Metagenome / Metatranscriptome Family F094369

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094369
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	48 residues
Representative Sequence	MEEGYTQLGTVLTDQRPEDSEGDGVIVVGRFKGDPYDGVQLSYDAGR
Number of Associated Samples	77
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	90.57 %
% of genes near scaffold ends (potentially truncated)	89.62 %
% of genes from short scaffolds (< 2000 bps)	86.79 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (52.830 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (28.302 % of family members)
Environment Ontology (ENVO)	Unclassified (34.906 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.453 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 31.91% Coil/Unstructured: 68.09%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF06736	TMEM175	4.72
PF07883	Cupin_2	3.77
PF03091	CutA1	1.89
PF02371	Transposase_20	1.89
PF12697	Abhydrolase_6	1.89
PF02148	zf-UBP	1.89
PF01557	FAA_hydrolase	0.94
PF13359	DDE_Tnp_4	0.94
PF06525	SoxE	0.94
PF00583	Acetyltransf_1	0.94
PF07784	DUF1622	0.94
PF05977	MFS_3	0.94
PF14659	Phage_int_SAM_3	0.94
PF07992	Pyr_redox_2	0.94
PF12307	DUF3631	0.94
PF01494	FAD_binding_3	0.94
PF01609	DDE_Tnp_1	0.94
PF00211	Guanylate_cyc	0.94
PF12146	Hydrolase_4	0.94
PF00589	Phage_integrase	0.94
PF04978	DUF664	0.94
PF03633	Glyco_hydro_65C	0.94
PF01345	DUF11	0.94
PF00512	HisKA	0.94
PF01872	RibD_C	0.94
PF13340	DUF4096	0.94
PF00171	Aldedh	0.94
PF01545	Cation_efflux	0.94
PF12833	HTH_18	0.94
PF00561	Abhydrolase_1	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG3548	Uncharacterized membrane protein	Function unknown [S]	4.72
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.89
COG1324	Divalent cation tolerance protein CutA	Inorganic ion transport and metabolism [P]	1.89
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.89
COG5207	Uncharacterized Zn-finger protein, UBP-type	General function prediction only [R]	1.89
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.94
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.94
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.94
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.94
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.94
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.94
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.94
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.94
COG1554	Phosphatase/phosphodiesterase/kojibiose phosphorylase YcjT/PafA/Npp1, AlkP superfamily	Carbohydrate transport and metabolism [G]	0.94
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.94
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.94
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.94
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.94
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.94
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.94
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.94
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.94
COG4828	Uncharacterized membrane protein	Function unknown [S]	0.94
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.94
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.94
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.83 %
Unclassified	root	N/A	47.17 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.83 %
Unclassified	root	N/A	47.17 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.83 %
Unclassified	root	N/A	47.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.17 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	40.57 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.17 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	30.19 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.17 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	25.47 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.17 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.83 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.89 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	0.94 %
Glycomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Glycomycetales	0.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.94 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.94 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.94 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.17 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.83 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.94 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.94 %
Glycomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Glycomycetales → Glycomycetaceae	0.94 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.94 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.94 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.17 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.83 %
Rhizocola	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rhizocola	0.94 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.94 %
Glycomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Glycomycetales → Glycomycetaceae → Glycomyces	0.94 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.94 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.94 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.17 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.83 %
Actinomadura namibiensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura namibiensis	0.94 %
Rhizocola hellebori	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rhizocola → Rhizocola hellebori	0.94 %
Glycomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Glycomycetales → Glycomycetaceae → Glycomyces	0.94 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.94 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.94 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2209111020\|2221175256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1659	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101577995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1020	Open in IMG/M
3300000956\|JGI10216J12902_107527414	Not Available	724	Open in IMG/M
3300004016\|Ga0058689_10090601	Not Available	633	Open in IMG/M
3300004463\|Ga0063356_103397754	Not Available	686	Open in IMG/M
3300004463\|Ga0063356_104313866	Not Available	612	Open in IMG/M
3300005366\|Ga0070659_101548949	All Organisms → cellular organisms → Bacteria → Terrabacteria group	591	Open in IMG/M
3300005436\|Ga0070713_101445571	All Organisms → cellular organisms → Bacteria → Terrabacteria group	667	Open in IMG/M
3300005439\|Ga0070711_100625064	Not Available	901	Open in IMG/M
3300005562\|Ga0058697_10023269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2190	Open in IMG/M
3300005562\|Ga0058697_10243285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	835	Open in IMG/M
3300005562\|Ga0058697_10290744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	776	Open in IMG/M
3300006058\|Ga0075432_10012913	All Organisms → cellular organisms → Bacteria	2838	Open in IMG/M
3300006169\|Ga0082029_1230295	All Organisms → cellular organisms → Bacteria	1918	Open in IMG/M
3300006237\|Ga0097621_101026470	All Organisms → cellular organisms → Bacteria → Terrabacteria group	772	Open in IMG/M
3300006573\|Ga0074055_10008332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1028	Open in IMG/M
3300006581\|Ga0074048_13391370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura namibiensis	630	Open in IMG/M
3300006852\|Ga0075433_10052462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3553	Open in IMG/M
3300007076\|Ga0075435_100019441	All Organisms → cellular organisms → Bacteria	5189	Open in IMG/M
3300009162\|Ga0075423_10070892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3618	Open in IMG/M
3300009789\|Ga0126307_10467829	All Organisms → cellular organisms → Bacteria	1017	Open in IMG/M
3300009789\|Ga0126307_10670829	Not Available	836	Open in IMG/M
3300009789\|Ga0126307_11111410	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300009840\|Ga0126313_10623013	Not Available	870	Open in IMG/M
3300009840\|Ga0126313_10771301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	781	Open in IMG/M
3300010037\|Ga0126304_10871963	Not Available	612	Open in IMG/M
3300010037\|Ga0126304_11028701	Not Available	562	Open in IMG/M
3300010038\|Ga0126315_10475097	Not Available	794	Open in IMG/M
3300010038\|Ga0126315_11239261	Not Available	507	Open in IMG/M
3300010040\|Ga0126308_10821502	Not Available	644	Open in IMG/M
3300010041\|Ga0126312_11009670	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300010044\|Ga0126310_11215535	Not Available	606	Open in IMG/M
3300010166\|Ga0126306_10017014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4742	Open in IMG/M
3300010166\|Ga0126306_10105761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2040	Open in IMG/M
3300011400\|Ga0137312_1067477	Not Available	612	Open in IMG/M
3300012354\|Ga0137366_10066055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2758	Open in IMG/M
3300012354\|Ga0137366_10179004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1590	Open in IMG/M
3300012354\|Ga0137366_11084927	Not Available	552	Open in IMG/M
3300012355\|Ga0137369_10207313	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1510	Open in IMG/M
3300012359\|Ga0137385_11334520	Not Available	580	Open in IMG/M
3300012360\|Ga0137375_10548481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	973	Open in IMG/M
3300012360\|Ga0137375_11155370	Not Available	596	Open in IMG/M
3300012939\|Ga0162650_100045487	Not Available	709	Open in IMG/M
3300013307\|Ga0157372_11641786	Not Available	740	Open in IMG/M
3300014487\|Ga0182000_10328731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	649	Open in IMG/M
3300015077\|Ga0173483_10739141	Not Available	560	Open in IMG/M
3300018051\|Ga0184620_10045734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1213	Open in IMG/M
3300018066\|Ga0184617_1023787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1390	Open in IMG/M
3300018066\|Ga0184617_1064392	Not Available	962	Open in IMG/M
3300018073\|Ga0184624_10115942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1157	Open in IMG/M
3300018073\|Ga0184624_10212285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rhizocola → Rhizocola hellebori	865	Open in IMG/M
3300018076\|Ga0184609_10249311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	830	Open in IMG/M
3300018076\|Ga0184609_10577809	Not Available	506	Open in IMG/M
3300018081\|Ga0184625_10266766	Not Available	896	Open in IMG/M
3300018422\|Ga0190265_11342288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	831	Open in IMG/M
3300018466\|Ga0190268_11320999	Not Available	610	Open in IMG/M
3300018476\|Ga0190274_10380703	Not Available	1358	Open in IMG/M
3300018476\|Ga0190274_12055822	Not Available	668	Open in IMG/M
3300021078\|Ga0210381_10412354	Not Available	500	Open in IMG/M
3300022756\|Ga0222622_10634413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	773	Open in IMG/M
3300025634\|Ga0208589_1153461	All Organisms → cellular organisms → Bacteria → Terrabacteria group	523	Open in IMG/M
3300025916\|Ga0207663_11082470	Not Available	644	Open in IMG/M
3300025928\|Ga0207700_11807580	All Organisms → cellular organisms → Bacteria → Terrabacteria group	537	Open in IMG/M
3300025929\|Ga0207664_11358960	All Organisms → cellular organisms → Bacteria → Terrabacteria group	631	Open in IMG/M
3300026557\|Ga0179587_10637290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	702	Open in IMG/M
3300028705\|Ga0307276_10056964	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300028712\|Ga0307285_10014076	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1766	Open in IMG/M
3300028712\|Ga0307285_10076927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	860	Open in IMG/M
3300028717\|Ga0307298_10161920	Not Available	652	Open in IMG/M
3300028719\|Ga0307301_10171943	All Organisms → cellular organisms → Bacteria → Terrabacteria group	700	Open in IMG/M
3300028744\|Ga0307318_10011401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2848	Open in IMG/M
3300028744\|Ga0307318_10024813	Not Available	1938	Open in IMG/M
3300028744\|Ga0307318_10265262	Not Available	599	Open in IMG/M
3300028754\|Ga0307297_10359754	All Organisms → cellular organisms → Bacteria → Terrabacteria group	533	Open in IMG/M
3300028771\|Ga0307320_10014367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	2835	Open in IMG/M
3300028771\|Ga0307320_10033702	Not Available	1869	Open in IMG/M
3300028771\|Ga0307320_10114113	Not Available	1032	Open in IMG/M
3300028791\|Ga0307290_10025199	Not Available	2092	Open in IMG/M
3300028796\|Ga0307287_10005999	Not Available	3981	Open in IMG/M
3300028796\|Ga0307287_10377712	Not Available	534	Open in IMG/M
3300028811\|Ga0307292_10234537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	760	Open in IMG/M
3300028814\|Ga0307302_10029512	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2515	Open in IMG/M
3300028824\|Ga0307310_10178763	Not Available	993	Open in IMG/M
3300028872\|Ga0307314_10033108	All Organisms → cellular organisms → Bacteria	1235	Open in IMG/M
3300028872\|Ga0307314_10167851	Not Available	644	Open in IMG/M
3300028875\|Ga0307289_10025000	All Organisms → cellular organisms → Bacteria	2324	Open in IMG/M
3300028880\|Ga0307300_10045024	Not Available	1237	Open in IMG/M
3300028880\|Ga0307300_10262748	Not Available	575	Open in IMG/M
3300030514\|Ga0268253_10122904	All Organisms → cellular organisms → Bacteria → Terrabacteria group	778	Open in IMG/M
3300030987\|Ga0308155_1018067	Not Available	631	Open in IMG/M
3300031114\|Ga0308187_10351905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	568	Open in IMG/M
3300031474\|Ga0170818_112048060	Not Available	502	Open in IMG/M
3300031548\|Ga0307408_102109831	Not Available	543	Open in IMG/M
3300031731\|Ga0307405_10107055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1887	Open in IMG/M
3300031824\|Ga0307413_10339051	Not Available	1155	Open in IMG/M
3300031901\|Ga0307406_11910038	Not Available	529	Open in IMG/M
3300031911\|Ga0307412_10360579	Not Available	1170	Open in IMG/M
3300031911\|Ga0307412_11904447	Not Available	549	Open in IMG/M
3300031995\|Ga0307409_100450340	Not Available	1242	Open in IMG/M
3300031995\|Ga0307409_101414343	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300032002\|Ga0307416_100446397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1345	Open in IMG/M
3300032002\|Ga0307416_101438203	Not Available	795	Open in IMG/M
3300032002\|Ga0307416_102378784	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300032004\|Ga0307414_10266563	All Organisms → cellular organisms → Bacteria	1432	Open in IMG/M
3300032004\|Ga0307414_12053766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Glycomycetales → Glycomycetaceae → Glycomyces	534	Open in IMG/M
3300032159\|Ga0268251_10461715	Not Available	561	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.58%
Host-Associated	Host-Associated	26.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.21%
Plants	Host-Associated → Plants	26.42%
Aquatic	Environmental → Aquatic	10.38%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.26%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.92%
Sediment	Environmental → Aquatic → Sediment	9.43%
Phylloplane	Host-Associated → Plants → Phylloplane	4.72%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.89%
Freshwater	Environmental → Aquatic → Freshwater	0.94%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.94%
Roots	Host-Associated → Plants → Roots	0.94%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.43%
Loam	Environmental → Terrestrial → Soil → Loam	4.72%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	4.72%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.89%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.94%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.94%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	52.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.43%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.72%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	4.72%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.94%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.94%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.94%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	28.30%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	13.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	12.26%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	7.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.55%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	4.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.89%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.89%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.94%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.94%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.94%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.94%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.94%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2209111020	Grass soil microbial communities from Rothamsted Park, UK - FC (Ethanol 20%) assembled	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300011400	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT133_2	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025634	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300030514	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300030987	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_144 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2221970656	2209111020	Grass Soil	MEEGYTQLGTVLTDQRPEDSEADGVIVVGRFKGDPYDGVQLSYDAGRRTCT
INPhiseqgaiiFebDRAFT_1015779951	3300000364	Soil	MEEGYTQLGTVLTDQRPEDSEADGVIVVGRFKGDPYDGVQLSYD
JGI10216J12902_1075274141	3300000956	Soil	MEEGYTRLGTVLTDQRPEGSEGAGVIVVGRFKGDPY
Ga0058689_100906012	3300004016	Agave	MEEGYTQLGSVLTDQRPEDSAGDGVIVVGRFKGDPYDGVQLSYD
Ga0063356_1033977541	3300004463	Arabidopsis Thaliana Rhizosphere	MEEGYTQLGTVLIDQRPEDSEEEGVIVVGRIKGDPYDGVQLSYDAGRR
Ga0063356_1043138661	3300004463	Arabidopsis Thaliana Rhizosphere	MEEAYTQLGTVLIDQRLEDSEGDGVIVVGRFKGDPYDGVQ
Ga0070659_1015489492	3300005366	Corn Rhizosphere	MEGTDMEEGYTQLGTVLTDQRPKDSEGDGVILVGRFKGDPYDGVQLNYDAGRRNLYLTPEAALR
Ga0070713_1014455711	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MEEGYTQLGTVLTDQRPKDSEGDGVILVGRFKGDPYDGVQL
Ga0070711_1006250642	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MEEGDTQLGTVLTDQRPEDSEGDGVIVVGRFKGDPYDGVQLSYNAGRRTCT*
Ga0058697_100232691	3300005562	Agave	MEEGYTQLGSVLTDQRPEDSEGDGVIVVGRFKGDPYDGVQLSYDAGRRNLY
Ga0058697_102432851	3300005562	Agave	MEEGYTQLGTVLTDQRPQDSEGDGVIVVGRFKGDPYD
Ga0058697_102907442	3300005562	Agave	MEAGYTQLGTVLTDQRPEDSEEDGVIVVGRFKGDPYDGV
Ga0075432_100129131	3300006058	Populus Rhizosphere	MEGGYTQLGTVLIDQRLAGSEEDGVIVVGRFKGDPCDGVQLSYDAGRRKL
Ga0082029_12302954	3300006169	Termite Nest	MSPKGLAEAGYTQLGTVLTGQRPEASEEAGVIVVGRFKGDPYDGVRLSYDAGRRKLYLTRDS*
Ga0097621_1010264702	3300006237	Miscanthus Rhizosphere	MEGTDMEEGYTQLGTVLTDQRPKDSEGDGVILVGRFKGDPYDGVQLNYDAGRRNLYLTPEAA
Ga0074055_100083322	3300006573	Soil	MEEGYTQLGTVLTDQRPEDSEADGVIVVGRFKGEPYDGVQLSYDAGRRNLYLT
Ga0074048_133913701	3300006581	Soil	MEEGYTQVGTVLTDQRPEDSEGDGVIVVGRFKGVPYDGVQLSYDAGRRNLYLTPEGALR
Ga0075433_100524628	3300006852	Populus Rhizosphere	MEEGYTQLGTVLIDQRPEDSKEEGVIVVGRFKGEPYDGVQLSYDAGQRKLYLT
Ga0075435_1000194412	3300007076	Populus Rhizosphere	MDEGYTQLGTVLIDQRPKDSEEQGVIVVGRFKGESL*
Ga0075423_100708921	3300009162	Populus Rhizosphere	MDEGYTQLGTVLIDQRPKDSEEQGVIIVGRFKGDPYDGVQL
Ga0126307_104678291	3300009789	Serpentine Soil	MEDGYTQLGTVLTDRRPEDSEGDSVIVVGRFKGDPYDGVQLSYEAGRRNLYLTPE
Ga0126307_106708291	3300009789	Serpentine Soil	MEEGYTQLGTVLTDQRPEDSEGDGVIVVGRFKGDPYDGVQLSYDAGRRN
Ga0126307_111114101	3300009789	Serpentine Soil	MQALVRAKVRHMEDGYTQLGTVLTDRRPEDSEGDSVIVVGRFKGDPYDGVQLSYEAGRRNLYLTPE
Ga0126313_106230131	3300009840	Serpentine Soil	MEEGYTQLGTVLTDQRPEDSEGDGVIVVGRFKGDPYDGVQLS
Ga0126313_107713013	3300009840	Serpentine Soil	MEEGYTQLGTVLTDQRPQDSAGDGVIVVGRFKGDPYDG
Ga0126304_108719631	3300010037	Serpentine Soil	VRAVGDDQEVQQMEEGYTQLGIVLTDPRPENSEGDGVIVVGRFKGDPYDGVQLSYDAGRRNLY
Ga0126304_110287011	3300010037	Serpentine Soil	MEDGYTQLGTVLTDRRPEDSEGDSVIVVGRFKGDPYDGVQLSYEAGRRN
Ga0126315_104750973	3300010038	Serpentine Soil	MEEGYTQLGTVLTDQRPENSEGDGVIVVGRFKGDPYDGVQLSYDAGRR
Ga0126315_112392611	3300010038	Serpentine Soil	MEEGYTQLGTVLTDQRPEDSEGDGVIVVGRFKGDPYDG
Ga0126308_108215021	3300010040	Serpentine Soil	MEDGYTQLGTVLTDQRPEDSEGDGVIVVGRFKGDPYDGV
Ga0126312_110096702	3300010041	Serpentine Soil	MEEGYTQLGTVLTDQRPQDSEGAGVIIVGRFKGDRYDGVQLSYDAGRQSCT*
Ga0126310_112155352	3300010044	Serpentine Soil	MEEGYTQLGTVLIDQRPADGEEEGVIVVGRFKGDPYDGVQLSYDAGRRKLYLTL*
Ga0126306_100170141	3300010166	Serpentine Soil	MEEGYTQLGTVLTDQRPEDSEGDGVIVVGRFKGDPYDGVQLSYDAGRRTL
Ga0126306_101057611	3300010166	Serpentine Soil	MEDGYTQLGTVLTDQRPEDSEGDGVIVVGRFRGDPYDGVQL
Ga0137312_10674771	3300011400	Soil	MEDGYTQLGTVLTDRRPEDSEGDSVIVVGRFKGDPYDGVELS
Ga0137366_100660554	3300012354	Vadose Zone Soil	MEEGYTQLGTVLTDQRPEDSEGDGVIVVGRFKGDPYDGVQLSYDAGRRNLYLTPEAAQ
Ga0137366_101790044	3300012354	Vadose Zone Soil	MEEGYTQLGTVLTDQRPQDSEGDGVIVVGRFKGDPYDGVQLSYDAGRRNLYLTPEAAQ
Ga0137366_110849272	3300012354	Vadose Zone Soil	MQEGYTQLGSVLTDQRPEDSEGDGVIVVGRFKGDPYDGVQLSYD
Ga0137369_102073131	3300012355	Vadose Zone Soil	MQEGYTQLGTVLTDQRPEDSEGAGVIVVGRFKGDPYDGVQLSYDAGRRNLYLTPEA
Ga0137385_113345201	3300012359	Vadose Zone Soil	MEEGYTQLGSVLTDQRPEDSEGDGVIVVGRFKGDPYDGVQ
Ga0137375_105484811	3300012360	Vadose Zone Soil	MEEGYTQLGTVLTDQRPEDSEGDGVIVVGRFKGDPYDGVQLSYDAG
Ga0137375_111553702	3300012360	Vadose Zone Soil	MQEGYTQLGTVLTDQRPEDSEGAGVIVVGRFKGDPYDGVQLSYD
Ga0162650_1000454871	3300012939	Soil	MEEGYTQLGTVLTDQRPEDSEGDGVILVGRFKGDPYDGVQLSYDAG
Ga0157372_116417861	3300013307	Corn Rhizosphere	MEDGYTQLGTVLTDQRPKDSEGDGVIVVGRFKGDPYDGVQLSYDAGRRNLYLTPEGALRL
Ga0182000_103287312	3300014487	Soil	MQEGYTQLGTVLTDQRPPDSEGDGVIVVGRFKGEPYDGVQLSYDAGRR
Ga0173483_107391412	3300015077	Soil	MEEGYTQLGTVLTDQRPEDSGGDGVIVVGRFKGDPYDGVQLSYDAGRRNLYLTAEGAL
Ga0184620_100457343	3300018051	Groundwater Sediment	MEEGYTQLGTVLIDQRPEDSEGDGVIVVGRFKGDPYDGVQ
Ga0184617_10237871	3300018066	Groundwater Sediment	MEEGYTQLGTVLIDQRPEDSEGDGVIVVGRFKGDPYDGVQLSYDAGRRNLGEEASCRVAP
Ga0184617_10643922	3300018066	Groundwater Sediment	MDEGYTQLGTVLTDQRPQDSEGDGVIVVGRFKGDPY
Ga0184624_101159421	3300018073	Groundwater Sediment	MEEGYTQLGTVLIDQRPEDSEGDGVIVVGRFKGDPYDGVQLSYDAGR
Ga0184624_102122852	3300018073	Groundwater Sediment	MEDGYTQLGTVLTDRRPEDSDGDSVIVVGRFKGDPYDGVELSYDAGRRNLYLT
Ga0184609_102493111	3300018076	Groundwater Sediment	MEEGYTQLGTVLTDQRPEDLEGDGVIVVGRFKGDPYD
Ga0184609_105778091	3300018076	Groundwater Sediment	MEDGYTQLGTVLIDQRPEDSEGDGVIVVGRFKGDPYDGVQLS
Ga0184625_102667662	3300018081	Groundwater Sediment	MEDGYTQLGTVLTDRRPEDSDGDSVIVVGRFKGDPYDGVELSYDAGRRNLYLTPEG
Ga0190265_113422883	3300018422	Soil	MEEGYTQLGTVLTDQRPEESEGDGVIVVGRFKGDPYDGIQLSYDAGRRNLYLTPEGALRL
Ga0190268_113209992	3300018466	Soil	MQDGYTQLGSVLIDQRPEDSEGDGVIVVGRFKGDPYDGVQLSYE
Ga0190274_103807032	3300018476	Soil	MQEGYTQLGTVLTDQRPEDSEGDGVIVVGRFKGDPYDGVQLSYDAGQ
Ga0190274_120558221	3300018476	Soil	MEESYTQLGTVLTDQCPEDSEGDGVIVVGRFKGDPNDGVQLSYDAGQ
Ga0210381_104123541	3300021078	Groundwater Sediment	MEEGYTQLGTVLTDQRQANSEGDGVIVVGRFKGDPYDGVQLSYDAGRRKLYLTAEGAL
Ga0222622_106344132	3300022756	Groundwater Sediment	MEEGYTQLGTVLTDQRPEDSEGDGVIVVGRFKGDPYDGVQLSCDAGRR
Ga0208589_11534612	3300025634	Arctic Peat Soil	MQEGYTQLGTVLTDQRPEHSEGDGVIVVGRFKGDPYDGVQLSYDAGRRNLYLT
Ga0207663_110824701	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MEEGDTQLGTVLTDQRPEDSEGDGVIVVGRFKGDPYDGVQLSYNAGRRTCT
Ga0207700_118075801	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MEGTDMEEGYTQLGTVLTDQRPKDSEGDGVILVGRFKGDPYDGVQLNYDAG
Ga0207664_113589601	3300025929	Agricultural Soil	MEGTDMEEGYTQLGTVLTDQRPKDSEGDGVILVGRFKG
Ga0179587_106372901	3300026557	Vadose Zone Soil	MEEGYTQLGAVLTDQRPQDSEGDGVIVVGRFKGDPYDGVQLSYDAGRRNLYLT
Ga0307276_100569642	3300028705	Soil	MEEGYTQLGTVLTDQRPQDSAGAGVIVVGRFKGDPYDGVQLSCDAGRRNLYLTPEH
Ga0307285_100140762	3300028712	Soil	MEEGYTQLGTVLTDQRPEDRAGAGVIVVGRFKGDPYDGVQLSYDAGRRNLYL
Ga0307285_100769272	3300028712	Soil	MEEGYTQLGTVLTDQRPGDSEGDGVIVVGRFKGDPYDGVQLSYD
Ga0307298_101619201	3300028717	Soil	MEEGYTQLGTVLTDQRPEDSEGDGVIVVGRFKGDPYNGVQLSYDAGQRNLYLT
Ga0307301_101719433	3300028719	Soil	MDEGYTQLGTVLTDQRPQDSEGAGVIVVGRFKGDPYDGVQLSYDAGRRNLYL
Ga0307318_100114014	3300028744	Soil	MEEGYTQLGTVLTDQRPKDSEGDGVIVVGRFKGDPYDGVQLSYDA
Ga0307318_100248132	3300028744	Soil	MEEGYTQLGSVLIDQRPEDTEEEGVIVVGRFTGDPYDGVQLSYDAGRRNLGEEASCRVAP
Ga0307318_102652621	3300028744	Soil	MEEGYTQLGTVLTDQRPEDSAGAGVIVVGRFKGQPYDGVQL
Ga0307297_103597541	3300028754	Soil	MDEGYTQLGTVLTDQRPQDSTGDGVIVVGRFKGDPYDGVQLSY
Ga0307320_100143671	3300028771	Soil	MEEGYTQLGTVLTDQRPEDSERDGVIVVGRFKGDPYDGVQLSYDAGRRNLYLTPEGA
Ga0307320_100337021	3300028771	Soil	MEEGYTQLGTVLTDQRPPDSEGAGVIVVGRFKGDPYDGVQLSYDA
Ga0307320_101141131	3300028771	Soil	MEEGYTQLGTVLIDQRLADSEEEGVIVVGRFKGEPYDGVQLSY
Ga0307290_100251991	3300028791	Soil	MEEGYTQLGTVLTDQRQANSEGDGVIVVGRFKGDPYDGVQLSYDAGRRKLYLT
Ga0307287_100059991	3300028796	Soil	MEEGYTQLGTVLTDQRQANSEGDGVIVVGRFKGDPYDGVQLSYDAGRRKLYLTAEGA
Ga0307287_103777121	3300028796	Soil	MEEGYTQLGTVLPDQRPENSEGDGIIVVGRFKGDPYD
Ga0307292_102345371	3300028811	Soil	MEEGYTQLGTVLTDQRPENSEADGVIVVGRFKGDPYDGV
Ga0307302_100295121	3300028814	Soil	MEEGYTQLGTVLTDQRPEDRAGAGVIVVGRFKGDPYDGVQLSYDAGRRNLYLTPE
Ga0307310_101787631	3300028824	Soil	MEEGYTQLGTVLTDQRPEDSAGAGVIVVGRFKGDPYDGVQLSYDAGRRKLY
Ga0307314_100331082	3300028872	Soil	MEDGYTQLGTVLIDQRPEDSEGDGVIVVGRFKGDPYDGVQLSY
Ga0307314_101678512	3300028872	Soil	MEEGYTQLGSVLIDQRPEDTEEEGVIVVGRFKGDPYDGVQLSYDAGRRNLGEE
Ga0307289_100250001	3300028875	Soil	MEEGYTQLGTVLTDQRQANSEGDGVIVVGRFKGDPHDGVQLSYD
Ga0307300_100450241	3300028880	Soil	MEDGYTELGTVLIDQRPDDSEGDGVIVVGRFKGDPYDGVQLSY
Ga0307300_102627481	3300028880	Soil	MEEGYTQLGSVLTDQRPEDSEGDGVIVVGRFKGDPYNGVQLSYDAGQRNLY
Ga0268253_101229041	3300030514	Agave	MEEGYAQLGTVLTDQRPEDSEGDGVIVVGRFKGDPYDGV
Ga0308155_10180671	3300030987	Soil	MEEGYTQLGTVLTDQRQANSEGDGVIVVGRFKGDPYDG
Ga0308187_103519052	3300031114	Soil	MEEGYTRLGTVLTDERPEDSEGDGVIVVGRFKGDPYDGVQLSYDAGLRNLYLTPE
Ga0170818_1120480601	3300031474	Forest Soil	MEEGYTQLGTVLTDQRPEDSEEDGVIVVGRFKGDPYDGVQLS
Ga0307408_1021098311	3300031548	Rhizosphere	MEEGYTQLGTVLIDQRPQDSEEDGVIVVGRFIGDPYDGVQLSYD
Ga0307405_101070554	3300031731	Rhizosphere	MEDGYTQLGTVLTDQRPEDSEGDGVIVVGRFKGDPYDGVQLSYDAGRRNLYLTPEGALG
Ga0307413_103390512	3300031824	Rhizosphere	MEEGYTQLGTVLTDQRPEDSEGDGVIVVGRFKGDPYDGVQLSYDAGRRNLYL
Ga0307406_119100381	3300031901	Rhizosphere	MEEGYTQLGTVLTDQRPENSEGDGVIVVGRFKGDPYDGVELSYDA
Ga0307412_103605791	3300031911	Rhizosphere	MEVGYTQLGTVLIDQRPEDSEEDGVIVVGRFKGDPFDGVQLSYDAGRRTLYLT
Ga0307412_119044471	3300031911	Rhizosphere	MEEGYTQLGTVLTDQRPEDSAGDGVIVVGRFKGDPYDGVQLSYDAGRRNLYLT
Ga0307409_1004503402	3300031995	Rhizosphere	MEEGYTQLGTVLTDQRPEDSEGDGVIVVGRFKGDPYDGVQLSYDAGRRNLYLTPEGALR
Ga0307409_1014143431	3300031995	Rhizosphere	MEDGYTQLGTGLTDRRPEDSEGDSVIVVGRFKGDPYDGVQLSYEA
Ga0307416_1004463971	3300032002	Rhizosphere	MEEGYTQLGTVLTDQRPEDSEGDGVIVVGRFKGDPYDGVQLSYDAGR
Ga0307416_1014382032	3300032002	Rhizosphere	MEEGYTQLGTVLTDQRPEDSEGDGVIVVGRFKGDPYDGVQL
Ga0307416_1023787841	3300032002	Rhizosphere	MEDGYTQLGTGLTDRRPEDSEGDSVIVVGRFKGDPYDGVQLSYEAGRR
Ga0307414_102665631	3300032004	Rhizosphere	MEEGYTQLGSVLTDQRPPDSEGAGVIVVGRFKGDPYDGVQL
Ga0307414_120537661	3300032004	Rhizosphere	MEEGYTQLGTELTDQRPEDSEGDGVIVVGRFKGDPYDGVQLSYDAGRRNLYL
Ga0268251_104617151	3300032159	Agave	MQEGYTQLGTVLTDQRPPDSEGDGVIVVGRFKGEPYDGVQLSYDAGRRNLYL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094369

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences