NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F094601

Metagenome Family F094601

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F094601
Family Type Metagenome
Number of Sequences 106
Average Sequence Length 58 residues
Representative Sequence LEVVAVYYRQRFCLLTLAEFGRILLDIAEPVRGKLREKLRRIEREQYSLLETARSP
Number of Associated Samples 94
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 7.62 %
% of genes near scaffold ends (potentially truncated) 85.85 %
% of genes from short scaffolds (< 2000 bps) 91.51 %
Associated GOLD sequencing projects 91
AlphaFold2 3D model prediction Yes
3D model pTM-score0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (88.679 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment
(26.415 % of family members)
Environment Ontology (ENVO) Unclassified
(29.245 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(34.906 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 58.33%    β-sheet: 0.00%    Coil/Unstructured: 41.67%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.51
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF13619KTSC 16.04
PF01609DDE_Tnp_1 3.77
PF13620CarboxypepD_reg 2.83
PF02604PhdYeFM_antitox 1.89
PF00076RRM_1 1.89
PF00078RVT_1 1.89
PF02652Lactate_perm 0.94
PF09339HTH_IclR 0.94
PF13701DDE_Tnp_1_4 0.94
PF05163DinB 0.94
PF07676PD40 0.94
PF13439Glyco_transf_4 0.94
PF05598DUF772 0.94
PF03235DUF262 0.94
PF13683rve_3 0.94
PF00528BPD_transp_1 0.94
PF03050DDE_Tnp_IS66 0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 106 Family Scaffolds
COG3039Transposase and inactivated derivatives, IS5 familyMobilome: prophages, transposons [X] 3.77
COG3293TransposaseMobilome: prophages, transposons [X] 3.77
COG3385IS4 transposase InsGMobilome: prophages, transposons [X] 3.77
COG5421TransposaseMobilome: prophages, transposons [X] 3.77
COG5433Predicted transposase YbfD/YdcC associated with H repeatsMobilome: prophages, transposons [X] 3.77
COG5659SRSO17 transposaseMobilome: prophages, transposons [X] 3.77
COG4118Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressorDefense mechanisms [V] 1.89
COG2161Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM familyDefense mechanisms [V] 1.89
COG2318Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)Secondary metabolites biosynthesis, transport and catabolism [Q] 0.94
COG3436TransposaseMobilome: prophages, transposons [X] 0.94
COG1479DNAse/DNA nickase specific for phosphorothioated or glycosylated phage DNA, GmrSD/DndB/SspE family, contains DUF262 and HNH nuclease domainsDefense mechanisms [V] 0.94
COG1620L-lactate permeaseEnergy production and conversion [C] 0.94

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms88.68 %
UnclassifiedrootN/A11.32 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2140918024|NODE_251580_length_1335_cov_7.466667All Organisms → cellular organisms → Bacteria1385Open in IMG/M
3300004091|Ga0062387_100478643All Organisms → cellular organisms → Bacteria863Open in IMG/M
3300004282|Ga0066599_101176094All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium571Open in IMG/M
3300005541|Ga0070733_10822945All Organisms → cellular organisms → Bacteria624Open in IMG/M
3300005561|Ga0066699_10126621All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.1718Open in IMG/M
3300005568|Ga0066703_10288133All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium995Open in IMG/M
3300006059|Ga0075017_100915529Not Available681Open in IMG/M
3300006640|Ga0075527_10248077All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300006642|Ga0075521_10612856All Organisms → cellular organisms → Bacteria536Open in IMG/M
3300006852|Ga0075433_11204190Not Available657Open in IMG/M
3300006854|Ga0075425_101373732All Organisms → cellular organisms → Bacteria800Open in IMG/M
3300006865|Ga0073934_10690762All Organisms → cellular organisms → Bacteria589Open in IMG/M
3300006949|Ga0075528_10206486All Organisms → cellular organisms → Bacteria533Open in IMG/M
3300009039|Ga0105152_10500167All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300009085|Ga0105103_10878918All Organisms → cellular organisms → Bacteria524Open in IMG/M
3300009137|Ga0066709_104266162All Organisms → cellular organisms → Bacteria521Open in IMG/M
3300009143|Ga0099792_11099563All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium535Open in IMG/M
3300009444|Ga0114945_10838511All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium565Open in IMG/M
3300009632|Ga0116102_1065818Not Available1099Open in IMG/M
3300009640|Ga0116126_1172909All Organisms → cellular organisms → Bacteria710Open in IMG/M
3300010333|Ga0134080_10626054Not Available526Open in IMG/M
3300010343|Ga0074044_10438137All Organisms → cellular organisms → Bacteria855Open in IMG/M
3300010379|Ga0136449_101460543All Organisms → cellular organisms → Bacteria → Acidobacteria1050Open in IMG/M
3300011269|Ga0137392_10300117All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1328Open in IMG/M
3300011999|Ga0120148_1011851All Organisms → cellular organisms → Bacteria2112Open in IMG/M
3300012198|Ga0137364_11461411All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium504Open in IMG/M
3300012206|Ga0137380_11322805All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium605Open in IMG/M
3300012211|Ga0137377_11484618All Organisms → cellular organisms → Bacteria604Open in IMG/M
3300012358|Ga0137368_10611299All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium692Open in IMG/M
3300012360|Ga0137375_10578807All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4939Open in IMG/M
3300012927|Ga0137416_11584030All Organisms → cellular organisms → Bacteria → Acidobacteria596Open in IMG/M
3300012931|Ga0153915_13270289All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300012964|Ga0153916_13106322All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300012971|Ga0126369_10315092All Organisms → cellular organisms → Bacteria1571Open in IMG/M
(restricted) 3300013128|Ga0172366_10897256All Organisms → cellular organisms → Bacteria513Open in IMG/M
(restricted) 3300013130|Ga0172363_10672785All Organisms → cellular organisms → Bacteria650Open in IMG/M
3300014056|Ga0120125_1154054Not Available560Open in IMG/M
3300014162|Ga0181538_10363199All Organisms → cellular organisms → Bacteria776Open in IMG/M
3300014502|Ga0182021_13036953All Organisms → cellular organisms → Bacteria562Open in IMG/M
3300014502|Ga0182021_13533417All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300015242|Ga0137412_11229074All Organisms → cellular organisms → Bacteria525Open in IMG/M
3300015357|Ga0134072_10380062All Organisms → cellular organisms → Bacteria551Open in IMG/M
3300017925|Ga0187856_1026990All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2800Open in IMG/M
3300017966|Ga0187776_11379619Not Available536Open in IMG/M
3300018006|Ga0187804_10452364All Organisms → cellular organisms → Bacteria573Open in IMG/M
3300018006|Ga0187804_10562499All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300018038|Ga0187855_10256974All Organisms → cellular organisms → Bacteria1024Open in IMG/M
3300018084|Ga0184629_10610059All Organisms → cellular organisms → Bacteria556Open in IMG/M
3300019788|Ga0182028_1477260All Organisms → cellular organisms → Bacteria1930Open in IMG/M
3300020074|Ga0194113_10604070All Organisms → cellular organisms → Bacteria773Open in IMG/M
3300021476|Ga0187846_10364318All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300022563|Ga0212128_10962601All Organisms → cellular organisms → Bacteria501Open in IMG/M
3300024271|Ga0224564_1090155All Organisms → cellular organisms → Bacteria619Open in IMG/M
3300025619|Ga0207926_1066293Not Available949Open in IMG/M
3300025843|Ga0209182_10236658All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium513Open in IMG/M
3300026529|Ga0209806_1151921All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium881Open in IMG/M
3300026547|Ga0209156_10001375All Organisms → cellular organisms → Bacteria19869Open in IMG/M
3300026547|Ga0209156_10091734All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1523Open in IMG/M
3300026551|Ga0209648_10634898Not Available585Open in IMG/M
3300027678|Ga0209011_1214077All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300027696|Ga0208696_1251067All Organisms → cellular organisms → Bacteria549Open in IMG/M
3300027735|Ga0209261_10185358All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Treponemataceae → Treponema557Open in IMG/M
(restricted) 3300027799|Ga0233416_10175522All Organisms → cellular organisms → Bacteria735Open in IMG/M
3300027846|Ga0209180_10007831All Organisms → cellular organisms → Bacteria → Acidobacteria5460Open in IMG/M
3300027846|Ga0209180_10669739Not Available567Open in IMG/M
3300027854|Ga0209517_10256325All Organisms → cellular organisms → Bacteria1044Open in IMG/M
3300030000|Ga0311337_11561232All Organisms → cellular organisms → Bacteria579Open in IMG/M
3300031344|Ga0265316_11269304All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300031546|Ga0318538_10605282Not Available594Open in IMG/M
3300031576|Ga0247727_10697576All Organisms → cellular organisms → Bacteria743Open in IMG/M
3300031707|Ga0315291_11069912All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium672Open in IMG/M
3300031768|Ga0318509_10762982All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium536Open in IMG/M
3300031772|Ga0315288_10427423All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1332Open in IMG/M
3300031862|Ga0315280_10071649All Organisms → cellular organisms → Bacteria2699Open in IMG/M
3300031885|Ga0315285_10201984All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium1585Open in IMG/M
3300031885|Ga0315285_10584950All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium744Open in IMG/M
3300031885|Ga0315285_10665072All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium677Open in IMG/M
3300031952|Ga0315294_10877596All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria763Open in IMG/M
3300031997|Ga0315278_10408801All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1401Open in IMG/M
3300031997|Ga0315278_10418064All Organisms → cellular organisms → Bacteria1384Open in IMG/M
3300032046|Ga0315289_10180927All Organisms → cellular organisms → Bacteria2331Open in IMG/M
3300032046|Ga0315289_10293362All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin60761690Open in IMG/M
3300032053|Ga0315284_12286262All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300032069|Ga0315282_10592783All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium602Open in IMG/M
3300032118|Ga0315277_10074983All Organisms → cellular organisms → Bacteria3863Open in IMG/M
3300032118|Ga0315277_10517263All Organisms → cellular organisms → Bacteria1192Open in IMG/M
3300032118|Ga0315277_11020487All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium753Open in IMG/M
3300032118|Ga0315277_11626152All Organisms → cellular organisms → Bacteria546Open in IMG/M
3300032156|Ga0315295_11318210All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium703Open in IMG/M
3300032160|Ga0311301_11682279All Organisms → cellular organisms → Bacteria765Open in IMG/M
3300032163|Ga0315281_11340035Not Available708Open in IMG/M
3300032164|Ga0315283_10756195All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp.1044Open in IMG/M
3300032173|Ga0315268_10102525All Organisms → cellular organisms → Bacteria2698Open in IMG/M
3300032177|Ga0315276_10798719All Organisms → cellular organisms → Bacteria1010Open in IMG/M
3300032342|Ga0315286_12014425All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium536Open in IMG/M
3300032342|Ga0315286_12102948All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300032401|Ga0315275_11573388All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium704Open in IMG/M
3300032892|Ga0335081_12337188All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300033290|Ga0318519_11005866All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium518Open in IMG/M
3300033408|Ga0316605_10978115All Organisms → cellular organisms → Bacteria812Open in IMG/M
3300033416|Ga0316622_102128269All Organisms → cellular organisms → Bacteria651Open in IMG/M
3300033433|Ga0326726_12392944All Organisms → cellular organisms → Bacteria513Open in IMG/M
3300033482|Ga0316627_101485296All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium685Open in IMG/M
3300033557|Ga0316617_102574515All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium529Open in IMG/M
3300034083|Ga0373901_109787All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium583Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment26.42%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil10.38%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.72%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil4.72%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil3.77%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil3.77%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.83%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen2.83%
Lake SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment1.89%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland1.89%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.89%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands1.89%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.89%
Thermal SpringsEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs1.89%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost1.89%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.89%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.89%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.94%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake0.94%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.94%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.94%
Wetland SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment0.94%
FreshwaterEnvironmental → Aquatic → Freshwater → Pond → Sediment → Freshwater0.94%
Hot Spring SedimentEnvironmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment0.94%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.94%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.94%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.94%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Soil0.94%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.94%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.94%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.94%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.94%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.94%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm0.94%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm0.94%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.94%
Sediment SlurryEngineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry0.94%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2140918024Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_allEnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004282Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sedimentEnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006640Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11BEnvironmentalOpen in IMG/M
3300006642Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-DEnvironmentalOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006865Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaGEnvironmentalOpen in IMG/M
3300006949Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16BEnvironmentalOpen in IMG/M
3300009039Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cmEnvironmentalOpen in IMG/M
3300009085Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015EnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009444Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3EnvironmentalOpen in IMG/M
3300009632Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40EnvironmentalOpen in IMG/M
3300009640Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40EnvironmentalOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011999Permafrost microbial communities from Nunavut, Canada - A28_65cm_6MEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012358Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012931Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaGEnvironmentalOpen in IMG/M
3300012964Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012976Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300013128 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 69cmEnvironmentalOpen in IMG/M
3300013130 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2EnvironmentalOpen in IMG/M
3300014056Permafrost microbial communities from Nunavut, Canada - A20_5cm_0MEnvironmentalOpen in IMG/M
3300014162Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaGEnvironmentalOpen in IMG/M
3300014502Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015357Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300017925Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40EnvironmentalOpen in IMG/M
3300017966Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MGEnvironmentalOpen in IMG/M
3300018006Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4EnvironmentalOpen in IMG/M
3300018038Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10EnvironmentalOpen in IMG/M
3300018084Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1EnvironmentalOpen in IMG/M
3300019788Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300020074Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200mEnvironmentalOpen in IMG/M
3300021476Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)EnvironmentalOpen in IMG/M
3300022563OV2_combined assemblyEnvironmentalOpen in IMG/M
3300024271Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5EnvironmentalOpen in IMG/M
3300025619Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025843Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm (SPAdes)EnvironmentalOpen in IMG/M
3300026529Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)EnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300027678Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027696Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027735Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare1Fresh (SPAdes)EnvironmentalOpen in IMG/M
3300027799 (restricted)Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MGEnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027854Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)EnvironmentalOpen in IMG/M
3300030000I_Fen_N3 coassemblyEnvironmentalOpen in IMG/M
3300031344Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaGHost-AssociatedOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031576Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25EnvironmentalOpen in IMG/M
3300031707Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031772Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20EnvironmentalOpen in IMG/M
3300031862Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40EnvironmentalOpen in IMG/M
3300031885Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36EnvironmentalOpen in IMG/M
3300031952Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40EnvironmentalOpen in IMG/M
3300031997Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0EnvironmentalOpen in IMG/M
3300032046Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40EnvironmentalOpen in IMG/M
3300032053Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16EnvironmentalOpen in IMG/M
3300032069Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20EnvironmentalOpen in IMG/M
3300032118Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15EnvironmentalOpen in IMG/M
3300032156Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032163Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0EnvironmentalOpen in IMG/M
3300032164Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0EnvironmentalOpen in IMG/M
3300032173Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_topEnvironmentalOpen in IMG/M
3300032177Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0EnvironmentalOpen in IMG/M
3300032342Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0EnvironmentalOpen in IMG/M
3300032401Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M
3300033408Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCTEnvironmentalOpen in IMG/M
3300033416Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_CEnvironmentalOpen in IMG/M
3300033433Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MNEnvironmentalOpen in IMG/M
3300033482Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_CEnvironmentalOpen in IMG/M
3300033557Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_BEnvironmentalOpen in IMG/M
3300034083Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B1A0.2EngineeredOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
B_all_v_018011402140918024SoilQLLSPSLEVVAVYYRQRFCLLTLAEFGRILLDIPDPARAKLREKLKRIERQQYSLLENTRPP
Ga0062387_10047864313300004091Bog Forest SoilTGGVWERIGQLLSPTLEVVAVYYRQRFCLLTLAEYGRILLDIAEPVRGKLREKLRRIEREQYSLLETARSP*
Ga0066599_10117609413300004282FreshwaterLEVVAVYYRQRFCLLTLAEYGRILLEVAEPVRAKLSDRLREIEREQYSLLENARPP*
Ga0070733_1082294523300005541Surface SoilTLEVVAVYYRQRFCLLTLAEYGRILLDIAEPVRGKLREKLKRIEREQYSLLETARSP*
Ga0066699_1012662113300005561SoilVVAVYYRQRFCLFSIAEFATILLTIADPARGKLLEKINRLEKNLYSLLENARSP*
Ga0066703_1028813313300005568SoilVVAVYYRQRFCLFSLAEFASILLTIADPARGKLLEKINRIKKNLYSLLENARSP*
Ga0075017_10091552913300006059WatershedsYRQRFCLLTLAEFGRILLEIAEPVRGKLREKLRRIEREQYSLLETARSP*
Ga0075527_1024807713300006640Arctic Peat SoilVWEYTRQLLSPSLEVVAVYYRQRFCLLTLAEFGRILLEIPDPARAQLREKLKRIERQQYSLLENARPP*
Ga0075521_1061285613300006642Arctic Peat SoilRQRFCLLTLAEFGRILLDIAEPVRGKLREKLRRIEHEQYSLLETARSP*
Ga0075433_1120419033300006852Populus RhizosphereLEVVAVYYRQRFCLLTLAEFGRILLDIAEPVRGKLREKLRRIEREQYSLLETARSP*
Ga0075425_10137373223300006854Populus RhizosphereLTHGVWERTWRLLSPTLEVVAVYYRQRFCLLTLAEYGRILPDIAEPVRGKLREKLKRIERAQYSLLETARSP*
Ga0073934_1069076213300006865Hot Spring SedimentPSLEMVAVYYRQRFCLFTLAEFGRILLDIADPARGKLRQKLQRIEREQYSLLDNARAP*
Ga0075528_1020648613300006949Arctic Peat SoilYYRQRFCLLTLAEFGRILLDIPDPARAKLREKLKRIERQQYSLLENTRPP*
Ga0105152_1050016713300009039Lake SedimentLEVVAVYYRQRFCLLTLAEYGRILLDIAEPVRGKLRDKLRRIEREQYSLLENAPPPWPRAPNQ*
Ga0105103_1087891813300009085Freshwater SedimentQRFCLLTLAEFGRILLDIAYHVLGKLREKLRRIEREQGSLLETVRAP*
Ga0066709_10426616223300009137Grasslands SoilWQLLSPTLEVVAVYYRQRFCLLTLAEFGRILLDIAEPVRGKLREKFRRIERDQYSLLETARSP*
Ga0099792_1109956313300009143Vadose Zone SoilEVVAVYYRQRFCLLTLAEFGRILLDIAEPVRGKLREKLRRIEREQYTLLENARAP*
Ga0114945_1083851123300009444Thermal SpringsFCLLTLAEYGRILLAIEEPARGKLRETLRRIEREQYSLLDTARAP*
Ga0116102_106581823300009632PeatlandLLSPSLEVVAVYYRQRFCLLTLAEFGRILLDITDPARGKLREKLRRIEREQYSLLETARAP*
Ga0116126_117290923300009640PeatlandNRGVWEYTQRLLSPSLEVVAVYYRQRFCLLTLAEFGRILLDITDPARGKLREKLRRIEREQYSLLEAARAP*
Ga0134080_1062605423300010333Grasslands SoilLTPSLEVVAVYYRQRFCLLTLAEFSRILLDIAEPARSKLREKLKRIEREQYSLLENARSP
Ga0074044_1043813723300010343Bog Forest SoilQLLSPSLEVVAVYYRQRFCLLTLAEFARILLDVAEPVRGKLREKLRRIEREQYSLLETARSP*
Ga0136449_10146054323300010379Peatlands SoilVVAVYYRQRFCLLTLAEFGRILLDITDPARGKLREKLRRIEREQYSLLETARAP*
Ga0137392_1030011723300011269Vadose Zone SoilWQLLSPTLEVVAVYYRQRFCLFSLAEYGRILLDIAEPVRGKLREKLRRIEREQYSLLENARAP*
Ga0120148_101185123300011999PermafrostMSLTHGVWERTWQLLSPTLEVVAVYYRQRFCLLTLAEYGRILLDIAEPVRGKLREKLKRIEREQYSLLETARSP*
Ga0137364_1146141123300012198Vadose Zone SoilVFYRQRFCLLTLAEFGRILLDIAEPARSKLREKLRRIDRQQYSLLENARPP*
Ga0137380_1132280523300012206Vadose Zone SoilAVYYRQRFCLLTLAEFGRILLDVAEPVRGKLREKLRRIEREQYSLLETARAP*
Ga0137377_1148461813300012211Vadose Zone SoilCVWERTRQLLSPSLEVVAVFYRQRFCLLTLAEFGRILLDIAEPARSKLREKLRRIDRQQYSLLENARPP*
Ga0137368_1061129913300012358Vadose Zone SoilGGVWERTWQLLSPTLEVVAVYYRQRFCLLTLAEFGRILLDIAEPVRGKLREKLRRIEREQYSLLETARSP*
Ga0137375_1057880713300012360Vadose Zone SoilTLEVVAVYYRQRFCLLTLAEYGRILLDIAEPVRGKLREKLRRIEHEQYSLLETARSP*
Ga0137416_1158403013300012927Vadose Zone SoilVYYRQRFCLLTLAEFGSILLDIAEPVRGKLREKLRRIEREQYSLLET
Ga0153915_1327028913300012931Freshwater WetlandsPTLEVEAVYYRQRFGPITLAEYGRIPPDVAEPVRGKPRDRLRQIEREQYSLLENARPP*
Ga0153916_1310632213300012964Freshwater WetlandsYRQRFCLLTLAEYGRILLEVAEPVRGKLRDRLRQIEREQYCLLETARSP*
Ga0126369_1031509213300012971Tropical Forest SoilYYRQRFCLLTLAEFGGILLNMAEPGRGKLREKLRRIEREQYSLLETARSP*
Ga0134076_1037404613300012976Grasslands SoilVVAVYYLQRFCLFSIAEFARILLTIADPARGKLLEKINRLEKNLYSLLENARSP*
(restricted) Ga0172366_1089725613300013128SedimentRAWGLLSPALEVVAVYYRQRFCLLTLAEYGRVLLDVAEPVRAKLRDRLRQIEREQYCLLETARPP*
(restricted) Ga0172363_1067278513300013130SedimentLTRGVWERTWKLLSPTLEVVAVYYRQRFCLLTLPEYGRLLLDVAEPFRGKLRDTLRRIDREQYSLLENARPP*
Ga0120125_115405423300014056PermafrostSPALEVVAVYYRQRFCLLTLAEYGRILLDIAEPVRGKLREKLRRIEREQYSLLETARSP*
Ga0181538_1036319913300014162BogRQRFCLLTLAEFARILLDITDPARGKLREKLRRIEREQYSLLETARAP*
Ga0182021_1303695313300014502FenYTRRLLSPSLEVVAVYYRQRFCLLTLAEFGRILLDITDPARGKLREKLRRIEQEQYSLLENARSP*
Ga0182021_1353341713300014502FenRLLSPSLEVVAVYYRQRFCLLTLAEFGRILLDLTDPARGKLREKLRRIEQEQYSLLENARSP*
Ga0137412_1122907413300015242Vadose Zone SoilLLSPTLEVVAVYYRQRFCLLTLAEYGRILLDIAEPVRGKLREKLRRIEHEQYSLLETARSP*
Ga0134072_1038006223300015357Grasslands SoilVYYRQRFCLLTLAEFGRILLDIAEPVRGKLREKLRRIEREQYSLLETARSP*
Ga0187856_102699033300017925PeatlandVAVYYRQRFCLLTLAEFGRILLDITDPARGKLREKLRRIEREQYSLLETARAP
Ga0187776_1137961913300017966Tropical PeatlandTLEVVAVYYRQRFCLLTLAEYGRILLDIAEPVRGKLREKLRRIERELYSLLDTARAP
Ga0187804_1045236413300018006Freshwater SedimentALTGSVWERTWQLLSPTLEVVAVYYRQRFCLLTLAEYSRILLDIAEPVRGKLREKLRRIEREQYSLLETARAP
Ga0187804_1056249913300018006Freshwater SedimentPSLEVVAVYYQQRFCLLTLAEFGRILLDMAEPVRGKLREKLRRIEREQYSLLETARSP
Ga0187855_1025697413300018038PeatlandPSLEVVAVYYRQRFCLLTLAEFGRILLDITDPARGKLREKLRRIEREQYSLLETARAP
Ga0184629_1061005923300018084Groundwater SedimentWERTWQLLSPTLEVVAVYYRQRFCLLTLAEFGRILLDIAEPVRGKLREQLRRIEREHYTLLEAARAP
Ga0182028_147726043300019788FenVCYYQRFYLLTLAEYGRILLDVAEPFRGKLRDRPRQIEPEQYSLLENARPP
Ga0194113_1060407013300020074Freshwater LakeAVYCRQRFCLLTLAEYGRLLLEVDESARGRLRDRLRQIEREQYSLLENARAP
Ga0187846_1036431833300021476BiofilmGQRFCLLTLAEFGRILLDISEPARGKLREKLRHIEREQYSLLETARSP
Ga0212128_1096260113300022563Thermal SpringsVVAVYYRQRFCLLTLAEFGRILLDLREPARGKLREKLRRIEREQCSLLENARSP
Ga0224564_109015513300024271SoilERAWQLLSPTMEVVAVYYRQRFCLLTLAEFGRILLDIEEPMRGKLREKLKHIEREQYSLLENARAP
Ga0207926_106629313300025619Arctic Peat SoilYTQRLLSPSLEVVAVYYRQRFCLLTLAEFGRILLDITDPARGKLREKLRRIEQEQYSLLENARPP
Ga0209182_1023665813300025843Lake SedimentVVAVYYRQRFCLLTLAEYGRILLDIAEPARGKLREQLRRIEREQYSLLENARPP
Ga0209806_115192123300026529SoilPTLQVVAVYYRQRFCLFSLAEFASILLTIADPARGKLLEKINRIKKNLYSLLENARSP
Ga0209156_10001375213300026547SoilTLQVVAVYYRQRFCLFSIAEFATILLTIADPARGKLLEKINRIEKNLYSLLENARSP
Ga0209156_1009173413300026547SoilTLQVVAVYYRQRFCLFSIAEFATILLTIADPARGKLLEKINRLEKNLYSLLENARSP
Ga0209648_1063489823300026551Grasslands SoilWQLLSPTLEVVAVYYRQRFCLLTLAEYGRILLDIAEPVRGKLREKLRRIEREQYSLLETARSP
Ga0209011_121407713300027678Forest SoilGGVWERTWQLLSPSFEVVAVYYQQRFCLLTLAEFGAILLDIADPARSKLREKLKRIQREQYSLLENARPP
Ga0208696_125106713300027696Peatlands SoilYTRQLLSPSLEVVAVYYRQHFCLLTLAEFGRILLDIPDPARAKLREKLKRIEREQYSLLENARPP
Ga0209261_1018535823300027735Wetland SedimentGGVWERTWQLLSPTLEVVAVYYRQRFCLLTLTEFGKILLAIDEPARSKLREKLRRIDREQYSLLENARSP
(restricted) Ga0233416_1017552223300027799SedimentRGLWECTWQLLSPTLEVVAVYYRQRFCLLTLAEYSRILLDIAEPARGKLREKLRRIEREQYSLLETARAP
Ga0209180_1000783163300027846Vadose Zone SoilVWERTWQLLSPTLEVVAVYYRQRFCLLTLAEFGRILLDIAEPVRGKLREKLRRIEREQYTLLENARAP
Ga0209180_1066973913300027846Vadose Zone SoilQRFCLLTLAEYGRILLDIAEPVRGKLREKLRRIEREQYSLLETARSP
Ga0209517_1025632513300027854Peatlands SoilLEVVTVYYGQRFCLLTLAEFGRILLDIPDPARAKLREKLKRIEREQFSLLENVRPP
Ga0311337_1156123213300030000FenWERIGQLLSPTLEVVAVYYRQRFCLLTLAEYGRILLDIAEPVRGKLREKLRRIEHEQYSLLETARSP
Ga0265316_1126930413300031344RhizosphereVAVYYRQRFCLLTLAEFGRILLDITDPARGKLREKLRRIEQEQYSLLENARSP
Ga0318538_1060528223300031546SoilRQLLSPTLEVVAVYYRQRFCLLTLAEFGRILLDIAEPVRGKLREKLRRIEREQYSLLETARSP
Ga0247727_1069757623300031576BiofilmLSRTLEVVAVYYRQRFCLLTLAEYGRILLEVAEMVRGKLRTTLRQIEREQSTNPL
Ga0315291_1106991223300031707SedimentWERTWELLSPTLEVVAVYYHQRFCLLTLAEYGRILLEVAEPVRAKLRDRLRQIEREQYSLLENARPP
Ga0318509_1076298223300031768SoilNRTWQLLSPTLEVVAVYYRQRFCLLTLAEYGRILLDITEPVRGKLREKLRRIEREQYSLLDTARAP
Ga0315288_1042742313300031772SedimentYYRQRFCLLTLAEYGRILLEVAEPVRAKLRDRLRQIERDQYPLLENARLP
Ga0315280_1007164933300031862SedimentWQLLSPTLEVVAVYYRQRFCLLTLAEYGRILLEVAEPVRAKLRDRLRQIERDQYSLLENARPP
Ga0315285_1020198413300031885SedimentPTLEVVAVYYHQRFCLLTLAEYGRILLEVAEPVRAKLRDRLRQIERDQYSLLENARPP
Ga0315285_1058495013300031885SedimentLNRSVWERTWELLSPTLEVVAVYYRQRFCLLTLAEYGRILLEVAEPVRAKLRDRLRQIEREQYSLLENARPP
Ga0315285_1066507223300031885SedimentVVAVYYRQRFCLLTLAEYGRILLDVAEPVRGKLRDKLRRIEREQYSLLENARPP
Ga0315294_1087759613300031952SedimentYRQRFCLLTLAEYGRILLEVAEPVRAKLRDRLRQIERDQYSLLENARPP
Ga0315278_1040880113300031997SedimentWCAVYYCQRFCPLTLAEYSRILLEVAEPVRAKLRDRLRQIERDQYSLLENARPP
Ga0315278_1041806423300031997SedimentVVAVYYRQRFCLLTLAEYSRILLEVAEPVRAKLRDRLRQIEREQYSLLENARPP
Ga0315289_1018092723300032046SedimentVAVYYRQRFCLLTLAEYGRILLDVAEPVRGKLRDRLRRIEREQYSLLENARPP
Ga0315289_1029336213300032046SedimentVYYHQRFCLLTLAEYGRILLEVAEPVRAKLRDRLRQIEREQYSLLENARPP
Ga0315284_1228626213300032053SedimentCLLTLAEYGRILLEVAEPVRAKLRDRLRQIERDQYPLLENARLP
Ga0315282_1059278313300032069SedimentTLEVVAVYYRQRFCLLTLAEYGRILLEVAEPVRAKLRDRLRQIERDQYSLLDNARPP
Ga0315277_1007498323300032118SedimentVYYRQRFCLLTLAEYGRILLEVAEPVRGKLRDRLRQIEREQCLLLENAQPP
Ga0315277_1051726313300032118SedimentVAVYYRQRFCLLTLAEYGRILLEVAEPVRGILRDRLRQIEREQYSLLENARPP
Ga0315277_1102048713300032118SedimentVAVYYRQRFCLLTLAEYGRILLEVAEPVRAKLRDRLRQIERDQYSLLENARSP
Ga0315277_1162615213300032118SedimentWKWCAVYYCQRFCPLTLAEYSRILLEVAEPVRAKLRDRLRQIERDQYSLLENARPP
Ga0315295_1131821023300032156SedimentQLLSPTLEVVAVYYRQRFCLLTLAEYGRILLEVAEPVRAKLRDRLRQIEREQYSLLENARPP
Ga0311301_1168227923300032160Peatlands SoilVVAVYYRQRFCLLTLAEFGRILLDITDPARGKLREKLRRIEREQYSLLETARAP
Ga0315281_1134003523300032163SedimentAVYYRQRFCLLTPAEYGRILLEVAEPVRAKLRDRLRQIEREQYSLLENARPP
Ga0315283_1075619523300032164SedimentGSVWERAWQLLSPTLEVVAVYYRQRFCLLTLAEYSRILLEVAEPVRAKLSDRLRQIEREQYSLLENARPP
Ga0315268_1010252533300032173SedimentFCLLTLAEFARLLLDVAEPARTKLRQKLSRIEKDLYSLLENARSP
Ga0315276_1079871923300032177SedimentELLSPTLEVVAVYYHQRFCLLRLAEYGRILLEVAEPVRAKLRDRLRQIERDQYSLLENARPP
Ga0315286_1201442513300032342SedimentQELNRSVWGRAWQLLSPTLEVVAVYYRQRFCLLTLAEYGRILLDVAEPVRSKLRDRLRRIEREQYSLLENARPP
Ga0315286_1210294813300032342SedimentVVAVYYRQRFCLLTLAEYSRILLEVAEPVRAKLRDRLRQIERDQHSLLESARPP
Ga0315275_1157338813300032401SedimentQLLSPTLEVVAVYYRQRFCLLTLAEYSRILLDVAEPARGKLRDRLRRIEREQSSLLENARPP
Ga0335081_1233718813300032892SoilVYYRQRFCLLTLAEYGRILLDIAEPVRGKLREELRCIEREPYSLLETARSP
Ga0318519_1100586613300033290SoilFPLLNPTLHVVAVYYRQRFCLFSLAEFARILLTLADPARSQLLEKIQHLEKNLYSLLENARSP
Ga0316605_1097811523300033408SoilSPTLEVVAVYYRQRFCLLTLDEYGRILLDVTGPVRAKLRHRLRPIERAQYSLLENARPP
Ga0316622_10212826913300033416SoilYYRQRFCLLTLAECGRLLLEIVEPARGKLRERLRQIERQQSSLLENARPP
Ga0326726_1239294413300033433Peat SoilLEVVAVYYRQRFCLLTLAEFGRILLDIPDPARGKLREKLRRLEREQYSLLENARSP
Ga0316627_10148529623300033482SoilWERAWQLLSPTLEVVAVYYRQRFCLLTLAEYGRILLDVTGPVRAKLRHRLRQIEREQYSLLENARPP
Ga0316617_10257451513300033557SoilERAWQLLSPTLEVVAVYYRQRFCLLTLAEYGRILLDVTGPVRAKLRHRLRPIEREQYSLLENARPP
Ga0373901_109787_369_5813300034083Sediment SlurryGSVWGSAWQLLSPALEVVAVYYRQRFCLLTLAEYGRILLEVAEPVRGKLRDRLRQIEREQHSLLENARPP

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.