Metagenome / Metatranscriptome Family F094189

Basic Information
Family ID	F094189
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	42 residues
Representative Sequence	TVPAEIDLKGKHARVADGQKCPRCGSSLEVAVVVHIPEAA
Number of Associated Samples	91
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	33.33 %
% of genes near scaffold ends (potentially truncated)	0.94 %
% of genes from short scaffolds (< 2000 bps)	0.94 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Most Common Taxonomy
Group	Unclassified (97.170 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.981 % of family members)
Environment Ontology (ENVO)	Unclassified (21.698 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.170 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 5.88% Coil/Unstructured: 94.12%
Feature Viewer

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Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00005	ABC_tran	7.55
PF11950	DUF3467	5.66
PF02423	OCD_Mu_crystall	5.66
PF12848	ABC_tran_Xtn	2.83
PF13545	HTH_Crp_2	0.94
PF13180	PDZ_2	0.94
PF03544	TonB_C	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG2423	Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family	Amino acid transport and metabolism [E]	5.66
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.94

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.17 %
All Organisms	root	All Organisms	2.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.17 %
cellular organisms	root	All Organisms → cellular organisms	2.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.17 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.17 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.17 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.17 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.17 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.17 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.94 %

Scaffold	Taxonomy	Length	IMG/M Link
3300011120\|Ga0150983_10835262	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	561	Open in IMG/M
3300014199\|Ga0181535_10060690	All Organisms → cellular organisms → Bacteria → Acidobacteria	2556	Open in IMG/M
3300014492\|Ga0182013_10073713	All Organisms → cellular organisms → Bacteria → Acidobacteria	2429	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.96%
Host-Associated	Host-Associated	16.04%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.75%
Plants	Host-Associated → Plants	16.04%
Aquatic	Environmental → Aquatic	13.21%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.26%
Freshwater	Environmental → Aquatic → Freshwater	13.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.38%
Peat	Environmental → Terrestrial → Peat	6.60%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.66%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.94%
Cave	Environmental → Terrestrial → Cave	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.28%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.21%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.38%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.60%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.66%
Loam	Environmental → Terrestrial → Soil → Loam	3.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.77%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.94%
Lake	Environmental → Aquatic → Freshwater → Lake	0.94%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.94%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.70%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.15%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.49%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.55%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.60%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.66%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.77%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.94%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.55%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.72%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.72%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.77%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.83%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	2.83%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.83%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.89%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	1.89%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.89%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.89%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.89%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.94%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	0.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.94%
Wetland	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland	0.94%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.94%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.94%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.94%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.94%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005650	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_055 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006949	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16B	Environmental	Open in IMG/M
3300009175	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009587	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_9_15_C (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010866	Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011340	Combined Assembly of Wetland Metatranscriptomes	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012398	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014151	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300018004	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300019187	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019189	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019256	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019270	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019275	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019278	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300022511	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022711	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022720	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023101	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14	Environmental	Open in IMG/M
3300025548	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025650	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)	Environmental	Open in IMG/M
3300025829	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16B (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300030937	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031590	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031866	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSU5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033826	Peat soil microbial communities from Stordalen Mire, Sweden - 714 E2 1-5	Environmental	Open in IMG/M
3300034065	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 1-5	Environmental	Open in IMG/M
3300034653	Metatranscriptome of peat soil microbial communities from wetland fen in Alaska, United States - Frozen_pond_03R_16 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1058037042	3300000364	Soil	MCTHTVPAQIDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA*
JGI1027J12803_1056588931	3300000955	Soil	VPAEIDLKGKVPRVAKGQKCPRCGSSLEVAVVVQVPEAA*
JGI26339J46600_100649971	3300003218	Bog Forest Soil	ICTRTVPADIDLRGKYARVEQGQRCPRCGSSLDVAAVVQIPEAA*
Ga0070674_1005429871	3300005356	Miscanthus Rhizosphere	MAHCPMCTHTVPTEVDLRGKYARVAAGQKCSRCGSSLEVAVVIHV
Ga0070673_1002949561	3300005364	Switchgrass Rhizosphere	THTVPAEVDLKGKYARVAAGQKCPRCGSSLEVAVVIHVPEAA*
Ga0070665_1010141381	3300005548	Switchgrass Rhizosphere	PICTHTVPADIDIKGKIPRVTKGSKCPRCGSSLEVAVVVQVPEAA*
Ga0066700_109633523	3300005559	Soil	HTVPADIDLKGKFPRVAAGQKCSRCGSSLDVAAVIQIPEAA*
Ga0068857_1014908273	3300005577	Corn Rhizosphere	PMCTHTVPAQIDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA*
Ga0068859_1021590681	3300005617	Switchgrass Rhizosphere	AEIDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA*
Ga0068864_1015391761	3300005618	Switchgrass Rhizosphere	VPADIDIKGKIPRVARGAICPRCGSSLEVAVVVQVPEAA*
Ga0075038_111709231	3300005650	Permafrost Soil	TVPADIDLKGKRPRVAAGQKCVRCGSSLDVAAVIQIPEAA*
Ga0075038_114344432	3300005650	Permafrost Soil	MCTHTVAAEIDLKGKRARVAAGQKCSRCGSSLEVAVVIQIPEAA*
Ga0070717_100719575	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	IDLKGKFPRVEPGQKCARCGSSLDVAIVIQIPEAA*
Ga0070712_1018610933	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	PAEIDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA*
Ga0068865_1007279773	3300006881	Miscanthus Rhizosphere	VDLRGKYARVAAGQKCPRCGSSLEVAVVIHVPEAA*
Ga0075528_102028851	3300006949	Arctic Peat Soil	THTVQAQIDLKGKYARVAAGQKCARCGSSLEVAVVIQIPEAA*
Ga0073936_103312691	3300009175	Freshwater Lake Hypolimnion	THTVPAEVDVKGKKPHVIKGSKCPRCGSSLEVAVVVQVPEAA*
Ga0105242_124549783	3300009176	Miscanthus Rhizosphere	VPADIDIKGKIPRVARGAKCPRCGSSLEVAVVVQVPEAA*
Ga0116214_14016112	3300009520	Peatlands Soil	DIDLRGKYPRVTAGQKCPRCRSSLDVAVVVQIPEAA*
Ga0115602_12323281	3300009587	Wetland	CPICTHTVPAEVDLRGKRPRVAPGQRCPRCASSLDVAVIVQLPEAA*
Ga0116121_11507621	3300009644	Peatland	HCPICTHTVPADIDLRGKYPRVTSGQKCPRCGSALDVAAVVQIPEAA*
Ga0126372_111076863	3300010360	Tropical Forest Soil	ICTHTVPAEIDLKGKVPRVAKGQKCPRCGSSLEVAVVVQVPEAA*
Ga0136449_1010750451	3300010379	Peatlands Soil	DLKGRYARVASGQRCPRCSSSLDVAVVVQIPEAA*
Ga0126344_10938921	3300010866	Boreal Forest Soil	EVDIKGRIKIARVSPGQRCPRCGASLDVAVVVEIPQAA*
Ga0150983_108352622	3300011120	Forest Soil	AHCPICTHTVPAEIDLKGKYPRVASGQKCQRCGSSLEVAVVVQIPEAA*
Ga0150983_112919901	3300011120	Forest Soil	ICTHNVPADIDLKGKFARVTPGQRCPRCKSSLDVAVVIQIPEAA*
Ga0126317_103012701	3300011332	Soil	HCPMCTHTVPAEVDLRGKYARVAAGQKCPRCGSSLEVAVVIHVPEAA*
Ga0151652_135357862	3300011340	Wetland	MCTHTVPADVDLRGKYARVAAGQKCPRCGSSLEVAVVIHVPEAA*
Ga0137379_112884871	3300012209	Vadose Zone Soil	TVPAEIDFAGKKVRVAAGQKCPRCGSSLEVAVVVQIPEAA*
Ga0134051_12645731	3300012398	Grasslands Soil	PICTHTVPAEIDLKRKYPKVEPGQRCPRCSSSLDVAVVIQIPEAA*
Ga0150984_1084335201	3300012469	Avena Fatua Rhizosphere	DIDLRGKYPRVEAGQKCPRCGSALDVAAVIQIPEAA*
Ga0150984_1110813403	3300012469	Avena Fatua Rhizosphere	HTVPADLDLKRKFPRVEPGQRCPRCSSSLDVAVVIQIPEAA*
Ga0157369_105868071	3300013105	Corn Rhizosphere	DLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA*
Ga0163162_102660843	3300013306	Switchgrass Rhizosphere	MCTHTVPAEVDLKGKYARVAAGQKCPRCGSSLEVAVVIHVPEAA*
Ga0181539_12988412	3300014151	Bog	MCTHTVPAEIEVKGKLARTAPGQTCARCGSSLDVAVVVQIPEAA*
Ga0181535_100606903	3300014199	Bog	MCTHTVPADVDVKGKAVRTAPGQDCPRCGSSLDVAVVVQFQEAA*
Ga0181535_102884161	3300014199	Bog	HCPICTHTVPAEIDLRGKYPRVMSGQKCPRCGSALDVAAVVQIPEAA*
Ga0182013_100737132	3300014492	Bog	MCTHTVPAEIDVKAKYVRTAPGQNCPRCGSSLDVAVVVQIPEAT*
Ga0182013_102998501	3300014492	Bog	DIDLRGKYPRVTSGQKCPRCRSALDVAAVVQIPEAA*
Ga0182019_105196751	3300014498	Fen	PICTHTVPAEIDLKGRYARVAPGQRCPRCSSSLDVAVVVQIPEAA*
Ga0182030_104687503	3300014838	Bog	MCTHTVPADVDVKGKFVRTAPGQTCPRCGSSLDVAVVVQIPEAA*
Ga0157376_120489001	3300014969	Miscanthus Rhizosphere	ADIDLTGSRPRVTKGSKCPRCGSSLEVAVVVQVPEAA*
Ga0157376_124858601	3300014969	Miscanthus Rhizosphere	HTVPADLDLKRKYPRVEPGQRCPRCSSSLDVAVVIQIPEAA*
Ga0132256_1016957911	3300015372	Arabidopsis Rhizosphere	MCTHTVPAEIDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPE
Ga0187854_103165323	3300017938	Peatland	KGRYARVAPGQRCPRCSSSLDVAVVVQIPEAAQPGTYQH
Ga0187865_12320581	3300018004	Peatland	IDLKGRYARVAPGQRCPRCSSSLDVAVVVQIPEAA
Ga0187871_106666383	3300018042	Peatland	ADIDLRGKYPRVTSGQKCPRCGSALDVAAVVQIPEAA
Ga0184584_1439601	3300019187	Soil	ALCPICTHTVPAEVDLKGKLKFARVSPGQRCPRCGASLDVAVVIEVPQAA
Ga0184585_1002631	3300019189	Soil	EVDLKGKARIARVSPGQRCPRCGASLDVAVVVEIPQAA
Ga0181508_14203491	3300019256	Peatland	TVPAEIDLRGKYPRVLTGQKCPRCGSALDVAAVVQIPEAA
Ga0181512_15918512	3300019270	Peatland	CPICTHTVPAEVELKGKFKVARVSPGQRCTRCGSSLDVAVVVEIPQAA
Ga0187798_18438281	3300019275	Peatland	PAEIDLRGKYPKVSTGQTYPRCHSPLYVAAVIQIQEAA
Ga0187800_10222403	3300019278	Peatland	THTVPADIDLRGKYPRVSTGQKCPRCGSALDVAAVVQIPEAA
Ga0206353_113938732	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MCTHTVPAQIDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA
Ga0210407_105739143	3300020579	Soil	ICTHTVPADIDLKGKNPRVATGQRCTRCGASLDVAVIVQVPEAA
Ga0210401_108303481	3300020583	Soil	PLCTHNVPADIDLRGKYARVEQGQRCPRCNSSLDVAVVIQIPEAA
Ga0187846_100096294	3300021476	Biofilm	MGQVHCPICTHTVPAEIDLRGKRPLVVAGQKCMRCGSSLDVAVVVQIPEAA
Ga0242651_10379872	3300022511	Soil	VTASVDWKNKMKAARVTAGQRCPRCGSSLDVAVVVQLPQAA
Ga0242669_11216992	3300022528	Soil	HCPICTHTVPAEIDLRGKYPRVTSGQKCPRCGSPLDVAAVVQIPEAA
Ga0242658_10661813	3300022530	Soil	CTHNVEAEIDLKGKYPRVVPGQRCARCRSSLDVAVVFQYSQAA
Ga0242660_11355623	3300022531	Soil	CPICTHTVPAEIDFKGKFPRVARGQKCARCGSSLEVAVVVQVPEAA
Ga0242660_11565761	3300022531	Soil	THNVPADIELKGKFARVAPGQRCPRCKSSLDVAVVIQIPQAA
Ga0242660_12337603	3300022531	Soil	HTVPAEIDLKVKHARVAAGQKCPRCGSSLEVAVVIHILEAA
Ga0242655_101170031	3300022532	Soil	PICTHTVTAEIDLRGKYPRVASGQKCPRCGSALDVAAVIQIPEAA
Ga0242655_101858451	3300022532	Soil	HCPICTHNVLADIELKGKYPRVAAGQKCPRCGSSLDVAVVVQFSEAA
Ga0242674_10474142	3300022711	Soil	LCPICTHTVPAEVDLKGKLKFARVSPGQRCPRCGASLDVAVVIEVPQAA
Ga0242672_11162441	3300022720	Soil	PICTHTVAAEIDLRGKFPRVMNGQKCPRCGSALDVAAVVQIPEAA
Ga0242672_11475341	3300022720	Soil	ELDLRGKFPRVAEGQKCSRCGSSLDVAAVVQIPEAA
Ga0242654_103728491	3300022726	Soil	ADIELKGKYPRVAAGQKCPRCGSSLDVAVVVQFSEAA
Ga0224557_12905843	3300023101	Soil	IYLKGRRARVAPGQRCPRCSSSLDVAVVVQIPEAA
Ga0208716_10357483	3300025548	Arctic Peat Soil	PMCTHTVPAEIDLKGKYARTAPGQTCPRCRSSLDVAAVVQIPEAA
Ga0209385_12145791	3300025650	Arctic Peat Soil	MCTHTVPADLDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA
Ga0209484_101679833	3300025829	Arctic Peat Soil	THTVQAQIDLKGKYARVAAGQKCARCGSSLEVAVVIQIPEAA
Ga0207651_102033293	3300025960	Switchgrass Rhizosphere	THTVPAEVDLKGKYARVAAGQKCPRCGSSLEVAVVIHVPEAA
Ga0207703_122676732	3300026035	Switchgrass Rhizosphere	VDLRGKYARVAAGQKCPHCGSSLEVAVVILVPEAA
Ga0209689_13462073	3300027748	Soil	HTVPADIDLKGKFPRVAAGQKCSRCGSSLDVAAVIQIPEAA
Ga0311355_118712361	3300030580	Palsa	AEVDLKGKLKFARVSPGQRCPRCGASLDVAVVIEVPQAA
Ga0311354_102109231	3300030618	Palsa	PICTHTVPAEVDLKGKLKFARVSPGQRCPRCGASLDVAVVIEVPQAA
Ga0265461_113353301	3300030743	Soil	VPAEVDLKGKLKFARVSPGQRCPRCGAPLDVAVVIEIPQAA
Ga0138302_16659131	3300030937	Soil	HTVPAEIDLRGKYARVAAGQKCPRCHSALDVAAVVQIPEAA
Ga0308189_103069613	3300031058	Soil	AEVNLKGKTARVAPGQKCPRCTASLDVAVVVEVPEAA
Ga0170823_139435312	3300031128	Forest Soil	VTASVDWKNKMKAARVTQGQRCPRCGSSLDVAVVVQLPQAA
Ga0308194_103857672	3300031421	Soil	ICTHTVPADVELKGKVARVATGTKCPRCGSSLEVAVVV
Ga0170820_134314181	3300031446	Forest Soil	PICTHNVLADIELKGKYPRVAAGQKCPRCGSSLDVAVVVQYSEAA
Ga0170818_1032979173	3300031474	Forest Soil	AQIDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA
Ga0318541_106373333	3300031545	Soil	VPADIDLRGKFARVAPGQRCPRCLSSLDVAVVVQIPEAA
Ga0307483_10120351	3300031590	Hardwood Forest Soil	TVPAEIDLKGKHARVADGQKCPRCGSSLEVAVVVHIPEAA
Ga0310686_1074423151	3300031708	Soil	VPAEVDLKGKLKFARVSPGQRCTRCGASLDVAVVIEVPQAA
Ga0310686_1161288111	3300031708	Soil	LCPICTHTVPAEVDLKGKARIARVSPGQRCPRCGASLDVAVVVEIPQAA
Ga0310686_1166620922	3300031708	Soil	PAEIDLKGKLKFARVSPGQRCSRCGASLDVAVVIEIPQAA
Ga0316049_1061703	3300031866	Soil	ALCPICTHTVPAEVDLKGKLKFARVSPGQRCTRCGASLDVAVVIEVPQAA
Ga0308174_102199631	3300031939	Soil	HCPMCTHTVPAEVDLRGKYARVAAGQKCPRCGSSLEVAVVIHVPEAA
Ga0308174_105304811	3300031939	Soil	TVPADIDLKRKYPRVEPGQRCPRCSSSLDVAVVIQIPEAA
Ga0306920_1024523641	3300032261	Soil	CTHTVPAEIDFNGKKVRVAAGQKCPRCGSSLEVAVVVQIPEAA
Ga0348332_134748812	3300032515	Plant Litter	EVDLKGKQKIARVSVGQRCPRCGSSLDVAVVVEIPQAA
Ga0335079_122611892	3300032783	Soil	PAEIDLRGRRAKVAAGQRCPRCLSSLDVAVVVQIPEAA
Ga0335078_113764683	3300032805	Soil	TVPAEIDLRGKYPRVMSGQKCPRCGSALDVAAVVQIPEAA
Ga0335078_127381351	3300032805	Soil	ICTHTVPAEIDLRGKFPRVMRGQKCPRCGSALDVAAVVQIPEAA
Ga0335081_121586881	3300032892	Soil	ICTHTVPADVDYKGKGKYPRVVPGQKCPRCGSSLDVAVVVQIPEAA
Ga0335072_105517811	3300032898	Soil	THTVPAEIDLRGKSPRVASGQKCPRCGSALDVAAVVQIPEAA
Ga0310914_102819841	3300033289	Soil	VPAEIDFNGKKVRVAAGQKCPRCGSSLEVAVVVQIPEAA
Ga0326728_106220531	3300033402	Peat Soil	GHVHCPMCTHTVPAEIEVKGKLARTAPGQTCARCGSSLDVAVVVQIPEAA
Ga0326728_109622423	3300033402	Peat Soil	ADIDLKGRYARVAPGQRCPRCSSSLDVAVVVQIPEAA
Ga0334847_036790_98_217	3300033826	Soil	VQAEIDLKGKYARVAAGQKCARCGSSLEVAVIIQIPEAA
Ga0334827_153203_2_109	3300034065	Soil	IDLRGKYPRVTSGQKCPRCGSALDVAAVVQIPEAA
Ga0316599_141999_488_634	3300034653	Untreated Peat Soil	AHCPMCTHTVPAEIDLRGKHARVASGQKCPRCGSSLEVAVVIHIPEAA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094189

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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