Metagenome Family F094479

Basic Information
Family ID	F094479
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	52 residues
Representative Sequence	LANRELDILRDALREHVNALAVDIGPRTPSIPDSLVRAANYIHSVFEDAG
Number of Associated Samples	103
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.23 %
% of genes near scaffold ends (potentially truncated)	94.34 %
% of genes from short scaffolds (< 2000 bps)	94.34 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Most Common Taxonomy
Group	Bacteria (56.604 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.151 % of family members)
Environment Ontology (ENVO)	Unclassified (28.302 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.509 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.56% β-sheet: 0.00% Coil/Unstructured: 47.44%
Feature Viewer

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Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00480	ROK	23.58
PF00484	Pro_CA	5.66
PF07681	DoxX	5.66
PF00248	Aldo_ket_red	4.72
PF02586	SRAP	2.83
PF04389	Peptidase_M28	2.83
PF00106	adh_short	1.89
PF04343	DUF488	1.89
PF00989	PAS	0.94
PF05099	TerB	0.94
PF02163	Peptidase_M50	0.94
PF02656	DUF202	0.94
PF02566	OsmC	0.94
PF13924	Lipocalin_5	0.94
PF12146	Hydrolase_4	0.94
PF02739	5_3_exonuc_N	0.94
PF01887	SAM_HAT_N	0.94
PF13683	rve_3	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	47.17
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	5.66
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	5.66
COG4270	Uncharacterized membrane protein	Function unknown [S]	5.66
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	2.83
COG3189	Uncharacterized conserved protein YeaO, DUF488 family	Function unknown [S]	1.89
COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	Replication, recombination and repair [L]	0.94
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.94
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.94
COG1912	Stereoselective (R,S)-S-adenosylmethionine hydrolase (adenosine-forming)	Defense mechanisms [V]	0.94
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	0.94
COG3793	Tellurite resistance protein TerB	Inorganic ion transport and metabolism [P]	0.94

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.60 %
Unclassified	root	N/A	43.40 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.60 %
Unclassified	root	N/A	43.40 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.60 %
Unclassified	root	N/A	43.40 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.40 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	25.47 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.40 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	12.26 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.40 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.49 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.94 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.40 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	0.94 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.94 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.94 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.94 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.40 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	0.94 %
Variibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter	0.94 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.94 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.94 %
Methylotuvimicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylotuvimicrobium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.40 %
Sandaracinaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae	0.94 %
Variibacter gotjawalensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	0.94 %
Methyloceanibacter marginalis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	0.94 %
Methylotuvimicrobium kenyense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylotuvimicrobium → Methylotuvimicrobium kenyense	0.94 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.40 %
Sandaracinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → Sandaracinus	0.94 %
Variibacter gotjawalensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	0.94 %
Methyloceanibacter marginalis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	0.94 %
Methylotuvimicrobium kenyense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylotuvimicrobium → Methylotuvimicrobium kenyense	0.94 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.40 %
Sandaracinus amylolyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → Sandaracinus → Sandaracinus amylolyticus	0.94 %
Variibacter gotjawalensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	0.94 %
Methyloceanibacter marginalis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	0.94 %
Methylotuvimicrobium kenyense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylotuvimicrobium → Methylotuvimicrobium kenyense	0.94 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c0947404	Not Available	549	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105437824	Not Available	560	Open in IMG/M
3300000890\|JGI11643J12802_11324329	All Organisms → cellular organisms → Bacteria → Proteobacteria	1690	Open in IMG/M
3300000956\|JGI10216J12902_110268756	Not Available	611	Open in IMG/M
3300003152\|Ga0052254_1145252	Not Available	618	Open in IMG/M
3300004114\|Ga0062593_102972533	Not Available	542	Open in IMG/M
3300004156\|Ga0062589_100375454	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
3300004479\|Ga0062595_101768362	All Organisms → cellular organisms → Bacteria → Proteobacteria	585	Open in IMG/M
3300004481\|Ga0069718_15411314	All Organisms → cellular organisms → Bacteria → Proteobacteria	917	Open in IMG/M
3300005331\|Ga0070670_102259749	All Organisms → cellular organisms → Bacteria → Proteobacteria	501	Open in IMG/M
3300005332\|Ga0066388_100098985	All Organisms → cellular organisms → Bacteria → Proteobacteria	3373	Open in IMG/M
3300005338\|Ga0068868_100719964	Not Available	894	Open in IMG/M
3300005434\|Ga0070709_11276566	All Organisms → cellular organisms → Bacteria → Proteobacteria	592	Open in IMG/M
3300005440\|Ga0070705_101907290	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300005536\|Ga0070697_101273503	All Organisms → cellular organisms → Bacteria → Proteobacteria	656	Open in IMG/M
3300005713\|Ga0066905_100581050	Not Available	945	Open in IMG/M
3300005719\|Ga0068861_101938983	Not Available	587	Open in IMG/M
3300005840\|Ga0068870_10750102	Not Available	678	Open in IMG/M
3300005844\|Ga0068862_100593360	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300006041\|Ga0075023_100155742	All Organisms → cellular organisms → Bacteria → Proteobacteria	846	Open in IMG/M
3300006052\|Ga0075029_100454745	All Organisms → cellular organisms → Bacteria → Proteobacteria	840	Open in IMG/M
3300006102\|Ga0075015_100180234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1115	Open in IMG/M
3300006163\|Ga0070715_10192947	All Organisms → cellular organisms → Bacteria → Proteobacteria	1029	Open in IMG/M
3300006174\|Ga0075014_100022610	All Organisms → cellular organisms → Bacteria → Proteobacteria	2435	Open in IMG/M
3300006635\|Ga0075526_1001398	All Organisms → cellular organisms → Bacteria	1682	Open in IMG/M
3300006845\|Ga0075421_102260181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylotuvimicrobium → Methylotuvimicrobium kenyense	572	Open in IMG/M
3300006854\|Ga0075425_102996238	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300007076\|Ga0075435_101589709	Not Available	574	Open in IMG/M
3300009092\|Ga0105250_10212257	All Organisms → cellular organisms → Bacteria → Terrabacteria group	819	Open in IMG/M
3300009098\|Ga0105245_11003794	Not Available	879	Open in IMG/M
3300009100\|Ga0075418_11078266	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300009156\|Ga0111538_10394422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1753	Open in IMG/M
3300009162\|Ga0075423_12598193	Not Available	553	Open in IMG/M
3300009820\|Ga0105085_1088856	Not Available	594	Open in IMG/M
3300010373\|Ga0134128_12636316	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300010375\|Ga0105239_13099086	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300010399\|Ga0134127_13277898	Not Available	529	Open in IMG/M
3300010400\|Ga0134122_12460316	Not Available	569	Open in IMG/M
3300012204\|Ga0137374_10145449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2128	Open in IMG/M
3300012491\|Ga0157329_1018740	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300012910\|Ga0157308_10287576	Not Available	596	Open in IMG/M
3300012912\|Ga0157306_10004502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2536	Open in IMG/M
3300012912\|Ga0157306_10181129	Not Available	693	Open in IMG/M
3300012913\|Ga0157298_10354669	Not Available	541	Open in IMG/M
3300012955\|Ga0164298_10971656	Not Available	625	Open in IMG/M
3300012960\|Ga0164301_11026209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	650	Open in IMG/M
3300012984\|Ga0164309_10983430	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300012984\|Ga0164309_11477131	Not Available	581	Open in IMG/M
3300012987\|Ga0164307_11648561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	543	Open in IMG/M
3300012989\|Ga0164305_10296306	All Organisms → cellular organisms → Bacteria	1193	Open in IMG/M
3300012989\|Ga0164305_10532154	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300013306\|Ga0163162_11704317	Not Available	720	Open in IMG/M
3300013308\|Ga0157375_12389882	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300014325\|Ga0163163_13302868	Not Available	503	Open in IMG/M
3300015372\|Ga0132256_100117613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2618	Open in IMG/M
3300016357\|Ga0182032_11713358	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300017947\|Ga0187785_10762696	Not Available	512	Open in IMG/M
3300018029\|Ga0187787_10041237	All Organisms → cellular organisms → Bacteria → Proteobacteria	1329	Open in IMG/M
3300018076\|Ga0184609_10291576	Not Available	763	Open in IMG/M
3300018469\|Ga0190270_13328722	Not Available	510	Open in IMG/M
3300018481\|Ga0190271_11133896	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300022883\|Ga0247786_1054896	Not Available	812	Open in IMG/M
3300023266\|Ga0247789_1078626	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300025313\|Ga0209431_11229497	Not Available	510	Open in IMG/M
3300025315\|Ga0207697_10376452	Not Available	630	Open in IMG/M
3300025321\|Ga0207656_10160744	Not Available	1069	Open in IMG/M
3300025325\|Ga0209341_10287379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1357	Open in IMG/M
3300025912\|Ga0207707_10951188	Not Available	707	Open in IMG/M
3300025916\|Ga0207663_11010849	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300025922\|Ga0207646_10648841	Not Available	946	Open in IMG/M
3300025925\|Ga0207650_11346984	All Organisms → cellular organisms → Bacteria → Terrabacteria group	607	Open in IMG/M
3300025931\|Ga0207644_11467934	Not Available	573	Open in IMG/M
3300025934\|Ga0207686_10631834	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300025936\|Ga0207670_10476497	Not Available	1010	Open in IMG/M
3300025937\|Ga0207669_10741696	Not Available	810	Open in IMG/M
3300025938\|Ga0207704_11162335	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300025940\|Ga0207691_11247065	Not Available	615	Open in IMG/M
3300025972\|Ga0207668_10259145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1416	Open in IMG/M
3300025981\|Ga0207640_11522435	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → Sandaracinus → Sandaracinus amylolyticus	601	Open in IMG/M
3300026089\|Ga0207648_11033871	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300026095\|Ga0207676_10321455	All Organisms → cellular organisms → Bacteria	1421	Open in IMG/M
3300026494\|Ga0257159_1080404	Not Available	565	Open in IMG/M
3300026498\|Ga0257156_1019396	All Organisms → cellular organisms → Bacteria	1344	Open in IMG/M
3300027604\|Ga0208324_1127904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	700	Open in IMG/M
3300027880\|Ga0209481_10735698	Not Available	513	Open in IMG/M
3300027956\|Ga0209820_1195902	Not Available	563	Open in IMG/M
3300028380\|Ga0268265_10362833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1327	Open in IMG/M
3300028597\|Ga0247820_10566719	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300028809\|Ga0247824_10331915	Not Available	863	Open in IMG/M
3300030006\|Ga0299907_11307156	Not Available	515	Open in IMG/M
3300030619\|Ga0268386_10718815	Not Available	649	Open in IMG/M
3300031562\|Ga0310886_10856356	Not Available	575	Open in IMG/M
3300031563\|Ga0307436_1123194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	726	Open in IMG/M
3300031640\|Ga0318555_10674239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	559	Open in IMG/M
3300031699\|Ga0315535_1118555	Not Available	973	Open in IMG/M
3300031719\|Ga0306917_10488167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	967	Open in IMG/M
3300031847\|Ga0310907_10130628	All Organisms → cellular organisms → Bacteria	1128	Open in IMG/M
3300031854\|Ga0310904_11002902	Not Available	595	Open in IMG/M
3300031943\|Ga0310885_10163417	All Organisms → cellular organisms → Bacteria	1075	Open in IMG/M
3300031947\|Ga0310909_10294095	All Organisms → cellular organisms → Bacteria	1360	Open in IMG/M
3300031949\|Ga0214473_10128516	All Organisms → cellular organisms → Bacteria	2955	Open in IMG/M
3300032003\|Ga0310897_10238332	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300032012\|Ga0310902_10997233	Not Available	581	Open in IMG/M
3300032075\|Ga0310890_11522422	All Organisms → cellular organisms → Bacteria → Terrabacteria group	552	Open in IMG/M
3300033289\|Ga0310914_11682053	Not Available	538	Open in IMG/M
3300034085\|Ga0373908_132186	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.92%
Host-Associated	Host-Associated	31.13%
Engineered	Engineered	0.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	58.49%
Plants	Host-Associated → Plants	31.13%
Aquatic	Environmental → Aquatic	9.43%
Bioremediation	Engineered → Bioremediation	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.49%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.26%
Sediment	Environmental → Aquatic → Sediment	4.72%
Freshwater	Environmental → Aquatic → Freshwater	2.83%
Marine	Environmental → Aquatic → Marine	1.89%
Roots	Host-Associated → Plants → Roots	0.94%
Metal	Engineered → Bioremediation → Metal	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.34%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.26%
Loam	Environmental → Terrestrial → Soil → Loam	11.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.32%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.72%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.89%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.89%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.94%
Sand	Environmental → Terrestrial → Soil → Sand	0.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.32%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	8.49%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.55%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.72%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.72%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.77%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.89%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	1.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.89%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	1.89%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.94%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.94%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.94%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.94%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.94%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	8.49%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.72%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.77%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.89%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.89%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.94%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Sediment	0.94%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.94%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	0.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.94%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.94%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.94%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003152	Freshwater sediment microbial communities from Loktak Lake, India	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006635	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-three	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012491	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.8.old.040610	Host-Associated	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300018029	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300023266	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025325	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027956	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031563	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-40	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031699	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034085	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B3A4.3	Engineered	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_09474041	2228664022	Soil	MADSELEILREALREHVNALAVEIGPRTPSDPNSLVRAA
INPhiseqgaiiFebDRAFT_1054378243	3300000364	Soil	MADSELEILREALREHVNALAVEIGPRTPSDPNSLVRAANYIH
JGI11643J12802_113243292	3300000890	Soil	LADRELDILRDTLREHVGALTVDIGPRTPSTSNSLLRAANYIHSVFENAG
JGI10216J12902_1102687561	3300000956	Soil	LADRELELVRDALREHVNALAVDIGPRTPLNDDSLVRTANYI
Ga0052254_11452521	3300003152	Sediment	LADRELQVLKDALREHVNALAVDIGPRTPSSPDSLVRAANYIHSALEEAGL
Ga0062593_1029725331	3300004114	Soil	MADSELEILREALREHVNALAVDIGPRTSSDPNSLVRAANYIHSVF
Ga0062589_1003754541	3300004156	Soil	VGGRDLETIRDSLREHVNALAVDIGPRTPLNDNSLVRAANYIHSVFEDAGLSVTEQA
Ga0062595_1017683621	3300004479	Soil	VYSELYALQNTLREHVHAFAVDIGPRTLFNPSSLARAANYIRSVLECAGLSVSEQNYEYYGQQ
Ga0069718_154113141	3300004481	Sediment	LANRELDILGDALREHVNALAVDIGPRTPSIPDSLVRAANYIHSVFE
Ga0070670_1022597491	3300005331	Switchgrass Rhizosphere	LANRELDILGDALREHVNALAVDIGPRTPSIPDSLVRAANYIHS
Ga0066388_1000989853	3300005332	Tropical Forest Soil	LADRELKGLQAVLREHVDALAVHIGSRTPSKHGISVRAGNYVHSVFKDAGLSVREQNYQ*
Ga0068868_1007199641	3300005338	Miscanthus Rhizosphere	LIDNELEILRDALREHVSALAIDIGPRTTVDGNSLVLAADYIHSVFEEAGLSVTRQDYQY
Ga0070709_112765661	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LGLTAKSELEILREALREHVNALAVDVGPRAPSIPDSLVRAANYIHSVFEDAGLSVKEQNYKYHDQRVTNVLATAPGDTSASTY
Ga0070705_1019072901	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	VGGRDLETIRDSLREHVNALAVDIGPRTPLNDNSLVRAANYIHSVFEDAGLSVTEQAYQILCPVGDE
Ga0070697_1012735032	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	LANRELDILRDALREHVNALAVDIGPRTPSIPDSLVRAANYIHSVFEDAG
Ga0066905_1005810501	3300005713	Tropical Forest Soil	LADRELDILRDALREHVKALAADIGPRTPSNPDSLV
Ga0068861_1019389831	3300005719	Switchgrass Rhizosphere	VGGRDLETIRDSLREHVNALAVDIGPRTPLNDNSLVRA
Ga0068870_107501021	3300005840	Miscanthus Rhizosphere	LANRELDILGDALREHVNALAVDIGPRTPSLPDSLVRAANYIHSVFEDAGLTVSEED
Ga0068862_1005933601	3300005844	Switchgrass Rhizosphere	LANRELDILRDALRGHVNALAVDIGPRTPSIPDSLVR
Ga0075023_1001557422	3300006041	Watersheds	MANSELEILRQALQEHVHALAVDIGPRTPSIPDNLVRAANYIHSVLEDAGLS
Ga0075029_1004547452	3300006052	Watersheds	MANSELEILRQVLQEHVHALAVDIGPRTPSIPDSLVRAANYIHSVFEDAGLSVRGQM*
Ga0075015_1001802341	3300006102	Watersheds	LADRELEILRDTLREHVGALAADIGPRTPSSPDSLVRAANYIHSV
Ga0070715_101929471	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	LGDRELEILQDALREHVNALAVDIGPRTPSIPDSLVRAANYIHSVFEDAGLTVSEQ
Ga0075014_1000226102	3300006174	Watersheds	MANSELEILRQALQEHVHALAVDIGPRTPSIPDSLVRAANYIHSVFEDAGLSVRGQM*
Ga0075526_10013981	3300006635	Arctic Peat Soil	LADRELEILRDALREHVNALAVDIGPRSPLNGDSLVRAANYIRSVLEQAGLSVREQDYQY
Ga0075421_1022601811	3300006845	Populus Rhizosphere	LIDRDLEILREALREHVSALAIDIGPRTPVNGNSLVIAANYIHSVFEDAGLSVTRQDYQYYGQRVTNVLGTLPVDT
Ga0075425_1029962382	3300006854	Populus Rhizosphere	LINNELEILRDALREHVSALAIDIGPRTTVNGNSLVLAADYI
Ga0075435_1015897091	3300007076	Populus Rhizosphere	LADHELELVRDALREHVNALAVDIGPRTPLNDDSLVRTAN
Ga0105250_102122572	3300009092	Switchgrass Rhizosphere	LADRELETLRDALREHVNALAVDIGPRAPLDPNSLVRAADYIHSVFEDAGLSVRE
Ga0105245_110037942	3300009098	Miscanthus Rhizosphere	LANRELDILRDALHEHVNALAVDIGPRAPSIPDSLVRAANYIH
Ga0075418_110782661	3300009100	Populus Rhizosphere	LANRELDILSDALREHVNALAVDIGPRTPSIPDSLVRAANYIHL
Ga0111538_103944223	3300009156	Populus Rhizosphere	LIDRDLEILREALREHVSALAIDIGPRTPVNGNNLVIAANYIHSVFEDAGLSVTRQDYQYYGQRVT
Ga0075423_125981931	3300009162	Populus Rhizosphere	LIDRDLEILREALREHVSALAIDIGPRTPVNGNSLVIAANYIHSVFENAGLSVTRQDYQYYGQRVT
Ga0105085_10888561	3300009820	Groundwater Sand	LADRELEILRNALREHVNALAVDIGPRTPLNRDSLVRAANYIHSVFEEAGLSVREQD
Ga0134128_126363162	3300010373	Terrestrial Soil	LADRELEILRDALREHVSALAVDIGPRTPSLPDSLVRAANYIHSVFEDAGLSV
Ga0105239_130990861	3300010375	Corn Rhizosphere	LADRELEILRDALREHVSALAVDIGPRTPSVPDSLVRAANYIHS
Ga0134127_132778981	3300010399	Terrestrial Soil	LANRELDILSDALREHVNALAVDIGPRTPSIPDSLVRAANYIHS
Ga0134122_124603162	3300010400	Terrestrial Soil	LADRELETLRNALREHVNALAVDIGPRTPLDPNSLVRAADYIHSVFE
Ga0137374_101454491	3300012204	Vadose Zone Soil	LAYRELEILRDALREHVNALAVDIGPRTPSSPDSLVRAANYIHSVFEDAGLSV
Ga0157329_10187402	3300012491	Arabidopsis Rhizosphere	LADRELEILRDALREHVSALAVDIGPRTPSSPDSLVRAANYIHSVFE
Ga0157308_102875761	3300012910	Soil	MADSELEILREALREHVNALAVDIGPRTSSDLNSYIHSVFE
Ga0157306_100045026	3300012912	Soil	LIDNELEILRDALREHVSALAIDIGPRTTVNGNSLVLAADYIHSVFEE
Ga0157306_101811292	3300012912	Soil	LADRELETLRNALREHVNALAVDIGPRTPLDPNSLVRAADYIHSVFEDAGLSVRE
Ga0157298_103546691	3300012913	Soil	LADREPETLRNALREHVNALAVDIGPRTPLDPNSLVRAADYIHSVFEDAGLSVREQ
Ga0164298_109716561	3300012955	Soil	LANRELDILRDALHEHISPLAVDIDPRAPSIPDSLVRAANYIHSVFEDAGLTVSEQNYDCYNQRVTNLLGTVPASA
Ga0164301_110262092	3300012960	Soil	MPRPLLERSELDILRDALREHINALAVDIGPRTPSSPGSLVRAANYIHSVFEDAGLSVR
Ga0164309_109834302	3300012984	Soil	LANRELDILRDALREHVNALAVDIGPRTPSIPDSLVRAANYIHSVFEEAGLTVCEQDYDYYDQ
Ga0164309_114771311	3300012984	Soil	LVNRELDILRDALREHVSALAVDIGPRTPVDGNNLVRAANYIHSIFEE
Ga0164307_116485611	3300012987	Soil	MADRELETLREALREHVNALAVDIGPRTPSDPNSLARAANYVHSVFEDAGFS
Ga0164305_102963062	3300012989	Soil	LADRELEILRDALREHVSALAVDIGPRTPSVPDSLVRAANYIHSVFEDAGLSVREQNYQY
Ga0164305_105321541	3300012989	Soil	LFDREPDILRGALREHVKALAVDIGPRTLSNPGSL
Ga0163162_117043171	3300013306	Switchgrass Rhizosphere	LAGRELDILRDALREHVKALAVDIGPRTPSTPDSLVRAANYITSVFEDAGLS
Ga0157375_123898822	3300013308	Miscanthus Rhizosphere	LANRELDILRDALREHVNALAVDIGPRTPSIPDSLVRAANYIQSVFEDAGLTVSEQDYDY
Ga0163163_133028682	3300014325	Switchgrass Rhizosphere	LADHELELVRDALREHVNALAVDIGPRTPLNDDSLVRTANYIHSVFEE
Ga0132256_1001176135	3300015372	Arabidopsis Rhizosphere	LANRELDILRDALREHVNALAVDIGPRTASIPDSLVRAANY
Ga0182032_117133581	3300016357	Soil	MPRTKLGPGELDILRDALYEHVKALAVDIGPRTPMSPGSLVRAANYIHSVFEDAG
Ga0187785_107626962	3300017947	Tropical Peatland	VADREIEVLRELLREHVNALAVDIGPRTPLNADSLVRAAK
Ga0187787_100412371	3300018029	Tropical Peatland	MANSELEILREALREHVNALAVDIGPRTTSIPGSLVRAANYIHSVFEDAGLAIREQNYQYRDQRV
Ga0184609_102915761	3300018076	Groundwater Sediment	LADRELDILRDALHEHVNALAVDIGPRAPSIPDSLVRAANYIHSVFEDAG
Ga0190270_133287222	3300018469	Soil	LTHRERAILRDALREHVKALAIDIGPRTPLNGDSLVRAANYIHSVFEEAGLPVRE
Ga0190271_111338962	3300018481	Soil	LANRELDILRDALREHVNALAVDIGPRTPSIPDSLVRAANYIHSVFEDAGLTVSEQ
Ga0247786_10548961	3300022883	Soil	VADRELETLRDSLREHVNALAVDIGPRTPLQRDSLVHAANYIYSVFEES
Ga0247789_10786262	3300023266	Soil	LIDNELEILRAALREHVSALAIDIGPRTTVDGNSLVL
Ga0209431_112294972	3300025313	Soil	LADSELEILRDALREHVKALAVDIGSRTPLNRDSLVRAADYIQSVFEEAGLSVREQDYQY
Ga0207697_103764521	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	LIDNELEILRDALREHVSALAIDIGPRTTVDGNSLVLAADYIHSVFEEAGLSVTRQDYQYYD
Ga0207656_101607442	3300025321	Corn Rhizosphere	LIDNELEILRDALREHVSALAIDIGPRTTVDGNSLVLAADYIHSV
Ga0209341_102873791	3300025325	Soil	LADREIKIVRDSLRGHVKALAVDIGPRTPFTGDSL
Ga0207707_109511882	3300025912	Corn Rhizosphere	LIDNELEILRDALREHVSALAIDIGPRTTVDGNSLVLAADYIHSVFEEAGLS
Ga0207663_110108491	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	LGDRELEILQDALREHVNALAVDIGPRTPSIPDSLVRAANYIHSVFEDAG
Ga0207646_106488412	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	LIDNELEILRAALREHVSALAIDIGPRTTVDGNSLVLAADYIHSVF
Ga0207650_113469841	3300025925	Switchgrass Rhizosphere	LADRELETLRNALREHVNALAVDIGPRTALDPNSLVRAADYIHSV
Ga0207644_114679341	3300025931	Switchgrass Rhizosphere	LADRELETLRNALREHVNALAVDIGPRTPLDPNSLVRAADYIHSVFEDA
Ga0207686_106318342	3300025934	Miscanthus Rhizosphere	LANRELDILRDALREHVNALAVDIGSRTPSIPDSLVRAGNYIHSVFEDAGLSV
Ga0207670_104764972	3300025936	Switchgrass Rhizosphere	LIDNELEILRDALREHVSALAIDIGPRTTVDGNSLVLAADYIHSVFEEAGLSVTRQDYQYYDHRVTNV
Ga0207669_107416962	3300025937	Miscanthus Rhizosphere	LRDHELEILREALREHVNALAVDIGPRTPLTSDSLVRTQ
Ga0207704_111623352	3300025938	Miscanthus Rhizosphere	LIDNELEILRAALREHVSALAIDIGPRTTVDGNSLVLAADYIHSVFEEAGLS
Ga0207691_112470652	3300025940	Miscanthus Rhizosphere	VGGRDLETIRDSLREHVNALAVDIGPRTPLNDNSLVRAANYIHSV
Ga0207668_102591451	3300025972	Switchgrass Rhizosphere	LANRELDILRDALREHVNALAVDIGPRTPSIPDSLVRAAN
Ga0207640_115224352	3300025981	Corn Rhizosphere	LANRELDILRDALHEHVNALAVDIGPRAPSIPDSLVRAANYIHSVFEDAGLTVSEQNYDCYNQRVTNLLGTV
Ga0207648_110338711	3300026089	Miscanthus Rhizosphere	LANRELDILRDALREHVNALAVDIGPRTPSIPDSLVRAANYIHSVFEDAGLTVS
Ga0207676_103214552	3300026095	Switchgrass Rhizosphere	LADRELETLRNALREHVNALAVDIGPRTPLDPNSLVRAADYIHSVFEDAGLSVREQTTNIMISA
Ga0257159_10804041	3300026494	Soil	MPRTLFGQSELDILPDALREHVNAFAVDIGPRTPSSPGSLVRAANYIHSVFEDAGLSVREQDYEYYASA
Ga0257156_10193961	3300026498	Soil	LVNRELDILRDALREHVSALAVDIGPRTPVDGNNLVRAANYIHSIFEEAGLSVREQDYQY
Ga0208324_11279041	3300027604	Peatlands Soil	LADRELEILGDALREHVNALAVDIGPRTPSIPDSLVRAANYIHSVFEDVGLSV
Ga0209481_107356981	3300027880	Populus Rhizosphere	MPGRLSLALGPQGPLVKRDLEILPDALREHVNALAVDIGPRTPLNSDSLVRAANYIRSVFEEAGLSVREQD
Ga0209820_11959023	3300027956	Freshwater Sediment	LDDRELEILRAALHEHVNALAVDIGPRTPLNSDSLVRAANYIRSVFEEAGLSV
Ga0268265_103628333	3300028380	Switchgrass Rhizosphere	LANRELDILRDALREHVNALAVDIGPRTPSIPDSLVRAANYIH
Ga0247820_105667191	3300028597	Soil	LANRELDILRDALREHVNALAVDIGPRTPSIPDSLVRAANYIHSVFEDAGLTVCEQDYDYYYQRVTNLLGTVPA
Ga0247824_103319151	3300028809	Soil	LANRELDILRDALREHVNALAVDIGPRAPSIPDSLVRAANYIHSVFEDAGLIVSEQNYDCYN
Ga0299907_113071562	3300030006	Soil	LGDRELENLRGALRGHVKALASDIGPRTPFIGDSLTRA
Ga0268386_107188152	3300030619	Soil	LAHREREILRDALREHVKALAVDIGPRTPLNGDSLVRAANYIHSVFD
Ga0310886_108563561	3300031562	Soil	LIDNELEILRDALREHVSALAIDIGPRTTVNGNSLVLAADYIHSVFEEAGLSVTRQDYQYYDHRVTNVLGTL
Ga0307436_11231942	3300031563	Salt Marsh	LGDGELEIVRNALRAHVEALAVDIGPRTPFSTNSLERAAT
Ga0318555_106742391	3300031640	Soil	LAKRELEILRTALREHVNALTVDIGSRTPLNGNSLVRAANYIHSVFEEASLSVREQDYAY
Ga0315535_11185551	3300031699	Salt Marsh Sediment	VDRELEILRDALHEHVNALAVDIGPRSPSDPNALVRAANYVHSVFEDAGLS
Ga0306917_104881673	3300031719	Soil	LADNELKVLRDALGEHVNALAVDIGPRTPASPDTLVRAGNYLHSVFEDAGLSVTEQDYQYYDQRV
Ga0310907_101306281	3300031847	Soil	LANRELDILRDALREHVNALAVDIGPRTPSIPDSLVRAA
Ga0310904_110029021	3300031854	Soil	LADRELETLRNALREHVNALAVDIGPRTPLDPNSLVRAADYI
Ga0310885_101634172	3300031943	Soil	LVNRELDILRDALREHVNALAVDIGPRTPSIPDSLVRAANYIHSVFEDAGLTV
Ga0310909_102940951	3300031947	Soil	MPRTKPGPSELDILRDALYEHVKALAVDIGPRTPTSPGSLVRAANYIH
Ga0214473_101285161	3300031949	Soil	MADSEVEILRDALREHVKALAVDIESRTPSNRDSLVRAANYIHS
Ga0310897_102383322	3300032003	Soil	LIDNELEILRDALREHVSALAIDIGPRTTVDGNSLVLAADYIHSVFEEAGLSV
Ga0310902_109972331	3300032012	Soil	LIDNELEILRDALREHVSALAIDIGPRTPVNGNSLVLAADYIHSVFEEAGLSVTRQD
Ga0310890_115224221	3300032075	Soil	LADRELETLRNALREHVNALAVDIGPRTPLDPNSLVRAA
Ga0310914_116820531	3300033289	Soil	MPRTKPGPSELDILRDALYEHVKALAVDIGPRTPTSPGSLVRAANYIHSVFEDAGLSVREQNYHYDDQRVR
Ga0373908_132186_3_188	3300034085	Sediment Slurry	MANRELDILRDALREHVNALAVDIGPRTPSIPDSLVRAANYIHSVFEDAGLTVSEQDYDYYD

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F094479

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


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