Basic Information | |
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Family ID | F094054 |
Family Type | Metagenome |
Number of Sequences | 106 |
Average Sequence Length | 64 residues |
Representative Sequence | MLVCLGTFIVAALVGVLVLARSMPLADVIQGRQRLLAFSSALLTALFVAGMAGLAAYLVLARLVQ |
Number of Associated Samples | 40 |
Number of Associated Scaffolds | 106 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 70.59 % |
% of genes near scaffold ends (potentially truncated) | 26.42 % |
% of genes from short scaffolds (< 2000 bps) | 80.19 % |
Associated GOLD sequencing projects | 37 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.42 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (53.774 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (34.906 % of family members) |
Environment Ontology (ENVO) | Unclassified (34.906 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (52.830 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 61.29% β-sheet: 0.00% Coil/Unstructured: 38.71% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.42 |
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Pfam ID | Name | % Frequency in 106 Family Scaffolds |
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PF09719 | C_GCAxxG_C_C | 28.30 |
PF04794 | YdjC | 15.09 |
PF00266 | Aminotran_5 | 13.21 |
PF12055 | DUF3536 | 6.60 |
PF07690 | MFS_1 | 4.72 |
PF09095 | AmyA-gluTrfs_C | 3.77 |
PF06071 | YchF-GTPase_C | 1.89 |
PF00005 | ABC_tran | 1.89 |
PF08244 | Glyco_hydro_32C | 0.94 |
PF00892 | EamA | 0.94 |
COG ID | Name | Functional Category | % Frequency in 106 Family Scaffolds |
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COG3394 | Chitooligosaccharide deacetylase ChbG, YdjC/CelG family | Carbohydrate transport and metabolism [G] | 15.09 |
COG0012 | Ribosome-binding ATPase YchF, GTP1/OBG family | Translation, ribosomal structure and biogenesis [J] | 1.89 |
COG1621 | Sucrose-6-phosphate hydrolase SacC, GH32 family | Carbohydrate transport and metabolism [G] | 0.94 |
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Name | Rank | Taxonomy | Distribution |
All Organisms | root | All Organisms | 53.77 % |
Unclassified | root | N/A | 46.23 % |
Visualization |
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Scaffold | Taxonomy | Length | IMG/M Link |
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3300000231|TB_LI09_4DRAFT_10001407 | All Organisms → cellular organisms → Bacteria | 11377 | Open in IMG/M |
3300000231|TB_LI09_4DRAFT_10187228 | Not Available | 680 | Open in IMG/M |
3300003892|Ga0063012_10184191 | Not Available | 693 | Open in IMG/M |
3300005077|Ga0071116_1008113 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia → Thermoflexales → Thermoflexaceae → Thermoflexus → Thermoflexus hugenholtzii | 9569 | Open in IMG/M |
3300006224|Ga0079037_101709597 | All Organisms → cellular organisms → Bacteria | 629 | Open in IMG/M |
3300009091|Ga0102851_10340481 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1485 | Open in IMG/M |
3300009091|Ga0102851_10371745 | All Organisms → cellular organisms → Bacteria | 1428 | Open in IMG/M |
3300009091|Ga0102851_10837661 | All Organisms → cellular organisms → Bacteria | 987 | Open in IMG/M |
3300009091|Ga0102851_11164545 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 847 | Open in IMG/M |
3300009091|Ga0102851_11931348 | Not Available | 667 | Open in IMG/M |
3300009091|Ga0102851_12246029 | Not Available | 622 | Open in IMG/M |
3300009091|Ga0102851_12337907 | Not Available | 610 | Open in IMG/M |
3300009111|Ga0115026_11781854 | Not Available | 521 | Open in IMG/M |
3300009167|Ga0113563_11589169 | Not Available | 773 | Open in IMG/M |
3300009167|Ga0113563_11678968 | Not Available | 753 | Open in IMG/M |
3300010938|Ga0137716_10001567 | All Organisms → cellular organisms → Bacteria | 61769 | Open in IMG/M |
3300012931|Ga0153915_10316450 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1747 | Open in IMG/M |
3300012931|Ga0153915_11122098 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 918 | Open in IMG/M |
3300012931|Ga0153915_12265190 | Not Available | 636 | Open in IMG/M |
3300012931|Ga0153915_12722063 | Not Available | 578 | Open in IMG/M |
3300012931|Ga0153915_12845823 | Not Available | 565 | Open in IMG/M |
3300012964|Ga0153916_10313195 | All Organisms → cellular organisms → Bacteria | 1609 | Open in IMG/M |
3300012964|Ga0153916_10723179 | All Organisms → cellular organisms → Bacteria | 1075 | Open in IMG/M |
3300012964|Ga0153916_10748261 | All Organisms → cellular organisms → Bacteria | 1057 | Open in IMG/M |
3300012964|Ga0153916_11619665 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 721 | Open in IMG/M |
3300012964|Ga0153916_11852217 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 675 | Open in IMG/M |
3300012964|Ga0153916_12665281 | Not Available | 563 | Open in IMG/M |
3300012964|Ga0153916_12881861 | Not Available | 542 | Open in IMG/M |
3300012964|Ga0153916_13147493 | Not Available | 519 | Open in IMG/M |
3300018055|Ga0184616_10006726 | All Organisms → cellular organisms → Bacteria | 3120 | Open in IMG/M |
3300018055|Ga0184616_10380452 | Not Available | 530 | Open in IMG/M |
3300018059|Ga0184615_10430272 | All Organisms → cellular organisms → Bacteria | 720 | Open in IMG/M |
3300023311|Ga0256681_11819073 | All Organisms → cellular organisms → Bacteria → Terrabacteria group | 782 | Open in IMG/M |
3300024056|Ga0124853_1156662 | All Organisms → cellular organisms → Bacteria | 2199 | Open in IMG/M |
3300027740|Ga0214474_1159779 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 835 | Open in IMG/M |
3300027740|Ga0214474_1223930 | Not Available | 681 | Open in IMG/M |
3300027900|Ga0209253_10256846 | Not Available | 1372 | Open in IMG/M |
3300027900|Ga0209253_10993714 | Not Available | 580 | Open in IMG/M |
(restricted) 3300027995|Ga0233418_10098402 | Not Available | 880 | Open in IMG/M |
(restricted) 3300028043|Ga0233417_10439517 | Not Available | 606 | Open in IMG/M |
3300030613|Ga0299915_10049294 | Not Available | 3132 | Open in IMG/M |
3300030613|Ga0299915_10419890 | All Organisms → cellular organisms → Bacteria | 893 | Open in IMG/M |
3300030613|Ga0299915_10499295 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 799 | Open in IMG/M |
3300031707|Ga0315291_10273246 | All Organisms → cellular organisms → Bacteria | 1673 | Open in IMG/M |
3300032053|Ga0315284_11864599 | Not Available | 617 | Open in IMG/M |
3300032070|Ga0315279_10001156 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 45056 | Open in IMG/M |
3300032070|Ga0315279_10081649 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 2862 | Open in IMG/M |
3300032070|Ga0315279_10177972 | Not Available | 1686 | Open in IMG/M |
3300032118|Ga0315277_10918053 | Not Available | 810 | Open in IMG/M |
3300032156|Ga0315295_10007333 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 9462 | Open in IMG/M |
3300032156|Ga0315295_10838196 | Not Available | 921 | Open in IMG/M |
3300032156|Ga0315295_12075864 | All Organisms → cellular organisms → Bacteria | 532 | Open in IMG/M |
3300032173|Ga0315268_10001323 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 28437 | Open in IMG/M |
3300032173|Ga0315268_10014809 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia → Thermoflexales → Thermoflexaceae → Thermoflexus → Thermoflexus hugenholtzii | 7866 | Open in IMG/M |
3300032173|Ga0315268_11131037 | All Organisms → cellular organisms → Bacteria | 791 | Open in IMG/M |
3300032397|Ga0315287_11203421 | Not Available | 872 | Open in IMG/M |
3300032401|Ga0315275_11005277 | Not Available | 916 | Open in IMG/M |
3300032401|Ga0315275_11139476 | All Organisms → cellular organisms → Bacteria | 851 | Open in IMG/M |
3300032401|Ga0315275_11848794 | Not Available | 640 | Open in IMG/M |
3300033408|Ga0316605_10161173 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1838 | Open in IMG/M |
3300033408|Ga0316605_11297015 | Not Available | 705 | Open in IMG/M |
3300033413|Ga0316603_11312906 | All Organisms → cellular organisms → Bacteria | 686 | Open in IMG/M |
3300033414|Ga0316619_10458548 | All Organisms → cellular organisms → Bacteria | 1027 | Open in IMG/M |
3300033414|Ga0316619_10872573 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 775 | Open in IMG/M |
3300033414|Ga0316619_11435634 | Not Available | 617 | Open in IMG/M |
3300033414|Ga0316619_11977450 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → unclassified Caldilineae → Caldilineae bacterium | 531 | Open in IMG/M |
3300033416|Ga0316622_100736611 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1142 | Open in IMG/M |
3300033416|Ga0316622_101169430 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 900 | Open in IMG/M |
3300033416|Ga0316622_101459072 | Not Available | 799 | Open in IMG/M |
3300033416|Ga0316622_102093499 | All Organisms → cellular organisms → Bacteria | 657 | Open in IMG/M |
3300033416|Ga0316622_102581936 | Not Available | 585 | Open in IMG/M |
3300033416|Ga0316622_103132092 | Not Available | 525 | Open in IMG/M |
3300033416|Ga0316622_103392460 | Not Available | 502 | Open in IMG/M |
3300033418|Ga0316625_102164439 | All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Treponemataceae → Treponema | 553 | Open in IMG/M |
3300033419|Ga0316601_102332903 | All Organisms → cellular organisms → Bacteria | 539 | Open in IMG/M |
3300033480|Ga0316620_10012930 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 4642 | Open in IMG/M |
3300033480|Ga0316620_10122551 | All Organisms → cellular organisms → Bacteria | 2024 | Open in IMG/M |
3300033480|Ga0316620_10324364 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae | 1359 | Open in IMG/M |
3300033480|Ga0316620_10390774 | Not Available | 1253 | Open in IMG/M |
3300033480|Ga0316620_10443243 | All Organisms → cellular organisms → Bacteria | 1186 | Open in IMG/M |
3300033480|Ga0316620_11102744 | Not Available | 775 | Open in IMG/M |
3300033480|Ga0316620_11395222 | Not Available | 690 | Open in IMG/M |
3300033480|Ga0316620_12093034 | Not Available | 563 | Open in IMG/M |
3300033482|Ga0316627_100524073 | All Organisms → cellular organisms → Bacteria | 1059 | Open in IMG/M |
3300033482|Ga0316627_101275435 | Not Available | 731 | Open in IMG/M |
3300033485|Ga0316626_11759004 | Not Available | 560 | Open in IMG/M |
3300033486|Ga0316624_10111340 | All Organisms → cellular organisms → Bacteria | 1956 | Open in IMG/M |
3300033486|Ga0316624_10674718 | All Organisms → cellular organisms → Bacteria | 907 | Open in IMG/M |
3300033486|Ga0316624_11014256 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 749 | Open in IMG/M |
3300033487|Ga0316630_10752325 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 831 | Open in IMG/M |
3300033487|Ga0316630_12055556 | Not Available | 526 | Open in IMG/M |
3300033487|Ga0316630_12210111 | Not Available | 508 | Open in IMG/M |
3300033489|Ga0299912_10042741 | All Organisms → cellular organisms → Bacteria | 3961 | Open in IMG/M |
3300033489|Ga0299912_10042950 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia → Thermoflexales → Thermoflexaceae → Thermoflexus → Thermoflexus hugenholtzii | 3950 | Open in IMG/M |
3300033489|Ga0299912_10068249 | All Organisms → cellular organisms → Bacteria | 3114 | Open in IMG/M |
3300033489|Ga0299912_10309570 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae | 1321 | Open in IMG/M |
3300033489|Ga0299912_10766901 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 741 | Open in IMG/M |
3300033489|Ga0299912_11214799 | Not Available | 549 | Open in IMG/M |
3300033513|Ga0316628_100029144 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia → Thermoflexales → Thermoflexaceae → Thermoflexus → Thermoflexus hugenholtzii | 5362 | Open in IMG/M |
3300033513|Ga0316628_102451233 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 689 | Open in IMG/M |
3300033513|Ga0316628_103320595 | Not Available | 584 | Open in IMG/M |
3300033513|Ga0316628_104348450 | Not Available | 503 | Open in IMG/M |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Habitat | Taxonomy | Distribution |
Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 34.91% |
Sediment | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment | 18.87% |
Freshwater Wetlands | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands | 13.21% |
Freshwater Wetlands | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands | 11.32% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil | 7.55% |
Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 2.83% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 2.83% |
Freshwater Lake Sediment | Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment | 1.89% |
Groundwater | Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater | 1.89% |
Wetland | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland | 0.94% |
Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater | 0.94% |
Sinkhole | Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Sinkhole | 0.94% |
Hot Spring Sediment | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Sediment | 0.94% |
Hot Spring Fe-Si Sediment | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Neutral → Hot Spring Fe-Si Sediment | 0.94% |
Visualization |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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3300000231 | Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- LI09_4 | Environmental | Open in IMG/M |
3300003892 | Hot spring sediment microbial communities from Chocolate Pots, Yellowstone National Park, Wyoming that are Fe(III) reducing - CP Core 2, 1cm | Environmental | Open in IMG/M |
3300005077 | Water filled karst sinkhole microbial communities from Little Salt Spring, North Port, Florida - Phototrophic mat 2014 | Environmental | Open in IMG/M |
3300006224 | Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG | Environmental | Open in IMG/M |
3300009091 | Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly) | Environmental | Open in IMG/M |
3300009111 | Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 | Environmental | Open in IMG/M |
3300009167 | Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2) | Environmental | Open in IMG/M |
3300010938 | Sediment microbial community from Chocolate Pots hot springs, Yellowstone National Park, Wyoming, USA. Combined Assembly of Gp0156111, Gp0156114, Gp0156117 | Environmental | Open in IMG/M |
3300012931 | Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG | Environmental | Open in IMG/M |
3300012964 | Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG | Environmental | Open in IMG/M |
3300018055 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex | Environmental | Open in IMG/M |
3300018059 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex | Environmental | Open in IMG/M |
3300023311 | Combined Assembly of Gp0281739, Gp0281740, Gp0281741 | Environmental | Open in IMG/M |
3300024056 | Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (PacBio error correction) | Environmental | Open in IMG/M |
3300027740 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214 HiSeq | Environmental | Open in IMG/M |
3300027900 | Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes) | Environmental | Open in IMG/M |
3300027995 (restricted) | Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_1_MG | Environmental | Open in IMG/M |
3300028043 (restricted) | Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0.5_MG | Environmental | Open in IMG/M |
3300030613 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227 | Environmental | Open in IMG/M |
3300031707 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20 | Environmental | Open in IMG/M |
3300032053 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16 | Environmental | Open in IMG/M |
3300032070 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_20 | Environmental | Open in IMG/M |
3300032118 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15 | Environmental | Open in IMG/M |
3300032156 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0 | Environmental | Open in IMG/M |
3300032173 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top | Environmental | Open in IMG/M |
3300032397 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0 | Environmental | Open in IMG/M |
3300032401 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0 | Environmental | Open in IMG/M |
3300033408 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT | Environmental | Open in IMG/M |
3300033413 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT | Environmental | Open in IMG/M |
3300033414 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B | Environmental | Open in IMG/M |
3300033416 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C | Environmental | Open in IMG/M |
3300033418 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A | Environmental | Open in IMG/M |
3300033419 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT | Environmental | Open in IMG/M |
3300033480 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B | Environmental | Open in IMG/M |
3300033482 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C | Environmental | Open in IMG/M |
3300033485 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A | Environmental | Open in IMG/M |
3300033486 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A | Environmental | Open in IMG/M |
3300033487 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A | Environmental | Open in IMG/M |
3300033489 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214 | Environmental | Open in IMG/M |
3300033513 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C | Environmental | Open in IMG/M |
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
TB_LI09_4DRAFT_100014077 | 3300000231 | Groundwater | MMQGNTLICLGSFVAAALVGMLVLARSMPLAEVIQGRQRLLAHATALLTALFVAGMAGLAAYLVLSTFINP* |
TB_LI09_4DRAFT_101872282 | 3300000231 | Groundwater | MIRGDTLVCLGACVAAALVGVLVLARSTPLAEVIQGRQRWLAHATTLLMALFAAGMAGLAAYLVLSTLIIP* |
Ga0063012_101841912 | 3300003892 | Hot Spring Sediment | MFVCLGSFIAASLVGVLVLARSTPLADLVQGRQHALAYLTALLTALFAAGLAGLAAYLVLSI |
Ga0071116_10081135 | 3300005077 | Sinkhole | LICLGSFLAAALMGGLVLARSMPLVDVIQGRQRLIAHASAFLTALMAAGLAGLAAFLVLSAFFK* |
Ga0079037_1017095972 | 3300006224 | Freshwater Wetlands | MPVMVCLGSFIAAALVGALVLARSAPLADVIQGRQRMLAHSTALLTALFAAGMAGLAVYLLLSALVK* |
Ga0079037_1025020831 | 3300006224 | Freshwater Wetlands | MLICLGSFIAAALVGVLTLARSMPLADVIQGRQRLLAFSSALLTAL |
Ga0102851_103404812 | 3300009091 | Freshwater Wetlands | MLVCLGSFIAAALVGALTLARSMPLADVIQGRQRLLAFSSALLMALFVGGMAGLAAYLVLARLVQ* |
Ga0102851_103717452 | 3300009091 | Freshwater Wetlands | MPPLVCVGSFIAAALVGMLVLARSTALTVPIEGRQRWLAYATALLTALFAAGMAGLIAYLILSNLIN* |
Ga0102851_108376614 | 3300009091 | Freshwater Wetlands | FIAAALVGALTLARSMPLADVIQGRQRLLAFSSALLTALFVGGMAGLAAYLVLTRLVQ* |
Ga0102851_111645451 | 3300009091 | Freshwater Wetlands | MVCLGTFVAAALVGVLVLARSLPLTVPVEGRQRWLAYATALLTALFAAGMAGLIAYLLLSNLIK* |
Ga0102851_119313482 | 3300009091 | Freshwater Wetlands | MICLGSFIAASLVGVLVLTRSMPLADLVQGRQHILAHLSAILTALFVAGMAGLAAYLVLSMFIK* |
Ga0102851_122460291 | 3300009091 | Freshwater Wetlands | MLICLGSFIAAALVGVLTLARSMPLADVIQGRQRLLAFSSALLTALFVAGMAGLAAYLVLARLVQ* |
Ga0102851_123379072 | 3300009091 | Freshwater Wetlands | LVLARSAPLAGVIQGRQRMLSHSTALLTALFAAGMAGLAVYLVLSALVK* |
Ga0115026_117818541 | 3300009111 | Wetland | MFACLGSFIAASLVGVLVLARSTPLAELVQGRQRLLAHATAILTALFVAGMAGLAVFLILSNLTQ* |
Ga0113563_115891692 | 3300009167 | Freshwater Wetlands | MLVCLGSFIAAALVGALTLARSMPLADVIQGRQRLLAFSSALLTALFVGGMAGLAAYLVLARLVQ* |
Ga0113563_116789682 | 3300009167 | Freshwater Wetlands | VGSFIAAALVGALVLARSAPLADVIQGRQRMLAHSTALLTALFAAGMAGLAVYLLLSALVK* |
Ga0137716_1000156745 | 3300010938 | Hot Spring Fe-Si Sediment | MFVCLGSFIAASLVGVLVLARSTPLADLVQGRQHALAYLTALLTALFAAGLAGLAAYLVLSILFQ* |
Ga0153915_103164503 | 3300012931 | Freshwater Wetlands | MLICLGSFIAAALVGVLTLARSMPLADVIQGRQRLLAFSSALLTALFVGGMAGLAAYLVLARLVQ* |
Ga0153915_111220982 | 3300012931 | Freshwater Wetlands | MPPLVCLGSFIAAALVGALVLARSMPLTAPVEGRQRWLAYATALLTALFAAGMAGLIAYLILSNLVE* |
Ga0153915_122651901 | 3300012931 | Freshwater Wetlands | MSLLVCLGTFIVAALVGMLVLARSMPLADVIQGRQHLLAFSSALLTALFVGGMAGLAAYLVL |
Ga0153915_127220632 | 3300012931 | Freshwater Wetlands | FIAAALVGALVLARSAPLADVIQGRQRMLAHSTALLTALFAAGMAGLAAYLLLSALVK* |
Ga0153915_128458232 | 3300012931 | Freshwater Wetlands | MPVCLGTFIVAALVSMLVLARSMPLADVIQGRQRLLAFSSALLTALFAGGMAGLAAYLVLARLVQ* |
Ga0153916_103131953 | 3300012964 | Freshwater Wetlands | LGTFIVTAFVGMLVLARSMPLADVIQGRQRLLAFSSALLTALFVGGMAGLAAYLVLARLVQ* |
Ga0153916_106480131 | 3300012964 | Freshwater Wetlands | MPVMVCLGSFIAAALVGALVLARSAPLADVIQGRQRMLAHSTALLTALFAAGMAGLAAYLLLSALVKCTHLKEALVSNVERATITF |
Ga0153916_107231792 | 3300012964 | Freshwater Wetlands | MLVCLGSFIVAASVGVLVLARSMPLADVIQGRQRLLAFSSALLTALFVGGMAGLAAYLVLARFIK* |
Ga0153916_107482612 | 3300012964 | Freshwater Wetlands | MPTLVCVGSFIAAALVGVLVLARSTPLTASVEGRQRWLAYATALLTALFAAAMAGLIAYLLLFNLVK* |
Ga0153916_116196652 | 3300012964 | Freshwater Wetlands | MPPLVCLGSFIAAALVGALVLARSMPLTAPVEGRQRGLAYATALLTALFAAGMAGLIAYLILSNLVE* |
Ga0153916_118522172 | 3300012964 | Freshwater Wetlands | MLACLGSFIAAALVGVLVLARSMPLTAQVEGRQRWLAYATALLTALFAAGMAGLIAYLLLSNLIK* |
Ga0153916_126652812 | 3300012964 | Freshwater Wetlands | ALVGALVLARSAPLADVIQGRQRMLAHSTALLTALFAAGMAGLAAYLLLSALVK* |
Ga0153916_128818612 | 3300012964 | Freshwater Wetlands | MLVCLGTFLVAALVGILVLARSMPLADVIQGRQRLLAFSSALLTALFVGGMAGLAAYLVLARLVQ* |
Ga0153916_131474932 | 3300012964 | Freshwater Wetlands | MSLSVCLGTFIVAALVGMLVLARSMPLADVIQGRQRLLAFSSALLTALFVAGMAGLVVYLVLARLAQ* |
Ga0184616_100067263 | 3300018055 | Groundwater Sediment | MLPLVCLGSFIAAALVGVLVLARSLPLAAPIEGRQRWLAYATALLTALFVAGMAGLIAYLILSNLVK |
Ga0184616_103804522 | 3300018055 | Groundwater Sediment | MLVCLGSFIAAALVGVLTLARSMPLADVIQGRQRLLAFSSALLTALFVGGMAGLAAYLVLARLVQ |
Ga0184615_104302722 | 3300018059 | Groundwater Sediment | LAAIACLGSFIAASLVGVLVLARSTPLAELVQGRQRTRCVAHATAILMTLFVAGMAGLAVFLILSNFSQ |
Ga0256681_118190731 | 3300023311 | Freshwater | FAAALVGVLVLARSMPLAAPIEGRQRGLAYATALLTALFVAGMAGLIAYLILSNLVK |
Ga0124853_11566622 | 3300024056 | Freshwater Wetlands | MLACLGSFIAAALVGVLVLARSMPLTAPIEGTPRCSNAQWLAYSTALLTALFAAGMAGLIAYLLLSNLIK |
Ga0214474_11597791 | 3300027740 | Soil | MVCLGSFIAAALVGVLVLARAMSLTAPIEGRQQWLAYSTTLLTALFAAGMAGLIVYLILSNLVK |
Ga0214474_12239303 | 3300027740 | Soil | MPPIPMSPLVCLGSFIAAALVGVLVLARSLPLTAPAEGRQRWLAYATALLTALFVAGMAGLIAYLILSNLVK |
Ga0209253_102568462 | 3300027900 | Freshwater Lake Sediment | MSLLVCLGTFIAAALVGMLVLARSMPLADVIQGRQRLLAFSSALLTALFVGGMAGLATYLVLLR |
Ga0209253_109937142 | 3300027900 | Freshwater Lake Sediment | MLVCLGTFIAAALVGVLTLARSMPLADVIQGRQRLLAFSSALLTALFVGGMAGLAAYLVLARLVQ |
(restricted) Ga0233418_100984022 | 3300027995 | Sediment | MMVCLGSFIAAALVGALVLARSAPLADVVQGRQRMLAHSTALLTALFAAGMAGLAVYLLLSALVK |
(restricted) Ga0233417_104395172 | 3300028043 | Sediment | LDAITTLVCLGSFVAASLVGVLVLARSMPLADVIQGRQRLLAHTTAVLTALFVASMAGLAMYLVLSALVR |
Ga0299915_100492943 | 3300030613 | Soil | MLACLGSFVAAALVGVLVLARSLPLIAPVEGRQRGLAYATALLTALFVAGMAGLIAYLILSNLVK |
Ga0299915_104198902 | 3300030613 | Soil | MPTLVCVGSFIAAALVGVLVLARSTPLTASVEGRQRWLAYATALLTALFAAAMAGLIAYLLLFNLVK |
Ga0299915_104992951 | 3300030613 | Soil | MLVCLGSFIAAALVGALTLARSMPLADVIQGRQRLLAFSSALLMALFVGGMAGLAAYLVLARF |
Ga0315291_102732463 | 3300031707 | Sediment | MMQSDTLICLGAFVTAALVGALVLARSMPLADVIQGRQRLLAHATAVLTALFVAGMAGLAAYLLLSTFVNP |
Ga0315284_118645991 | 3300032053 | Sediment | MLVCLGSFIAAALVGVLTLARSMPLADVVQGRQRLLAFSSALLTALFVGGMAGLAAY |
Ga0315279_1000115620 | 3300032070 | Sediment | MPPLVCLGSFIAAALVGVLVLARSMPLTAPVEGRQRWLAYATALLTALFAAGMAGLIAYLILSNLVK |
Ga0315279_100816491 | 3300032070 | Sediment | MPTLVCVGSFIAAALVGVLVLARSTPLTASVEGRQRWLAYATALLTALFAAAMAGLI |
Ga0315279_101779722 | 3300032070 | Sediment | MMQSDTLICLGAFVTAALVGALVLARSMPLADVIQGRQRLLAHATAVLTALFVAGMAGLAVYLALSTLVNP |
Ga0315277_109180532 | 3300032118 | Sediment | MMQSDTLICLGAFVTAALVGALVLARSMPLADVIQGRQRLLAHATAVLTALFVAGMAGLAVYLLLSTCINRLAACRRGVV |
Ga0315295_100073337 | 3300032156 | Sediment | MLVCLGTFIVAALVGVLVLARSMPLADVIQGRQRLLAFSSALLTALFVAGMAGLAAYLVLARLVQ |
Ga0315295_108381961 | 3300032156 | Sediment | MQSDTLICLGALVTAALVGALVLARSMPLADVIQGRQRLLAHATAVLTALFVAGMAGLAAYLVLSTFVNP |
Ga0315295_120758641 | 3300032156 | Sediment | LGSFIAASLVGVLVLARSTPLADLVQGRQRALAHATAILTALFVAGMAGLAVFLILSTLT |
Ga0315268_100013238 | 3300032173 | Sediment | MFVCLGSFIAAALVGMLVLARSMPLVDVIEGRQRWLAHTTALLTALFVAGMVGLAAYLILSRMIK |
Ga0315268_100148096 | 3300032173 | Sediment | MLVCLGSFIAAALVGVLVLARSTPLAEVIKGRQRLLAHSTTLLTALFAAGMAGLAVYLVLTTLLK |
Ga0315268_111310372 | 3300032173 | Sediment | MLVCLGSFIVAASVGVLVLARSMPLADVIQGRQRLLAFSSALLTALFVGGMAGLAAYLVLARFIK |
Ga0315287_112034211 | 3300032397 | Sediment | MMQSDTLICLGAFVAAALVGALVLARSMPLADVIQGRQRLLAHATAVLTALFVAGMAGLAAYLLLSTFVNP |
Ga0315275_110052772 | 3300032401 | Sediment | MLVCLGTFIVAALVGVLVLARSMPLADVIQGRQRLLAFSSALLTALFVGGMAGLAAYLVLARLVQ |
Ga0315275_111394761 | 3300032401 | Sediment | SFIAASLVGVLVLARSTPLAELVQGRQRTRCIAHATAILTALFVAGMAGLAVFMILSNFS |
Ga0315275_111743262 | 3300032401 | Sediment | MLVCLGTFIVAALVGVLVLARSMPLADVIQGRQRLLAFSSALLTALFVAGMA |
Ga0315275_117385101 | 3300032401 | Sediment | MLICPGSFIAASLVGVLVIARSMPLADIIQGRQRILAYSTAL |
Ga0315275_118487941 | 3300032401 | Sediment | MPPVVCLGSFIATVLVAILVLARSMPLTAPIEGRDRLLAYLTAFLTALFAAGMAGLAVYLALSNLVK |
Ga0316605_101611732 | 3300033408 | Soil | MPPLVCVGSFIAAALVGMLVLARSTALTVPIEGRQRWLAYATALLTALFAAGMAGLIAYLILSNLIN |
Ga0316605_112970152 | 3300033408 | Soil | MFACLGSFIAASLVGVLVLARSTPLADLVQGRQRILAHATAILTALFVAGMAGLAAFLILSNLTR |
Ga0316603_113129062 | 3300033413 | Soil | MFACLGSFIAASLVGVLVLARSTPLADLVQGRQRLLAHATAILTALFVAGMAGLAAFLILSNFHP |
Ga0316619_104585482 | 3300033414 | Soil | MMVCLGSFIAAALVGALVLARSAPLAGVIQGRQRMLAHSTALLTALFAAGMAGLAVYLLLSALAK |
Ga0316619_108725732 | 3300033414 | Soil | MVCLGTFVAAALVGVLVLARSLPLTVPVEGRQRWLAYATALLTALFAAGMAGLIVYLILSNLIK |
Ga0316619_114356342 | 3300033414 | Soil | MSVLVCLGTFIVAVLVGVLVLARSMPLADVIQGRQRWLAFSSALLTALFVAGMAGLAAYLVLTRLVQ |
Ga0316619_119774502 | 3300033414 | Soil | MFACLGSFIAASLVGVLVLARSTPLADLVQGRQRLLAHVTAILTALFVAGMAGLAAFLILSNFHP |
Ga0316622_1007366113 | 3300033416 | Soil | ALVGALVVARSAPLADVIPGRQRMLAHSTALLTALFAAGMAGLAVYLVLSALVK |
Ga0316622_1011694302 | 3300033416 | Soil | MPPLVCVGSFIAAALVGMLVLARSTALTVPIEGRQRWLAYGTALLTALFAAGMAGLIAYLILSNLIK |
Ga0316622_1014590722 | 3300033416 | Soil | VGSFIAAALVGALVLARSAPLADVIQGRQRMLAHSTALLTALFAAGMAGLAVYLLLSALV |
Ga0316622_1020934992 | 3300033416 | Soil | LGSFIAASLVGMLVLARSTPLAELVQGRQRTRWVAHATAILTALFVAGMAGLAVFLILSNLTQ |
Ga0316622_1025819361 | 3300033416 | Soil | MSLLVCLGTFSVAALVGVLVLARSMPLADVIQGRQRWLAFSSALLTALFVAGMAGLAA |
Ga0316622_1031320921 | 3300033416 | Soil | MICLGSFIAASLVGVLVLARSMPLADLVQGRQHILAHLSAILTALFVAGMAGLAAYLALS |
Ga0316622_1033924602 | 3300033416 | Soil | VIVCLGSFIAAALVGALVVARSAPLADVIPGRQRMLAHSTALLTALFAAGMAGLAVY |
Ga0316625_1021644392 | 3300033418 | Soil | MPVMVCLGPFIVAALVGALVLARSAPLADVIQGRQRMLAHSTALLTALFAAGMAGLAVYLLLSALVK |
Ga0316601_1023329032 | 3300033419 | Soil | MFACLGSFIAASLVGVLVLARSTPLADLVQGRQRILAHATAILTALFVAGMAGLAAFLILSNFRP |
Ga0316620_100129303 | 3300033480 | Soil | MVCVGSFIAAALVGVLVLARSTPLTVPVEGRQRWLAYATALLTALFAAGMAGLIVYLILSNLIK |
Ga0316620_101225515 | 3300033480 | Soil | MLICLGSFIAAALVGVLTLARSMPLADVIQGRQRLLAFSSALLTALFVAGMAGLAAYLVLARLVQ |
Ga0316620_103243642 | 3300033480 | Soil | MPPIPMPPLVCLGSFIAAALVGALVLARSMPLTAPVEGRQRWLAYATALLTALFAAGMAGLIAYLILSNLVE |
Ga0316620_103907742 | 3300033480 | Soil | MVCLGAFIAAALVGVLVLARSTPLTAPVEGRQRWLAYATVLLTALFAAGMAGLIAYLILSNLIK |
Ga0316620_104432433 | 3300033480 | Soil | KAMPVCLGTFIVAALVSMLVLARSMPLADVIQGRQRLLAFSSALLTALFAGGMAGLAAYLVLLRLGQ |
Ga0316620_111027441 | 3300033480 | Soil | MPPLVCVGSFIAAALVGMLVLARSTALTVPIEGRQRWLAYATALLTALFAAGMAGLIAYLILSNL |
Ga0316620_113952222 | 3300033480 | Soil | MVCLGTFIAAALVGVLVLARSTPLTAPVEGRQRWLAYATALLTALFVAGMAGLIAYLILSNLIK |
Ga0316620_120930342 | 3300033480 | Soil | VIVCVGSFIAAALVGALVLARSAPLADVIQGRQRMLAHSTALLTALFAAGMAGLAVYLLLSALVK |
Ga0316627_1005240732 | 3300033482 | Soil | MSLLVCLGTFIVAALVSMLVLARSMPLADVIQGRQRLLAFSSALLTALFVGGMAGLAAYLVLARLVQ |
Ga0316627_1012754352 | 3300033482 | Soil | MICLGTFIVASLVGVLVLARSTPLADLVQGRQHILAYLSAVLTALLVAG |
Ga0316626_117590041 | 3300033485 | Soil | MLACLGSFIAAALVGVLVLARSMPLTAPIEGRQQWLAYATALLTALFAAGMAGLIAYLLLSNLIK |
Ga0316624_101113404 | 3300033486 | Soil | PTLVCVGSFIAAALVGVLVLARSTPLTASVEGRQRWLAYATALLTALFAAAMAGLIAYLLLFNLVK |
Ga0316624_106747182 | 3300033486 | Soil | VCGGSFLVAALVGGLVLARSTPLADVIQGRQRLLAYSTAFLTALFVAGLAGLAAFLVLSKVIR |
Ga0316624_110142561 | 3300033486 | Soil | MPPLVCVGSFIAAALVGMLVLARSTALTVPIEGRQRWLAYATTLLTALFAAGMAGLIAYLILSNLIK |
Ga0316630_107523252 | 3300033487 | Soil | MPPLVCLGSFIPAALVGVLVLARSMPLAAPVEGTPRCSNARWLAYATALLTALFAAGMAGLIAYLILSNLVK |
Ga0316630_120555562 | 3300033487 | Soil | MLVCLGSFIAAALVGALTLARSMPLADVIQGRQRLLAFSSALLTALFVGGMAGLAAYLVLARLVQ |
Ga0316630_122101112 | 3300033487 | Soil | MICLGTFIVASLVGVLVLARSTPLADLVQGRQHILAYLSAVLTALLVAGMAGLAAYLVLSGLIQ |
Ga0299912_100427413 | 3300033489 | Soil | MICLGSFIAASLVGVLVLARSMPLADLVQGRQHILAHLSAILTALLVAGMAGLAAYLVLSMFIK |
Ga0299912_100429502 | 3300033489 | Soil | MMQSDTLICLGALVTAALVGALVLARSMPLADVIQGRQRLLAHATAVLTALFVAGMAGLAAYLLLSTFVNP |
Ga0299912_100682493 | 3300033489 | Soil | MPPIPMPPLVCLGSFIAAALVGVLVLARSMPLTAPVEGRQRWLAYATALLTALFAAGMAGLIAYLILSNLVK |
Ga0299912_103095702 | 3300033489 | Soil | MLACLGSFIAAALVGVLVLARSMPLTAPIEGRQQWLAYSTALLTALFAAGMAGLIAYLLLSNLIK |
Ga0299912_107669012 | 3300033489 | Soil | LVCVGSFIAAALVGVLVLARSTPLTASVEGRQRWLAYATALLTALFAAAMAGLIAYLLLFNLVK |
Ga0299912_112147992 | 3300033489 | Soil | MPVCLGTFIVAALVSMLVLARSMPLADVIQGRQRLLAFSSALLTALFVGGMAGLAAYLVLARFIK |
Ga0316628_1000291442 | 3300033513 | Soil | MVCLGAFIAAALVGVLVLARSTPLTAPVEGRQRWLAYATVLLTALFAAGMVGLIAYLILSNLIK |
Ga0316628_1024512332 | 3300033513 | Soil | TAMVCLGTFIAAALVGVLVLARSTPLTVPVEGRQRWLAYATALLTALFAAGMAGLIVYLILSNLIK |
Ga0316628_1033205951 | 3300033513 | Soil | MPPLVCVGSFIAAALVGMLVLARSTALTVPIEGRQRWLAYATALLTALFAAGMAGLI |
Ga0316628_1043484501 | 3300033513 | Soil | AKTMWVCVGSFLVAALVGGLALARSAPLADVIQGRQRLLAYSTAFLTALFVAGLAGLAAFLVLSKVIR |
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