Metagenome Family F094128

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094128
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	59 residues
Representative Sequence	VLENGVVVGRIFKVPVAPQDRPWMWASGHNGDIKRAAHGYEPTREAAMAAFAKSWRC
Number of Associated Samples	40
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	16.83 %
% of genes near scaffold ends (potentially truncated)	50.94 %
% of genes from short scaffolds (< 2000 bps)	82.08 %
Associated GOLD sequencing projects	37
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (59.434 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (30.189 % of family members)
Environment Ontology (ENVO)	Unclassified (44.340 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.057 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 14.12% β-sheet: 22.35% Coil/Unstructured: 63.53%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF01627	Hpt	2.83
PF04392	ABC_sub_bind	2.83
PF13670	PepSY_2	1.89
PF01068	DNA_ligase_A_M	1.89
PF03401	TctC	0.94
PF13545	HTH_Crp_2	0.94
PF07505	DUF5131	0.94
PF00989	PAS	0.94
PF13676	TIR_2	0.94
PF03481	Sua5_C	0.94
PF11295	DUF3096	0.94
PF00216	Bac_DNA_binding	0.94
PF00816	Histone_HNS	0.94
PF00353	HemolysinCabind	0.94
PF11306	DUF3108	0.94
PF12244	DUF3606	0.94
PF07345	DUF1476	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.83
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.89
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.89
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.94
COG2916	DNA-binding protein H-NS	Transcription [K]	0.94
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.94
COG4422	Bacteriophage protein gp37	Mobilome: prophages, transposons [X]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
All Organisms	root	All Organisms	40.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
cellular organisms	root	All Organisms → cellular organisms	39.62 %
Viruses	superkingdom	All Organisms → Viruses	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.62 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	32.08 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	2.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	28.30 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2.83 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	13.21 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.43 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.26 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.66 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	2.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.94 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.94 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.26 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.72 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.94 %
Roseicella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseicella	0.94 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.26 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.94 %
Roseicella frigidaeris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseicella → Roseicella frigidaeris	0.94 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.94 %
Bradyrhizobium iriomotense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium iriomotense	0.94 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.94 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.26 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
Bradyrhizobium sp. SRL28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	0.94 %
Roseicella frigidaeris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseicella → Roseicella frigidaeris	0.94 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.94 %
Bradyrhizobium iriomotense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium iriomotense	0.94 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.94 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2040502001\|FACENC_GAMC6GA01AVAYI	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium iriomotense	517	Open in IMG/M
2070309009\|GPKNP_GG3DY5401B453Q	Not Available	509	Open in IMG/M
3300000955\|JGI1027J12803_101748625	Not Available	647	Open in IMG/M
3300000955\|JGI1027J12803_105780251	Not Available	936	Open in IMG/M
3300005332\|Ga0066388_100106227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3288	Open in IMG/M
3300005332\|Ga0066388_100704987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1616	Open in IMG/M
3300005332\|Ga0066388_101552172	All Organisms → cellular organisms → Bacteria → Proteobacteria	1162	Open in IMG/M
3300005332\|Ga0066388_101752603	Not Available	1102	Open in IMG/M
3300005332\|Ga0066388_101774706	All Organisms → cellular organisms → Bacteria → Proteobacteria	1096	Open in IMG/M
3300005332\|Ga0066388_103517339	Not Available	800	Open in IMG/M
3300005332\|Ga0066388_104175064	Not Available	736	Open in IMG/M
3300005332\|Ga0066388_104367379	Not Available	720	Open in IMG/M
3300005332\|Ga0066388_106809579	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300005332\|Ga0066388_107787685	Not Available	536	Open in IMG/M
3300005713\|Ga0066905_100745768	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	844	Open in IMG/M
3300005713\|Ga0066905_100788000	Not Available	823	Open in IMG/M
3300005713\|Ga0066905_100855771	Not Available	792	Open in IMG/M
3300005713\|Ga0066905_101150164	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
3300005713\|Ga0066905_101174048	Not Available	685	Open in IMG/M
3300005764\|Ga0066903_100659789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1832	Open in IMG/M
3300005764\|Ga0066903_100829651	Not Available	1659	Open in IMG/M
3300005764\|Ga0066903_100974674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	1546	Open in IMG/M
3300005764\|Ga0066903_101320104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1349	Open in IMG/M
3300005764\|Ga0066903_101545721	Not Available	1255	Open in IMG/M
3300005764\|Ga0066903_101640244	All Organisms → Viruses → Predicted Viral	1221	Open in IMG/M
3300005764\|Ga0066903_101786823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1174	Open in IMG/M
3300005764\|Ga0066903_102520577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	996	Open in IMG/M
3300005764\|Ga0066903_103236679	Not Available	880	Open in IMG/M
3300005764\|Ga0066903_103256260	Not Available	878	Open in IMG/M
3300005764\|Ga0066903_103356595	Not Available	864	Open in IMG/M
3300005764\|Ga0066903_103570221	Not Available	838	Open in IMG/M
3300005764\|Ga0066903_106427510	Not Available	613	Open in IMG/M
3300005764\|Ga0066903_107112663	Not Available	580	Open in IMG/M
3300005764\|Ga0066903_107429212	Not Available	566	Open in IMG/M
3300005764\|Ga0066903_108442910	Not Available	525	Open in IMG/M
3300005937\|Ga0081455_10995482	Not Available	519	Open in IMG/M
3300005937\|Ga0081455_11036819	Not Available	507	Open in IMG/M
3300005981\|Ga0081538_10158601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1010	Open in IMG/M
3300005983\|Ga0081540_1022225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3748	Open in IMG/M
3300006038\|Ga0075365_10016872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4455	Open in IMG/M
3300006038\|Ga0075365_10095573	Not Available	2029	Open in IMG/M
3300006038\|Ga0075365_10098030	Not Available	2005	Open in IMG/M
3300006038\|Ga0075365_10196773	All Organisms → cellular organisms → Bacteria	1411	Open in IMG/M
3300006038\|Ga0075365_10264931	All Organisms → cellular organisms → Bacteria → Proteobacteria	1208	Open in IMG/M
3300006038\|Ga0075365_10452957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	906	Open in IMG/M
3300006038\|Ga0075365_10930016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	613	Open in IMG/M
3300006051\|Ga0075364_10610870	Not Available	745	Open in IMG/M
3300006058\|Ga0075432_10533316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	528	Open in IMG/M
3300006177\|Ga0075362_10215185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	938	Open in IMG/M
3300006844\|Ga0075428_101424765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	727	Open in IMG/M
3300006844\|Ga0075428_101721563	Not Available	654	Open in IMG/M
3300006845\|Ga0075421_100444309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1550	Open in IMG/M
3300006845\|Ga0075421_100619660	Not Available	1269	Open in IMG/M
3300006845\|Ga0075421_101305232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	803	Open in IMG/M
3300006845\|Ga0075421_101337504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	791	Open in IMG/M
3300006845\|Ga0075421_101432769	Not Available	759	Open in IMG/M
3300006846\|Ga0075430_101394914	Not Available	576	Open in IMG/M
3300006853\|Ga0075420_100496256	Not Available	1054	Open in IMG/M
3300006880\|Ga0075429_100459385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1116	Open in IMG/M
3300009094\|Ga0111539_10674209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1204	Open in IMG/M
3300009094\|Ga0111539_10841238	Not Available	1068	Open in IMG/M
3300009094\|Ga0111539_13328787	Not Available	517	Open in IMG/M
3300009100\|Ga0075418_10374292	Not Available	1522	Open in IMG/M
3300009100\|Ga0075418_10762686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1044	Open in IMG/M
3300009100\|Ga0075418_11729951	Not Available	680	Open in IMG/M
3300009100\|Ga0075418_11848923	Not Available	657	Open in IMG/M
3300009137\|Ga0066709_100169012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2827	Open in IMG/M
3300009147\|Ga0114129_11088530	Not Available	1001	Open in IMG/M
3300009147\|Ga0114129_13075702	Not Available	546	Open in IMG/M
3300009156\|Ga0111538_12264947	Not Available	682	Open in IMG/M
3300010043\|Ga0126380_10294010	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1151	Open in IMG/M
3300010043\|Ga0126380_10636558	Not Available	846	Open in IMG/M
3300010047\|Ga0126382_10413197	Not Available	1057	Open in IMG/M
3300010047\|Ga0126382_11011203	Not Available	729	Open in IMG/M
3300010361\|Ga0126378_12239229	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	624	Open in IMG/M
3300010362\|Ga0126377_10547187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1196	Open in IMG/M
3300010362\|Ga0126377_11120068	Not Available	856	Open in IMG/M
3300010362\|Ga0126377_11301374	Not Available	799	Open in IMG/M
3300010362\|Ga0126377_11460152	Not Available	757	Open in IMG/M
3300010362\|Ga0126377_11979783	Not Available	659	Open in IMG/M
3300010362\|Ga0126377_12197345	Not Available	628	Open in IMG/M
3300012948\|Ga0126375_10776953	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	755	Open in IMG/M
3300015371\|Ga0132258_10110374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6508	Open in IMG/M
3300015371\|Ga0132258_10471521	Not Available	3133	Open in IMG/M
3300015371\|Ga0132258_10563030	All Organisms → cellular organisms → Bacteria → Proteobacteria	2858	Open in IMG/M
3300015371\|Ga0132258_10754563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2451	Open in IMG/M
3300015371\|Ga0132258_13426139	Not Available	1088	Open in IMG/M
3300015372\|Ga0132256_101141096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	893	Open in IMG/M
3300015373\|Ga0132257_103392984	Not Available	580	Open in IMG/M
3300015374\|Ga0132255_100144516	All Organisms → cellular organisms → Bacteria	3307	Open in IMG/M
3300016422\|Ga0182039_10198604	Not Available	1598	Open in IMG/M
3300018027\|Ga0184605_10017844	Not Available	2813	Open in IMG/M
3300026325\|Ga0209152_10133433	Not Available	946	Open in IMG/M
3300027909\|Ga0209382_10218440	Not Available	2177	Open in IMG/M
3300027909\|Ga0209382_10533443	Not Available	1288	Open in IMG/M
3300027909\|Ga0209382_11550893	Not Available	657	Open in IMG/M
3300027909\|Ga0209382_11562363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseicella → Roseicella frigidaeris	654	Open in IMG/M
3300031546\|Ga0318538_10097666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1512	Open in IMG/M
3300031720\|Ga0307469_10877935	Not Available	829	Open in IMG/M
3300032091\|Ga0318577_10605189	Not Available	521	Open in IMG/M
3300032180\|Ga0307471_100179770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2085	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	53.77%
Host-Associated	Host-Associated	46.23%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.83%
Plants	Host-Associated → Plants	46.23%
Aquatic	Environmental → Aquatic	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	52.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	26.42%
Roots	Host-Associated → Plants → Roots	10.38%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.43%
Sediment	Environmental → Aquatic → Sediment	0.94%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	30.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.47%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	22.64%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	9.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	30.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.47%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.21%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	9.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.60%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	30.19%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	25.47%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.26%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	9.43%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	6.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.77%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2040502001	Soil microbial communities from sample at FACE Site 2 North Carolina CO2+	Environmental	Open in IMG/M
2070309009	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCE_1425640	2040502001	Soil	KIVGRIFFLDAVGPQGRPWMWASGHNGDYRRAAHGHEATREQAMAAFAKSWRRE
GPKNP_07074590	2070309009	Soil	GEWRDDDFDVLEDGVVVGRIFKVPVAPQDRSWMWASGHSADTIKRAAHGYEATREAAMAAFRKSWRRE
JGI1027J12803_1017486251	3300000955	Soil	ADGKLVGRIFKVPIAPQNRTWMWASGHNRGIYHAAHGYEPTREDAMAAFAKSWRG*
JGI1027J12803_1057802511	3300000955	Soil	WNQDDYDVLEDGVIVGRIFKVPIAPQDQPWMWASGHNGEIRRAAHGYEPTREAAMAAFVKSWRH*
Ga0066388_1001062278	3300005332	Tropical Forest Soil	EDGVIVGRIFLSPAASRDRPWMWASGYNGDIKRAAYGYEPTREAAMAAFAKSWRR*
Ga0066388_1007049871	3300005332	Tropical Forest Soil	VLENGVVVGRIFLVPVAPQGRPWMWASGHGGQIKRAAHGYEPTREAAMAAFAESWQRQ*
Ga0066388_1015521722	3300005332	Tropical Forest Soil	VLEDGVVVGRIFKVPGAPQDRPWMWASGHGGHIERAAHGYEPKREAAMAAFAKSWRR
Ga0066388_1017526031	3300005332	Tropical Forest Soil	VLEDGVVVGRIFFLDAVGPQGRPWMWASGHNSDIKRAAHGYEATREAAMAASAKSWRR*
Ga0066388_1017747063	3300005332	Tropical Forest Soil	VLQDGIIVGRIFLSPAAPQERPWMWASGHNADICRAAFGYEPSREAAMAAFANSWRKE*
Ga0066388_1035173393	3300005332	Tropical Forest Soil	VGRIFHLEAAAPEGRPWMWASGHNGDIKRAAHGYEATREAAMAAFAKSWRRQ*
Ga0066388_1041750642	3300005332	Tropical Forest Soil	VLEDRVIVGVGPHGRVWASGHNGDIKRASYGYEQTREAAMGAFAKSWRRE*
Ga0066388_1043673791	3300005332	Tropical Forest Soil	LRDDDYDVEDDVIVGRIFLVPVAPEGRPWMWASGHNGDIKRAAHGYEPTREAAMAAFAKSWRRE*
Ga0066388_1068095791	3300005332	Tropical Forest Soil	RIFFLDAVAPEGRPWMWAGGHSAATVKRAAHGYAATREEAMAAFAKSWRR*
Ga0066388_1077876851	3300005332	Tropical Forest Soil	VLEEGVVVGRIFKVPVAPEGRPWMWVSGHGGHHIERAAHGYEATREDAMAAFAKSWRRD*
Ga0066905_1007457683	3300005713	Tropical Forest Soil	LENGVIVGRIFKVPIAPQDRTWMWASSHNGHIRRAAHGDEATCEEAVAAFAKSWRRE*
Ga0066905_1007880002	3300005713	Tropical Forest Soil	VLENGVVVSRIFASTLSGRRAAPGVWASGHNGEISRAAHGFEATREAAMAAFAKSWRR*
Ga0066905_1008557712	3300005713	Tropical Forest Soil	SGQWRDDDYDVLENGVVVGRIFTVPTAPAGRPWMWASGHDGQIKRAVHGYAETCEAAMAA
Ga0066905_1011501641	3300005713	Tropical Forest Soil	LENGVIVGRIFKVPIAPQDRHWMWASGRNGHIRLSAHGYEATREAAMAAFAKSWRRE*
Ga0066905_1011740481	3300005713	Tropical Forest Soil	RIFFLDAVGPQGRPWMWASGHSADSIKRAAHGYEPTREAAMMSASAFASSFLAAIASFI*
Ga0066903_1006597892	3300005764	Tropical Forest Soil	VSEDDYDVLEDGRVVGRIFKVPVAPQSRPWMWASGHSGHITRAAHGYEQIREAAMAAFAKSWREKEGVK*
Ga0066903_1008296512	3300005764	Tropical Forest Soil	VGRIFFLDAVAPEGRPWMWASGHGGHIERAAHGYEPTREAAMAAFAKSWRQE*
Ga0066903_1009607391	3300005764	Tropical Forest Soil	DYDVLENGEVVGRIFHLDAAAPESRPWMRASGHGRHMKRAAHGYAATREEAMAAFAKSWRRT*
Ga0066903_1009746742	3300005764	Tropical Forest Soil	VLEDGVVVGRIFKVPGAPQDRPWMWASGHGGHIERAAHGYEPKREAAMAAFAKSWRRE*
Ga0066903_1013201042	3300005764	Tropical Forest Soil	VLEDGKVVGRIFMVPTAPQGRPWMWASGHGGHHIERAAHGYEATREAAMAAFAKSWRRQ*
Ga0066903_1015457214	3300005764	Tropical Forest Soil	VLENGKIVGRIFFLDAAAPEGRPWMWASGHNGDIKRAAHGYEATREAAMVAFAKSWRRE*
Ga0066903_1016402443	3300005764	Tropical Forest Soil	LEDGKVVGRIFHLEAAAPEGRPWMWASGHGGHIKRAAHGYEATREAAMAAFAKSWRGK*
Ga0066903_1017868233	3300005764	Tropical Forest Soil	VLENGIVVGRIFKVQVAPENRPWMWASGHNGDLRRAAHGYEQTREAAMAAFAKSWRGSPSFGAIERA*
Ga0066903_1025205771	3300005764	Tropical Forest Soil	VLEGGIIVGRIFLSPAAPQDRPWMWASGHNGDLLRAAHGYEQTREEAMVAFKRSWHREV*
Ga0066903_1032366794	3300005764	Tropical Forest Soil	MLENGVVIGRIFFASAGGPEGRSWMWASGHNGDYDRAATGFEVTREDAMAARAKSWRRM*
Ga0066903_1032562603	3300005764	Tropical Forest Soil	DDYDVLENGVVVGRICKEEAAPPDRSWGWASGHNGDIKRAAHGYEPTREAAMAAFAKSWRRA*
Ga0066903_1033565951	3300005764	Tropical Forest Soil	YDVLEDGKVVGRIFHLEAAAPEGRPWMWASGHGGHIERAAHGYEATREAAMAAFAKS*
Ga0066903_1035702212	3300005764	Tropical Forest Soil	VLENGVVVGRIFFLNAVAPEGRPWIWASGDNAGGVARAAHGYEPTREAAMAAFAKSWRG
Ga0066903_1064275102	3300005764	Tropical Forest Soil	VVGRIFLVTVAPEGRPWMWASVHDGQIARAAHGYEPTREAVMMAFPKSWRRKLV*
Ga0066903_1071126631	3300005764	Tropical Forest Soil	DDYDVLADGKLVGRIFKVPIGPQDRTWMWANGRNRGIHHAVHGYEPTCEDAMAAFAKSWRG*
Ga0066903_1074292122	3300005764	Tropical Forest Soil	VLENSVVVGRIFTVPTAPEGRPWMWASGHGGHIERAAHGYEATREVG*
Ga0066903_1084429101	3300005764	Tropical Forest Soil	VRTEQPRKVGRIFNLDAVAPEGRPWMWASGHSAGTVHRAAHGYEPTREESMAAFAKSWRRE*
Ga0081455_109954822	3300005937	Tabebuia Heterophylla Rhizosphere	VLENGVVVGRIFLVPVAPQGRPWMWASGHNAGGVARAAHGYAATREAAMAAFAKSWRREISGCGDRQ
Ga0081455_110368191	3300005937	Tabebuia Heterophylla Rhizosphere	VLENGVVVGRIFFLDAVGPQGRSWMWASGHNGDIKRAAHGYEQTREAAMAAFAKSWRREVAIE*
Ga0081538_101586013	3300005981	Tabebuia Heterophylla Rhizosphere	VEAGVIVGRFFFLDAVGPQGRPWMWATGHNGDIKRAAHGYEATREAAMAAFAKSWRRG*
Ga0081540_10222255	3300005983	Tabebuia Heterophylla Rhizosphere	VLENGVVVGRIFFLDAVGPQGRTWMWASGHNGEIKRAAHGYAGTREAAMAAFAKSWRRQ*
Ga0075365_100168725	3300006038	Populus Endosphere	VLENGVVIGRIFCLDAVGPHGRPWMWASGHSAATVKRAAHGYEPTREAAIAAFARSWRRK
Ga0075365_100955733	3300006038	Populus Endosphere	MTIENGVVVGRILCLDAVGPHDRPWMWASGHNGDIKRAACGYEQTREAAMAAFAKSWRRRASDAR*
Ga0075365_100980303	3300006038	Populus Endosphere	VGRIFCLDVVGPQGRPWMWASGHSADSVKCAAYGYEATREAAMAAFARSWRRS*
Ga0075365_101967732	3300006038	Populus Endosphere	VVGRIKVPVAPQGRRWMWASGHSATTVKRAAHGYEPTREAAMAAFAKSWRRE*
Ga0075365_102649312	3300006038	Populus Endosphere	VLEDGVIVGRILNVPIAPQDQPWMWASGHSAASVKRAAHGYDATREAAMAAFAKSWRRET
Ga0075365_104529572	3300006038	Populus Endosphere	QWRDDDYDVLEDGVIVGRIFLSPGAPQDRQWMWASGHSAATVKRAAHGYEPTREAAMAAFVKSWRKG*
Ga0075365_106990572	3300006038	Populus Endosphere	VKVGRIFHLDAAAADGRPWMWASGHAAGTVARARHGYEATREAAMAAFAKRWRRE*
Ga0075365_109300161	3300006038	Populus Endosphere	LENGVVVGRIFLLGAVAPKGRPWMWASAHSAATVRRAAHGYEPTRDAAMAAFAKSWRCQAR*
Ga0075364_106108702	3300006051	Populus Endosphere	LVTTRKTSRARIVVGRIKVPVAPQGRRWMWASGHSATTVKRAAHGYEPTREAAMAAFAKSWRRE*
Ga0075432_105333161	3300006058	Populus Rhizosphere	LENGVVIGRIFKSSGAPQDRPRMWASGHNGELRRAAHGYEPTREAAMAAFGKSWRRV*
Ga0075362_102151852	3300006177	Populus Endosphere	DYAALENGVIVGRIFKVPIAPADRPWMWASGHNGDIKRAAHGYEPTCEAAMAAFAKSWRRET*
Ga0075428_1006667373	3300006844	Populus Rhizosphere	VGRIFHLDAAAADGRPWMWASGHAAGTVARARHGYEATREAAMAAFAKRWRRE*
Ga0075428_1014247652	3300006844	Populus Rhizosphere	GQWRDDDYDVLENGVVVGRIFKVPVAPQDRPWMWASGHNGDIKRAAHGYEPTREAAMAAFAKSWRC*
Ga0075428_1017215633	3300006844	Populus Rhizosphere	GRIFKVPIAPGDRPWMWASGHNGHIRRAPHGYAGTREDAMAAFAKNWRRE*
Ga0075421_1004443091	3300006845	Populus Rhizosphere	DDYDVVENGVIVGRIFLDAVGPRARPGMWASGHNADYRRAAHGYEQTREAAMAAFAKSWRRA*
Ga0075421_1006196602	3300006845	Populus Rhizosphere	MPSLMLKRASANVLENGVVVGRIFVTPAAPQHRQWMWASGHNGEIRRAAYGYEATREAAMAAFAKSWRRE*
Ga0075421_1013052322	3300006845	Populus Rhizosphere	VLENGVVVGRIFKVPVAPQDRPWMWASGHNGDIKRAAHGYEPTREAAMAAFAKSWRC*
Ga0075421_1013375041	3300006845	Populus Rhizosphere	QDDFDVVEDGVIVGRIFKVPIAPQDRHWMWASGHNGDIRRAAHGYEATREAAMAAFAKSWRQE*
Ga0075421_1014327691	3300006845	Populus Rhizosphere	WRDDDYDVLENGVMVGRISKEQIAPQDRPRSWASGHSAATVKRAAHGYEPTREAAMAASAKSWRRG*
Ga0075421_1016368802	3300006845	Populus Rhizosphere	VCIFFLDAVGPKDRPWMWASGHNGEIRRAAHGYEPTREAAMAAFAKSWRRET*
Ga0075430_1013949142	3300006846	Populus Rhizosphere	VVVGRIFTVPTAPEGCPWMWASGHSADSVKRAAHGYEATREAAMAAFAKSWRRS*
Ga0075420_1004962561	3300006853	Populus Rhizosphere	VVVGRIFVTPAAPQHRQWMWASGHNGEIRRAAYGYEATREAAMAAFAKSWRRE*
Ga0075429_1004593853	3300006880	Populus Rhizosphere	YDVVENGVIVGRIFLDAVGPRGCPWMWASGHNGDYRRAAHGYEPTREAAMAALAKSWRRE
Ga0111539_106742093	3300009094	Populus Rhizosphere	VLEDGVVVGRIFLSPGAPQERARMWASGHNGDIPCAALGDEPTREAAMAAFAKSRRRE*
Ga0111539_108412383	3300009094	Populus Rhizosphere	DVLEDGVVVGRICKEEAAPQGRQWGWASGHSAATVKRAAHGYEATREEAMAAFAKSWHGQR*
Ga0111539_133287871	3300009094	Populus Rhizosphere	EDYSVLENGVVVGRIFKAQVAPQDRPWMWASGHSAATVKRAAHGYEPTREAAMAAFAKSWRRE*
Ga0075418_103742921	3300009100	Populus Rhizosphere	DYDVLEDGVIVGRIFKVPIAPQDQPWMWASGHNGDYRRAAFGYEPTREDAMAAFAKSWRRAQ*
Ga0075418_107626862	3300009100	Populus Rhizosphere	FDVVEDGVIVGRIFKVPIAPQDRHWMWASGHNGDIRRAAHGYEATREAAMAALTKSWRQS
Ga0075418_117299511	3300009100	Populus Rhizosphere	DNQDDYDVLENGVVVGRIFTVPTAPEGCPWMWASGHSADSVKRAAHGYEATREAAMAAFAKSWRR*
Ga0075418_118489232	3300009100	Populus Rhizosphere	ANVLENGVVVGRIFVTPAAPQHRQWMWASGHNGEIRRAAYGYEATREAAMAAFAKSWRRE
Ga0066709_1001690124	3300009137	Grasslands Soil	MASWVGRIFLSPVAPEDRPWMWASGHNGDIRRAAYGYEPTREAAMAAFAKSWRRE*
Ga0114129_110885301	3300009147	Populus Rhizosphere	GVMVGRISKEQIAPQDRPRSWASGHSAATVKRAAHGYEPTREAAMAASAKSWRRG*
Ga0114129_130757021	3300009147	Populus Rhizosphere	VLEDGVIVGRIFMLPIAPRNRPWMWASGHNGHIRRAARGYEPTR
Ga0111538_122649471	3300009156	Populus Rhizosphere	VVVGRIFTVPIAPQGRPWMWASDHSADSVKRAAHGYEATREAAMAAFAKSWRR*
Ga0126380_102940102	3300010043	Tropical Forest Soil	LRDDDYDLEDDVIVGRIFLVPVAPEGRPWMWASGHNGDIKRAAHGYEPTREAAMAAFAKSWRRE*
Ga0126380_106365583	3300010043	Tropical Forest Soil	LENGVVVGRICKEQAAPQGRQWGWASGHNGDYRRAADGYEATREAAMAAFAKSWRRE*
Ga0126382_104131973	3300010047	Tropical Forest Soil	TGRIFHLDAAAPEGSPWMWASGHGRQMKRAAHGYEATREAAMAAFAKSWRRQ*
Ga0126382_110112032	3300010047	Tropical Forest Soil	VLENGKIVGRIFKVPIAPQDRHWMWASGHNGHIRRAAHGYEPMRESMAAFAKSWRRTLPL
Ga0126378_122392291	3300010361	Tropical Forest Soil	VEDGVIVGRIFLAPVAPEGRPWMWASSHNGDIKRAAHGYEPTREAAMAAFAKSWRRE*
Ga0126377_105471871	3300010362	Tropical Forest Soil	VSENGAVVGRIFFLDAVGPQGRPWMWASGHGGHIKRAAHGYEATREAAMAAFAKSWRGRLSQRE*
Ga0126377_111200682	3300010362	Tropical Forest Soil	MLENGVVVGRIFCLDAVGPQGRPWMWASGHNGDIKRAAYGYEATREAALAAFARE*
Ga0126377_113013742	3300010362	Tropical Forest Soil	VLEDGKIVGRIFLLDAAAADGRAWMWASGHGGHIERAAHGYEAAREAAMAAFAKSWRR*
Ga0126377_114601523	3300010362	Tropical Forest Soil	LLENGVVVGRIFLSPGAPQDRQWMWASGHSADSIKRAAHGYEATREAAMTAFAKSWRRE*
Ga0126377_119797831	3300010362	Tropical Forest Soil	FDVVENGIIVGRIFKVPIAPQDRPWMWTSGHNGHIRRAAHGYELTREAAMTAFSKSWRQES*
Ga0126377_121973451	3300010362	Tropical Forest Soil	VLENVVVIGRIFKVPVAPPDRPWMWASGHNGDIKRVAHGYEPTRDAAMAAFAKSWRQ*
Ga0126377_122537742	3300010362	Tropical Forest Soil	DNDYDVLEDGKVVGRIFHLEAAAPEGRPWMWASGHAPGTFARARHGYEPTREAAMAAFAKSWRRE*
Ga0126375_107769531	3300012948	Tropical Forest Soil	VEDGVIVGRIFLAPVAPEGRPWMWASSHNGDIKRAAHGYEPTREAAMAAF
Ga0132258_1011037412	3300015371	Arabidopsis Rhizosphere	VGRIFHLEAAAPEGRPWMWASGHGGHIERAAHGYEATREAAMAAFAKSWRRS*
Ga0132258_104715219	3300015371	Arabidopsis Rhizosphere	VVGRIFFLDAVGPQSRPSMWASGHNGDYRRAAHGYESTRGAAMAAFAKSWRRE*
Ga0132258_105630303	3300015371	Arabidopsis Rhizosphere	VLEKGILVGRIFFLDAVGPHGRPWMWASGHSAATIRRAAHGHEPTREAAMAAFAKSWRRG
Ga0132258_107545637	3300015371	Arabidopsis Rhizosphere	VLEDGAVVGRIFKVPVVPTDRLWMWASGHNGDIKRAAYGYEQTREAAMAAFAKSWRR*
Ga0132258_134261391	3300015371	Arabidopsis Rhizosphere	DYNVLENGTVVGRIFFLDAVGPHGRPWMWTIRDSKGCSPTHGYEPTREAAMAAFAKSWRR
Ga0132256_1011410962	3300015372	Arabidopsis Rhizosphere	DGIVVGRIFKVAPPDRPWMWASGHSAATVKRVAHGYERTREVAMAAFAKSWRRDSLSKK*
Ga0132257_1033929841	3300015373	Arabidopsis Rhizosphere	DDYDYDVLENGVVVGRIQGRAWMWASGHSADSVKRAAHGYEPTREAAMAAFAKSWRRE*
Ga0132255_1001445165	3300015374	Arabidopsis Rhizosphere	VLENRVVVGRSFTVPTAPQGRPWMWASGHSAATIKRAAHGYEPTREAAMAAFAKTWLTVWNL*
Ga0182039_101986045	3300016422	Soil	VLEAGVVVGRIFLVPTGPEGRPWMWASGHNGQISRAAHGYEPTREAAMSAFAKSWRGQR
Ga0184605_100178448	3300018027	Groundwater Sediment	VGRIFKVPIAPRDRHWMWASGHNGHIRRAAHGYEPTREAAMLAFAKSWHREM
Ga0209152_101334333	3300026325	Soil	MASWVGRIFLSPVAPEDRPWMWASGHNGDIRRAAYGYEPTREAAMAAFAKSWRRE
Ga0209382_102184401	3300027909	Populus Rhizosphere	VLENGIVVGRIFFLDAVGPRGRPWMWASGHNGDIKRAAHGYEPAREAAMAAFTRSWRKS
Ga0209382_105334433	3300027909	Populus Rhizosphere	MPSLMLKRASANVLENGVVVGRIFVTPAAPQHRQWMWASGHNGEIRRAAYGYEATREAAMAAFAKSWRRE
Ga0209382_115508932	3300027909	Populus Rhizosphere	VLEHGVIVGRIFTVPTAPQGRPWMWASGHNGDYRRAAHGYEPTREAATAAFAKSWRRE
Ga0209382_115623632	3300027909	Populus Rhizosphere	EWRDDDYDVLENGVVVGRIFKVPVAPQDRPWMWASGHNGDIKRAAHGYEPTREAAMAAFAKSWRC
Ga0318538_100976661	3300031546	Soil	AALQHVVIVRFQPIAPQDRPWMWASGHNGHTRRAVHGYEPTRETAMAAFAKSWRRE
Ga0307469_108779351	3300031720	Hardwood Forest Soil	IFFLDAVGQQGRPWMWASGHNGDIKRAAHGYEPTREAAMAAFRSWCR
Ga0318577_106051893	3300032091	Soil	VVGRIFLVPTAPEGRPWMWASGHNGQISRAAHGYEPTREAAMSAFAKSWRGQR
Ga0307471_1001797702	3300032180	Hardwood Forest Soil	VLENGVVVGRISKVQVAPPEHPWMWASGHNGDINRAAHGYEPTRETALAAFAKSWCRQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F094128

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences