Basic Information | |
---|---|
Family ID | F094078 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 106 |
Average Sequence Length | 58 residues |
Representative Sequence | MRKESKPKLRTPKPPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGAVFAWLVAAL |
Number of Associated Samples | 98 |
Number of Associated Scaffolds | 106 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 70.75 % |
% of genes near scaffold ends (potentially truncated) | 20.75 % |
% of genes from short scaffolds (< 2000 bps) | 86.79 % |
Associated GOLD sequencing projects | 86 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.40 |
Hidden Markov Model |
---|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (50.943 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (12.264 % of family members) |
Environment Ontology (ENVO) | Unclassified (28.302 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (44.340 % of family members) |
⦗Top⦘ |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 37.65% β-sheet: 0.00% Coil/Unstructured: 62.35% | Feature Viewer |
|
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.40 |
Powered by PDBe Molstar |
⦗Top⦘ |
Pfam ID | Name | % Frequency in 106 Family Scaffolds |
---|---|---|
PF04392 | ABC_sub_bind | 23.58 |
PF04166 | PdxA | 5.66 |
PF00085 | Thioredoxin | 3.77 |
PF01814 | Hemerythrin | 2.83 |
PF13470 | PIN_3 | 0.94 |
PF07715 | Plug | 0.94 |
PF01545 | Cation_efflux | 0.94 |
PF13924 | Lipocalin_5 | 0.94 |
PF13185 | GAF_2 | 0.94 |
PF00903 | Glyoxalase | 0.94 |
COG ID | Name | Functional Category | % Frequency in 106 Family Scaffolds |
---|---|---|---|
COG2984 | ABC-type uncharacterized transport system, periplasmic component | General function prediction only [R] | 23.58 |
COG1995 | 4-hydroxy-L-threonine phosphate dehydrogenase PdxA | Coenzyme transport and metabolism [H] | 5.66 |
COG0053 | Divalent metal cation (Fe/Co/Zn/Cd) efflux pump | Inorganic ion transport and metabolism [P] | 0.94 |
COG1230 | Co/Zn/Cd efflux system component | Inorganic ion transport and metabolism [P] | 0.94 |
COG3965 | Predicted Co/Zn/Cd cation transporter, cation efflux family | Inorganic ion transport and metabolism [P] | 0.94 |
⦗Top⦘ |
Name | Rank | Taxonomy | Distribution |
All Organisms | root | All Organisms | 50.94 % |
Unclassified | root | N/A | 49.06 % |
Visualization |
---|
Powered by ApexCharts |
⦗Top⦘ |
Habitat | Taxonomy | Distribution |
Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 12.26% |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 7.55% |
Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 6.60% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 5.66% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 3.77% |
Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 3.77% |
Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 3.77% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 3.77% |
Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 3.77% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 3.77% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 3.77% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 3.77% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 3.77% |
Soil | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil | 2.83% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 2.83% |
Natural And Restored Wetlands | Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands | 1.89% |
Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 1.89% |
Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 1.89% |
Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere | 1.89% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 1.89% |
Sediment | Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment | 1.89% |
Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere | 1.89% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.89% |
Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere | 1.89% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 0.94% |
Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 0.94% |
Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 0.94% |
Groundwater Sand | Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand | 0.94% |
Soil | Environmental → Terrestrial → Soil → Sand → Desert → Soil | 0.94% |
Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere | 0.94% |
Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 0.94% |
Arabidopsis Thaliana Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere | 0.94% |
Miscanthus Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere | 0.94% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.94% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 0.94% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 0.94% |
Visualization |
---|
Powered by ApexCharts |
Taxon OID | Sample Name | Habitat Type | IMG/M Link |
---|---|---|---|
2228664022 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
3300000364 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
3300001305 | Grasslands soil microbial communities from Hopland, California, USA | Environmental | Open in IMG/M |
3300004022 | Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1 | Environmental | Open in IMG/M |
3300004114 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5 | Environmental | Open in IMG/M |
3300004156 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1 | Environmental | Open in IMG/M |
3300004157 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2 | Environmental | Open in IMG/M |
3300004463 | Combined assembly of Arabidopsis thaliana microbial communities | Host-Associated | Open in IMG/M |
3300005093 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks | Environmental | Open in IMG/M |
3300005294 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil | Environmental | Open in IMG/M |
3300005295 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 | Environmental | Open in IMG/M |
3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
3300005353 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG | Host-Associated | Open in IMG/M |
3300005406 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG | Environmental | Open in IMG/M |
3300005434 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG | Environmental | Open in IMG/M |
3300005440 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG | Environmental | Open in IMG/M |
3300005526 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 | Environmental | Open in IMG/M |
3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Host-Associated | Open in IMG/M |
3300005545 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG | Environmental | Open in IMG/M |
3300005547 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG | Environmental | Open in IMG/M |
3300005549 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG | Environmental | Open in IMG/M |
3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Host-Associated | Open in IMG/M |
3300005713 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2) | Environmental | Open in IMG/M |
3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Host-Associated | Open in IMG/M |
3300006049 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 | Host-Associated | Open in IMG/M |
3300006058 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 | Host-Associated | Open in IMG/M |
3300006196 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 | Host-Associated | Open in IMG/M |
3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) | Host-Associated | Open in IMG/M |
3300006574 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300006606 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300006844 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Host-Associated | Open in IMG/M |
3300006846 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 | Host-Associated | Open in IMG/M |
3300006871 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Host-Associated | Open in IMG/M |
3300006876 | Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 | Environmental | Open in IMG/M |
3300006918 | Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 | Environmental | Open in IMG/M |
3300007004 | Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost | Environmental | Open in IMG/M |
3300007255 | Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 | Environmental | Open in IMG/M |
3300009092 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG | Host-Associated | Open in IMG/M |
3300009094 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) | Host-Associated | Open in IMG/M |
3300009137 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158 | Environmental | Open in IMG/M |
3300009156 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2) | Host-Associated | Open in IMG/M |
3300009162 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2 | Host-Associated | Open in IMG/M |
3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Host-Associated | Open in IMG/M |
3300009610 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 | Environmental | Open in IMG/M |
3300009807 | Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10 | Environmental | Open in IMG/M |
3300010046 | Tropical forest soil microbial communities from Panama - MetaG Plot_36 | Environmental | Open in IMG/M |
3300010397 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4 | Environmental | Open in IMG/M |
3300010399 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3 | Environmental | Open in IMG/M |
3300010400 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 | Environmental | Open in IMG/M |
3300010401 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1 | Environmental | Open in IMG/M |
3300011106 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2) | Environmental | Open in IMG/M |
3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Host-Associated | Open in IMG/M |
3300011439 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2 | Environmental | Open in IMG/M |
3300012212 | Combined assembly of Hopland grassland soil | Host-Associated | Open in IMG/M |
3300012469 | Combined assembly of Soil carbon rhizosphere | Host-Associated | Open in IMG/M |
3300012491 | Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.8.old.040610 | Host-Associated | Open in IMG/M |
3300012515 | Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610 | Host-Associated | Open in IMG/M |
3300012685 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG | Environmental | Open in IMG/M |
3300012930 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300012957 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG | Environmental | Open in IMG/M |
3300012958 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG | Environmental | Open in IMG/M |
3300012960 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG | Environmental | Open in IMG/M |
3300018027 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex | Environmental | Open in IMG/M |
3300018083 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1 | Environmental | Open in IMG/M |
3300020202 | Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_10 | Environmental | Open in IMG/M |
3300024179 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK36 | Environmental | Open in IMG/M |
3300024224 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK14 | Environmental | Open in IMG/M |
3300024246 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK21 | Environmental | Open in IMG/M |
3300024249 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK17 | Environmental | Open in IMG/M |
3300025535 | Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1 (SPAdes) | Environmental | Open in IMG/M |
3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025939 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300027533 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes) | Environmental | Open in IMG/M |
3300027560 | Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes) | Environmental | Open in IMG/M |
3300027655 | Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes) | Environmental | Open in IMG/M |
3300027821 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes) | Environmental | Open in IMG/M |
3300027873 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes) | Host-Associated | Open in IMG/M |
3300027880 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes) | Host-Associated | Open in IMG/M |
3300027886 | Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes) | Environmental | Open in IMG/M |
3300027907 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) | Host-Associated | Open in IMG/M |
3300028587 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3 | Environmental | Open in IMG/M |
3300028596 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14 | Environmental | Open in IMG/M |
3300031152 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S | Environmental | Open in IMG/M |
3300031184 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S | Environmental | Open in IMG/M |
3300031199 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S | Environmental | Open in IMG/M |
3300031538 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1 | Environmental | Open in IMG/M |
3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
3300031740 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 | Environmental | Open in IMG/M |
3300031820 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515 | Environmental | Open in IMG/M |
3300032012 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3 | Environmental | Open in IMG/M |
3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
3300034149 | Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17 | Environmental | Open in IMG/M |
3300034151 | Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17 | Environmental | Open in IMG/M |
Geographical Distribution | |
---|---|
Zoom: | Powered by OpenStreetMap |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
INPgaii200_08164342 | 2228664022 | Soil | MPKEPKPKLRTPKPPKRDLAGPAYRRCARMNMRPDDSLFVAGVVVSGALFAWLMATL |
INPhiseqgaiiFebDRAFT_1014564972 | 3300000364 | Soil | MPKEPKPKLRTPKPPKRDLAGPAYRRCARMNMRPDDSLFVAGVVVSGALFAWLMATL* |
C688J14111_100322732 | 3300001305 | Soil | MRNQSKAKLRTPKPPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGAVFAWLVAAL* |
Ga0055432_100071271 | 3300004022 | Natural And Restored Wetlands | MHKSSKPRLPAPKMPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGALFAWLVSSL* |
Ga0062593_1030781841 | 3300004114 | Soil | MRKESTSKLRTPKPPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGAVFAWLFAVL* |
Ga0062589_1025233832 | 3300004156 | Soil | MRKDSKQKLRTPTHPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGAVFAWLVTAL* |
Ga0062590_1003385862 | 3300004157 | Soil | MRKESKPKLRTPKPPKRDLAGPAYRRFDRRRFDRMVMRPDDSLFVAGVVVSGAVFAWLVAAL* |
Ga0063356_1025071442 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MMRKDSKQKLRTPTHPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGAVFAWLVTAL* |
Ga0062594_1000177184 | 3300005093 | Soil | MRKESKPKLRAPKPPRRDVAGPAYRRFARMNMRPDDTLFLTGIAVSGAVFAWLVAGL* |
Ga0065705_107195312 | 3300005294 | Switchgrass Rhizosphere | MRKESKPKLRTPKPPKRDLAGPAYRRFERMIMRPDDSLFVAGVVVSGAVFAWLVATL* |
Ga0065707_106919351 | 3300005295 | Switchgrass Rhizosphere | MRKEPKAKLRTPKPPKRDLAGPAYRRFDRMNMRPEDSLFVASVVVSGALFAWLMAAL* |
Ga0066388_1000671194 | 3300005332 | Tropical Forest Soil | MRKSSKPRLPAPKMPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGALFALLVSSL* |
Ga0066388_1009609912 | 3300005332 | Tropical Forest Soil | MRKESKPKLRAPKPPRRDLAGPAYRRFARMNMRPDDSLFVAGVVVSGAVFAWLVAAL* |
Ga0070669_1019515981 | 3300005353 | Switchgrass Rhizosphere | PLAGHYSRRQGLQGGMMRKESKPKLRTPKPPKRDLAGPAYRRFDRRRFDRMVMRPDDSLFVAGVVVSGAVFAWLVAAL* |
Ga0070703_100579031 | 3300005406 | Corn, Switchgrass And Miscanthus Rhizosphere | MRKESKPKLRTPKPPKRDLAGPAYRPFDRRRFDRMVMRPDDSLFVAGVVVSGAVFAWLVAAL* |
Ga0070709_114619031 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | MRKGSKPKLRTSKAPRRDLAGPAYRRFARMNMRPDDTLFLTGVAVSGAVFAWLVAAL* |
Ga0070705_1004132252 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | MRKNPSRKLQIPRPPKRDLAGPAYRRFDRMIMRPDDSLFVAGVIVSGALFAWLVSSF* |
Ga0073909_100105732 | 3300005526 | Surface Soil | MLKASKSKQRTPKPPKRDLAGPAYRRFNRMNMRPDDSLFVAGVVVSGAVFAWLVATL* |
Ga0068853_1012086471 | 3300005539 | Corn Rhizosphere | TVCVAIPPGGIMRKESKPKLRAPKPPRRDVAGPAYRRFARMNMRPDDTLFLTGIAVSGAVFAWLVAGL* |
Ga0070695_1006991271 | 3300005545 | Corn, Switchgrass And Miscanthus Rhizosphere | KESKPKLRAPKPPRRYVAGAAYRRFARMNMRPDDTLFLTGIAVSGAVFAWLVAGL* |
Ga0070695_1017455752 | 3300005545 | Corn, Switchgrass And Miscanthus Rhizosphere | MLTAGGAMRKNPSRKLQIPRPPKRDLAGPAYRRFDRMIMRPDDSLFVAGVIVSGALFAWLVSSF* |
Ga0070693_1008009251 | 3300005547 | Corn, Switchgrass And Miscanthus Rhizosphere | VCVAIPPGGIMRKESKPKLRAPKPPRRDVAGPAYRRFARMNMRPDDTLFLTGIAVSGAVFAWLVAGL* |
Ga0070704_1017556652 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | KNPSRKLQIPRPPKRDLAGPAYRRFDRMIMRPDDSLFVAGVIVSGALFAWLVSSF* |
Ga0068864_1015393672 | 3300005618 | Switchgrass Rhizosphere | MRKESKPKLRAPKPPRRDLAGPAYRRFARMNMRPDDTLFLTGIAVSGAVFAWLVAGL* |
Ga0066905_1000107278 | 3300005713 | Tropical Forest Soil | MRKMSQPKQPVRRMPKRDLAGPSYRRFDRMVMRPDDSLFVASVIVSGALFAWLVTLW* |
Ga0066905_1015899962 | 3300005713 | Tropical Forest Soil | MRKSSKPRLPAPKMPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGALFAWLVSSF* |
Ga0068861_1001700833 | 3300005719 | Switchgrass Rhizosphere | MRKESKPKLRAPKPPRRDLAGPAYRRFARTNMRPDDTLFLAGVAISGAVFAWLVAGL* |
Ga0075417_100258633 | 3300006049 | Populus Rhizosphere | MRKEPKAKLRTPKPPKRDLAGPAYRRFDRMNMRPDDSLFVAGVVVSGALFAWLMAAL* |
Ga0075432_102550842 | 3300006058 | Populus Rhizosphere | MRRERTPKLRTPKPPKRDLAGPAYRRFDRMNMRPDDSLFVAGVVVSGALFAWLMAAL* |
Ga0075422_100805354 | 3300006196 | Populus Rhizosphere | LRRGQDADYSRRRDCEGKTMRKERVPKLRTPKPPKRDLAGPAYRRFDRMNMRPDDSLFVAGVVVSGALFAWLMAAL* |
Ga0097621_1018417491 | 3300006237 | Miscanthus Rhizosphere | MRKESKPKLRAPKPPRRDVAGPAYRRFARMNMRPDDTLFLTGIAVSGAVFA |
Ga0074056_111221072 | 3300006574 | Soil | MPKESKSKLRTPKPPKRDLAGPAYRRFDRMIMRPDDSLFVVGVVVSGALFAWLFAAL* |
Ga0074062_125641982 | 3300006606 | Soil | MPKESKSKLRTPKPPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGALFAWLFAAL* |
Ga0075428_1003599642 | 3300006844 | Populus Rhizosphere | MPKNAKPAFPTPKKPKRDLAAPAYRRFDRMVMRPDDSLFVAGVVVSGALFAWLVTSW* |
Ga0075430_1003348794 | 3300006846 | Populus Rhizosphere | EGKTMRRERTPKLRTPKPPKRDLAGPAYRRFDRMNMRPDDSLFVAGVVVSGALFAWLMAAL* |
Ga0075430_1010057652 | 3300006846 | Populus Rhizosphere | MRKTSSRKSQTPRAPKRDLAGPAYRRFDRTIMRPDDSLFVAGVIISGALFAWLVTSW* |
Ga0075434_1014548983 | 3300006871 | Populus Rhizosphere | MRKESKPKLRTPKPPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGAVFAWLVAAL* |
Ga0079217_100953762 | 3300006876 | Agricultural Soil | MRKHANRKSTASRSPRRDIAGPAYRRFERMIMRPDDSLFVAGVVVGGALFAWLITAI* |
Ga0079216_102635472 | 3300006918 | Agricultural Soil | MRKNANRKSTASRSPRRDIAGPAYRRFERMIMRPDDSLFVAGVVVGGALFAWLITAI* |
Ga0079218_102488253 | 3300007004 | Agricultural Soil | MAPSKPARRTSSAAKAPKRDLAGPAYRRFDRMVMRPDDSLFVAGAILGGALFAWLITLL* |
Ga0099791_101308032 | 3300007255 | Vadose Zone Soil | MMLKELKPKLRTPKPPKRDLAGPAYRRFNRMIMRPDDSLFVAGVVVSGAVFAWLVAAL* |
Ga0105250_100646662 | 3300009092 | Switchgrass Rhizosphere | MMRKESKPKLRTPKPPKRDLAGPAYRRFDRRRFDRMVMRPDDSLFVAGVVVSGAVFAWLVAAL* |
Ga0111539_106213602 | 3300009094 | Populus Rhizosphere | MRKEQKPKLRTPKPPKRDLAGPAYRRFDRMNMRPDDSLFVAGVVVSGALFAWLMAAL* |
Ga0066709_1031473002 | 3300009137 | Grasslands Soil | MQKLSDRKLRAPKAPKRDICSPAYRRFERMIMRPDDSLFVAGVIVSGALFAWLVTSW* |
Ga0111538_106693162 | 3300009156 | Populus Rhizosphere | MMRKESKPKLRTPKPPKRDLAGPAYRRFERMIMRPDDSLFVAGVVVSGAVFAWLVATL* |
Ga0075423_118565572 | 3300009162 | Populus Rhizosphere | MMRKESKPKLRTPKPPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGAVFAWLVAAL* |
Ga0105248_114230443 | 3300009177 | Switchgrass Rhizosphere | RKESKPKLRAPKPPRRDVAGPAYRRFARMNMRPDDTLFLTGIAVSGAVFAWLVAGL* |
Ga0105340_10393782 | 3300009610 | Soil | MQKSSKPRLPAPKMPKRDLAGPAYRRFDRMVMRPDDSLFVAGVVVSGALFAWLVSSL* |
Ga0105061_10771862 | 3300009807 | Groundwater Sand | MRKDSNRKLQVARAPQRDVAGPAYRRFDRMVMRPDDSLFVAGIIVSGALFAWLVTIW* |
Ga0126384_100401246 | 3300010046 | Tropical Forest Soil | MRKESKPKLRAPKAPRRDLAGPAYRRFARMNMRPDDSLFVAGVVVSGAVFAWLVAAL* |
Ga0134124_128731451 | 3300010397 | Terrestrial Soil | MRKGSKPKLRTSKAPRRDLAGPAYRRFARMNMRPDDTLFLTGVAVSGAVFAWLVAA |
Ga0134127_101234553 | 3300010399 | Terrestrial Soil | MRKTSNRKLPTPRAPKRDLAGPAYRRFDRMIMRPDDSLFVAGVIVSGALFAWLVSTF* |
Ga0134122_100483143 | 3300010400 | Terrestrial Soil | MMRKESTSKLRTPKPPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGALFAWLFAAL* |
Ga0134121_109707912 | 3300010401 | Terrestrial Soil | MMRKESTSKLRTPKPPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGAVFAWLFAVL* |
Ga0151489_16017022 | 3300011106 | Soil | MMRKESTPKLRTPKPPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGALFAWLFAAL* |
Ga0105246_120019661 | 3300011119 | Miscanthus Rhizosphere | MMPKESKLKLHTPKPPKRDLAGPAYRRFDRRRFDRMVMRPDDSLFVAGVVVSGAVFAWLVAAL* |
Ga0137432_11554481 | 3300011439 | Soil | MQKSSKPRLPAPKMPKRDLAGPAYRRFERMVMRPDDSLFVAGVVVSGALFAWLVSSL* |
Ga0150985_1154782773 | 3300012212 | Avena Fatua Rhizosphere | GGTMRNESKRKLRTPKPPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGAIFAWLVAAL |
Ga0150984_1094592792 | 3300012469 | Avena Fatua Rhizosphere | MMRNQSKAKLRTPKPPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGAVFAWLVAAL* |
Ga0150984_1184071971 | 3300012469 | Avena Fatua Rhizosphere | RKLHTPKPPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGAVFAWLVAAL* |
Ga0157329_10188441 | 3300012491 | Arabidopsis Rhizosphere | MRKERKPKLRTPKPPKRDLAGPAYRRFDRMNMRPDDSLFVAGVVVSGALFAWLMAAL* |
Ga0157338_10369121 | 3300012515 | Arabidopsis Rhizosphere | MMRKESKPKLRTPKPPKRDLAGPAYRRFERMIMRPDDSLFVAGVVVSGAVFAWLMAAL* |
Ga0137397_101327084 | 3300012685 | Vadose Zone Soil | MMLKELKPKLRTPKPPKRDLAGPAYRRFNRMIMRPDDSLFVAGVVISGAVFAWLVAAL* |
Ga0137407_123097152 | 3300012930 | Vadose Zone Soil | MRKDSNRKLQVPRAPKRDVAGPAYRRFDRMVMRPDDSLFVAGIIVSGALFAWLVTIW* |
Ga0164303_103869922 | 3300012957 | Soil | MRKESTSKLRTPKPPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGAVFAWLVATP* |
Ga0164299_106548632 | 3300012958 | Soil | MMLKASKSKQRTPKPPKRDLAGPAYRRFNRMNMRPDDSLFVAGVVVSGAVFAWLVATL* |
Ga0164301_104058352 | 3300012960 | Soil | MMLKASKSKQRTPKPPKRDLAGPAYRRFNRMNMRPDDSLFVAGVVVSGALFAWLFAAL* |
Ga0184605_101937932 | 3300018027 | Groundwater Sediment | MPKAARRKSRAERTPKRDIAGPAYRRVEKCAMRPDDSLFVAAVVLSAALAAWFVTIW |
Ga0184628_100109927 | 3300018083 | Groundwater Sediment | MLKESKQKLRTPKPPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGAVFAWLMAAL |
Ga0196964_102692601 | 3300020202 | Soil | MRKPAKRKSGAPRAPKRDIAGPAYRRFERMIMRPDDSLFVAGVIVSGALFAWLVTVW |
Ga0247695_10119602 | 3300024179 | Soil | MRKESKPKLRAPKPPRRDVAGPAYRRFARMNMRPDDTLFLTGIAVSGAVFAWLVAGL |
Ga0247673_10146602 | 3300024224 | Soil | MRKESKPKLRVPKPPRRDLAGPAYRRFARTNMRPDDTLFLAGVALSGAVFAWLVAGL |
Ga0247680_10264362 | 3300024246 | Soil | MRKESKPKLRVPKPPRRDLAGPAYRRFARMNMRPDDTLFLTGIAVSGAVFAWLVAGL |
Ga0247676_10503382 | 3300024249 | Soil | MRKESKPKLRAPKPPRRDVAGPAYRRFARMNMRPDDTLFLTGIAVSGAVFAWLVA |
Ga0207423_10944342 | 3300025535 | Natural And Restored Wetlands | MHKSSKPRLPAPKMPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGALFAWLVSSL |
Ga0207671_114746251 | 3300025914 | Corn Rhizosphere | GTTVCVAIPPGGIMRKESKPKLRAPKPPRRDVAGPAYRRFARMNMRPDDTLFLTGIAVSGAVFAWLVAGL |
Ga0207657_115072332 | 3300025919 | Corn Rhizosphere | PKPPKRDLAGPAYRRFDRRRFDRMVMRPDDSLFVAGVVVSGAVFAWLVAAL |
Ga0207687_119595262 | 3300025927 | Miscanthus Rhizosphere | TVCVAIPPGGIMRKESKPKLRAPKPPRRDVAGPAYRRFARMNMRPDDTLFLTGIAVSGAVFAWLVAGL |
Ga0207665_110734721 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | MRKGSKPKLRTSKAPRRDLAGPAYRRFARMNMRPDDTLFLTGVAVSGAVFAWRV |
Ga0207711_118224792 | 3300025941 | Switchgrass Rhizosphere | AIPPGGIMRKESKPKLRAPKPPRRDVAGPAYRRFARMNMRPDDTLFLTGIAVSGAVFAWLVAGL |
Ga0207641_124330821 | 3300026088 | Switchgrass Rhizosphere | VAIPPGGIMRKESKPKLRAPKPPRRDVAGPAYRRFARMNMRPDDTLFLTGIAVSGAVFAWLVAGL |
Ga0207676_113998592 | 3300026095 | Switchgrass Rhizosphere | MRKESKPKLRAPKPPRRDLAGPAYRRFARMNMRPDDTLFLTGIAVSGAVFAWLVAGL |
Ga0208185_10299432 | 3300027533 | Soil | MQKSSKPRLPAPKMPKRDLAGPAYRRFDRMVMRPDDSLFVAGVVVSGALFAWLVSSL |
Ga0207981_11092531 | 3300027560 | Soil | MPKESKSKLRTPKPPKRDLAGPAYRRFDRMIMRPDDSLFVAGIVVSGALFAWLFATL |
Ga0209388_12257632 | 3300027655 | Vadose Zone Soil | MLKELKPKLRTPKPPKRDLAGPAYRRFNRMIMRPDDSLFVAGVVVSGAVFAWLVAAL |
Ga0209811_103225102 | 3300027821 | Surface Soil | MLKASKSKQRTPKPPKRDLAGPAYRRFNRMNMRPDDSLFVAGVVVSGAVFAWLVATL |
Ga0209814_100283863 | 3300027873 | Populus Rhizosphere | MRKEPKAKLRTPKPPKRDLAGPAYRRFDRMNMRPDDSLFVAGVVVSGALFAWLMAAL |
Ga0209481_1000161110 | 3300027880 | Populus Rhizosphere | MRRERTPKLRTPKPPKRDLAGPAYRRFDRMNMRPDDSLFVAGVVVSGALFAWLMAAL |
Ga0209486_102835282 | 3300027886 | Agricultural Soil | MRKNANRKSTASRSPRRDIAGPAYRRFERMIMRPDDSLFVAGVVVGGALFAWLITAI |
Ga0207428_111643352 | 3300027907 | Populus Rhizosphere | MRKEQKPKLRTPKPPKRDLAGPAYRRFDRMNMRPDDSLFVAGVVVSGALFAWLMAAL |
Ga0247828_109621611 | 3300028587 | Soil | MRKSSKPRLPVPKMPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGALFAWLVSSL |
Ga0247821_108532892 | 3300028596 | Soil | MRKSSKPRLPVPKMPKRDLAGPAYRRFDRMIMRPDDSLFVAGIVVSGALFAWLVSSL |
Ga0307501_100073422 | 3300031152 | Soil | MRKESTSKLRTPKPPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGALFAWLFAAL |
Ga0307499_1000100612 | 3300031184 | Soil | MRKESTSKLRTPKPPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGAVFAWLVAAL |
Ga0307495_100616082 | 3300031199 | Soil | MRKEPKPKLRTPKPPKRDVAGPAYRRFARMNMRPDDGLFVAGVVVSGAVFAWLLAAL |
Ga0310888_105844432 | 3300031538 | Soil | MRKEPKAKLRTPKPPKRDLAGPAYRRFDRMNMRPEDSLFVASVVVSGALFAWLMAAL |
Ga0307469_102672442 | 3300031720 | Hardwood Forest Soil | MAKESKPKLSTPKPPKRDLAGPAYRRFDRRRFDRMVMRPDDSLFVAGVVVSGAVFAWLVAAL |
Ga0307469_115962902 | 3300031720 | Hardwood Forest Soil | MRKELKPKLRTPKPPKRDLAGPAYRRFDRMIMRPDDSLFVAGIVVSGALFAWLFAAL |
Ga0307469_124606742 | 3300031720 | Hardwood Forest Soil | MQKSSKPRLPAPKMPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVLSGVLFAWLVSSL |
Ga0307468_1000249694 | 3300031740 | Hardwood Forest Soil | MRKESTAKLRTPKPPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGALFAWLFAAL |
Ga0307473_102201752 | 3300031820 | Hardwood Forest Soil | MQKSSKPRLPAPKMPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGVLFAWLVSSL |
Ga0310902_103368491 | 3300032012 | Soil | TPGRALQSDSRLQGGMMLKASKSKQRTPKPPKRDLAGPAYRRFNRMNMRPDDSLFVAGVVVSGAVFAWLVAAL |
Ga0307471_1000313725 | 3300032180 | Hardwood Forest Soil | MPKERKPKLRTPKPPKRDLAGPAYRRFDRRRFDRMVMRPDDSLFVAGVVVSGAVFAWLVAAL |
Ga0307471_1025519002 | 3300032180 | Hardwood Forest Soil | MQKLSDRKLRAPKAPKRDICSPAYRRFERMIMRPDDSLFVAGVIVSGALFAWLVTSW |
Ga0364929_0104042_279_455 | 3300034149 | Sediment | MMLKESKQKLRTPKPPKRDLAGPAYRRFDRMIMRPDDSLFVAGVVVSGAVFAWLMAAL |
Ga0364935_0291935_343_516 | 3300034151 | Sediment | MRKHPNRRLHVPRAPKRDLAGPAYRRFDRMLMRPDDSLFVAGVVVSGAVFAWLVTLW |
⦗Top⦘ |