Metagenome / Metatranscriptome Family F094347

Basic Information
Family ID	F094347
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	74 residues
Representative Sequence	MSDTADLTVRVLDDRDIVVAGAEFEVTYRREGHLGMLVATDALRERLTASKARFLAQAWKAAYKKARTLGWLSS
Number of Associated Samples	91
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	30.19 %
% of genes near scaffold ends (potentially truncated)	39.62 %
% of genes from short scaffolds (< 2000 bps)	95.28 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (53.774 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (11.321 % of family members)
Environment Ontology (ENVO)	Unclassified (33.019 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.679 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.30% β-sheet: 20.27% Coil/Unstructured: 32.43%
Feature Viewer

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Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00805	Pentapeptide	21.70
PF01921	tRNA-synt_1f	3.77
PF13549	ATP-grasp_5	0.94
PF00565	SNase	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	21.70
COG1384	Lysyl-tRNA synthetase, class I	Translation, ribosomal structure and biogenesis [J]	3.77

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.77 %
All Organisms	root	All Organisms	46.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.77 %
cellular organisms	root	All Organisms → cellular organisms	46.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.77 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	44.34 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.77 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	43.40 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.77 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	42.45 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.77 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	39.62 %
Lactobacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.77 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	33.96 %
Methyloligella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella	3.77 %
Lactobacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.77 %
Methyloceanibacter superfactus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	0.94 %
unclassified Methyloligella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella → unclassified Methyloligella	0.94 %
Lacticaseibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lacticaseibacillus	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.77 %
Methyloligella sp. GL2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella → unclassified Methyloligella → Methyloligella sp. GL2	0.94 %
Lacticaseibacillus rhamnosus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lacticaseibacillus → Lacticaseibacillus rhamnosus	0.94 %
Methyloceanibacter superfactus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_3954_length_975_cov_8.201026	Not Available	1007	Open in IMG/M
2228664021\|ICCgaii200_c0802792	Not Available	687	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0618278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	850	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101719494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	846	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101719692	Not Available	680	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101720637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1881	Open in IMG/M
3300000567\|JGI12270J11330_10002248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14153	Open in IMG/M
3300000890\|JGI11643J12802_11819399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1308	Open in IMG/M
3300004114\|Ga0062593_100201368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1586	Open in IMG/M
3300004114\|Ga0062593_100446992	Not Available	1176	Open in IMG/M
3300004156\|Ga0062589_100395757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1119	Open in IMG/M
3300004157\|Ga0062590_100195033	Not Available	1455	Open in IMG/M
3300004463\|Ga0063356_101070228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1159	Open in IMG/M
3300004463\|Ga0063356_102102004	Not Available	857	Open in IMG/M
3300004463\|Ga0063356_104740475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lacticaseibacillus → Lacticaseibacillus rhamnosus	585	Open in IMG/M
3300005105\|Ga0066812_1002172	Not Available	1008	Open in IMG/M
3300005105\|Ga0066812_1012243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	626	Open in IMG/M
3300005168\|Ga0066809_10107867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	688	Open in IMG/M
3300005328\|Ga0070676_10511950	Not Available	854	Open in IMG/M
3300005330\|Ga0070690_100283169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1183	Open in IMG/M
3300005332\|Ga0066388_100469796	Not Available	1897	Open in IMG/M
3300005332\|Ga0066388_101717176	Not Available	1112	Open in IMG/M
3300005332\|Ga0066388_104117487	Not Available	741	Open in IMG/M
3300005334\|Ga0068869_101116794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	690	Open in IMG/M
3300005438\|Ga0070701_10431863	Not Available	841	Open in IMG/M
3300005544\|Ga0070686_101856227	Not Available	514	Open in IMG/M
3300005578\|Ga0068854_102078963	Not Available	524	Open in IMG/M
3300005713\|Ga0066905_101256329	Not Available	664	Open in IMG/M
3300005719\|Ga0068861_100428042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1181	Open in IMG/M
3300005719\|Ga0068861_101655408	Not Available	632	Open in IMG/M
3300005764\|Ga0066903_103531536	Not Available	842	Open in IMG/M
3300005840\|Ga0068870_10999978	Not Available	596	Open in IMG/M
3300006059\|Ga0075017_101271040	Not Available	577	Open in IMG/M
3300006172\|Ga0075018_10107840	Not Available	1243	Open in IMG/M
3300006844\|Ga0075428_101716964	Not Available	655	Open in IMG/M
3300009098\|Ga0105245_10494967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1238	Open in IMG/M
3300009100\|Ga0075418_11915748	Not Available	645	Open in IMG/M
3300009176\|Ga0105242_10727837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	974	Open in IMG/M
3300009545\|Ga0105237_10162887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2229	Open in IMG/M
3300009637\|Ga0116118_1280734	Not Available	506	Open in IMG/M
3300009643\|Ga0116110_1286279	Not Available	525	Open in IMG/M
3300009792\|Ga0126374_10013867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella → unclassified Methyloligella → Methyloligella sp. GL2	3295	Open in IMG/M
3300010154\|Ga0127503_10543609	Not Available	538	Open in IMG/M
3300010358\|Ga0126370_10307263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella	1261	Open in IMG/M
3300010366\|Ga0126379_11675498	Not Available	741	Open in IMG/M
3300010399\|Ga0134127_11822925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	685	Open in IMG/M
3300011119\|Ga0105246_10821120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	827	Open in IMG/M
3300012884\|Ga0157300_1055457	Not Available	635	Open in IMG/M
3300012891\|Ga0157305_10243121	Not Available	538	Open in IMG/M
3300012912\|Ga0157306_10479370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	506	Open in IMG/M
3300012915\|Ga0157302_10238839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	674	Open in IMG/M
3300012955\|Ga0164298_10294472	Not Available	1002	Open in IMG/M
3300012964\|Ga0153916_12437736	Not Available	589	Open in IMG/M
3300012964\|Ga0153916_12687180	Not Available	561	Open in IMG/M
3300012985\|Ga0164308_10199880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1522	Open in IMG/M
3300012987\|Ga0164307_10070437	All Organisms → cellular organisms → Bacteria → Proteobacteria	2087	Open in IMG/M
3300012989\|Ga0164305_10867756	Not Available	755	Open in IMG/M
3300013100\|Ga0157373_11356174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	540	Open in IMG/M
3300013102\|Ga0157371_11187869	Not Available	587	Open in IMG/M
3300013296\|Ga0157374_10976942	Not Available	866	Open in IMG/M
3300017792\|Ga0163161_11014883	Not Available	709	Open in IMG/M
3300017792\|Ga0163161_11061926	Not Available	694	Open in IMG/M
3300017792\|Ga0163161_11455099	Not Available	600	Open in IMG/M
3300017947\|Ga0187785_10188162	Not Available	891	Open in IMG/M
3300017997\|Ga0184610_1085851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	981	Open in IMG/M
3300018017\|Ga0187872_10139626	Not Available	1169	Open in IMG/M
3300018054\|Ga0184621_10145668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	852	Open in IMG/M
3300019356\|Ga0173481_10053668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1397	Open in IMG/M
3300022694\|Ga0222623_10137845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	950	Open in IMG/M
3300025899\|Ga0207642_10751714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	617	Open in IMG/M
3300025914\|Ga0207671_10165532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1714	Open in IMG/M
3300025933\|Ga0207706_10559195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	984	Open in IMG/M
3300025936\|Ga0207670_10924574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	731	Open in IMG/M
3300025940\|Ga0207691_10646980	Not Available	893	Open in IMG/M
3300025940\|Ga0207691_10912570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	735	Open in IMG/M
3300025981\|Ga0207640_10039894	Not Available	2975	Open in IMG/M
3300026089\|Ga0207648_11126912	Not Available	736	Open in IMG/M
3300026118\|Ga0207675_100749252	Not Available	988	Open in IMG/M
3300027497\|Ga0208199_1015586	Not Available	1727	Open in IMG/M
3300027675\|Ga0209077_1137588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	681	Open in IMG/M
3300027876\|Ga0209974_10074580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1161	Open in IMG/M
3300028587\|Ga0247828_10656292	Not Available	647	Open in IMG/M
3300028589\|Ga0247818_10700053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	702	Open in IMG/M
3300028608\|Ga0247819_10923518	Not Available	548	Open in IMG/M
3300028787\|Ga0307323_10336651	Not Available	541	Open in IMG/M
3300028809\|Ga0247824_10209359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1069	Open in IMG/M
3300031114\|Ga0308187_10352414	Not Available	568	Open in IMG/M
3300031720\|Ga0307469_10196366	All Organisms → cellular organisms → Bacteria	1571	Open in IMG/M
3300031720\|Ga0307469_10508448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1058	Open in IMG/M
3300031740\|Ga0307468_101624196	Not Available	605	Open in IMG/M
3300031740\|Ga0307468_101774878	Not Available	583	Open in IMG/M
3300031820\|Ga0307473_10673904	Not Available	723	Open in IMG/M
3300031854\|Ga0310904_10506126	Not Available	811	Open in IMG/M
3300031908\|Ga0310900_10976572	Not Available	695	Open in IMG/M
3300031943\|Ga0310885_10703742	Not Available	568	Open in IMG/M
3300031944\|Ga0310884_10057401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1771	Open in IMG/M
3300031949\|Ga0214473_10677794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1127	Open in IMG/M
3300032012\|Ga0310902_11306598	Not Available	514	Open in IMG/M
3300032013\|Ga0310906_10077822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1746	Open in IMG/M
3300032179\|Ga0310889_10064077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella	1477	Open in IMG/M
3300032180\|Ga0307471_100960764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella	1022	Open in IMG/M
3300032205\|Ga0307472_100122476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1842	Open in IMG/M
3300033551\|Ga0247830_10415048	Not Available	1049	Open in IMG/M
3300034090\|Ga0326723_0140162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1060	Open in IMG/M
3300034176\|Ga0364931_0046789	Not Available	1305	Open in IMG/M
3300034692\|Ga0373917_0021643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	862	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.75%
Host-Associated	Host-Associated	28.30%
Engineered	Engineered	0.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.43%
Plants	Host-Associated → Plants	28.30%
Aquatic	Environmental → Aquatic	11.32%
Bioremediation	Engineered → Bioremediation	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.55%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.21%
Freshwater	Environmental → Aquatic → Freshwater	6.60%
Sediment	Environmental → Aquatic → Sediment	4.72%
Peat	Environmental → Terrestrial → Peat	0.94%
Floodplain	Environmental → Terrestrial → Floodplain	0.94%
Metal	Engineered → Bioremediation → Metal	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.11%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	15.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.43%
Loam	Environmental → Terrestrial → Soil → Loam	8.49%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.72%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.77%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.94%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.94%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.94%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	15.09%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	11.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.43%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.60%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.72%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.77%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.94%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.94%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.94%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	11.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.60%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.60%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.77%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.83%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.89%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.89%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.89%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.94%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.94%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.94%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005105	Soil and rhizosphere microbial communities from Laval, Canada - mgHPC	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009637	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012884	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2	Environmental	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027675	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M
3300034692	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A0.3	Engineered	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_03356240	2140918013	Soil	MSDTTDLTVRVLDDRDIVVAGVEFEVTYRRDGHLGMLVATDALRERLTASKARFLAAAWKAAYKKARTLGWLSS
ICCgaii200_08027921	2228664021	Soil	MSETSDLTVRVLDDRDIVVGMAGSGFEVTYRKDGKLPLLVATDHLRGRVTSSKAKFLAQAWKATYQKAKTLGWLN
ICChiseqgaiiDRAFT_06182782	3300000033	Soil	MLMSETSDLTVRVLDDRDIVVGMAGSGFEVTYRKDGKLPLLVATDHLRGRVTSSKAKFLAQAWKATYQKAKTLGWLN*
INPhiseqgaiiFebDRAFT_1017194942	3300000364	Soil	MSDTADLTVRVLDDRDIVVAGAEFEVTYRREGHLGMLVATDALRERLTASKARFLAEAWKAAYKKARTLGWLSS*
INPhiseqgaiiFebDRAFT_1017196922	3300000364	Soil	DDRDIVVAGVEFEVTYRRDGHLGMLVATDALRERLTASKARFLAAAWKAAYKKARTLGWLSS*
INPhiseqgaiiFebDRAFT_1017206372	3300000364	Soil	VLRACYYALVESPTMSDTTDLTVRVLDDRDIVVAGVEFEVTYRRDGHLGMLVATDALRERLTASKARFLAAAWKAAYKKARTLGWLSS*
JGI12270J11330_100022488	3300000567	Peatlands Soil	MSDTADLTVRVLDDRDIVIRTADTGFEVTYRKDGYFPMLIATDGMRDDLTPSKVKFLAQAWKAAYKTARTLGWLKS*
JGI11643J12802_118193993	3300000890	Soil	MLMSETSDLTVRVLDDRDIVVGMAGSGFEVTYRKDGKLPLLVATDHLRGRVTSSKAKFLAQAWKA
Ga0062593_1002013681	3300004114	Soil	MSDTSDLTVRVLDDRDIVVVMAGTGFEVTYRKDGQLPMLVATDQLRGGVTSSKAKFLAQAWKVAYQRAKTLGWLAR*
Ga0062593_1004469921	3300004114	Soil	TMSDTTDLTVRVLDDRDIVVAGVEFEVTYRRDGHLGMLVATDALRERLTASKARFLAAAWKAAYKKARTLGWLSS*
Ga0062589_1003957571	3300004156	Soil	MSDTSDLTVRVLDDRDIVVVMAGTGFEVTYRKDGQLPMLVATDQLRGGVTSSKAKFLAQAWKVAYQKAKTLSWLAR*
Ga0062590_1001950332	3300004157	Soil	MSDTTDLTVRVLDDRDIVVAGVEFEVTYRRDGHLGMLVATDALRERLTASKARFLAAAWKAAYKKARTLGWLSS*
Ga0063356_1010702283	3300004463	Arabidopsis Thaliana Rhizosphere	MSDTSDLTVRVLDDRDIVVVMAGTGFEVTYRKDGQLPMLVATDQLRGGVTSSKAKFLAQAWKVAYQKAKTLGWLAR*
Ga0063356_1021020042	3300004463	Arabidopsis Thaliana Rhizosphere	MSDIADLTVRVLDDRDIVVAGAEFEVTYRREGHLGMLVATDALRERLTASKARFLAAAWKAAYKKARTLGWLSS*
Ga0063356_1047404751	3300004463	Arabidopsis Thaliana Rhizosphere	MLMSETSDLTVRVLDDRDIVVGMAGSGFEVTYRKDGKLPLLVATDHLRGRVTSSKAKFLAQAWKAAYQKAKTLGWLN*
Ga0066812_10021723	3300005105	Soil	MSDTNDLTVRVLDDRDIVVAGAEFEVTYRKDGHLPMLIATDALREQMTASKVRFLAEAWKAAYKKARTLGWLAN*
Ga0066812_10122432	3300005105	Soil	MSDTADLTVRVLDDRDIVVAGAEFEVTYRREGHLGMLVATDALRERLTASKARFLAQAWKAAYKKARTLGWLSS*
Ga0066809_101078672	3300005168	Soil	MSDTADLTVRVLDDRDIVVAGPEFEVTYRREGHLGMLVATDGLRERLTASKARFLAQAWKAAYKKARTLGWLSS*
Ga0070676_105119501	3300005328	Miscanthus Rhizosphere	VLDDRDIVVVMAGTGFEVTYRKDGQLPMLVATDQLRGGVTSSKAKFLAQAWKVAYQKAKTLGWLAR*
Ga0070690_1002831691	3300005330	Switchgrass Rhizosphere	MSDTSDLTVRVLDDRDIVVVMAGTGFEVTYRKYGQLPMLVATDQLRGGVTSSKAKFLAQAWKVAYQKAKTLGWLAR*
Ga0066388_1004697962	3300005332	Tropical Forest Soil	MSDAADLTVRVLDDRDIVVAMDSTGYEVTYRKDGKMPMLVATDGLREKLTAAKVRFLAEAWKAAHKKARTLGWLAS*
Ga0066388_1017171762	3300005332	Tropical Forest Soil	MSDAADLTVRVLDDRDIVVVMDSTGYEVTYRKDGKMPMLVATDGLREKLTAAKVRFLAEAWKAAHKKARTLGWLAS*
Ga0066388_1041174873	3300005332	Tropical Forest Soil	MSDIADLTVRVLDDRDIVVAGAEFEVTYRREGHLGMLVATDALRERLTASKARFLAEAWKAAYKKARTLGWLSS*
Ga0068869_1011167942	3300005334	Miscanthus Rhizosphere	MSDTADLTVRVLDDRDIVVAGPEFEVTYRREGHLGMLVATDALRERLTASKARFLAQAWKAAYKKARTLGWLSS*
Ga0070701_104318631	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	DLTVRVLDDRDIVVVMAGTGFEVTYRKDGQLPMLVATDQLRGGVTSSKAKFLAQAWKVAYQKAKTLGWLAR*
Ga0070686_1018562271	3300005544	Switchgrass Rhizosphere	VLDDRDIVVAGPEFEVTYRREGHLGMLVATDALRERLTASKARFLAQAWKAAYKKARTLGWLSS*
Ga0068854_1020789631	3300005578	Corn Rhizosphere	MSDTSDHTVRVLDDRDIVVVMAGTGFEVTYRKDGQLPMLVATDQLRGGVTSSKAKFLAQAWKVAYQKAKTLGWLAR*
Ga0066905_1012563291	3300005713	Tropical Forest Soil	LVGSLNMSDIADLTVRVLDDRDIVVAGAEFEVTYRREGHPGMLVATDALRERLTASKARFLAEAWKAAYKKARTLGWLSS*
Ga0068861_1004280421	3300005719	Switchgrass Rhizosphere	MSDTTDLTVRVLDDRDIVVAGAEFEVTYRKDGHLPMLIATDALREQMTASKVRFLAEAWKAAYKKARTLGWLAN*
Ga0068861_1016554082	3300005719	Switchgrass Rhizosphere	MSDTSDLTVRVLDDRDIVVVMAGTGFEVTYRKDGQLPMLVATDQLRGGVTSSKAKFLAQAWKVAYQKAKTLGWLAP*
Ga0066903_1035315361	3300005764	Tropical Forest Soil	MSDAADLTVRVLDDRDIVVAMDGTGYEVTYRKDGKMPMLVATDGLREKLTAAKVRFLAEAWKAAHKKARTLGWLAS*
Ga0068870_109999783	3300005840	Miscanthus Rhizosphere	DRDIVVVMAGTGFEVTYRKDSKLPMLVATDHLRGRVTSSKAKFLAQAWKAAYQKAKTLGWLAH*
Ga0075017_1012710402	3300006059	Watersheds	LIPMSDTADLTVRVLDDRDIVVAMASTGYEVTYRKDGRLPMLIATDGLREKLTASKVRFLAEAWKAAYKKARTLGWLVS*
Ga0075018_101078402	3300006172	Watersheds	MSDTADLTVRVLDDRDIVVAMASTGYEVTYRKDGRLPVLIATDGLREKLTASKVRFLAEAWKAAYKKARTLGWLVS*
Ga0075428_1017169642	3300006844	Populus Rhizosphere	LTVRVLDDRDIVVVMAGTGFEVTYRKDGQLPMLVATDQLRGGVTSSKAKFLAQAWKVAYQKAKTLGWLAR*
Ga0105245_104949672	3300009098	Miscanthus Rhizosphere	MSDTSDLTVRVLDDRDIVVVMAGTGFEVTYRKVGQLPMLVATDQFRGGVTSSKANFLAQAWKVAYQKAKTLGWLAR*
Ga0075418_119157481	3300009100	Populus Rhizosphere	TTDLTVRVLDDRDIVVAGVEFEVTYRRDGHLGMLVATDALRERLTASKARFLAAAWKAAYKKARRLGWLSS*
Ga0105242_107278372	3300009176	Miscanthus Rhizosphere	ADLTVRVLDDRDIVVAGPEFEVTYRREGHLGMLVATDALRERLTASKARFLAQAWKAAYKKARTLGWLSS*
Ga0105237_101628871	3300009545	Corn Rhizosphere	MSDTADLIVRVLDDRDIVVAGPEFEVTYRREGHLGMLVATDALRERLTASKARFLAQAWKAAYKKARTLGWLSS*
Ga0116118_12807341	3300009637	Peatland	MSDTAGLTVRVLDDRDIVIRTADTGFEVTYRKDGYFPMLIATDGMRDDLTPSKVKFLAQAWKAAYKTARTLGWLKS*
Ga0116110_12862791	3300009643	Peatland	NAMSDTADLTVRVLDDRDIIIRTADTGFEVTYRKDGYFPMLIATDGMRDDLTPSKVKFLAQAWKAAYKTARTLGWLKS*
Ga0126374_100138671	3300009792	Tropical Forest Soil	MSDAADLTVRVLDDRDIVVAMDSTGYEVTYRKDGKMPMLVATDGLREKLTAAKVRFLAEAWKAAHKKAMTLGWLAS*
Ga0127503_105436092	3300010154	Soil	DLTVRVLDDRDIVVAMASTGYEVTYRKDGRLPVLIATDGLREKLTASKVRFLAEAWKAAYKKARTLGWLVS*
Ga0126370_103072631	3300010358	Tropical Forest Soil	LDDRDIVVAMDSTGYEVTYRKDGKMPMLVATDGLREKLTAAKVRFLAEAWKAAHKKARTLGWLAS*
Ga0126379_116754981	3300010366	Tropical Forest Soil	MSDAADLTVRVLDDRDIVVAMHSTGYEVTYRKDGKMPMLVATDGLREKLTAAKVRFLAEAWKAAHKKARTLGWLAS*
Ga0134127_118229251	3300010399	Terrestrial Soil	MSDTSDLTVRVLDDRDIVVVMAGTGFEVTYRKDGQLPMLVATDQLRGGVTSSKAKFLAQAWKVAYQKAKTL
Ga0105246_108211202	3300011119	Miscanthus Rhizosphere	MSDTADLTVRVLDDRDIVVAGPEFEVTYRREGHLGMLVATDALRERLTASKARFLAQAWKAAYKK
Ga0157300_10554571	3300012884	Soil	PIMSDTSDLTVRVLDDRDIVVVMAGTGFEVTYRKDGQLPMLVATDQLRGGVTSSKAKFLAQAWKVAYQKAKTLGWLAR*
Ga0157305_102431211	3300012891	Soil	DRDIVVVMAGTGFEVTYRKDGQLPMLVATDQLRGGVTSSKAKFLAQAWKVAYQKAKTLGWLAR*
Ga0157306_104793701	3300012912	Soil	MSDTSDLTVHVLDDRDIVVVMAGTGFEVTYRKDGQLPMLVATDQLRGGVTSSKAKFLAQAWKVAYQKAKTLGWLAR*
Ga0157302_102388392	3300012915	Soil	MSDTTDLTVRVLHDRDIVVAGVEFEVTYRRDGHLGMLVATDALRERLTASKARFLAAAWKAAYKKAR
Ga0164298_102944722	3300012955	Soil	MSDTVDLTVRVLDDRDIVVAMAGTGYEVTHRKDGKTPMLIATDDLREKLTASKARFLAEAWKVAYKKARTLGWLAS*
Ga0153916_124377361	3300012964	Freshwater Wetlands	RVLDDRDIVVVMAGTGFEVTYRKDGKLPMLVATDHLRGRVTSSKAKFLAQAWKVAYQKAKTLGWLAR*
Ga0153916_126871801	3300012964	Freshwater Wetlands	MSDTADLTVRVLDDRDIVVAGAEFEVTYRREGHLGILVATDALRERLTASMARFLAQPWKAAYKKARTLGWLSS*
Ga0164308_101998803	3300012985	Soil	MSDTADLTVRVLDDRDIVVAGPEFEVTYRREGHLGMLVATDALRERLTASRARFLAQAWKAAYNKARTLGWLSS*
Ga0164307_100704375	3300012987	Soil	MSDTVDLTVRVLDDRDIVVAMAGTGYEVTHRKDGKTPMLIATDDLREKLTASKARFLAEAWKAAYKKGEDFRLARVLIRT*
Ga0164305_108677562	3300012989	Soil	MSDTVDLTVRVLDDRDIVVAMAGTGYEVTYRKDGKTPMLIATDDLREKLTASKARFLAEAWKVAYKKARTLGWLAS*
Ga0157373_113561742	3300013100	Corn Rhizosphere	MSDTSDLTVHVLDDRDIVVVMAGTGFEVTYRKDSKLPMLVATDHLRGRVTSSKAKFLAQAWKAA
Ga0157371_111878691	3300013102	Corn Rhizosphere	DDRDIVVAGPEFEVTYRREGHLGMLVATDALRERLTASKARFLAQAWKAAYKKARTLGWLSS*
Ga0157374_109769421	3300013296	Miscanthus Rhizosphere	MSDTSDHTVRVLDDRDIVVVMAGTGFEVTYRKDSKLPMLVATDQLRGGVTSSKAKFLAQAWKVAYQKAKTLGWLAR*
Ga0163161_110148832	3300017792	Switchgrass Rhizosphere	TPCYSALVESLGMSDIADLTVRVLDDRDIVVAGAEFEVTYRREGHLGMLVATDALRERLTASKARFLAEAWKAAYKKARTLGWLSS
Ga0163161_110619261	3300017792	Switchgrass Rhizosphere	MSDTTDLTVRVLDDRDIVVAGAEFEVTYRREGHLGMLVATDALRERLTASKARFLAEAWKAAYKKARTLGWLSS
Ga0163161_114550992	3300017792	Switchgrass Rhizosphere	LTVHVLDDRDIVVVMAGTGFEVTYRKDSKLPMLVATDHLRGRVTSSKAKFLAQAWKAAYQKAKTLGWLAH
Ga0187785_101881621	3300017947	Tropical Peatland	NRERYPMSDAADLTVRVLDDRDIVVAMDGTGYEVTYRKDGKMPMLVATDGLREKLTAAKVRFLAEAWKAAHKKARTLGWLAS
Ga0184610_10858512	3300017997	Groundwater Sediment	MSDTTDLTVRVLDDRDIVVAGAEFEVTYRKDGHLPMLIATDALREQMTASTVRFLAEAWKAAYKQARTLGWLAN
Ga0187872_101396262	3300018017	Peatland	MSDTAGLTVRVLDDRDIVIRTADTGFEVTYRKDGYFPMLIATDGMRDDLTPSKVKFLAQAWKAAYKTARTLGWLKS
Ga0184621_101456682	3300018054	Groundwater Sediment	MSDTADLTVRVLDVVVAGAEFEVTYRKDGHLPMLIATDALREQMTASKVRFLAEAWKAAYKKARTLGWLAN
Ga0173481_100536682	3300019356	Soil	MSDTSDLTVRVLDDRDIVVVMAGTGFEVTYRKDGQLPMLVATDQLRGGVTSSKAKFLAQAWKVAYQKAKTLGWLAR
Ga0222623_101378452	3300022694	Groundwater Sediment	MSDTADLTVRVLDDRDIVVAGAEFEVTYRKDGHLPMLIATDALREQMTASKVRFLAEAWKAAYKKARTLGWLAN
Ga0207642_107517141	3300025899	Miscanthus Rhizosphere	MSDTADLTVRVLDDRDIVVAGPEFEVTYRREGHLGMLVATDALRERLTASKARFLAQAWKAAYKKARTLGWLSS
Ga0207671_101655323	3300025914	Corn Rhizosphere	DLTVRVLDDRDIVVAGPEFEVTYRREGHLGMLVATDALRERLTASKARFLAQAWKAAYKKARTLGWLSS
Ga0207706_105591952	3300025933	Corn Rhizosphere	MSDTADLTVRVLDDRDIVVAGPEFEVTYRREGHLGMLVATDALRERLTASKARFLAEAWKAAYKK
Ga0207670_109245741	3300025936	Switchgrass Rhizosphere	MSDTADLTVRVLDDRDIVVAGPEFEVTYRREGHLGMLVATDALRERLTASKARFLAQAWKAA
Ga0207691_106469801	3300025940	Miscanthus Rhizosphere	GMSDTADLTVRVLDDRDIVVAGPEFEVTYRREGHLGMLVATDALRERLTASKARFLAQAWKAAYKKARTLGWLSS
Ga0207691_109125701	3300025940	Miscanthus Rhizosphere	MSDTSDLTVRVLDDRDIVVVMAGTGFEVTYRKDGQLPMLVATDQLRGGVTSSKAKFLAQAWKVAYQKAKTLGW
Ga0207640_100398943	3300025981	Corn Rhizosphere	MSDTSDHTVRVLDDRDIVVVMAGTGFEVTYRKDGQLPMLVATDQLRGGVTSSKAKFLAQAWKVAYQKAKTLGWLAR
Ga0207648_111269121	3300026089	Miscanthus Rhizosphere	VLDDRDIVVVMAGTGFEVTYRKDGQLPMLVATDQLRGGVTSSKAKFLAQAWKVAYQKAKTLGWLAR
Ga0207675_1007492521	3300026118	Switchgrass Rhizosphere	MSDTADLTVRVLDDRDIVVAGPEFEVTYRREGHLGMLVATDALRERLTASKARFLAQAWEAAYKKARTLGWLSS
Ga0208199_10155863	3300027497	Peatlands Soil	MSDTADLTVRVLDDRDIVIRTADTGFEVTYRKDGYFPMLIATDGMRDDLTPSKVKFLAQAWKAAYKTARTLGWLKS
Ga0209077_11375882	3300027675	Freshwater Sediment	MSDTSDLTVRVLDDRDIVVVMAGTGFEVTYRKDGQLPMLVATDQLRGGVTSSKAKFLAQAWKVAYQKAKTLG
Ga0209974_100745802	3300027876	Arabidopsis Thaliana Rhizosphere	MSDTTDLTVRVLDDRDIVVAGVEFEVTYRRDGHLGMLVATDALRERLTVSKARFLAAAWKAAYKKARTLGWLSS
Ga0247828_106562921	3300028587	Soil	DTTDLTVRVLDDRDIVVAGAGFEVTYRKDGHLPMLIATDALREQMTASKVRFLAEAWKAAYKKARTLGWLAN
Ga0247818_107000532	3300028589	Soil	MSDTTDLTVRVLDDRDIVVAGAGFEVTYRKDGHLPMLIATDALREQMTASKVRFLAEAWKAAYKKARTLGWLAN
Ga0247819_109235181	3300028608	Soil	MSDTSDLTVRVLDDRDIVVVMAGTGFEVTYRKDGQLPMLVATDQLRGGVTSSKAKFLAQAWKVA
Ga0307323_103366511	3300028787	Soil	WVPGPCYCALVGSPGMSDTADLTVRVLDDRDIVVAGAEFEVTYRKDGHLPMLIATDALREQMTASKVRFLAEAWKAAYKKARTLGWLAN
Ga0247824_102093591	3300028809	Soil	YAWVPTSCYYALVGSPGMSDTTDLTVRVLDDRDIVVAGAGFEVTYRKDGHLPMLIATDALREQMTASKVRFLAEAWKAAYKKARTLGWLAN
Ga0308187_103524141	3300031114	Soil	TDLTVRVLDDRDIVVAGAEFEVTYRKDGHLPMLIATDALREQMTASKVRFLAEAWKAAYKKARTLGWLAN
Ga0307469_101963662	3300031720	Hardwood Forest Soil	MSDTTDLTVRVLDDRDIVVAGAEFEVTYRKDGHLPMLIATDALREQMTASKVRFLAEAWKAAYKKARTLGWLAN
Ga0307469_105084481	3300031720	Hardwood Forest Soil	MSDTVDLTVRVLDDRDIVVAGAEFEVTYRREGHLGMLVATDALRERLTASKARFLAEAWKAAYKKARTLGWLSS
Ga0307468_1016241961	3300031740	Hardwood Forest Soil	PCYYALVGSPGMSDTADLTVRVLDDRDIVVAGAEFEVTYRREGHLGMLVATDALRERLTASKARFLAEAWKAAYKKARTLGWLSS
Ga0307468_1017748781	3300031740	Hardwood Forest Soil	LVFTPCYYALVESLGMSDTVDLTVRVLDDRDIVVAGAEFEVTYRREGHLGMLVATDALRERLTASKARFLAQAWKAAYKKARTLGWLSS
Ga0307473_106739042	3300031820	Hardwood Forest Soil	MSDTTDLTVRVLDNRDIVVAGAEFEVTYRKDGHLPMLIATDALREQMTASKVRFLAEAWKAAYKKARTLGWLAN
Ga0310904_105061261	3300031854	Soil	MSDTSDLAVRVLDDRDIVVVMAGTGFEVTYRKDGQLPMLVATDQLRGGVTSSKAKFLAQAWKVAYQKAKTLGWLAR
Ga0310900_109765721	3300031908	Soil	MSDTADLTVRVLDDRDIVVAGPEFEVTYRREGHLGMLVATDALRERLTTSKARFLAQAWKAAYKKARTLGWLSS
Ga0310885_107037421	3300031943	Soil	VFTPCYYALVESLSMSDTADLTVRVLDDRDIVVAGPEFEVTYRREGHLGMLVATDALRERLTASKARFLAQAWKAAYKKARTLGWLSS
Ga0310884_100574012	3300031944	Soil	MSDTSDLTVRVLDDIVVVMAGTGFEVTYRKDGQLPMLVATDQLRGGVTSSKAKFLAQAWKVAYQKAKTLGWLAR
Ga0214473_106777942	3300031949	Soil	MSDTSDLTVHVLDDRDIVVAMDGTGFEVTYRKDGQLPMLVATDQLRSGVTSSKAKFLAQAWKVAYQKAKTLGWLAR
Ga0310902_113065981	3300032012	Soil	ESLSMSDTADLTVRVLDDRDIVVAGPEFEVTYRREGHLGMLVATDALRERLTASKARFLAAAWKAAYKKARALGWLAS
Ga0310906_100778223	3300032013	Soil	MSDIADLTVRVLDDRDIVVAGAEFEVTYRREGHLGMLVATDALRERLTASKARFLAAAWKAAYKKARTLGWLSS
Ga0310889_100640773	3300032179	Soil	MSDIADLTVRVLDDRDIVVAGAEFEVTYRREGHLGMLVATDALRERLTASKARFLAQAWKAAYKKARTLGWLSS
Ga0307471_1009607642	3300032180	Hardwood Forest Soil	STDLTVRVLDDRDIVVAGAEFEVTYRKDGHLPMLIATDALREQMTASKVRFLAEAWKAAYKKARTLGWLAN
Ga0307472_1001224762	3300032205	Hardwood Forest Soil	MSDTNDLTVRVLDDRDIVVAGAEFEVTYRKDGHLPMLIATDALREQMTASKVRFLAEAWKAAYKKARTLGWLAN
Ga0247830_104150481	3300033551	Soil	MSDTADLTVRVLDDRDIVVAGAEFEVTYRREGHLGMLVATDALRERLTASKARFLAEAWKAAYKKARTLGWLSS
Ga0326723_0140162_768_992	3300034090	Peat Soil	MSDTADLTVRVLDDRDIVVAGAEFEVTYRREGHLGMLVATDALRERLTASKARFLAQAWKAAYKKARTLGWLSS
Ga0364931_0046789_960_1190	3300034176	Sediment	MSDTVDLTVRVLDDRDIVVGMTSTGFEVTYRRESHLPMLIATDGLREKLSASKARFLAEAWKAAYKKARTLGWLSS
Ga0373917_0021643_424_654	3300034692	Sediment Slurry	MSDTSDLTVRVLDNRDIVVVMAGTGFEVTYRKDGQLPMLVATDQLRGGVTSSKAKFLAQAWKVAYQKAKTLGWLAR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094347

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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