Metagenome / Metatranscriptome Family F094125

Basic Information
Family ID	F094125
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	87 residues
Representative Sequence	MSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Number of Associated Samples	103
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	66.98 %
% of genes near scaffold ends (potentially truncated)	43.40 %
% of genes from short scaffolds (< 2000 bps)	90.57 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (84.906 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (31.132 % of family members)
Environment Ontology (ENVO)	Unclassified (33.019 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.509 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.68% β-sheet: 0.00% Coil/Unstructured: 54.32%
Feature Viewer

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Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF07369	DUF1488	24.53
PF01841	Transglut_core	12.26
PF08379	Bact_transglu_N	3.77
PF03401	TctC	0.94
PF04055	Radical_SAM	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1305	Transglutaminase-like enzyme, putative cysteine protease	Posttranslational modification, protein turnover, chaperones [O]	3.77
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.94

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.91 %
Unclassified	root	N/A	15.09 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.91 %
Unclassified	root	N/A	15.09 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.91 %
Unclassified	root	N/A	15.09 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	82.08 %
Unclassified	root	N/A	15.09 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	70.75 %
Unclassified	root	N/A	15.09 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	26.42 %
Unclassified	root	N/A	15.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.09 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.72 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.09 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	1.89 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig833947	Not Available	631	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100547825	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300000712\|JGI11925J11888_100598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	842	Open in IMG/M
3300001283\|JGI11804J14045_103576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	525	Open in IMG/M
3300002568\|C688J35102_118993829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	623	Open in IMG/M
3300004157\|Ga0062590_101418812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	692	Open in IMG/M
3300005093\|Ga0062594_100771493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	883	Open in IMG/M
3300005159\|Ga0066808_1006985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	967	Open in IMG/M
3300005185\|Ga0066811_1013983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	627	Open in IMG/M
3300005344\|Ga0070661_100227385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1433	Open in IMG/M
3300005353\|Ga0070669_100400646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1122	Open in IMG/M
3300005435\|Ga0070714_100689474	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300005456\|Ga0070678_102291154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	512	Open in IMG/M
3300005535\|Ga0070684_100170816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1975	Open in IMG/M
3300005843\|Ga0068860_101964316	All Organisms → cellular organisms → Bacteria → Proteobacteria	607	Open in IMG/M
3300006038\|Ga0075365_11054602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	572	Open in IMG/M
3300006042\|Ga0075368_10008918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3595	Open in IMG/M
3300006178\|Ga0075367_10028628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3180	Open in IMG/M
3300006195\|Ga0075366_10203600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1204	Open in IMG/M
3300006871\|Ga0075434_102062636	Not Available	575	Open in IMG/M
3300006904\|Ga0075424_100212065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2058	Open in IMG/M
3300009011\|Ga0105251_10308391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	718	Open in IMG/M
3300009012\|Ga0066710_101462898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1056	Open in IMG/M
3300009098\|Ga0105245_10244110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1742	Open in IMG/M
3300009176\|Ga0105242_10034883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4033	Open in IMG/M
3300009553\|Ga0105249_10102079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2699	Open in IMG/M
3300009553\|Ga0105249_10199747	All Organisms → cellular organisms → Bacteria → Proteobacteria	1956	Open in IMG/M
3300009840\|Ga0126313_10580431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	902	Open in IMG/M
3300010036\|Ga0126305_10310774	Not Available	1025	Open in IMG/M
3300010042\|Ga0126314_10793530	Not Available	697	Open in IMG/M
3300010147\|Ga0126319_1320311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	641	Open in IMG/M
3300010373\|Ga0134128_10537146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1303	Open in IMG/M
3300010396\|Ga0134126_10335808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1765	Open in IMG/M
3300010397\|Ga0134124_10657461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1033	Open in IMG/M
3300010403\|Ga0134123_10255247	All Organisms → cellular organisms → Bacteria → Proteobacteria	1528	Open in IMG/M
3300010854\|Ga0126360_1040713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	903	Open in IMG/M
3300010854\|Ga0126360_1096736	Not Available	530	Open in IMG/M
3300010864\|Ga0126357_1133832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	750	Open in IMG/M
3300010865\|Ga0126346_1005396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	906	Open in IMG/M
3300010877\|Ga0126356_10300604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	877	Open in IMG/M
3300011332\|Ga0126317_10561869	Not Available	511	Open in IMG/M
3300012212\|Ga0150985_117495001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	591	Open in IMG/M
3300012898\|Ga0157293_10260690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	554	Open in IMG/M
3300012909\|Ga0157290_10109194	Not Available	830	Open in IMG/M
3300012911\|Ga0157301_10031837	All Organisms → cellular organisms → Bacteria → Proteobacteria	1250	Open in IMG/M
3300012912\|Ga0157306_10146443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	741	Open in IMG/M
3300012958\|Ga0164299_10072978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1693	Open in IMG/M
3300014968\|Ga0157379_10015904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6614	Open in IMG/M
3300015077\|Ga0173483_10557997	Not Available	622	Open in IMG/M
3300015372\|Ga0132256_100461514	All Organisms → cellular organisms → Bacteria → Proteobacteria	1378	Open in IMG/M
3300015373\|Ga0132257_100406966	All Organisms → cellular organisms → Bacteria → Proteobacteria	1655	Open in IMG/M
3300018000\|Ga0184604_10054467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1116	Open in IMG/M
3300018066\|Ga0184617_1064246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	963	Open in IMG/M
3300018067\|Ga0184611_1016111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2235	Open in IMG/M
3300018072\|Ga0184635_10055568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1532	Open in IMG/M
3300018077\|Ga0184633_10152397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1198	Open in IMG/M
3300018082\|Ga0184639_10049570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2169	Open in IMG/M
3300018465\|Ga0190269_11691964	Not Available	533	Open in IMG/M
3300019263\|Ga0184647_1244550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	650	Open in IMG/M
3300019263\|Ga0184647_1250249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	672	Open in IMG/M
3300020016\|Ga0193696_1097966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	754	Open in IMG/M
3300020064\|Ga0180107_1184827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	692	Open in IMG/M
3300021951\|Ga0222624_1073231	All Organisms → cellular organisms → Bacteria → Proteobacteria	1336	Open in IMG/M
3300022467\|Ga0224712_10398476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	656	Open in IMG/M
3300023266\|Ga0247789_1071884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	662	Open in IMG/M
3300025920\|Ga0207649_10760700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	754	Open in IMG/M
3300025927\|Ga0207687_10017995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4661	Open in IMG/M
3300027181\|Ga0208997_1005632	All Organisms → cellular organisms → Bacteria → Proteobacteria	1576	Open in IMG/M
3300027866\|Ga0209813_10009990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	2443	Open in IMG/M
3300028381\|Ga0268264_12417075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	531	Open in IMG/M
3300028704\|Ga0307321_1131417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
3300028708\|Ga0307295_10026811	All Organisms → cellular organisms → Bacteria → Proteobacteria	1431	Open in IMG/M
3300028712\|Ga0307285_10228665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	525	Open in IMG/M
3300028717\|Ga0307298_10089506	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300028720\|Ga0307317_10081608	Not Available	1060	Open in IMG/M
3300028721\|Ga0307315_10044625	Not Available	1221	Open in IMG/M
3300028793\|Ga0307299_10210934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	730	Open in IMG/M
3300028802\|Ga0307503_10309577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	795	Open in IMG/M
3300028810\|Ga0307294_10193263	Not Available	699	Open in IMG/M
3300028811\|Ga0307292_10270483	All Organisms → cellular organisms → Bacteria → Proteobacteria	708	Open in IMG/M
3300028824\|Ga0307310_10168632	Not Available	1019	Open in IMG/M
3300028872\|Ga0307314_10029038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	1303	Open in IMG/M
3300030844\|Ga0075377_11524062	All Organisms → cellular organisms → Bacteria → Proteobacteria	645	Open in IMG/M
3300030986\|Ga0308154_104394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	805	Open in IMG/M
3300030989\|Ga0308196_1027493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	700	Open in IMG/M
3300030997\|Ga0073997_10016442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1167	Open in IMG/M
3300031058\|Ga0308189_10080213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	988	Open in IMG/M
3300031091\|Ga0308201_10269116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	594	Open in IMG/M
3300031096\|Ga0308193_1075567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	545	Open in IMG/M
3300031114\|Ga0308187_10211706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	685	Open in IMG/M
3300031124\|Ga0308151_1019379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	693	Open in IMG/M
3300031125\|Ga0308182_1006491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	833	Open in IMG/M
3300031184\|Ga0307499_10267990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	551	Open in IMG/M
3300031421\|Ga0308194_10365166	Not Available	518	Open in IMG/M
3300031423\|Ga0308177_1012742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	667	Open in IMG/M
3300031446\|Ga0170820_14821946	All Organisms → cellular organisms → Bacteria → Proteobacteria	666	Open in IMG/M
3300031892\|Ga0310893_10271209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	709	Open in IMG/M
3300032000\|Ga0310903_10780277	Not Available	521	Open in IMG/M
3300032017\|Ga0310899_10444329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	629	Open in IMG/M
3300032075\|Ga0310890_11869763	Not Available	500	Open in IMG/M
3300034149\|Ga0364929_0081902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1004	Open in IMG/M
3300034447\|Ga0370544_09821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	703	Open in IMG/M
3300034672\|Ga0314797_080407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	641	Open in IMG/M
3300034676\|Ga0314801_052596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	811	Open in IMG/M
3300034678\|Ga0314803_074710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	627	Open in IMG/M
3300034681\|Ga0370546_037545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	712	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.30%
Host-Associated	Host-Associated	21.70%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.98%
Plants	Host-Associated → Plants	21.70%
Aquatic	Environmental → Aquatic	11.32%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.26%
Freshwater	Environmental → Aquatic → Freshwater	5.66%
Sediment	Environmental → Aquatic → Sediment	5.66%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.72%
Roots	Host-Associated → Plants → Roots	4.72%
Floodplain	Environmental → Terrestrial → Floodplain	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.49%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.66%
Loam	Environmental → Terrestrial → Soil → Loam	5.66%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	4.72%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.77%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.94%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	45.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.49%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.66%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	4.72%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.83%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	31.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.60%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.66%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	4.72%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	4.72%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.77%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.77%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.83%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.94%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.94%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000712	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2	Environmental	Open in IMG/M
3300001283	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005159	Soil and rhizosphere microbial communities from Laval, Canada - mgLPB	Environmental	Open in IMG/M
3300005185	Soil and rhizosphere microbial communities from Laval, Canada - mgHPB	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300010854	Boreal forest soil eukaryotic communities from Alaska, USA - W4-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010864	Boreal forest soil eukaryotic communities from Alaska, USA - W3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010865	Boreal forest soil eukaryotic communities from Alaska, USA - C3-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010877	Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300019263	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300020064	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT27_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023266	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027181	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300030844	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030986	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_143 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030989	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_197 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030997	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031096	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_194 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031124	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_140 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031125	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_153 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031423	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_148 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034447	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_119 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034672	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034676	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034678	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_15657210	2124908045	Soil	MAERQLRSRLKMKESAMSAGLETSLETLPETSKALKHRRGAAACGVFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
INPhiseqgaiiFebDRAFT_1005478252	3300000364	Soil	MSRPPDSSIALKYRRDAAACERFAANARTAADRALLLRMQRSLLGRADHQDWLDGLPPVPPARPKVLALPRRPDRVECHHPR*
JGI11925J11888_1005982	3300000712	Forest Soil	MSTGLETSKALERSKALRHRREAAACGVFATNAKSATDRALLLRMQRSLLTRAYHEDWLDGLPPAPPAGCNSLSLPARS*
JGI11804J14045_1035762	3300001283	Forest Soil	MSTGLETSKALERSKALRHRREAAACGVFATNAKSATDRDLLLRMQRSLLTRAYHEDWLDGLPPAPPAGCNSLSLPARS*
C688J35102_1189938292	3300002568	Soil	MAERHLRSRLKTKESAMSAGLETSLETLSETSKALKHRREAAACGFFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSLALPARS*
Ga0062590_1014188122	3300004157	Soil	MAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS*
Ga0062594_1007714932	3300005093	Soil	MSTGPGTSKALRHRREAAACGVFAANAKSAADRELLLRMQRSLLTRAHHEDWLDGSPPVPPAGCNSLALPARS*
Ga0066808_10069851	3300005159	Soil	MSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS*
Ga0066811_10139832	3300005185	Soil	AGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS*
Ga0070661_1002273852	3300005344	Corn Rhizosphere	MSAGLETSLETLPETSKALKHRRGAAACGVFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS*
Ga0070669_1004006461	3300005353	Switchgrass Rhizosphere	IQAPMAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS*
Ga0070714_1006894742	3300005435	Agricultural Soil	MSRPPDSSIASKYRRDAAACGQFAVNARTAADRALLLRMQRSLLGRADHQDWLDGLPPVPPARPKVLALPRRPDRVECHHPR*
Ga0070678_1022911541	3300005456	Miscanthus Rhizosphere	MSAGLETSLETLSETSKALKHRREAAACGVFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSLALPARS*
Ga0070684_1001708162	3300005535	Corn Rhizosphere	MAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRRGAAACGVFAVNAKSATDRELLLRMQCSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS*
Ga0068860_1019643162	3300005843	Switchgrass Rhizosphere	MSTGPGTSKALRHRREAAACGVFAANAKSAADRELLLRMQRSLLTRAHHEDWLDGSPP
Ga0075365_110546022	3300006038	Populus Endosphere	AGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDREMLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS*
Ga0075368_100089183	3300006042	Populus Endosphere	MSAGLETSLETLPETSKALKHRRGAAACGVFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSLALPARS*
Ga0075367_100286282	3300006178	Populus Endosphere	MAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRRGAAACGVFAINAKSATDRELLLRMQCSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS*
Ga0075366_102036002	3300006195	Populus Endosphere	MSAGLETSLETLPETSKALKHRRGAAACGVFAVNAKSATDRELLLRMQCSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS*
Ga0075434_1020626361	3300006871	Populus Rhizosphere	MSAGLETSLETLPETSKALKHRRGAAACGVFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPP
Ga0075424_1002120655	3300006904	Populus Rhizosphere	MSTVPGTSKALRHRREAAACGVFAANAKSAADRELLLRMQRSLLTRAHHEDWLDGSPPVPPAGCNSLALPARS*
Ga0105251_103083911	3300009011	Switchgrass Rhizosphere	MAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREADACGVFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLLPVPPAGCNSLALPARS*
Ga0066710_1014628983	3300009012	Grasslands Soil	MSRPPDSSIALKYRRDAAACERFAANARTAADRALLLGMQRSLLGRADHQDWLDGLPPVPPARPNVLALPRRPDRVECHHPR
Ga0105245_102441105	3300009098	Miscanthus Rhizosphere	ETSKALKHRREADACGVFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLLPVPPAGCNSLALPARS*
Ga0105242_100348837	3300009176	Miscanthus Rhizosphere	LETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS*
Ga0105249_101020795	3300009553	Switchgrass Rhizosphere	MAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATERELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS*
Ga0105249_101997472	3300009553	Switchgrass Rhizosphere	MSTGPGTSKALRHRREAAACGVFAANAKSAADRELLLRMQRSLLTRAHHEDWLDGSPPVPSAGCNSLAVPARS*
Ga0126313_105804311	3300009840	Serpentine Soil	MAERHLRSRLKTKESALSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPALS*
Ga0126305_103107741	3300010036	Serpentine Soil	MAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPALS*
Ga0126314_107935301	3300010042	Serpentine Soil	MAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGAFAANAKSATDRELLLRMQRLLHTRAYHQDWLDGLPPAPPAGCNSLALPALS*
Ga0126319_13203112	3300010147	Soil	MAERHLRSRLKTKESAMSAGLETSLETLSETSKALKHRREAAACGFFAVNAKSAADRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS*
Ga0134128_105371462	3300010373	Terrestrial Soil	MAERYLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS*
Ga0134126_103358083	3300010396	Terrestrial Soil	MAERHLRSRLKTKESAMSAGLETSLETLSETSKALKHRREAAACGVFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSLALPARS*
Ga0134124_106574611	3300010397	Terrestrial Soil	MAERHLRSRLKTKESAMSAGLETSLETLSETSKALKHRREAAACGVFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS*
Ga0134123_102552474	3300010403	Terrestrial Soil	AGLETSLETLPETSKALKHRRGAAACGVFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS*
Ga0126360_10407131	3300010854	Boreal Forest Soil	MSTGLKPPKALETSKALRHRREAAACAVFAANAKSVTDRELLLRMQRSLLTRAYHEDWLDGLPPIPPAGCNSLSLPARS*
Ga0126360_10967362	3300010854	Boreal Forest Soil	MAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGVFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLLPVPPAGCNSLALPARS*
Ga0126357_11338322	3300010864	Boreal Forest Soil	MAERHLRSRLKTKESAMSTGLETSLETLPETSKALKHRREAAACGAFAANAKSATDRELLLRMQRSLLTRAYHQDWLDELPPAPPAGCNSLALPARS*
Ga0126346_10053961	3300010865	Boreal Forest Soil	MSTGLKPPKTLETSKALRHRREAAACGVFAANAKSLTDRELLLRMQRSLLTRAYHEDWLDGLPPIPPAGCNSLSLPARS*
Ga0126356_103006043	3300010877	Boreal Forest Soil	MAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLLPVPPAGCNSLALPARS*
Ga0126317_105618692	3300011332	Soil	MAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGVFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSLAIPARS*
Ga0150985_1174950011	3300012212	Avena Fatua Rhizosphere	SAMSAGLETSLETLSETSKALKHRREAAACGFFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSLALPARS*
Ga0157293_102606902	3300012898	Soil	ERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS*
Ga0157290_101091941	3300012909	Soil	MAERHWRSRLKTKESAMSAGLETSLETLPETSKALKHRRGAAACGVFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALP
Ga0157301_100318371	3300012911	Soil	TLPETSKALKHRRGAAACGVFAVNAKSATDRELLLRMQCSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS*
Ga0157306_101464432	3300012912	Soil	MAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRRGAAACGIFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS*
Ga0164299_100729782	3300012958	Soil	MAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSLALPARS*
Ga0157379_100159046	3300014968	Switchgrass Rhizosphere	MAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRRGAAACGVFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS*
Ga0173483_105579972	3300015077	Soil	MSTGPETSKALRHRREAAACGVFAANAKSAADRELLLRMQRSLLTRAYHEDWLEGLPPPVPPAGCNSLALPARS*
Ga0132256_1004615141	3300015372	Arabidopsis Rhizosphere	MAERHLRSRLKTKESAMSAGLETSLETLSETSKALKHRREAAACGVFAVNAKSARDRELLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSLALPARS*
Ga0132257_1004069662	3300015373	Arabidopsis Rhizosphere	MSTGPGTSKALRHRREAAACGVFAANAKSAADRELLLRMQRSLLTRAYHEDWLDGSPPVPPAGCNSLALPARS*
Ga0184604_100544672	3300018000	Groundwater Sediment	MSAGLETSLETLSETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0184617_10642461	3300018066	Groundwater Sediment	MSAGLETSLETLPETSKALKHRREAAACGVFAVNAQSATDRELLLHMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0184611_10161112	3300018067	Groundwater Sediment	MSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRIQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0184635_100555682	3300018072	Groundwater Sediment	MSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQWSLLTRGYHQDWLDGLPPAPPAGCNSLALPARS
Ga0184633_101523971	3300018077	Groundwater Sediment	MSAGLETSLETLSETSKALKHRREAAACGFFAVNAKSAADRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0184639_100495702	3300018082	Groundwater Sediment	MSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSLALPARS
Ga0190269_116919642	3300018465	Soil	MAERHLRSRLKTKESALSAGLETSLETLPETSKALKHRREAAACGVFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLP
Ga0184647_12445502	3300019263	Groundwater Sediment	LAYPTSLRRIQAPMAERHLRSRLKTKESAMSAGLETSLETLSETSKALKHRREAAACGFFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSLALPARS
Ga0184647_12502492	3300019263	Groundwater Sediment	LAYPTSLRRIQAPMAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0193696_10979662	3300020016	Soil	MSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0180107_11848271	3300020064	Groundwater Sediment	SLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0222624_10732311	3300021951	Groundwater Sediment	MSAGLETSLETLPETSKALKHRREAAACGAFAANAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0224712_103984761	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	CMLSGSLAYPTSLRGIQAPMAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0247789_10718842	3300023266	Soil	MSTGPGTSKALRHRREAAACGVFAANAKSAADRELLLRMQRSLLTRAHHEDWLDGSPPVPPAGCNSL
Ga0207649_107607002	3300025920	Corn Rhizosphere	MSAGLETSLETLPETSKALKHRRGAAACGVFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0207687_100179958	3300025927	Miscanthus Rhizosphere	MAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0208997_10056324	3300027181	Forest Soil	MSTGLETSKALERSKALRHRREAAACGVFATNAKSATDRDLLLRMQRSLLTRAYHEDWLDGLPPAPPAGCNSLSLPARS
Ga0209813_100099902	3300027866	Populus Endosphere	MSAGLETSLETLPETSKALKHRRGAAACGVFAINAKSATDRELLLRMQCSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0268264_124170752	3300028381	Switchgrass Rhizosphere	SLETLPETSKALKHRRGAAACGVFAVNAKSATDRELLLRMQCSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0307321_11314171	3300028704	Soil	AERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGFFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSLALPALS
Ga0307295_100268114	3300028708	Soil	MSAGLETSLETLPETSKALKHRREAAACGAFAANAKSATGRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0307285_102286651	3300028712	Soil	LETLSETSKALKHRREAAACGFFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSLALPARS
Ga0307298_100895061	3300028717	Soil	MSAGLETSLETLSETSKALKHRREAAACGFFAVNAKSAADRELLLRMQRSLLTRAYHQDWLDGLPSVPPAG
Ga0307317_100816081	3300028720	Soil	MSAGLETSLETLSETSKALKHRREAAACGFFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPVP
Ga0307315_100446252	3300028721	Soil	MSAGLETSLETLSETSKALKHRREAAACGFFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSLALPARS
Ga0307299_102109341	3300028793	Soil	SLAYPTSLRRIQAPMAERHLRSRLKTKESAMSAGLETSLETLLETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSLALPARS
Ga0307503_103095772	3300028802	Soil	RIQAPMAERHLRSRLKTKESAMSAGLETSLETLSETSKALKHRREAAACGFFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSLALPARS
Ga0307294_101932632	3300028810	Soil	MSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPALS
Ga0307292_102704831	3300028811	Soil	MSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAP
Ga0307310_101686321	3300028824	Soil	MSAGLETSLETLSETSKALKHRREAAACGFFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSL
Ga0307314_100290382	3300028872	Soil	MSAGLETSLETLSETSKALKHRREAAACGFFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0075377_115240621	3300030844	Soil	MSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAT
Ga0308154_1043942	3300030986	Soil	MAERHLRSRLKTKESAMSAGLETSLETLSETSKALKHRREAAACGFFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSLALPARS
Ga0308196_10274932	3300030989	Soil	MSAGLETSLETLPETSKALKHRREAAACGVFAVNAQSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0073997_100164421	3300030997	Soil	SLRRIQAPMAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGVFAVNAQSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0308189_100802133	3300031058	Soil	AGLETSLETLPETSKALKHRREADACGVFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSLALPARS
Ga0308201_102691162	3300031091	Soil	AGLETSLETLPETSKALKHRREADACGVFAVNAKSATDRELLLRMQRSLLTRAHHQDWLDGLLPVPPAGCNSLALPARS
Ga0308193_10755671	3300031096	Soil	MLSGSLAYPTSLRRIQAPMAERHLRSRLKTKESAMSAGLETSLETLSETSKALKHRREAAACGFFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0308187_102117062	3300031114	Soil	RIQAPMAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGAFAANAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0308151_10193792	3300031124	Soil	MSTGLETSKALERSKALRHRREAAACGVFATNAKSATDRDLLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSLALPARS
Ga0308182_10064911	3300031125	Soil	SLETLSETSKALKHRREAAACGFFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSLALPARS
Ga0307499_102679901	3300031184	Soil	SLAYPTSLRRIQAPMAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0308194_103651662	3300031421	Soil	MLSGSLAYPTSLRRIQAPMAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGVFAVNAQSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0308177_10127422	3300031423	Soil	SLRRIQAPMAERHLRSRLKTKESAMSAGLETSLETLSETSKALKHRREAAACGFFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSLALPARS
Ga0170820_148219462	3300031446	Forest Soil	MSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLAL
Ga0310893_102712092	3300031892	Soil	LDHWHTPASLRRIQAPMAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0310903_107802771	3300032000	Soil	LSGSLAYPTSLRRIQAPMAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0310899_104443291	3300032017	Soil	TSKALKHLREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSLALPARS
Ga0310890_118697631	3300032075	Soil	MSAGLETSLETLSETSKALKHRREAAACGVFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPAR
Ga0364929_0081902_65_358	3300034149	Sediment	MAERHLRSRLKTKESAMSAGLETSLETLSETSKALKHRREAAACGFFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0370544_09821_33_326	3300034447	Soil	MAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGAFAANAKSATGRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0314797_080407_15_308	3300034672	Soil	MAERHLRSRLKTKESAMSAGLETSLETLSETSKALKHRREAAACGVFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPVPPAGCNSLALPARS
Ga0314801_052596_466_759	3300034676	Soil	MAERHLRSRLKTKESAMSAGLETSLETLPETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGMPPAPPAGCNSLALPARS
Ga0314803_074710_245_538	3300034678	Soil	MAERHLRSRLKTKESAMSAGLETSLETLSETSKALKHRREAAACGAFAVNAKSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS
Ga0370546_037545_1_240	3300034681	Soil	AGLETSLETLPETSKALKHRREAAACGVFAVNAQSATDRELLLRMQRSLLTRAYHQDWLDGLPPAPPAGCNSLALPARS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094125

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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