Metagenome / Metatranscriptome Family F094031

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094031
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	49 residues
Representative Sequence	MKIENLGKDLDTETMTEVKGGIALTGQVVPTNVQSNELLQSFNIAS
Number of Associated Samples	63
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	99.06 %
% of genes near scaffold ends (potentially truncated)	95.28 %
% of genes from short scaffolds (< 2000 bps)	83.96 %
Associated GOLD sequencing projects	48
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.22

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (68.868 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere (28.302 % of family members)
Environment Ontology (ENVO)	Unclassified (87.736 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (88.679 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 5.41% β-sheet: 5.41% Coil/Unstructured: 89.19%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.22
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.22
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF03466	LysR_substrate	4.72
PF01551	Peptidase_M23	3.77
PF00106	adh_short	2.83
PF08447	PAS_3	2.83
PF01266	DAO	1.89
PF11845	DUF3365	1.89
PF00069	Pkinase	1.89
PF14329	DUF4386	0.94
PF13186	SPASM	0.94
PF00561	Abhydrolase_1	0.94
PF07238	PilZ	0.94
PF13508	Acetyltransf_7	0.94
PF01810	LysE	0.94
PF02798	GST_N	0.94
PF04542	Sigma70_r2	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	7.55
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.94
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.94
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.94
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
All Organisms	root	All Organisms	31.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
cellular organisms	root	All Organisms → cellular organisms	31.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	31.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	22.64 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6.60 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.89 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.94 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.89 %
Oceanospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae	0.94 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.89 %
Marinomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Marinomonas	0.94 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.89 %
Marinomonas spartinae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Marinomonas → Marinomonas spartinae	0.94 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005175\|Ga0066673_10414658	Not Available	788	Open in IMG/M
3300005260\|Ga0074072_1067642	Not Available	994	Open in IMG/M
3300005335\|Ga0070666_10053235	Not Available	2729	Open in IMG/M
3300005335\|Ga0070666_10079252	All Organisms → cellular organisms → Bacteria → Proteobacteria	2243	Open in IMG/M
3300005335\|Ga0070666_10783840	Not Available	701	Open in IMG/M
3300005367\|Ga0070667_100060588	All Organisms → cellular organisms → Bacteria → Proteobacteria	3202	Open in IMG/M
3300005455\|Ga0070663_100611607	Not Available	918	Open in IMG/M
3300005539\|Ga0068853_100094343	All Organisms → cellular organisms → Bacteria → Acidobacteria	2636	Open in IMG/M
3300005539\|Ga0068853_101127466	Not Available	757	Open in IMG/M
3300005539\|Ga0068853_102366527	Not Available	514	Open in IMG/M
3300005544\|Ga0070686_101896969	Not Available	508	Open in IMG/M
3300005548\|Ga0070665_100141997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2404	Open in IMG/M
3300005563\|Ga0068855_102127232	Not Available	565	Open in IMG/M
3300005578\|Ga0068854_101316276	Not Available	651	Open in IMG/M
3300005614\|Ga0068856_100046385	All Organisms → cellular organisms → Bacteria	4280	Open in IMG/M
3300005614\|Ga0068856_100650774	Not Available	1074	Open in IMG/M
3300005614\|Ga0068856_100933380	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300005616\|Ga0068852_101224048	Not Available	772	Open in IMG/M
3300005618\|Ga0068864_102112472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	570	Open in IMG/M
3300005618\|Ga0068864_102713266	Not Available	501	Open in IMG/M
3300005834\|Ga0068851_11079945	Not Available	509	Open in IMG/M
3300005841\|Ga0068863_100127425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2429	Open in IMG/M
3300005841\|Ga0068863_101178787	Not Available	771	Open in IMG/M
3300006237\|Ga0097621_100609274	Not Available	999	Open in IMG/M
3300006358\|Ga0068871_101221155	Not Available	705	Open in IMG/M
3300009092\|Ga0105250_10504620	Not Available	549	Open in IMG/M
3300009093\|Ga0105240_11045954	Not Available	871	Open in IMG/M
3300009093\|Ga0105240_11190840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	807	Open in IMG/M
3300009093\|Ga0105240_11371529	Not Available	744	Open in IMG/M
3300009093\|Ga0105240_11837441	Not Available	631	Open in IMG/M
3300009093\|Ga0105240_12317388	Not Available	556	Open in IMG/M
3300009101\|Ga0105247_10426220	Not Available	951	Open in IMG/M
3300009174\|Ga0105241_10095802	All Organisms → cellular organisms → Bacteria → Proteobacteria	2350	Open in IMG/M
3300009174\|Ga0105241_10643293	Not Available	962	Open in IMG/M
3300009174\|Ga0105241_12110144	Not Available	557	Open in IMG/M
3300009177\|Ga0105248_13195362	Not Available	521	Open in IMG/M
3300009545\|Ga0105237_10230607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1852	Open in IMG/M
3300009545\|Ga0105237_11450490	Not Available	693	Open in IMG/M
3300009545\|Ga0105237_12270612	Not Available	552	Open in IMG/M
3300009551\|Ga0105238_10102377	All Organisms → cellular organisms → Bacteria → Proteobacteria	2845	Open in IMG/M
3300009551\|Ga0105238_12855303	Not Available	519	Open in IMG/M
3300009551\|Ga0105238_12860641	Not Available	519	Open in IMG/M
3300009553\|Ga0105249_10600612	All Organisms → cellular organisms → Bacteria → Proteobacteria	1155	Open in IMG/M
3300010375\|Ga0105239_10075247	All Organisms → cellular organisms → Bacteria → Proteobacteria	3712	Open in IMG/M
3300010375\|Ga0105239_11299968	Not Available	839	Open in IMG/M
3300010375\|Ga0105239_11925503	Not Available	686	Open in IMG/M
3300010375\|Ga0105239_12475055	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300010375\|Ga0105239_12751265	Not Available	574	Open in IMG/M
3300010375\|Ga0105239_13047061	Not Available	546	Open in IMG/M
3300010397\|Ga0134124_12052779	Not Available	609	Open in IMG/M
3300012206\|Ga0137380_10729161	Not Available	859	Open in IMG/M
3300012357\|Ga0137384_10441510	Not Available	1072	Open in IMG/M
3300012359\|Ga0137385_10528406	Not Available	997	Open in IMG/M
3300012685\|Ga0137397_11063573	Not Available	592	Open in IMG/M
3300013296\|Ga0157374_10340024	All Organisms → cellular organisms → Bacteria	1490	Open in IMG/M
3300013296\|Ga0157374_11561900	Not Available	684	Open in IMG/M
3300013306\|Ga0163162_12397658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	606	Open in IMG/M
3300013307\|Ga0157372_12359770	Not Available	611	Open in IMG/M
3300014325\|Ga0163163_10239472	All Organisms → cellular organisms → Bacteria → Proteobacteria	1864	Open in IMG/M
3300014325\|Ga0163163_10287308	All Organisms → cellular organisms → Bacteria → Proteobacteria	1697	Open in IMG/M
3300014325\|Ga0163163_11597078	Not Available	713	Open in IMG/M
3300014325\|Ga0163163_13120227	Not Available	517	Open in IMG/M
3300014745\|Ga0157377_11588553	Not Available	523	Open in IMG/M
3300014968\|Ga0157379_11010922	Not Available	793	Open in IMG/M
3300015051\|Ga0137414_1232552	Not Available	2128	Open in IMG/M
3300015242\|Ga0137412_10039552	All Organisms → cellular organisms → Bacteria	3851	Open in IMG/M
3300018482\|Ga0066669_11722420	Not Available	576	Open in IMG/M
3300020140\|Ga0179590_1117038	Not Available	722	Open in IMG/M
3300020140\|Ga0179590_1120797	Not Available	710	Open in IMG/M
3300021168\|Ga0210406_11156693	Not Available	566	Open in IMG/M
3300021168\|Ga0210406_11362990	Not Available	508	Open in IMG/M
3300024288\|Ga0179589_10541392	Not Available	542	Open in IMG/M
3300025903\|Ga0207680_10065496	All Organisms → cellular organisms → Bacteria → Proteobacteria	2231	Open in IMG/M
3300025903\|Ga0207680_10182014	Not Available	1422	Open in IMG/M
3300025903\|Ga0207680_10217612	All Organisms → cellular organisms → Bacteria → Proteobacteria	1308	Open in IMG/M
3300025913\|Ga0207695_10237252	Not Available	1726	Open in IMG/M
3300025913\|Ga0207695_10807350	Not Available	818	Open in IMG/M
3300025914\|Ga0207671_10220353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Marinomonas → Marinomonas spartinae	1486	Open in IMG/M
3300025914\|Ga0207671_10810839	Not Available	742	Open in IMG/M
3300025914\|Ga0207671_11095818	Not Available	626	Open in IMG/M
3300025924\|Ga0207694_10095902	All Organisms → cellular organisms → Bacteria → Proteobacteria	2345	Open in IMG/M
3300025924\|Ga0207694_10140062	Not Available	1945	Open in IMG/M
3300025924\|Ga0207694_10286316	Not Available	1354	Open in IMG/M
3300025924\|Ga0207694_11450047	Not Available	580	Open in IMG/M
3300025924\|Ga0207694_11722939	Not Available	527	Open in IMG/M
3300025949\|Ga0207667_11338888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	691	Open in IMG/M
3300025949\|Ga0207667_11381610	Not Available	678	Open in IMG/M
3300025961\|Ga0207712_10048292	All Organisms → cellular organisms → Bacteria	2960	Open in IMG/M
3300025961\|Ga0207712_10790178	Not Available	834	Open in IMG/M
3300025986\|Ga0207658_10502571	All Organisms → cellular organisms → Bacteria	1080	Open in IMG/M
3300025986\|Ga0207658_10772013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	871	Open in IMG/M
3300026035\|Ga0207703_11591087	Not Available	629	Open in IMG/M
3300026041\|Ga0207639_10475451	Not Available	1138	Open in IMG/M
3300026041\|Ga0207639_11942885	Not Available	549	Open in IMG/M
3300026088\|Ga0207641_11484483	Not Available	679	Open in IMG/M
3300026095\|Ga0207676_11787043	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300026095\|Ga0207676_12273918	Not Available	540	Open in IMG/M
3300026142\|Ga0207698_11579651	Not Available	671	Open in IMG/M
3300027727\|Ga0209328_10132671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	760	Open in IMG/M
3300028379\|Ga0268266_10069828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3045	Open in IMG/M
3300028786\|Ga0307517_10183819	All Organisms → cellular organisms → Bacteria → Proteobacteria	1343	Open in IMG/M
3300031093\|Ga0308197_10361310	Not Available	556	Open in IMG/M
3300031507\|Ga0307509_10637037	Not Available	736	Open in IMG/M
3300032782\|Ga0335082_11035633	Not Available	686	Open in IMG/M
3300033180\|Ga0307510_10000006	All Organisms → cellular organisms → Bacteria → Proteobacteria	566474	Open in IMG/M
3300034644\|Ga0370548_125735	Not Available	539	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	81.13%
Environmental	Environmental	18.87%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	81.13%
Terrestrial	Environmental → Terrestrial	18.87%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	50.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	22.64%
Soil	Environmental → Terrestrial → Soil	18.87%
Roots	Host-Associated → Plants → Roots	8.49%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	38.68%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	22.64%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	15.09%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.32%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	5.66%
Loam	Environmental → Terrestrial → Soil → Loam	2.83%
Unclassified	Host-Associated → Plants → Roots → Unclassified	2.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	38.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	22.64%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.32%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	5.66%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.94%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	28.30%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	14.15%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	10.38%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.49%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	7.55%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	5.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	3.77%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005260	Microbial communities on the surface of kaolinite enhanced biochar from soil with fertiliser in Sydney, Australia	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028786	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM	Host-Associated	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031507	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM	Host-Associated	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300033180	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM	Host-Associated	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066673_104146582	3300005175	Soil	MKIENLSKDLDTTAMTEVTGGTALTGQVVPTSVQSNALEQAFNIKS
Ga0074072_10676421	3300005260	Soil	MKIENLSKDLDAEAMTEVKGGFALTGQVVPTNVQDNELLQKFNVGSNG
Ga0070666_100532356	3300005335	Switchgrass Rhizosphere	MKIENLSQELDTQDMTEVRGGVALTGQAVPTSVQSNELAQKF
Ga0070666_100792521	3300005335	Switchgrass Rhizosphere	MKIENLSKELDTETMTEVKGGIALTGQVVPTNVQSNELLQSFNIASNGPVAI
Ga0070666_107838402	3300005335	Switchgrass Rhizosphere	MKIENLGKELDTETMTEVKGGIALTGQVVPTNVQSNELLQSFNIAS
Ga0070667_1000605884	3300005367	Switchgrass Rhizosphere	MKIENLGKELDTETMTEVKGGIALTGQVVPTNVQSNELLQSFNIASNGPVAIAN
Ga0070663_1006116071	3300005455	Corn Rhizosphere	MKIENLSQELDTQDMTEVRGGVALTGQAVPTSVQSNELAQKFNI
Ga0068853_1000943434	3300005539	Corn Rhizosphere	MKIENLSKDLDTVGMTEVRGGTALTGQVVPTNVQSNALQQAFNIQSNGPVAIANDADQSN
Ga0068853_1011274661	3300005539	Corn Rhizosphere	MKIENLGKDLDTETMTEVKGGIALTGQVVPTNVQSNELLQSF
Ga0068853_1023665271	3300005539	Corn Rhizosphere	MKIENLSQELEPQDMTEVRGGVALTGQAVPTSVQSNELAQKFNIASCAPVAIGNSADQSNYSSQS
Ga0070686_1018969691	3300005544	Switchgrass Rhizosphere	MKIENLSKDLDTEAMTEVKGGVALTAQVVPTNVQSNELLQSFNVGSHGPVAIGND
Ga0070665_1001419975	3300005548	Switchgrass Rhizosphere	MKIENLNKDLDTAEQKEVTGGTALTGQVVPTNVQSNELLQKFNVGSAGPVALGNDATQDNYSSQ
Ga0068855_1021272322	3300005563	Corn Rhizosphere	MKIENLTKDLDAETMTEVKGGIALTAQVVPTNVQSNELLQSFNV
Ga0068854_1013162761	3300005578	Corn Rhizosphere	MKIENLSQELDTQDMTEVRGGVALTGQAVPTSVQSNELAQKFNIASCAPVAIGNSADQSNYSSQ
Ga0068856_1000463855	3300005614	Corn Rhizosphere	MKIENLGKELDTETMTEVKGGIALTGQVVPTNVQSNELLQSFNIASN
Ga0068856_1006507743	3300005614	Corn Rhizosphere	MEIENLNKDLDTEAQKQVKGGVALTGQVVPTNVQDNALEQAFHIAAGGPVAIAN
Ga0068856_1009333801	3300005614	Corn Rhizosphere	MKIENLSKELDTETMTEVKGGIALTGQVVPTNVQSNELLQSFNIASN
Ga0068852_1012240481	3300005616	Corn Rhizosphere	MKIENLSKDLDTEAMTEVRGGVALTGQVVPTNVQSNALEQAFNI
Ga0068864_1021124721	3300005618	Switchgrass Rhizosphere	MKIENLGKELDTETMAEVKGGIALTGQVVPTNVQSNALEQAFNIAANGPVAIANDA
Ga0068864_1027132662	3300005618	Switchgrass Rhizosphere	MKIENLSKDLDTTAMTEVTGGTALTGQVVPTNVQSNALEQAF
Ga0068851_110799451	3300005834	Corn Rhizosphere	MEIENLNKDLDTEAQKQVKGGVALTGQVVPTNVQDNAL
Ga0068863_1001274253	3300005841	Switchgrass Rhizosphere	MKIENLSKDLDAEAMTEVKGGIALTGQVVPTNVQDNELLQNFNVG
Ga0068863_1011787872	3300005841	Switchgrass Rhizosphere	MKIENLSKELDTETMTEVKGGIALTGQVVPTNVQSNE
Ga0097621_1006092741	3300006237	Miscanthus Rhizosphere	MEIENLNKDLDTEAQKQVKGGVALTGQVVPTNVQDN
Ga0068871_1012211551	3300006358	Miscanthus Rhizosphere	MEIENLNKDLDTEAQKQVKGGVALTGQVVPTNVQDNALEQAFHIAAGGPVAIANDANQSNDS
Ga0105250_105046201	3300009092	Switchgrass Rhizosphere	MKIENLSKDLDAASMTEVSGGTALTGQVVPTNVQSNE
Ga0105240_110459542	3300009093	Corn Rhizosphere	MKIENLSKDLDAEAMTEVKGGIALTGQVVPTNVQDN
Ga0105240_111908402	3300009093	Corn Rhizosphere	MKIENLGKELDTATMTEVKGGVALTGQVVPTNVQSNALEQAFNIAANGPVAIANDASQSNDSDQD
Ga0105240_113715292	3300009093	Corn Rhizosphere	MKIENLSKDLDTATMTEVHGGLALTGQVVPTNVQEN
Ga0105240_118374411	3300009093	Corn Rhizosphere	MEIENLNKDLDTEAQKAVKGGTALTGQVVPTNVQSNALEQAFHIASGGPGC*
Ga0105240_123173881	3300009093	Corn Rhizosphere	MKIENLSEAPDTETMTEVKGGIALTGQVVPTNVQSNELLQSFNIASNGPVAIANDGSQSNYSDQD
Ga0105247_104262203	3300009101	Switchgrass Rhizosphere	MKIENLSKELDTESMTEVRGGVALTGQVVPTNVQSNALEQAFNI
Ga0105241_100958024	3300009174	Corn Rhizosphere	MKIENLGKELDTETMTEVKGGIALTGQVVPTNVQSNE
Ga0105241_106432932	3300009174	Corn Rhizosphere	MKIENLGKDLDTATMTEVKGGVALTGQVVPTNVQSN
Ga0105241_121101442	3300009174	Corn Rhizosphere	MKIENLSQELEPQDMTEVRGGVALTGQAVPTSVQSNELAQKFNIAS
Ga0105248_131953621	3300009177	Switchgrass Rhizosphere	MEIENLNKDLDTEAQKQVKGGVALTGQVVPTNVQDNALEQAFHIAAG
Ga0105237_102306073	3300009545	Corn Rhizosphere	MKIENLTQDLDTETMTEVKGGIALTAQVVPTNVQS
Ga0105237_114504901	3300009545	Corn Rhizosphere	MEIENLNKDLDTEAQKQVKGGVALTGQVVPTNVQDNALEQAFHIAAGGPVAIAND
Ga0105237_122706121	3300009545	Corn Rhizosphere	MKIENLGKDLDTETMTEVKGGIALTGQVVPTNVQSNELLQSFNIAS
Ga0105238_101023774	3300009551	Corn Rhizosphere	MKIENLSKDLDTEAMTEVRGGVALTGQVVPTNVQSNALEQAFNIKANGPVAIANDADQSNDSDQ
Ga0105238_128553032	3300009551	Corn Rhizosphere	MKIENLSQELDTQDMTEVRGGVALTGQTVPTSVQSNELAQK
Ga0105238_128606411	3300009551	Corn Rhizosphere	MKIENLTKDLDTETMTEVKGGIALTAQVVPTNVQSNELLQSFNVASHGPVAIGNDADQS
Ga0105249_106006123	3300009553	Switchgrass Rhizosphere	MKIENLGKELDTETMTEVKGGIALTGQVVPTNVQSNELLQSF
Ga0105239_100752471	3300010375	Corn Rhizosphere	MKIENLGKDLDTATMTEVKGGIALTGQVVPTNVQSNEALQSFNIASNGPVAIANDGSQSNYSDQD
Ga0105239_112999682	3300010375	Corn Rhizosphere	MKIENLGKELDTETMAEVKGGIALTGQVVPTNVQSNALEQAFNIAANG
Ga0105239_119255031	3300010375	Corn Rhizosphere	MKIENLSKDLDAEAMTEVKGGIALTGQVVPTNVQDNELLQNF
Ga0105239_124750551	3300010375	Corn Rhizosphere	MKIENLGKDLDTATMIEVKGGIALTGQVVPTNVQSNALEQAFN
Ga0105239_127512652	3300010375	Corn Rhizosphere	MKIENLSKDLDTEAMTEVRGGVALTGQVVPTNVQSNALE
Ga0105239_130470612	3300010375	Corn Rhizosphere	MEIENLNKDLDTEAQKQVKGGVALTGQVVPTNVQDNALEQAFHIA
Ga0134124_120527791	3300010397	Terrestrial Soil	MKIENLGKELDTETMAEVKGGIALTGQVVPTNVQSNALEQAFNIAANGPVAIANDGNQSNDSD*
Ga0137380_107291612	3300012206	Vadose Zone Soil	MKIENLSKDLDTETMTEVKGGLAQTGQVVPTSVQSNALL*
Ga0137384_104415101	3300012357	Vadose Zone Soil	MKIENLSKDLDTEAMTEVKGGTALTGQVVPTSLESNELLQNFDITSKAPV
Ga0137385_105284063	3300012359	Vadose Zone Soil	MKIENLSKDLDTETMTEVRGGLALTGQVVPTNVQSNELLQSFHIASNGPVAIANDADQS
Ga0137397_110635731	3300012685	Vadose Zone Soil	MKIENLSKELDTETMTEVRGGVALTGQVVPTNVQSNALLQSFHIASNGP
Ga0157374_103400242	3300013296	Miscanthus Rhizosphere	MKIENLGKELDTETMAEVKGGIALTGQVVPTNVQS
Ga0157374_115619001	3300013296	Miscanthus Rhizosphere	MKIENLSKDLDAEAMTEVKGGIALTGQVVPTNVQDNELLQNFNV
Ga0163162_123976581	3300013306	Switchgrass Rhizosphere	MKIENLSKDLDTEAMTEVTGGTALTGQVVPTNVQSNELLQSFNVASHGPVAIGNSA
Ga0157372_123597701	3300013307	Corn Rhizosphere	MKIENLGKDLDTATMTEVKGGIALTGQVVPTNVQSNEALQSFNIASNGPVAI
Ga0163163_102394723	3300014325	Switchgrass Rhizosphere	MKIENLSKELDTETMTEVKGGIALTGQVVPTNVQSNELLQSFNI
Ga0163163_102873081	3300014325	Switchgrass Rhizosphere	MKIENLTKDLDTETMTEVKGGIALTAQVVPTNVQSNELL
Ga0163163_115970781	3300014325	Switchgrass Rhizosphere	MEIENLNKDLDTEAQKQVKGGVALTGQVVPTNVQDNELLQNFNVAAHGPVAIGNDAD
Ga0163163_131202272	3300014325	Switchgrass Rhizosphere	MKIENLSKDLDTTAMTEVTGGTALTGQVVPTNVQSNALEQAFNIKANGPVAIANDA
Ga0157377_115885531	3300014745	Miscanthus Rhizosphere	MKIENLSKELDTESMTEVRGGVALTGQVVPTNVQSN
Ga0157379_110109221	3300014968	Switchgrass Rhizosphere	MKIENLSKDLDTTGMTEVRGGTALTGQVVPTSVQDNAMLQSFHVASAAPVAIGNDADQ
Ga0137414_12325522	3300015051	Vadose Zone Soil	MEIENLNKDLDTEAQKNVKGGLALTGQVVPTNVQSNALEQAFNVASKGPVAIANDGSQSNESSRTA*
Ga0137412_100395525	3300015242	Vadose Zone Soil	MKIENLSKDLDTEAMTEVAGGVALTGQVVPTSVQSNALEQAFNIRSNGPVAIANDA
Ga0066669_117224202	3300018482	Grasslands Soil	MKIENLSKDLDTTAMTEVHGGTALTGQVVPTSVQD
Ga0179590_11170382	3300020140	Vadose Zone Soil	MKIENLSKELDTRDMTDVHGGTALTGQVVPTNVQCNAAGQTFNVGSCAPVAIDNSAEQS
Ga0179590_11207971	3300020140	Vadose Zone Soil	MEIENLNKDLDTEAQKAVKGGTALTGQVVPTNVQSNALEQAFHIASGGPV
Ga0210406_111566932	3300021168	Soil	MKIENLSKDLDTEAMTEVTGGTALTGQVVPTNVQSNALE
Ga0210406_113629901	3300021168	Soil	MKIENLSKELDTQDMTDVQGGTALTGQVVPTNVQCNAAGQTFNVGSCAPVAIGN
Ga0179589_105413922	3300024288	Vadose Zone Soil	MKIENLSKELDTETMTEVRGGVALTGQVVPTNVQSNELLQNFDIASHGPVAIA
Ga0207680_100654961	3300025903	Switchgrass Rhizosphere	MKIENLSKELDTETMTEVKGGIALTGQVVPTNVQSNELLQSFNIASNGPVA
Ga0207680_101820144	3300025903	Switchgrass Rhizosphere	MKIENLSQELDTQDMTEVRGGVALTGQAVPTSVQSNELAQKFNITSCAPVAIGNSAD
Ga0207680_102176123	3300025903	Switchgrass Rhizosphere	MKIENLGKELDTETMTEVKGGIALTGQVVPTNVQSNELLQSFNIASNG
Ga0207695_102372521	3300025913	Corn Rhizosphere	MKIENLSKDLDTTGMTEVRGGTALTGQVVPTSVQDNAMLQSFHVA
Ga0207695_108073501	3300025913	Corn Rhizosphere	MKIENLSKELDTETMTEVRGGLALTGQVVPTNVQENQLEQAFNISSKGP
Ga0207671_102203531	3300025914	Corn Rhizosphere	MKIENLGKELDTETMTEVKGGIALTGQVVPTNVQSNELLQSFNIASNGPVA
Ga0207671_108108391	3300025914	Corn Rhizosphere	MEIENLNKDLDTEAQKQVKGGVALTGQVVPTNVQDNALEQAFHIAAGGPVAIANDA
Ga0207671_110958181	3300025914	Corn Rhizosphere	MKIENLTQDLDTETMTEVKGGIALTAQVVPTNVQSNELLQSFNVASHGPVAIGNDADQSN
Ga0207694_100959021	3300025924	Corn Rhizosphere	MKIENLTKDLDTETMTEVKGGVALTAQVVPTNVQSNELLQSFNVGSHGPV
Ga0207694_101400621	3300025924	Corn Rhizosphere	MKIENLSKELDTQEMTDVQGGTALTGQVVPTSVQGNALEQKFNVGSCAPV
Ga0207694_102863162	3300025924	Corn Rhizosphere	MKIENLTKDLDTETMTEVKGGIALTAQVVPTNVQSNELLQSFN
Ga0207694_114500472	3300025924	Corn Rhizosphere	MKIENLSKDLDTTGMTEVRGGTALTGQVVPTSVQDNAMLQSFHVASTAPVAIGNDADQ
Ga0207694_117229392	3300025924	Corn Rhizosphere	MKIENLSKELDTETMTEVKGGIALTGQVVPTNVQSNEL
Ga0207667_113388881	3300025949	Corn Rhizosphere	MKIENLGKELDTETMAEVKGGIALTGQVVPTNVQSNALEQAFNIAAN
Ga0207667_113816102	3300025949	Corn Rhizosphere	MKIENLSQELDTQDMTEVRGGVALTGQAVPTSVQS
Ga0207712_100482923	3300025961	Switchgrass Rhizosphere	MKIENLSKDLDTTGMTEVRGGTALTGQVVPTSVQDNAMLQSFHVASTAPV
Ga0207712_107901781	3300025961	Switchgrass Rhizosphere	MKIENLSQELEPQDMTEVRGGVALTGQAVPTSVQSNELAQKFNIASCA
Ga0207658_105025712	3300025986	Switchgrass Rhizosphere	MKIENLGKELDTETMAEVKGGIALTGQVVPTNVQSNALEQAFNIAANGPVAIANDAS
Ga0207658_107720132	3300025986	Switchgrass Rhizosphere	MKIENLGKELDTETMAEVKGGIALTGQVVPTNVQSN
Ga0207703_115910871	3300026035	Switchgrass Rhizosphere	MEIENLNKDLDTEAQKQVKGGVALTGQVVPTNVQDNALEQAFHIASGGPV
Ga0207639_104754512	3300026041	Corn Rhizosphere	MKIENLSKDLDAEAMTEVKGGIALTGQVVPTNVQDNELLQNFNVAAHGPV
Ga0207639_119428851	3300026041	Corn Rhizosphere	MKIENLSKDLDTEAMTEVTGGTALTGQVVPTNVQSNELLQSFNVASHGPVAIGNS
Ga0207641_114844831	3300026088	Switchgrass Rhizosphere	MEIENLNKDLDTEAQKQVKGGVALTGQVVPTNVQDNALEQAFHIASGGPVAIANDGTQTN
Ga0207676_117870431	3300026095	Switchgrass Rhizosphere	MKIENLGKELDTETMAEVKGGIALTGQVVPTNVQSNALEQAFNIAANGPVAIAND
Ga0207676_122739181	3300026095	Switchgrass Rhizosphere	MKIENLSKDLDTEAMTEVKGGVALTGQVVPTNVQSNALEQAFNIR
Ga0207698_115796513	3300026142	Corn Rhizosphere	MKIENLSKDLDTEAMTEVRGGVALTGQVVPTNVQSNALEQAFNIKANGPVAIANDADQSNDSD
Ga0209328_101326712	3300027727	Forest Soil	MLIENLSKELDTKTMTDVRGGIALTGQVVPTNLQSNEMNQIYNISSKGPVAIANDGSQENYSSQDSL
Ga0268266_100698281	3300028379	Switchgrass Rhizosphere	MKIENLSKELDTETMTEVKGGIALTGQVVPTNVQSNELLQSFNIASNGPVAIANDGSQSNYSDQD
Ga0307517_101838193	3300028786	Ectomycorrhiza	MKIENLGKELDTATMTEVKGGIALTGQVVPTNVQSNALEQAFNI
Ga0308197_103613102	3300031093	Soil	MKIENLSKDLDTEALTEVTGGLALTGQVVPTNVQS
Ga0307509_106370371	3300031507	Ectomycorrhiza	MKIENLSKDLDTEAMTEVAGGVALTGQVVPTSVQSNALEQ
Ga0335082_110356331	3300032782	Soil	MKIENLSKNLDSATMTEVKGGVALTGQVVPTNVQSNALEQAFNIR
Ga0307510_100000061	3300033180	Ectomycorrhiza	MKIENLSKDLDTVAMTEVTGGTALTGQVVPTNVQSNALEQAFQSKR
Ga0370548_125735_346_537	3300034644	Soil	MKIENLSKDLDTETMTEVTGGLALTGQVVPTNVQSNELLQNFHIASGGPVAIANDASQSNDSDQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094031

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences