Metagenome / Metatranscriptome Family F094019

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F094019
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	67 residues
Representative Sequence	VPPFVGVAVNVTLVPEQIVLPGLAAMLTDGVNVVAPTLIVIPGDVAVVGLAQPSDEVITTVITSPLANALFE
Number of Associated Samples	66
Number of Associated Scaffolds	78

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	23.23 %
% of genes near scaffold ends (potentially truncated)	29.25 %
% of genes from short scaffolds (< 2000 bps)	93.40 %
Associated GOLD sequencing projects	60
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (70.755 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (25.472 % of family members)
Environment Ontology (ENVO)	Unclassified (37.736 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.340 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.00% β-sheet: 8.00% Coil/Unstructured: 89.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.16
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.16
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 78 Family Scaffolds
PF02368	Big_2	1.28
PF11617	Cu-binding_MopE	1.28

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.75 %
All Organisms	root	All Organisms	29.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.75 %
cellular organisms	root	All Organisms → cellular organisms	29.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.75 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	29.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.75 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	28.30 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.75 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	28.30 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.75 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	28.30 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.75 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	16.98 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	6.60 %
Chitinophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia	0.94 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	0.94 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.75 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	16.98 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	6.60 %
Chitinophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales	0.94 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	0.94 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.75 %
Cyclobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae	16.98 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	6.60 %
unclassified Flavobacteriales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales	0.94 %
Chitinophagaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	0.94 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.75 %
Algoriphagus	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus	16.98 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	6.60 %
unclassified Chitinophagaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae	0.94 %
Flavobacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	0.94 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.75 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	6.60 %
Algoriphagus aquaeductus	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus → Algoriphagus aquaeductus	3.77 %
Chitinophagaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	0.94 %
Flavobacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	0.94 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.94 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005332\|Ga0066388_108833653	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	500	Open in IMG/M
3300005617\|Ga0068859_101364938	Not Available	781	Open in IMG/M
3300005617\|Ga0068859_101364938	Not Available	781	Open in IMG/M
3300005719\|Ga0068861_101633124	Not Available	636	Open in IMG/M
3300006032\|Ga0066696_10600740	Not Available	715	Open in IMG/M
3300006058\|Ga0075432_10539547	Not Available	525	Open in IMG/M
3300006237\|Ga0097621_101243854	Not Available	702	Open in IMG/M
3300006797\|Ga0066659_11425516	Not Available	579	Open in IMG/M
3300006800\|Ga0066660_11072466	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	641	Open in IMG/M
3300006844\|Ga0075428_102515023	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus → Algoriphagus aquaeductus	527	Open in IMG/M
3300006844\|Ga0075428_102515023	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus → Algoriphagus aquaeductus	527	Open in IMG/M
3300006853\|Ga0075420_101775521	Not Available	528	Open in IMG/M
3300006853\|Ga0075420_101775521	Not Available	528	Open in IMG/M
3300006894\|Ga0079215_10584442	Not Available	723	Open in IMG/M
3300006894\|Ga0079215_10584442	Not Available	723	Open in IMG/M
3300006918\|Ga0079216_11153732	Not Available	617	Open in IMG/M
3300006918\|Ga0079216_11153732	Not Available	617	Open in IMG/M
3300007004\|Ga0079218_11748245	Not Available	693	Open in IMG/M
3300007004\|Ga0079218_12120165	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus	649	Open in IMG/M
3300007004\|Ga0079218_13294435	Not Available	547	Open in IMG/M
3300007004\|Ga0079218_13294435	Not Available	547	Open in IMG/M
3300009094\|Ga0111539_11082544	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus	931	Open in IMG/M
3300009094\|Ga0111539_11978483	Not Available	676	Open in IMG/M
3300009094\|Ga0111539_11978483	Not Available	676	Open in IMG/M
3300009100\|Ga0075418_11914367	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus	645	Open in IMG/M
3300009100\|Ga0075418_12819871	Not Available	531	Open in IMG/M
3300009162\|Ga0075423_12016882	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus → Algoriphagus aquaeductus	625	Open in IMG/M
3300009537\|Ga0129283_10072887	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1384	Open in IMG/M
3300009553\|Ga0105249_13073071	Not Available	536	Open in IMG/M
3300012883\|Ga0157281_1026953	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	768	Open in IMG/M
3300012908\|Ga0157286_10429293	Not Available	520	Open in IMG/M
3300012908\|Ga0157286_10429293	Not Available	520	Open in IMG/M
3300012909\|Ga0157290_10212212	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus → Algoriphagus aquaeductus	665	Open in IMG/M
3300012912\|Ga0157306_10232603	Not Available	639	Open in IMG/M
3300012913\|Ga0157298_10209026	Not Available	632	Open in IMG/M
3300012913\|Ga0157298_10209026	Not Available	632	Open in IMG/M
3300012913\|Ga0157298_10424849	Not Available	513	Open in IMG/M
3300012914\|Ga0157297_10533458	Not Available	500	Open in IMG/M
3300013297\|Ga0157378_11191351	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	801	Open in IMG/M
3300013297\|Ga0157378_11191351	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	801	Open in IMG/M
3300015200\|Ga0173480_10635041	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	660	Open in IMG/M
3300015200\|Ga0173480_10955821	Not Available	561	Open in IMG/M
3300015200\|Ga0173480_11157045	Not Available	520	Open in IMG/M
3300015200\|Ga0173480_11157045	Not Available	520	Open in IMG/M
3300015201\|Ga0173478_10070323	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus	1208	Open in IMG/M
3300015201\|Ga0173478_10070323	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus	1208	Open in IMG/M
3300018083\|Ga0184628_10544475	Not Available	594	Open in IMG/M
3300018469\|Ga0190270_10981951	Not Available	869	Open in IMG/M
3300018469\|Ga0190270_11830664	Not Available	663	Open in IMG/M
3300018481\|Ga0190271_13448861	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus	530	Open in IMG/M
3300019361\|Ga0173482_10725280	Not Available	517	Open in IMG/M
3300019362\|Ga0173479_10279156	Not Available	750	Open in IMG/M
3300021339\|Ga0193706_1145538	Not Available	645	Open in IMG/M
3300021339\|Ga0193706_1145538	Not Available	645	Open in IMG/M
3300022737\|Ga0247747_1045711	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus	541	Open in IMG/M
3300022880\|Ga0247792_1079503	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	651	Open in IMG/M
3300022880\|Ga0247792_1109005	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus	574	Open in IMG/M
3300022880\|Ga0247792_1109005	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus	574	Open in IMG/M
3300022886\|Ga0247746_1103659	Not Available	697	Open in IMG/M
3300022899\|Ga0247795_1015281	Not Available	1227	Open in IMG/M
3300022899\|Ga0247795_1015281	Not Available	1227	Open in IMG/M
3300023057\|Ga0247797_1032799	Not Available	708	Open in IMG/M
3300023057\|Ga0247797_1032799	Not Available	708	Open in IMG/M
3300023062\|Ga0247791_1074850	Not Available	555	Open in IMG/M
3300023064\|Ga0247801_1034137	Not Available	736	Open in IMG/M
3300023067\|Ga0247743_1080767	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus	502	Open in IMG/M
3300025907\|Ga0207645_10934022	Not Available	589	Open in IMG/M
3300025907\|Ga0207645_10934022	Not Available	589	Open in IMG/M
3300025934\|Ga0207686_11277724	Not Available	602	Open in IMG/M
3300025981\|Ga0207640_11843939	Not Available	547	Open in IMG/M
3300025985\|Ga0210117_1052920	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	677	Open in IMG/M
3300026035\|Ga0207703_11770061	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	594	Open in IMG/M
3300026088\|Ga0207641_11539404	Not Available	667	Open in IMG/M
3300026088\|Ga0207641_11539404	Not Available	667	Open in IMG/M
3300026088\|Ga0207641_12391522	Not Available	527	Open in IMG/M
3300026116\|Ga0207674_12305515	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus	500	Open in IMG/M
3300026118\|Ga0207675_101832008	Not Available	626	Open in IMG/M
3300026550\|Ga0209474_10363320	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	796	Open in IMG/M
3300027691\|Ga0209485_1330353	Not Available	512	Open in IMG/M
3300027886\|Ga0209486_10288441	Not Available	962	Open in IMG/M
3300027886\|Ga0209486_10288441	Not Available	962	Open in IMG/M
3300027886\|Ga0209486_10288441	Not Available	962	Open in IMG/M
3300027992\|Ga0247750_1022083	Not Available	650	Open in IMG/M
3300028380\|Ga0268265_10791201	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus	924	Open in IMG/M
3300028380\|Ga0268265_10791201	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus	924	Open in IMG/M
3300028380\|Ga0268265_10791201	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus	924	Open in IMG/M
3300028380\|Ga0268265_11692042	Not Available	638	Open in IMG/M
3300028380\|Ga0268265_11692042	Not Available	638	Open in IMG/M
3300028381\|Ga0268264_10464112	Not Available	1229	Open in IMG/M
3300028381\|Ga0268264_10464112	Not Available	1229	Open in IMG/M
3300031093\|Ga0308197_10347232	Not Available	563	Open in IMG/M
3300031226\|Ga0307497_10540109	Not Available	581	Open in IMG/M
3300031226\|Ga0307497_10540109	Not Available	581	Open in IMG/M
3300031908\|Ga0310900_10621035	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	857	Open in IMG/M
3300031944\|Ga0310884_10707504	Not Available	610	Open in IMG/M
3300031944\|Ga0310884_10707504	Not Available	610	Open in IMG/M
3300032012\|Ga0310902_10637156	Not Available	712	Open in IMG/M
3300032012\|Ga0310902_10637156	Not Available	712	Open in IMG/M
3300032122\|Ga0310895_10673910	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	536	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	63.21%
Host-Associated	Host-Associated	36.79%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.43%
Plants	Host-Associated → Plants	36.79%
Aquatic	Environmental → Aquatic	3.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.43%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.98%
Freshwater	Environmental → Aquatic → Freshwater	0.94%
Marine	Environmental → Aquatic → Marine	0.94%
Sediment	Environmental → Aquatic → Sediment	0.94%
Unclassified	Environmental → Aquatic → Unclassified	0.94%
Roots	Host-Associated → Plants → Roots	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.49%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	16.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.89%
Lake	Environmental → Aquatic → Freshwater → Lake	0.94%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified	0.94%
Loam	Environmental → Terrestrial → Soil → Loam	0.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.47%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	23.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	16.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.98%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.66%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.89%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.94%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified → Unclassified	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.94%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	25.47%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	15.09%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	13.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	12.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	11.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.89%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.94%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Beach Aquifer Porewater	Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Beach Aquifer Porewater	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009537	Microbial community of beach aquifer porewater from Cape Shores, Lewes, Delaware, USA - D-2W	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300012883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300020009	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s1	Environmental	Open in IMG/M
3300021339	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c1	Environmental	Open in IMG/M
3300022737	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S094-311B-5	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300022886	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S079-202R-5	Environmental	Open in IMG/M
3300022899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S016-104C-6	Environmental	Open in IMG/M
3300023057	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6	Environmental	Open in IMG/M
3300023062	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S081-202R-4	Environmental	Open in IMG/M
3300023064	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S001-104B-6	Environmental	Open in IMG/M
3300023067	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S221-509R-5	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025985	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027992	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S125-311R-5	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066388_1088336532	3300005332	Tropical Forest Soil	VKVTLVPEQIVLPGDAAILTDGTRFAFTVMVIALEVTGLGLAQLIDDVITQVITSPFTKEEF*
Ga0068859_1013649382	3300005617	Switchgrass Rhizosphere	VPPFVGVAVNETLVPAQIVLPGLAAMLTEGVTDPVTTIVIAFDIAVVGLAQASDEVITTVTTSPFTNPEL*
Ga0068859_1013649383	3300005617	Switchgrass Rhizosphere	VPPLVGVAVNVTFVPAQIVLLGLAAMLTDGVTDPVTIIVIAFDVAVVGLAQASDDVITTVITSPFTKPAFR*
Ga0068864_1025265621	3300005618	Switchgrass Rhizosphere	VPPLAGVAVKMTLVPEQIVLPGLAAMLTDGATAAVTVIVISLEEAVIGLAQVRDEVITQ
Ga0068861_1016331242	3300005719	Switchgrass Rhizosphere	LVGAAVNVTLVPEQIVLPGLALILTDGATDPVTIIVIPDDVAVVEFTQVSDDVITTVITSPFTKPLFE*
Ga0066696_106007403	3300006032	Soil	VPPLVGVAVKVTLVPVHIELPGAAAMLTDGATVPVTAMVIEFDVAVVGLAHAS
Ga0075432_105395472	3300006058	Populus Rhizosphere	VNVTLIPEQIVLPGLALMLTDGATDPVTIIMIPVDVAVAEVTQVREDVITTLTTSPFIKPLFE*
Ga0097621_1012438541	3300006237	Miscanthus Rhizosphere	VPPLVGEAVNTTFVPVQIVLSGLAAMLTDGVTVAVTVISIVFEVAVVGLAQASDEVITT
Ga0066659_114255163	3300006797	Soil	LVGVAVKVTLVPVHIALPGAAAMLTDGATVPVTAMVIEFDVAIDGLAHASDDVITTVTTS
Ga0066660_110724661	3300006800	Soil	VPPLVGIAVNVTLVPVHIVLPGAAAMLTDGATAPVTAMVIEFDVAVVGLEHASDDVITTATTSPLA
Ga0075428_1025150231	3300006844	Populus Rhizosphere	VPPLVGVAVNVTLVPVQIVLPGFAAILTDGVTVGFTVIVMALDVAAAGLAHANEDVIITVTTSPFTNEAF*
Ga0075428_1025150232	3300006844	Populus Rhizosphere	AAVNVTFVPVHIVFPGFALMLTDGATVDVTTIVIPDDVAVVGLAHASVDVITTVVTSPLTNEAF*
Ga0075420_1017755211	3300006853	Populus Rhizosphere	VNTTFVPVQIVLPGLAAMLTDGTTVAVTAIVIVLEVAVAGFAHASDEVITTLTWSPFTNVAFE*
Ga0075420_1017755212	3300006853	Populus Rhizosphere	VNTTFVPVQIVFPGLAAMLTDGATVAVTVIVIVLEVAVVGLAQANDEVITTLTWSPFTNAAFE*
Ga0079215_105844421	3300006894	Agricultural Soil	VGVAVNVTLVPAQIVLPGLATILTDGVTVDVTTIVIALDVAVEGLAHASDDVITTVTISPFTNPAF*
Ga0079215_105844422	3300006894	Agricultural Soil	VGVAVNVTLVPAQIVLPGLAAMLTNGVTVDVTTIVIAFDVAVVGFAQASDDVITTVTISPFTNPAF*
Ga0079216_111537321	3300006918	Agricultural Soil	VPPFVGIAVNMTLVPEQIVLPGLAAMLTDGVTADPTIIVIPVDVAVVGLAQASDEFIVTVITSPSANALFEYELLFVPTLFPFSFH*
Ga0079216_111537322	3300006918	Agricultural Soil	GIAVNMTLVPEQIVLPGLAAMLTDGVTVDPTVIVIPLEVTVAGLAQPSVEVITTVTTSPFINALFE*
Ga0079218_117482451	3300007004	Agricultural Soil	LVGVAVNVTLVPAQIVLPGLAAMLTDGVTVDVTTIVSALDVAVEGLAQASDDVITTVTISPLTNPAF*
Ga0079218_121201653	3300007004	Agricultural Soil	VPPFVGVAVKVTLLPEQIALPGLAVMLTDGVTVAPTIIVIPGDVAVVGLAQPNDDVITTVIISPLTNAAFE*
Ga0079218_132944351	3300007004	Agricultural Soil	VPPFVGDAVNVTFVPAQIVLPGLALTFTDGATVSVTVIVIPFDVAVVGLAHPSDDVITTVTTSPFTIVLFE*
Ga0079218_132944352	3300007004	Agricultural Soil	FVGVAVNVTLVPAQIVLPGLALILTAGTTVAPTVIVIAFDVALAGLAQPSEDVITTVTTSPFTNVLFE*
Ga0111539_110825442	3300009094	Populus Rhizosphere	VPPFVGVAVNVTLVPEQIVLPGLAAMLTDGVNVVAPTLIVIPGDVAVVGLAQPSDEVITTVITSPLANALFE*
Ga0111539_119784831	3300009094	Populus Rhizosphere	VPPFVGVAVNRTLVPEQIVLPGLAVTLTDGTIVDPTVIVIPVAVAVTGIAQVNDEVITTVTTSPLANALFECELLFVPTLLPFRFH*
Ga0111539_119784832	3300009094	Populus Rhizosphere	VNVTLVPEQIVLPGLAVMLTDGTAVDATVIVIGDDVAVVGLAHAIDEVITTVTISPLANALFE*
Ga0075418_112658981	3300009100	Populus Rhizosphere	LVGVAVNVTLVPAQIVPDGDAAIVTDGVIFAFTVIVIVLDVAVAGLAHGAFDVITQLTWSPF
Ga0075418_119143671	3300009100	Populus Rhizosphere	VPPLVGVAVNVTLVPEQIVFPGLAAILTDGVTVDVTIIVIPVDVAFAGEAQANDEVITTVTI
Ga0075418_128198712	3300009100	Populus Rhizosphere	VVLVPAQIVLPGFAAMLTDGVTADPTIIVIPAAVAVAGLAQANDEFITTVTISPFANALFE*
Ga0114129_112072032	3300009147	Populus Rhizosphere	VGVAVNVTDVPAQIVLPGAAAIVTDGVTLEETTIVIVLDVAVADVAQAAFDVITQLTWSPFTNVALV*
Ga0114129_112072033	3300009147	Populus Rhizosphere	LVGVAVNVTLVPAQIVPDGDAAIVTDGVTFAFTVIVVALDVTDAGLAHGAFDVITHVTTLPLAKAALV*
Ga0075423_120168823	3300009162	Populus Rhizosphere	VPPFVGVAVNTTFVPVQIVLPGLAAMLTDGTTVAVTVIVIVFEDAVAGLAQANDEVITTLTWSP
Ga0129283_100728874	3300009537	Beach Aquifer Porewater	VLPPFVGVAVKVTLFPAQMVFPGVAAIDTEGVTVPVTDMVIVLDIAVVGLTQFALEVNTTET*
Ga0105249_130730711	3300009553	Switchgrass Rhizosphere	VPPFVGVAVNVTLVPGHIVLPGLAAMFTDGATVDTTLVVIPVAVAVVGFAQLNEEVMTTVITSPFANALYE*
Ga0157281_10269532	3300012883	Soil	VKVTLVPAQIVLPGLAVTLTDGTIVDPTVIVIPVAVAVTGLAQVNDEVITTVTTSPLANALFE*
Ga0157286_104292931	3300012908	Soil	VPPLVGVAVNVTLVPEQIELPGLAAMLTDGDRVAPTIIVIPVDVAVVGLAQPSEEVITTVITSPLVNALFE*
Ga0157286_104292932	3300012908	Soil	VNVTLVPEQIVLPGLAAMLTDGVNVVDPTLIVIPGDVAVVGLAQPIEEVIT
Ga0157290_102122121	3300012909	Soil	VVPPFTGIAVNMTLVPGQIVVPGLAAMLTDGTNVDPTIIVIPVDVAVAGLTQASEEVITTVTTSPLANA
Ga0157306_102326032	3300012912	Soil	LVGFVENVTPVPAQIVLPGLAPILTDGTTDPVIIIVISFDVAVVGLAQARDDVITTVTISPFSHVAF*
Ga0157298_102090262	3300012913	Soil	VPPFVGVAVNKTLVTEQTELPGFAAMLTDGVPADPTLIVIPVDVAEVGLAQAIEEVITTVTTSPLANALFE*
Ga0157298_102090263	3300012913	Soil	VPPLVGVAVNVTLVPEQIELPGLAAMLTDGVRVAPTIIVIPVDVAVVGLAQPSEEVITTVITSPL
Ga0157298_104248492	3300012913	Soil	VNVTLVPEQIVLPGLAAMLTDGVNVVDPTLIVIPGDVAVVGLAQPIEEVITTVITSPLTKALFE*
Ga0157297_105334581	3300012914	Soil	VPPFVGVAVNKTLVPEQTELPGFAAMLTDGVPADPTLIVIPVDVAEVGLAQAIEEVITTVTTSPLANALFE*
Ga0157378_111913511	3300013297	Miscanthus Rhizosphere	VPPFVGVAVKVTFVPVQIVLPGDAAMLTDGITFAVTIIVIAFDVTGFGLAQVSDDVITQVTISPFDNDEF*
Ga0157378_111913512	3300013297	Miscanthus Rhizosphere	VPPFVGVAVKVTFVPAQIVLPGDAIILTDGVTNGFTTIVIELDVTGLGFAHVSDDVITQVTTSPFTNVEF*
Ga0173480_106350412	3300015200	Soil	VPPFVGIAVKVTLEPAQIGFPGLAATLTDGIIVDPTVIVIPVAVAVTGLAQVNDEVITTVTTSPLANPLFE*
Ga0173480_109558211	3300015200	Soil	VPPFVGVAVKVTLVPAQIALPELAPMLTDGTTVDPTVIIIPVEVAVVGLAQASDDVITTVTASPFASALFE*
Ga0173480_111570451	3300015200	Soil	LLFVPTLFPFSFHWYDGVPPFVGVAVKVTLVPEQIVLPGLELMLTDGTVVGATVIIIPADVAVVGLAQASDDVIITVITSPFANELFE*
Ga0173480_111570452	3300015200	Soil	TLVPVQIVLPGFALMLTDGTTVDPTIIVIPVDVVVVGLAHTSDEVIITVTTSPFANELFE
Ga0173478_100703233	3300015201	Soil	VNVTLVPEQIVLPGLAAMLTDGVNVVDPTLIVIPGDVAVVGLAQPIEEVITTVIASPLTKALFE*
Ga0173478_100703234	3300015201	Soil	VPPLVGVAVNVTLVPEQIELPGLAAMLTDGVRVAPTIIVIPVDVAVVGLAQPSEEVITTVITSPLVNALFE*
Ga0184628_105444752	3300018083	Groundwater Sediment	VPPFVGVAVNVTLVPVQIVIPGSALMITDGATVDETVIVIPFEVAVVGLAQASDDVITTVTTSPFANALFE
Ga0190270_109819512	3300018469	Soil	VPPFVGVAVKVTLVPAQIVFPGFAAILTDGATDPVIAIVIALDVAVVGLAQASDEVMTTVTTSPFAKALFE
Ga0190270_118306642	3300018469	Soil	VPPFVGVAVNVTFVPVQIVLPGFALMLTDGATVPVTTIAIKFDVAVVGLAQASDEVITTVTISPFINALFE
Ga0190271_134488612	3300018481	Soil	LVGVAVKFTLVPAQIDPSGFAAMLTDGATAAVTVIVIPVEVAVVGLAQARDDVITTVTTSPLANVLFEYVLLLVPTLLPFNFH
Ga0173482_107252801	3300019361	Soil	VPPFVGVAVNVTLVPAQIVLPGLATMLTDGTAVDATVIVIPVDVAVAGLAQASEEVNTTVTTVPFANALFE
Ga0173479_102791561	3300019362	Soil	VNTTFVPSQIVLPGLAAMLTDGTTVAVTAIIIVLEVAVAGFAHASDEVITTLTWSPFTSAAFE
Ga0193722_10949642	3300019877	Soil	VGVAVNVTLVPAQIVVADAEMLTDGATGEVTVIVMALEVAVEGLAQPDEEVMTTVTTLLLARLAF
Ga0193740_10642722	3300020009	Soil	VPPFNGCAVNITFVPAQMVLPVFTAILTVGATVEVTTMLMPVDVAVVGLAQARDDVITTVTTSPFSN
Ga0193706_11455381	3300021339	Soil	VEVKVTLLPAQIVLPGFAAMLTDGATVDVTTIVIELEVTGFGFVQLSDDVISTDTIFPFANELF
Ga0193706_11455382	3300021339	Soil	LVGVAVNVTLVPEQIVLPGFAAILTDGITVDVTVIVIEFDVTGFGLAQPMDEVISTVIIFPFVNELFW
Ga0247747_10457111	3300022737	Soil	VPAQIVLPGLAVTLTDGTIVDPTVIVIPVAVAVTGLAQVNDEVITTVTTSPLVNALFE
Ga0247792_10795032	3300022880	Soil	VPPFVGAAVNVTLVPEQIVLPGLAVILTDGTTVDTTSIVIPGDVAVVGLAQASDEVITTVIR
Ga0247792_11090051	3300022880	Soil	VPPFVGVAVNKTLVPEQMELPGFAAMLTDGVPADPTLIVIPVDVAEVGLAQAIEEVITTV
Ga0247792_11090052	3300022880	Soil	VVPPFTGIAVNVTLVPAQIVVPGLAAMLTDGTIVDPTIIVIPGDVAVAGLTQASEEVITTVTTSPLVNALFE
Ga0247746_11036593	3300022886	Soil	VPPLVGVAVNVTLVPVQIVLPGFALMLTDGTTVAETVIVMPVDVALVGLAQAREDVITTVTISPFANALRE
Ga0247795_10152811	3300022899	Soil	VPPLVGVAVNVTLVPEQIELPGLAAMLTDGDRVAPTIIVIPVDVAVVGLAQPSEEVITTVITSPLVNAL
Ga0247795_10152812	3300022899	Soil	VPPFVGVAVNKTLVPEQMELPGFAAMLTDGVPADPTLIVIPVDVAEVGLAQAIEEVITTVTTSPLANALFE
Ga0247797_10327992	3300023057	Soil	LLGVAVNVTLVPAQIVLPGLAPILTDGTTGPVTIIVISFDVAVVGLAQASDDVITTVTISPFCNVAF
Ga0247797_10327993	3300023057	Soil	LVGVAVNVTNVPVQMVLPGLAAMLTDGVTAAVTTIVISFDVAVVGLAQASDDVTTTVTISPFCSVAF
Ga0247791_10748502	3300023062	Soil	VPPFVGVAVNKTLVPEQTELPGFAAMLTDGVPADPTLIVIPVDVAEVGLAQAIEEVITTVTTSPLANALFE
Ga0247801_10341373	3300023064	Soil	VVPPFTGIAVNVTLVPAQIVVPGFAAMLTDGTIVDPTIIVIPGDVAVAGLTQASEEVITTVTTSP
Ga0247743_10807671	3300023067	Soil	GVPPFVGVAVNVTLVPEQIVLPGLAVMPTDGTTVDTISIVIPGDVAVVGLAQASDEVITTVIRLPFVSVLFE
Ga0207645_109340221	3300025907	Miscanthus Rhizosphere	VPPLVDVAVNVTFVPEQIVLPGFALMLTDGITDPVTIIVIALDVAVVGLAQASDDVITTVTTSPFTNPEF
Ga0207645_109340222	3300025907	Miscanthus Rhizosphere	VGVAVNETLVPAQIVLPGLAAMLTEGVTDPVTTIVIAFDIAVVGLAQASDEVITTVTTSPFTNPEL
Ga0207686_112777241	3300025934	Miscanthus Rhizosphere	VNATLVPVQIVLPGLAPILTDGVTVDVTNIVIPVDVAFAGEAQANDEVITTVTISPFAKELFE
Ga0207640_118439392	3300025981	Corn Rhizosphere	VNTTLVPVQIVLPGLAPILTDGVTVDVTIIVIPVDVAFAGEAQANDEVITTVTISPFAKELFE
Ga0210117_10529203	3300025985	Natural And Restored Wetlands	VAPPLVGIAVNVTLIPAQIVLPGPALMLTDGVTLPVTVIVIAFDVAVLTVTQLSEEVITQLTTSPFTNDEF
Ga0207703_117700611	3300026035	Switchgrass Rhizosphere	LVGAAVNVTLVPEHIVLPGLALMLTDGAIDPVITIVIPVDVAVVGFAQASDDVITTVITSPFTKALFE
Ga0207641_115394041	3300026088	Switchgrass Rhizosphere	VPPFVGVAVNKTLVPEQMELPRFAAMLTDGVPADPTLIVIPVDVAEVGLAQAIEEVITTVTTSPLANALFE
Ga0207641_115394042	3300026088	Switchgrass Rhizosphere	VVPPFTGIAVNVTLVPAQIVVPGFAAMLTDGTIVDPTIIVIPGDVAVAGLTQASEEVITTVTTSPLVNALFE
Ga0207641_123915221	3300026088	Switchgrass Rhizosphere	VNTTFVPVQLVLPGLAPILTDGVTVDVTIIVISVDVAFAGEAQAKDEVITTVTISPFAKELFE
Ga0207674_123055151	3300026116	Corn Rhizosphere	VPPFVCVAVNVTLAPAQIVLPGFAATLTDGVTVDPTIIVIRGDVAVIGLAHVALLVITTATESPLANVLFE
Ga0207675_1018320082	3300026118	Switchgrass Rhizosphere	LVGVVVNVTLVPEQMVLPGLALMLTDGATDPVMIIVIPADVAVVGFAQASDEVITTVITSPLTKALFEYVLLFVPTLFPFSFH
Ga0209474_103633203	3300026550	Soil	VPPLVGVAVNVTLVAMHIVLPGAAAMLTDGATVPVTAIVIEFDVAVIGLEHASDDVI
Ga0209485_13303532	3300027691	Agricultural Soil	MPPFVGVAVNVTLVPAQIVLPGLALMVTDGTTVGVTVIVIPFDAAVVGLAQPREDVITTVITSPFTNALFE
Ga0209486_102884411	3300027886	Agricultural Soil	VPPFVGVAVNVTFVPAQVVLPGLALILTPGTTVDPTVIVIAFDVALAGFAQPSDEVITTVTTSPFTNA
Ga0209486_102884412	3300027886	Agricultural Soil	MPPFVGVAVNVTFVPEQIVLPGLALILTAGTTVDPTVIVIAFDVALAGFAQPSDEVIMTVTTSPFTNALFE
Ga0209486_102884413	3300027886	Agricultural Soil	VPPFVGVAVNVTLVPVQIVLPGLALILTAGTTVDPTVIVIAFDVALAGFAQPSDEVIMTVTTSPFTNALFE
Ga0247750_10220833	3300027992	Soil	VPPFVGVAVNVTLVPVQIVLPGFALMLTDGTTVAETVIVMPVDVAIVGLAQARDDVITTVTTSPFANALFE
Ga0268265_107912012	3300028380	Switchgrass Rhizosphere	VPPFVGVAVNVTLVPEQIELPGFAAMLTDGVPADPTLSVIPVDVAEVGLAQAIEEVITTVTTSPLANALFE
Ga0268265_107912013	3300028380	Switchgrass Rhizosphere	VPPFVGVAVNVTLVPEQIVLPGLAAMLTDGVNVVDPTLIVIPGDVAVVGLAQPIEEVITTVITSPLTKALFE
Ga0268265_107912014	3300028380	Switchgrass Rhizosphere	DGVPPLVGVAVKMTLVPGQIVLPGLAVIVTDGVTVDPTLIVIPGEVAVGGLAQPSEEVIVTVTTSPFANALFE
Ga0268265_116920421	3300028380	Switchgrass Rhizosphere	AVNVTLVPVQIVLPGFALMVTDGTTVAETVIVMPVDVAIVGLAQARDDVITTVTTSPFANALFE
Ga0268265_116920422	3300028380	Switchgrass Rhizosphere	VPPLVGVAVNITLVPVQIVLPGFALMLTDGTTVAETVIVMPVDVAIAGLAQAREDVITTVTISPFANALLE
Ga0268264_104641121	3300028381	Switchgrass Rhizosphere	VPPFVGVAVNMTLVPEQIVLPGLALMFTDGVTDPVMIIVILFEVAVFGFAHPNDEVITTLTTSPFTNPAF
Ga0268264_104641122	3300028381	Switchgrass Rhizosphere	VNVTLVPEQIVLPGSAAILTDGVTVPATTIVILFEVAVAGFAQPSDDVITTLTTSPFTSPAF
Ga0308197_103472321	3300031093	Soil	LVGVAVKVTLVPVHIVLPGAAAILTDGATVPVTTMVIAFELAVVGFAQASDDVITTVTTSPLTSVEL
Ga0307497_105401091	3300031226	Soil	VPPLVGVAVNVTLVPAQIVLPGLATILTDGVTDPVTIIVIAFDVAVVGLAQASDEVITTVTTSPFNKPAF
Ga0307497_105401092	3300031226	Soil	VPPFDGDAVNVTNVPAQIVLPGLATILTDGVTDPVTIIVIAFDVAVVGLAQASDEVITTVTTSPFNKPAF
Ga0310900_106210351	3300031908	Soil	VPPFVAVAVNMTLVPEQMELPGLAAMLTDGAPADPTLIVMAVDVAEVGLAQAIEEVITTV
Ga0310884_107075041	3300031944	Soil	LVGVAVKVTLVPAQIVLPGFAAMLTEGATAPVITIVIELDVAVVGLAQASDEVITTVITSPFAKALFE
Ga0310884_107075042	3300031944	Soil	LVGVAVKVTLVPAQIVLPGLAAMLTEGATAPVITIVIAFDVAVVGLAQASDDVITTVITSPFAKAL
Ga0310902_106371561	3300032012	Soil	TTFVPVQITLPGLAAMLTDGATVAVTNIVIVFEVAVAGLAQASDEVITTLTWSPFTNAAF
Ga0310902_106371563	3300032012	Soil	VPPFVGVAVNTTFVPVQIVLPGLAAMLTDGTTVAVTVIVIVFDVAVAGLAQASDEVITALTWSPFTN
Ga0310895_106739101	3300032122	Soil	VPPFVGVAVNVTLVPAQIVLPGFAAMLTDGTTEPVIAIVIPFEVAVVGLAQANEDVIT
Ga0315287_128211011	3300032397	Sediment	VPPPLVGVAVKVTLVPAQIAPAGLAAMLTDGATAAVTDIAISLEVAVAGLAQASDDVITQVILSPFTKAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094019

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences