Metagenome / Metatranscriptome Family F094190

Basic Information
Family ID	F094190
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	54 residues
Representative Sequence	LTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRPRRQ
Number of Associated Samples	86
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	1.89 %
% of genes from short scaffolds (< 2000 bps)	0.94 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (99.057 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (24.528 % of family members)
Environment Ontology (ENVO)	Unclassified (42.453 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (66.038 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.00% β-sheet: 0.00% Coil/Unstructured: 88.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00528	BPD_transp_1	20.75
PF00857	Isochorismatase	5.66
PF12071	DUF3551	4.72
PF03401	TctC	3.77
PF00005	ABC_tran	1.89
PF13531	SBP_bac_11	0.94
PF03976	PPK2	0.94
PF00596	Aldolase_II	0.94
PF13586	DDE_Tnp_1_2	0.94
PF13539	Peptidase_M15_4	0.94
PF13428	TPR_14	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	5.66
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	5.66
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	3.77
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.94

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.06 %
All Organisms	root	All Organisms	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.06 %
cellular organisms	root	All Organisms → cellular organisms	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.06 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.06 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Scaffold	Taxonomy	Length	IMG/M Link
3300005718\|Ga0068866_11092879	Not Available	571	Open in IMG/M
3300017792\|Ga0163161_10054954	All Organisms → cellular organisms → Bacteria → Proteobacteria	2890	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	52.83%
Host-Associated	Host-Associated	47.17%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.83%
Plants	Host-Associated → Plants	47.17%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	52.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	23.58%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.92%
Roots	Host-Associated → Plants → Roots	5.66%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.91%
Loam	Environmental → Terrestrial → Soil → Loam	17.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	17.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.32%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.77%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	3.77%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.89%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.30%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	17.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.60%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.77%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	3.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	24.53%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	8.49%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.55%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	3.77%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.89%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.89%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J18823_101791221	3300001686	Soil	ATPGTGGSCVQNPWYARYGEHGRGQDGDDRRRPKRK*
C688J35102_1188869182	3300002568	Soil	CAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRPRRQ*
Ga0063455_1014845001	3300004153	Soil	SFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRPRRP*
Ga0070683_1012337931	3300005329	Corn Rhizosphere	LTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRPRRQ*
Ga0070683_1016192351	3300005329	Corn Rhizosphere	TCAFTSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRGGDNRRHSKRP*
Ga0068869_1004156923	3300005334	Miscanthus Rhizosphere	SSFEQCMMTGGPGTGGSCVQNPWYLWYGEYGQGRVADDRRRPRRQ*
Ga0070682_1011331662	3300005337	Corn Rhizosphere	GNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRPRRQ*
Ga0070682_1018126981	3300005337	Corn Rhizosphere	GGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRVRRQ*
Ga0068868_1000877304	3300005338	Miscanthus Rhizosphere	AAVTYRPWCVQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEYGQGRVADDRRRPRRQ*
Ga0070660_1007081272	3300005339	Corn Rhizosphere	CIFTSFEQCMMTATPGTGGSCVQNPWYARYGEHGRGQDGGDRRRSKRQ*
Ga0070691_100294121	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	YTCIFTSFEQCMMTATPGTGGSCVQNPWYARYGEPGRGQDGDDRRRPKRK*
Ga0070668_1008039281	3300005347	Switchgrass Rhizosphere	LTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEYGQGRVADDRRRPRRQ*
Ga0070674_1007009171	3300005356	Miscanthus Rhizosphere	TYRPWCVQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEYGQGRVADDRRRPRRQ*
Ga0070659_1020280882	3300005366	Corn Rhizosphere	CMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRPRRQ*
Ga0070713_1013420152	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	TCAFTSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRGGDSRRHSKRP*
Ga0070700_1001344881	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	NGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRPKRQ*
Ga0070700_1001428603	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	QCMMTATPGTGGSCVQNPWYARYGEPGRGQDGDDRRRPKRK*
Ga0070678_1017862052	3300005456	Miscanthus Rhizosphere	GRDGAYTCIFTSFEQCMMTATPGTGGSCVQNPWYARYGEHGRGQEGGDRRRSRRQ*
Ga0070685_100382541	3300005466	Switchgrass Rhizosphere	TSFEQCMMTATPGTGGSCVQNPWYARYGEHGRGQDGDDRRRPKWK*
Ga0070693_1007469072	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	FTSFEQCMMTATPGTGGSCVQNPWYARYGEHGRGQDGDDRRRPKWK*
Ga0068854_1020927621	3300005578	Corn Rhizosphere	VTYRPWCVQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVAEDRRRPRRQ*
Ga0068864_1014985181	3300005618	Switchgrass Rhizosphere	VQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVAEDRRRPRRQ*
Ga0068866_110928792	3300005718	Miscanthus Rhizosphere	TGRGGRSCSFTSFEQCMMTGGPGTGGSCELNPWYLWYGEHGQGRGGDDRRRPRR*
Ga0068861_1013222622	3300005719	Switchgrass Rhizosphere	GSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVAEDRRRPRRQ*
Ga0066903_1044196882	3300005764	Tropical Forest Soil	CMMTATPGTGGQCVQNPWYLRYGERQGGDVRLRPKRQ*
Ga0068870_105441331	3300005840	Miscanthus Rhizosphere	VQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRGGDNRRHSKRP*
Ga0075363_1005682332	3300006048	Populus Endosphere	FSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRVRRQ*
Ga0070712_1018049822	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	CVVYSGRDGAYTCIFTSFEQCMMTATPGTGGSCVQNPWYARYGEHGRGQDGGDRRRPKRQ
Ga0075367_110385071	3300006178	Populus Endosphere	YRPWCVQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVAEDRRRPRRQ*
Ga0075430_1016517371	3300006846	Populus Rhizosphere	VQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCQLNPWYLWYGEHGQGRGGDDRRRPGRR*
Ga0105243_131128552	3300009148	Miscanthus Rhizosphere	PWCVQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEYGQGRVADDRRRPRRQ*
Ga0105242_105648501	3300009176	Miscanthus Rhizosphere	CAFSSFEQCMMTGGPGTGGSCVQNPWFLWYGEHGQGRVADDRRRPRRP*
Ga0105249_123787652	3300009553	Switchgrass Rhizosphere	GSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRSRRQ*
Ga0126313_107048822	3300009840	Serpentine Soil	YEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRPRRP*
Ga0126308_101473743	3300010040	Serpentine Soil	VYSGRDGAYTCIFTSFYLCMMPATPGTGGSCVQNPWYARYGEHGRGQDGGDRRRPKRQ*
Ga0105239_106538533	3300010375	Corn Rhizosphere	WCVQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEYGQGRVADDRRRPRRQ*
Ga0105239_126455881	3300010375	Corn Rhizosphere	SGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVAEDRRRPRRQ*
Ga0134124_118633592	3300010397	Terrestrial Soil	AYTCIFTSFDQCMMTATPGTGGSCVQNPWYARYGEQGRGQEAGDRRRPRRQ*
Ga0134122_109272761	3300010400	Terrestrial Soil	AFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEYGQGRVADDRRRPRRQ*
Ga0150985_1023810371	3300012212	Avena Fatua Rhizosphere	AVTYRPWCVQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVAEDRRRPRRQ*
Ga0150985_1192971161	3300012212	Avena Fatua Rhizosphere	TCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRSRRQ*
Ga0150985_1227922691	3300012212	Avena Fatua Rhizosphere	AVTYRPWCVQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRPRRQ*
Ga0157310_101822031	3300012916	Soil	GRDGAYTCIFTSFEQCMMTATPGTGGSCVQNPWYARYGEHGRGQDGGDRRRSERQ*
Ga0164298_104010862	3300012955	Soil	MTGGPGTGGSCVQNPWYLWYGEYGQGRVADDRRRPRRQ*
Ga0164303_100680541	3300012957	Soil	CIFTSFEQCMMTATPGTGGSCVQNPWYARYGEHGRGQDGGDRRRSERQ*
Ga0164299_105349742	3300012958	Soil	SFEKGMMTGGPGTGGSCVQNPWYLWYGEHGQGRVAEDRRRPRRQ*
Ga0164301_108109761	3300012960	Soil	DRCAPRCRRHLPPWCVQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRPRRQ*
Ga0164301_116127541	3300012960	Soil	MTAAPGTGGSGVQSPWYARYGEQGRGQDGGDRRRPKRQ*
Ga0164302_103135753	3300012961	Soil	ETYRPWCVQYSGSNGDNGLTCAFTSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRGGDSRRHSKRP*
Ga0164308_100575465	3300012985	Soil	FEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADERRRPRRQ*
Ga0164306_114790581	3300012988	Soil	SGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRPKRP*
Ga0164305_108862352	3300012989	Soil	CVVYSGRDGAYTCIFTSFEQCTMTATPGTGGSCVQNPWYARYGEQGRGQDGGDRRRPKRQ
Ga0164305_115801041	3300012989	Soil	SSFEQCMMTGGPGTGGSCVQNPWFLWYGEHGQGRVAEDRRRPRRQ*
Ga0157374_100221521	3300013296	Miscanthus Rhizosphere	SGGSGNNGLTCAFSSSEQCMMTGGPGTGGSCVQNPWYLWYGEYGQGRVADDRRRPRRQ*
Ga0163162_100324391	3300013306	Switchgrass Rhizosphere	TGGPGTGGSCVQNPWYLWYGEHGQGRVAEDRRRPRRQ*
Ga0163162_129140823	3300013306	Switchgrass Rhizosphere	EQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADERRRPRRQ*
Ga0163163_126684452	3300014325	Switchgrass Rhizosphere	MMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRPRRQ*
Ga0163163_127606322	3300014325	Switchgrass Rhizosphere	VTYRPWCVQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRVRRQ*
Ga0163163_132348261	3300014325	Switchgrass Rhizosphere	TCIFTSFEQCMMTATPGTGGSCVQNPWYARYGEHGRGQDGDDRRRPKWK*
Ga0163163_132482201	3300014325	Switchgrass Rhizosphere	TCIFTSFEQCMMTATPGTGGSCVQNPWYARYGEHGRGQDGGDRRRSERQ*
Ga0157380_101286444	3300014326	Switchgrass Rhizosphere	NNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRPRRP*
Ga0157379_100531231	3300014968	Switchgrass Rhizosphere	RDGAYTCIFTSFEQCMMTATPGTGGSCVQNPWYARYGEHGRGQDGDDRRRPKWK*
Ga0157379_114436251	3300014968	Switchgrass Rhizosphere	PWCVQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRPKRQ*
Ga0132256_1038437031	3300015372	Arabidopsis Rhizosphere	RPWCVQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVAEDRRRPRRQ*
Ga0132257_1031543912	3300015373	Arabidopsis Rhizosphere	FEQCMMTATPGTGGSCVQNPWYARYGEHGRGQDGDDRRRPKWK*
Ga0163161_100549541	3300017792	Switchgrass Rhizosphere	TCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVAEDRRRPRRQ
Ga0190266_101865282	3300017965	Soil	RDGAYTCIFTSFDQCMMTATPGTGGSCVQNPWYARYGEQGRGQEAGDRRRPKRQ
Ga0190270_102386312	3300018469	Soil	CVQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWFLWYGEHGQGRVADDRRRPRRP
Ga0190270_122363641	3300018469	Soil	TYRPWCVQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGEGRVADDRRRPRRQ
Ga0190274_126775131	3300018476	Soil	YTCMFTSFEQCMMTATPGTGGSCVQNPWYARYGEPGRGQDGDDRRRPKRK
Ga0190274_131624533	3300018476	Soil	CMMTGGPGTGGSCVQNPWYLWYGEHGEGRVADDRRRPRRQ
Ga0173481_105062921	3300019356	Soil	AVTYRPWCVQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEYGQGRVADDRRRPRRQ
Ga0190267_100665193	3300019767	Soil	GAYTCIFTTFDQCMMTATPGTGGSCVQNPWYARYGEQGRGQEVGERRRPKRQ
Ga0207642_100909483	3300025899	Miscanthus Rhizosphere	RPWCVQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRPKRQ
Ga0207693_102063943	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	NGLTCAFTSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRGGDSRRHSKRP
Ga0207690_112157752	3300025932	Corn Rhizosphere	RPWCVQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRPRRQ
Ga0207711_107146971	3300025941	Switchgrass Rhizosphere	WCVQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEYGQGRVADDRRRPRRQ
Ga0207711_112787111	3300025941	Switchgrass Rhizosphere	RPWCVQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVAEDRRRPRRQ
Ga0207661_116978021	3300025944	Corn Rhizosphere	MTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRPKRQ
Ga0207651_115835102	3300025960	Switchgrass Rhizosphere	WCVQYGGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRVRRQ
Ga0207703_104888671	3300026035	Switchgrass Rhizosphere	GNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRPRRQ
Ga0207703_106475801	3300026035	Switchgrass Rhizosphere	SGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEYGQGRVADDRRRPRRQ
Ga0207708_100827674	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	NNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEYGQGRVADDRRRPRRQ
Ga0207676_109619751	3300026095	Switchgrass Rhizosphere	TCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRPRRQ
Ga0207674_102067041	3300026116	Corn Rhizosphere	NGDNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADERRRPRRQ
Ga0207675_1000900075	3300026118	Switchgrass Rhizosphere	GSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEYGQGRVADDRRRPRRQ
Ga0207675_1006166751	3300026118	Switchgrass Rhizosphere	NNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVAEDRRRPRRQ
Ga0207675_1016513951	3300026118	Switchgrass Rhizosphere	NNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRPRRQ
Ga0207683_114127151	3300026121	Miscanthus Rhizosphere	CMMTGGPGTGGSCVQNPWYLWYGEHGQGRVAEDRRRPRRQ
Ga0208989_101891902	3300027738	Forest Soil	MTGGPGTGGACVQNPWYLWYGEHGRGGDERRRPRRQ
Ga0268264_104317232	3300028381	Switchgrass Rhizosphere	VQYGGSNGDNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADERRRPRR
Ga0247819_100394464	3300028608	Soil	YSGRDGAYTCIFTSFEQCMMTATPGTGGSCVQNPWYARYGEHGRGQDGDDRRRPKRK
Ga0307299_102797152	3300028793	Soil	WCVQYGGSSGDNGLTCTFTSYEQCMMTGGPGTGGQCVQNPWYLWYGEHGQGRGGDNRRQPKRQ
Ga0307292_103676942	3300028811	Soil	YSGRDGAYTCIFTSFDQCMMTATPGTGGSCVQNPWYARYGRGQDGGDRRRPKRQ
Ga0307286_102794562	3300028876	Soil	GSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRPKRP
Ga0307300_102424451	3300028880	Soil	SFEQCMMTATPGTGGSCVQNPWYARYGEHGQGQDGDDRRRPKWK
Ga0308197_102780961	3300031093	Soil	TCIFTSFDQCMMTATPGTGGSCVQNPWYARYGEQGRGQEVGERRRPKRQ
Ga0307499_100722851	3300031184	Soil	WCVQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWFLWYGEHGQGRVADDRRRPRRP
Ga0307497_101048811	3300031226	Soil	NGLTCAFTSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGRGGGDDRRRPRQR
Ga0307505_106374201	3300031455	Soil	YRPWCVQYSGGSGNNGLTCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADDRRRPRRQ
Ga0318516_100414015	3300031543	Soil	CMMTATPGTGGQCVQNPWYLQYGEHGERRGGDARLRPRRQ
Ga0307468_1015023971	3300031740	Hardwood Forest Soil	TCAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADERRRPRRQ
Ga0310892_111646352	3300031858	Soil	YSGRDGAYTCIFTSFEQCMMTATPGTGGSCVQNPWYARYGEHGRGQDGGDRRRSERQ
Ga0318530_104712322	3300031959	Soil	IGFGRDGARTCIFSSFEQCMMTATPGTGGQCVQNPWYLQYGEHGERRGGDARLRPRRQ
Ga0310902_102135751	3300032012	Soil	YSGRDGAYTCIFTSFEQCTMTATPGTGGSCVQNPWYARYGEPGRGQDGDDRRRPKRK
Ga0310902_109199401	3300032012	Soil	CAFSSFEQCMMTGGPGTGGSCVQNPWYLWYGEHGQGRVADERRRPRRQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094190

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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