NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F094090

Metagenome Family F094090

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F094090
Family Type Metagenome
Number of Sequences 106
Average Sequence Length 44 residues
Representative Sequence MLDKITKGTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMTYAQ
Number of Associated Samples 88
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 24.53 %
% of genes near scaffold ends (potentially truncated) 96.23 %
% of genes from short scaffolds (< 2000 bps) 99.06 %
Associated GOLD sequencing projects 83
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (84.906 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(16.981 % of family members)
Environment Ontology (ENVO) Unclassified
(71.698 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(92.453 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 58.33%    β-sheet: 0.00%    Coil/Unstructured: 41.67%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF02493MORN 3.77
PF10544T5orf172 0.94
PF05970PIF1 0.94
PF13588HSDR_N_2 0.94
PF07669Eco57I 0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 106 Family Scaffolds
COG2849Antitoxin component YwqK of the YwqJK toxin-antitoxin moduleDefense mechanisms [V] 3.77
COG4642Uncharacterized conserved proteinFunction unknown [S] 3.77
COG0507ATPase/5’-3’ helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)Replication, recombination and repair [L] 0.94


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A84.91 %
All OrganismsrootAll Organisms15.09 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000115|DelMOSum2011_c10084766All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → alpha proteobacterium HIMB51087Open in IMG/M
3300000148|SI47jul10_100mDRAFT_c1035388Not Available709Open in IMG/M
3300000973|BBAY93_10160615Not Available564Open in IMG/M
3300001347|JGI20156J14371_10085278Not Available1086Open in IMG/M
3300001347|JGI20156J14371_10097830Not Available955Open in IMG/M
3300001354|JGI20155J14468_10222350Not Available558Open in IMG/M
3300003478|JGI26238J51125_1104706All Organisms → cellular organisms → Bacteria532Open in IMG/M
3300004097|Ga0055584_101831538Not Available625Open in IMG/M
3300004276|Ga0066610_10089714Not Available1063Open in IMG/M
3300004276|Ga0066610_10117892Not Available901Open in IMG/M
3300005400|Ga0066867_10200226Not Available732Open in IMG/M
3300006193|Ga0075445_10312535Not Available530Open in IMG/M
3300009071|Ga0115566_10487737Not Available700Open in IMG/M
3300009077|Ga0115552_1153757Not Available964Open in IMG/M
3300009172|Ga0114995_10325415Not Available845Open in IMG/M
3300009172|Ga0114995_10659627Not Available572Open in IMG/M
3300009193|Ga0115551_1497153Not Available520Open in IMG/M
3300009409|Ga0114993_10205887All Organisms → Viruses → Predicted Viral1519Open in IMG/M
3300009409|Ga0114993_10245390Not Available1373Open in IMG/M
3300009422|Ga0114998_10485772Not Available578Open in IMG/M
3300009472|Ga0115554_1215456Not Available775Open in IMG/M
3300009476|Ga0115555_1249994Not Available721Open in IMG/M
3300009496|Ga0115570_10431929Not Available557Open in IMG/M
3300009497|Ga0115569_10326329Not Available672Open in IMG/M
3300009498|Ga0115568_10293346Not Available721Open in IMG/M
3300009508|Ga0115567_10198381Not Available1300Open in IMG/M
3300009508|Ga0115567_10555701Not Available695Open in IMG/M
3300009508|Ga0115567_10601281Not Available663Open in IMG/M
3300009508|Ga0115567_10892758Not Available528Open in IMG/M
3300009512|Ga0115003_10506989Not Available706Open in IMG/M
3300009512|Ga0115003_10563090Not Available666Open in IMG/M
3300009526|Ga0115004_10203096Not Available1187Open in IMG/M
3300009526|Ga0115004_10373495Not Available845Open in IMG/M
3300009526|Ga0115004_10393184Not Available821Open in IMG/M
3300009593|Ga0115011_11894855Not Available541Open in IMG/M
3300009785|Ga0115001_10970353Not Available509Open in IMG/M
3300010297|Ga0129345_1332919Not Available523Open in IMG/M
3300010300|Ga0129351_1072542Not Available1395Open in IMG/M
3300010368|Ga0129324_10158557Not Available938Open in IMG/M
3300010883|Ga0133547_11465167All Organisms → Viruses → Predicted Viral1284Open in IMG/M
3300012936|Ga0163109_10520969Not Available871Open in IMG/M
3300017697|Ga0180120_10088778All Organisms → Viruses → Predicted Viral1354Open in IMG/M
3300017752|Ga0181400_1226096Not Available510Open in IMG/M
3300017824|Ga0181552_10213401Not Available990Open in IMG/M
3300017956|Ga0181580_10227366All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1297Open in IMG/M
3300017956|Ga0181580_10927546Not Available542Open in IMG/M
3300017967|Ga0181590_10384001All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → alpha proteobacterium HIMB51001Open in IMG/M
3300017969|Ga0181585_10406418Not Available928Open in IMG/M
3300017985|Ga0181576_10745926Not Available582Open in IMG/M
3300017986|Ga0181569_10374703All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → alpha proteobacterium HIMB5977Open in IMG/M
3300017986|Ga0181569_10795704Not Available620Open in IMG/M
3300017986|Ga0181569_10945589Not Available558Open in IMG/M
3300018416|Ga0181553_10615950Not Available572Open in IMG/M
3300018417|Ga0181558_10421271Not Available705Open in IMG/M
3300018428|Ga0181568_10315202All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → alpha proteobacterium HIMB51273Open in IMG/M
3300020051|Ga0181555_1225932Not Available699Open in IMG/M
3300020175|Ga0206124_10028164All Organisms → cellular organisms → Bacteria2660Open in IMG/M
3300020368|Ga0211674_10086060Not Available829Open in IMG/M
3300020374|Ga0211477_10262409Not Available590Open in IMG/M
3300020435|Ga0211639_10424794Not Available547Open in IMG/M
3300020442|Ga0211559_10403303All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria631Open in IMG/M
3300020445|Ga0211564_10198378Not Available994Open in IMG/M
3300020463|Ga0211676_10280767Not Available960Open in IMG/M
3300021375|Ga0213869_10289412Not Available702Open in IMG/M
3300021957|Ga0222717_10258353Not Available1009Open in IMG/M
3300021957|Ga0222717_10475942Not Available677Open in IMG/M
3300021958|Ga0222718_10161368Not Available1256Open in IMG/M
3300021959|Ga0222716_10262263All Organisms → Viruses → Predicted Viral1061Open in IMG/M
3300021960|Ga0222715_10607133Not Available564Open in IMG/M
3300021961|Ga0222714_10333978Not Available820Open in IMG/M
3300021964|Ga0222719_10202422Not Available1356Open in IMG/M
3300021964|Ga0222719_10358223Not Available923Open in IMG/M
3300022227|Ga0187827_10626593Not Available623Open in IMG/M
3300022928|Ga0255758_10261371All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → alpha proteobacterium HIMB5760Open in IMG/M
(restricted) 3300022931|Ga0233433_10126666Not Available1205Open in IMG/M
(restricted) 3300023109|Ga0233432_10177194Not Available1088Open in IMG/M
(restricted) 3300024264|Ga0233444_10308826Not Available680Open in IMG/M
3300025623|Ga0209041_1056017Not Available1188Open in IMG/M
3300025672|Ga0209663_1220953Not Available515Open in IMG/M
3300025676|Ga0209657_1164679Not Available613Open in IMG/M
3300025681|Ga0209263_1045650All Organisms → Viruses → Predicted Viral1488Open in IMG/M
3300025695|Ga0209653_1193351Not Available561Open in IMG/M
3300025696|Ga0209532_1061101All Organisms → Viruses → Predicted Viral1454Open in IMG/M
3300025707|Ga0209667_1045806Not Available1653Open in IMG/M
3300025722|Ga0209660_1054597Not Available1492Open in IMG/M
3300025727|Ga0209047_1113641Not Available901Open in IMG/M
3300025821|Ga0209600_1149471Not Available651Open in IMG/M
3300025830|Ga0209832_1179282Not Available606Open in IMG/M
3300025874|Ga0209533_1126220All Organisms → Viruses → Predicted Viral1197Open in IMG/M
3300025880|Ga0209534_10279393Not Available781Open in IMG/M
3300025880|Ga0209534_10281927Not Available776Open in IMG/M
3300025881|Ga0209309_10452055Not Available542Open in IMG/M
3300025886|Ga0209632_10396103Not Available658Open in IMG/M
3300025890|Ga0209631_10492531Not Available547Open in IMG/M
3300025894|Ga0209335_10303754Not Available677Open in IMG/M
3300025897|Ga0209425_10242802Not Available933Open in IMG/M
3300025897|Ga0209425_10508648Not Available552Open in IMG/M
3300027779|Ga0209709_10318453Not Available653Open in IMG/M
3300027813|Ga0209090_10274354Not Available845Open in IMG/M
3300027813|Ga0209090_10426195Not Available633Open in IMG/M
3300027838|Ga0209089_10216738Not Available1122Open in IMG/M
3300027848|Ga0209390_10528866Not Available768Open in IMG/M
3300028198|Ga0257121_1170216Not Available718Open in IMG/M
3300031519|Ga0307488_10306088Not Available1021Open in IMG/M
3300031774|Ga0315331_11080049Not Available541Open in IMG/M
3300032073|Ga0315315_10238959Not Available1694Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine16.98%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine14.15%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh13.21%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine12.26%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine9.43%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine8.49%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water7.55%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient3.77%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.83%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater1.89%
FreshwaterEnvironmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater0.94%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.94%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater0.94%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine0.94%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.94%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine0.94%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.94%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.94%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater0.94%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface0.94%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000148Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 100mEnvironmentalOpen in IMG/M
3300000973Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY93Host-AssociatedOpen in IMG/M
3300001347Pelagic Microbial community sample from North Sea - COGITO 998_met_06EnvironmentalOpen in IMG/M
3300001354Pelagic Microbial community sample from North Sea - COGITO 998_met_05EnvironmentalOpen in IMG/M
3300003478Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNAEnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004276Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_165mEnvironmentalOpen in IMG/M
3300005400Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261EnvironmentalOpen in IMG/M
3300006193Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNAEnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009077Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328EnvironmentalOpen in IMG/M
3300009172Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154EnvironmentalOpen in IMG/M
3300009193Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321EnvironmentalOpen in IMG/M
3300009409Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150EnvironmentalOpen in IMG/M
3300009422Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138EnvironmentalOpen in IMG/M
3300009472Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404EnvironmentalOpen in IMG/M
3300009476Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407EnvironmentalOpen in IMG/M
3300009496Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524EnvironmentalOpen in IMG/M
3300009497Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503EnvironmentalOpen in IMG/M
3300009498Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426EnvironmentalOpen in IMG/M
3300009508Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412EnvironmentalOpen in IMG/M
3300009512Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88EnvironmentalOpen in IMG/M
3300009526Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90EnvironmentalOpen in IMG/M
3300009593Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 MetagenomeEnvironmentalOpen in IMG/M
3300009785Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130EnvironmentalOpen in IMG/M
3300010297Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNAEnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300012936Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaGEnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017752Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22EnvironmentalOpen in IMG/M
3300017824Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017956Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017967Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017969Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017985Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017986Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018416Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018417Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018428Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020051Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011504AT metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020175Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2EnvironmentalOpen in IMG/M
3300020368Marine microbial communities from Tara Oceans - TARA_B100001027 (ERX556049-ERR599093)EnvironmentalOpen in IMG/M
3300020374Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)EnvironmentalOpen in IMG/M
3300020435Marine microbial communities from Tara Oceans - TARA_B100000586 (ERX556070-ERR599086)EnvironmentalOpen in IMG/M
3300020442Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)EnvironmentalOpen in IMG/M
3300020445Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)EnvironmentalOpen in IMG/M
3300020463Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)EnvironmentalOpen in IMG/M
3300021375Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022227Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300022928Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaGEnvironmentalOpen in IMG/M
3300022931 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MGEnvironmentalOpen in IMG/M
3300023109 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MGEnvironmentalOpen in IMG/M
3300024264 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MGEnvironmentalOpen in IMG/M
3300025623Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025672Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI073_LV_135m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025676Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025681Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_100m (SPAdes)EnvironmentalOpen in IMG/M
3300025695Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025696Pelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes)EnvironmentalOpen in IMG/M
3300025707Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_165m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025722Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025727Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_165m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025821Pelagic marine microbial communities from North Sea - COGITO_mtgs_110421 (SPAdes)EnvironmentalOpen in IMG/M
3300025830Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407 (SPAdes)EnvironmentalOpen in IMG/M
3300025874Pelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes)EnvironmentalOpen in IMG/M
3300025880Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)EnvironmentalOpen in IMG/M
3300025881Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412 (SPAdes)EnvironmentalOpen in IMG/M
3300025886Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025890Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)EnvironmentalOpen in IMG/M
3300025894Pelagic Microbial community sample from North Sea - COGITO 998_met_09 (SPAdes)EnvironmentalOpen in IMG/M
3300025897Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)EnvironmentalOpen in IMG/M
3300027779Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)EnvironmentalOpen in IMG/M
3300027813Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)EnvironmentalOpen in IMG/M
3300027838Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)EnvironmentalOpen in IMG/M
3300027848Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01 (SPAdes)EnvironmentalOpen in IMG/M
3300028198Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_100EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031774Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915EnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2011_1008476623300000115MarineMLDKITKGTIDGTKSAKDFTVKKWKRFIRKRALKRVEK
SI47jul10_100mDRAFT_103538823300000148MarineMFNKITKSTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLM
BBAY93_1016061523300000973Macroalgal SurfaceMLDKITRGTIDGTKSAKDFTVKKWKRFIRKRALKRVEKL
JGI20156J14371_1008527823300001347Pelagic MarineMLDKITKSTIEGTKSAKDFTINKWKRFIRKRTLKRVAKK*
JGI20156J14371_1009783033300001347Pelagic MarineMLDKITKGTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMTYAQ
JGI20155J14468_1022235023300001354Pelagic MarineMLDKITKGTIDGTKSAKDFTVKKWKRFIRKRALKRVEKLMTYAQKQPE
JGI26238J51125_110470613300003478MarineMFNKITKSTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMAYAQKQPEDYT
Ga0055584_10183153833300004097Pelagic MarineMFDKITKGTIDGTKSAKDFTVKKWKRFIRKRALKRVEKLM
Ga0066610_1008971433300004276MarineMFDKITKSTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMAYAQ
Ga0066610_1011789223300004276MarineMFNKITKSTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMAYAQKQPED
Ga0066867_1020022613300005400MarineMFDKITKGTVDATISTKDFTVKKWKRFIRKRALKRVEKQMKYA
Ga0075445_1031253513300006193MarineMFDKITKGTIEGTKSAKDFTIKKWKRFIRKRALKRVEKLMTYAQKQPE
Ga0115566_1048773713300009071Pelagic MarineMFDKITKGTIDGTKSAKDFTIKKWKKFIRKRALKRVEKLMAYAQKQPEDYTKEEM
Ga0115552_115375733300009077Pelagic MarineMLDKITKGTIDGTKSAKDFTVKKWKRFIRKRALKRVEKLMTYAQKQ
Ga0114995_1032541533300009172MarineMLDKITKSTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMTYAQK
Ga0114995_1065962713300009172MarineMLDKITKGTIDGTKSAKDFTIKKRKRFIRKRALKRVEKLMTYAQKQPEDYT
Ga0115551_149715313300009193Pelagic MarineIRIKMLDKITKSTIEGTKSAKDFTINKWKRFIRKRTLKRVAKK*
Ga0114993_1020588733300009409MarineMFNKITKSTIDGTKSAKDFTIKKWKKFIRKRALKRVEKLMLYAQKKPEDY
Ga0114993_1024539033300009409MarineMFNKITKSTIDGTKSAKDFTIKKWKKFIRKRALKRVE
Ga0114998_1048577213300009422MarineMFDKITKGTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMAYAQK
Ga0115554_121545633300009472Pelagic MarineMLDKITKGTIDGTKSAKDFSIKKWKRFIRKRALKR
Ga0115555_124999423300009476Pelagic MarineMLDKITKGTIDGTKSAKDFSIKKLKRFIRKRALKRVEKLMTYAQ
Ga0115570_1043192923300009496Pelagic MarineIKMLDKITKSTIEGTKSAKDFTINKWKRFIRKRTLKRVAKK*
Ga0115569_1032632923300009497Pelagic MarineMLDKITKETIQGTKSAKDFTIKKWKRFIRKRALKRVE
Ga0115568_1029334623300009498Pelagic MarineMLDKITKGTIDGTKSAKDFTVKKWKRFIRKRALKRVEKLMTYAQKQPEDY
Ga0115567_1019838113300009508Pelagic MarineMLDKITKGTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMTYAQKKPEDY
Ga0115567_1055570123300009508Pelagic MarineMLDKITKGTIDGTKSAKDFTVKKWKRFIRKRALKRVEKLMTYAQKQPED
Ga0115567_1060128123300009508Pelagic MarineMLDKITKETIEGTKSAKDFTIKKWKRFIRKRALKRVEKLMTYAQKQPGDY
Ga0115567_1089275823300009508Pelagic MarineMLDKITKGTIDGTKSAKDFSIKKWKRFIRKRALKRVEKLMTYAQKKPEDYT
Ga0115003_1050698913300009512MarineMFDRITKGTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMTYAQKQPED
Ga0115003_1056309013300009512MarineMLDKITKGTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMTYAQKQPED
Ga0115004_1020309643300009526MarineMFDKITKGTIEGTKSAKDFTIKKWKRFIRKRALKRVEKLMTYAQKQPEDYTKEE
Ga0115004_1037349533300009526MarineMLDKITKGTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMTYAQKQPEDYTKE
Ga0115004_1039318433300009526MarineMLDKITKGTIDGTKSAKDFTIKKWKRFIRKRALKRIEKLITYAQKKPEDYTKEEM
Ga0115011_1189485523300009593MarineMFDKIKRGTVDATISTKDFTVKKWKRFIRKRALKRVEKQMKYAQKKPED
Ga0115001_1097035323300009785MarineMFDKITKGTIDGTKSAKDFTIKKWKKFIRTRALKRVEKHMAYAQKKPQDYTKEEM
Ga0129345_133291923300010297Freshwater To Marine Saline GradientMLSKITKGTLEKTKSAKDFTIKKWKIFIRKRAIKRVEKLMAYAQ
Ga0129351_107254243300010300Freshwater To Marine Saline GradientMFDKITKTTIDGTKSAKDFTLKKWKRFIRKRALKRVEKLMA*
Ga0129324_1015855713300010368Freshwater To Marine Saline GradientMFDKITKSTIEGTKSAKSFTIRKWKKFIRKRALKRVEKFMAY
Ga0133547_1146516733300010883MarineMFNKITKSTIDGTKSAKDFTIKKWKKFIRKRALKRVEKLMLYAQK
Ga0163109_1052096913300012936Surface SeawaterMFDKITKGTVDATISTKDYTVKKWKRFIRKRAIKRVEK
Ga0180120_1008877843300017697Freshwater To Marine Saline GradientMLDKITKSTIDGTKSAKDFTVKKWKRFIRKRALKRVEKLMTYAQKQPED
Ga0181400_122609623300017752SeawaterMLDKITKGTIDGTKSAKDFTVKKWKRFIRKRALKRVEKLMTYA
Ga0181552_1021340113300017824Salt MarshMLNKITKTTIDGTKSAKDFTIKKWKKFIRKRALKRVEKLMAYAQKKPEDYTK
Ga0181580_1022736623300017956Salt MarshMLDKLTKETIEGTKSAKDFTIKKWKRFIRKRALKRVEKLMAFAQKKPED
Ga0181580_1092754613300017956Salt MarshMFDKITKSTIDGTKSVKDFTIKKWKKFIRKKALKRV
Ga0181590_1038400133300017967Salt MarshMFGKITKETIEGTKSAKDFTVKKWKKFIRKRALKRVEK
Ga0181585_1040641823300017969Salt MarshMLDKLTKETIEGTKSAKDFTIKKWKRFIRKRALKRVEKLM
Ga0181576_1074592613300017985Salt MarshMLDKITKGTIDGTKSAKDFTVKKWKRFIRKRALKRVEKLMTYAQ
Ga0181569_1037470333300017986Salt MarshMLDKITKTTIDGTKSAKDFTVKRWKKFIRKRALKRVEK
Ga0181569_1079570423300017986Salt MarshMLDKLTKETIEGTKSAKDFTIKKWKRFIRKRALKRVEKLMAFAQKKPE
Ga0181569_1094558913300017986Salt MarshMLDKITKGTVDSTKSAKDFTIKKWKKFIRKRALKRVEKLM
Ga0181553_1061595023300018416Salt MarshMFDKITKETIEGTKSAKDFTIKKWKRFIRKRALKRVEKL
Ga0181558_1042127113300018417Salt MarshMFNKITKGTIDGTKSAKDFTVKKWKKFIRKRALKRVQKQMEYAQKKPED
Ga0181568_1031520213300018428Salt MarshMFDKITKTTIDGTKSAKDFTLKKWKRFIRKRALKRVEKL
Ga0181555_122593213300020051Salt MarshMLDKITKTTIDGTKSAKDFTVKRWKKFIRKRALKRVEKLMAY
Ga0206124_1002816433300020175SeawaterMLDKITKSTIEGTKSAKDFTINKWKRFIRKRTLKRVAKK
Ga0211674_1008606023300020368MarineMFDKLTKGTISGTKSAKDFTVKKWKRFIRKKALKR
Ga0211477_1026240913300020374MarineMLDKITKGTIDGTKSAKDFTIKKWKRFIRKRALKRVEK
Ga0211639_1042479413300020435MarineMFKKITDGTIEGTKSAKDFTVKKWKRFIRKRALKRVEKQMK
Ga0211559_1040330313300020442MarineMFDKITKGTVDVTISTKDYTIKKWKKFIRKRAIKRVEKNLKYLQKDVSDYTK
Ga0211564_1019837813300020445MarineMFKKITDGTIEGTKSAKDFTVKKWKRFIRKRALKR
Ga0211676_1028076713300020463MarineMLDKITKGTIDGTKSAKDFTIKKWKKFIRKRALKRVEKLM
Ga0213869_1028941213300021375SeawaterMLDKITKGTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMTYAQKQPE
Ga0222717_1025835333300021957Estuarine WaterMLDKITKETIQGTKSAKDFTIKKWKKFIRKRALKRVE
Ga0222717_1047594213300021957Estuarine WaterMFDKITKGTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMTYAQKQPEDYTKE
Ga0222718_1016136813300021958Estuarine WaterMLDKITKETIQGTKSAKDFTIKKWKRFIRKRALKRVEKLMT
Ga0222716_1026226313300021959Estuarine WaterMLDKITKGTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMT
Ga0222715_1060713323300021960Estuarine WaterMLDKITKNTIDGTKSAKDFTVKKWKKFIRKRALKRVEKLMAYAQKKPEDYTKEEM
Ga0222714_1033397833300021961Estuarine WaterMFDKITKSTIDGTKSVKDFTIKKWKKFIRKKALKRVEKNIAYLQKKPEDYTKE
Ga0222719_1020242213300021964Estuarine WaterMLDKITKETIQGTKSAKDFTIKKWKRFIRKRALKRVEKLMTYAQKQPE
Ga0222719_1035822333300021964Estuarine WaterMLDKITKGTIDGTKSAKDFTLKKWKRFIRKRALKRVEK
Ga0187827_1062659313300022227SeawaterMFKKITDGTIEGTKSAKDFTVKKWKRFIRKRALKRVEKQMKYAQK
Ga0255758_1026137143300022928Salt MarshMFNKITKGTIDGTKSAKDFTVKKWKKFIRKRALKRVQKQMEY
(restricted) Ga0233433_1012666623300022931SeawaterMLDKITKGTIDGTKSAKDFTVKKWKRFIRKRALKRVEKL
(restricted) Ga0233432_1017719433300023109SeawaterMFDKITKSTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMAYAQKQPEDYTKEEM
(restricted) Ga0233444_1030882633300024264SeawaterMFDKIKDSTIDVTKSTKDFTVKKWKKFIRKRALKRVGKLIAYAQKKPEDYTKE
Ga0209041_105601713300025623MarineMFNKITKSTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMAYAQK
Ga0209663_122095323300025672MarineMFNKITKSTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMAYAQKQPEDY
Ga0209657_116467913300025676MarineMFNKITKSTIDGTKSAKDFTIKKWKRFIRKRALKRVEK
Ga0209263_104565013300025681MarineMFNKITKSTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMA
Ga0209653_119335123300025695MarineMFDKITKNTMVGTKSAKDFTIKKWKKFIRKRALKRVEKLMAYAQKKPEDYTKE
Ga0209532_106110113300025696Pelagic MarineMLDKITKSTIDGTKSAKDFTVKKWKRFIRKRALKRVEKLMTYAQKQPEDYT
Ga0209667_104580613300025707MarineMFNKITKSTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMAYAQ
Ga0209660_105459713300025722MarineMFDKITKSTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMAYAQKQ
Ga0209047_111364113300025727MarineMFNKITKSTIDGTKSAKDFTIKKWKRFIRKRALKRVE
Ga0209600_114947113300025821Pelagic MarineMLDKITKGTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMAYAQKQPEDYTK
Ga0209832_117928223300025830Pelagic MarineMLDKITKSTIDGTKSAKDFTVKKWKRFIRKRALKRVEKLMTYAQ
Ga0209533_112622013300025874Pelagic MarineMLDKITKGTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMTYAQKQPEDYT
Ga0209534_1027939323300025880Pelagic MarineMLDKITKGTIDGTKSAKDFTIKKWKRFIRKRALKR
Ga0209534_1028192723300025880Pelagic MarineMLDKITKGTIEGTKSAKDFTIKKWKRFIRKRALKRVEKLMTYAQKQPED
Ga0209309_1045205523300025881Pelagic MarineMFDKIKDSTIDATKSTKDFTVKKWKKFIRKRALKRVEKLIAYAQKKPEDY
Ga0209632_1039610313300025886Pelagic MarineMLDKITKGTIDGTKSAKDFTVKKWKRFIRKRALKRV
Ga0209631_1049253113300025890Pelagic MarineMLDKITKGTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMTYAQKQP
Ga0209335_1030375413300025894Pelagic MarineMLDKITKGTIDGTKSAKDFTVKKWKRFIRKRALKRVEKLMTYAQKQPEDYTKE
Ga0209425_1024280213300025897Pelagic MarineMFDKIKDSTIDATKSTKDFTVKKWKKFIRKRALKRVEKLIA
Ga0209425_1050864813300025897Pelagic MarineMFDKITKGTIDGTKSAKDFTIKKWKKFIRKRALKRVEKLMTYAQKQPEDY
Ga0209709_1031845313300027779MarineMLDKITKGTIDGTKSAKDFTIKKWKRFIRKRALKRVEKL
Ga0209090_1027435413300027813MarineMLDKITKGTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLM
Ga0209090_1042619513300027813MarineMLDKITKGTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMTYAQKQPEDYTKEE
Ga0209089_1021673813300027838MarineMFNKITKSTIDGTKSAKDFTIKKWKKFIRKRALKRVEKLMLYAQKKPE
Ga0209390_1052886613300027848FreshwaterMFKKIIKTTLESTRLAKDFTVNKWKKFIRKRALKRV
Ga0257121_117021613300028198MarineMFDKITKSTIDGTKSAKDFTIKKWKRFIRKRALKRV
Ga0307488_1030608833300031519Sackhole BrineMLDKITKGTIDGTKSAKDFTIKKWKRFIRKRALKRVEKLMTYAQKQPEDYTK
Ga0315331_1108004913300031774SeawaterMFDKIKDSTIDATKSTKDFTVKKWKKFIRKRALKRVE
Ga0315315_1023895933300032073SeawaterMFDKIKDSTIDATKSTKDFTVKKWKKFIRKRALKRVEKLIAYAQKKPEDYTKEE


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