAIIISMLVVPLVVTFALYYGMQ
Ga0310343_108234103	3300031785	Seawater	MNNKKKLIFGFIDREKPMTWIIAIIIFMLVVPLLVTFALYYGMQ
Ga0315315_107666961	3300032073	Seawater	MMKNGKKLILGFIDREKPGTWIFAIIVAMLTVPLAVT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094000

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences