Metagenome / Metatranscriptome Family F094686

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094686
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	44 residues
Representative Sequence	MPARTPREVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKE
Number of Associated Samples	58
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.08 %
% of genes near scaffold ends (potentially truncated)	97.14 %
% of genes from short scaffolds (< 2000 bps)	90.48 %
Associated GOLD sequencing projects	50
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.571 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (48.571 % of family members)
Environment Ontology (ENVO)	Unclassified (69.524 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (70.476 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.86% β-sheet: 0.00% Coil/Unstructured: 57.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF13460	NAD_binding_10	3.81
PF10162	G8	3.81
PF07228	SpoIIE	1.90
PF09863	DUF2090	1.90
PF02371	Transposase_20	1.90
PF04264	YceI	1.90
PF00589	Phage_integrase	1.90
PF00196	GerE	0.95
PF00793	DAHP_synth_1	0.95
PF01738	DLH	0.95
PF00665	rve	0.95
PF11154	DUF2934	0.95
PF01740	STAS	0.95
PF12779	WXXGXW	0.95
PF01850	PIN	0.95
PF07676	PD40	0.95
PF00691	OmpA	0.95
PF00069	Pkinase	0.95
PF02518	HATPase_c	0.95
PF04366	Ysc84	0.95
PF08447	PAS_3	0.95
PF06472	ABC_membrane_2	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.81
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	1.90
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.90
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.95
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.95
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.95
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.95
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.57 %
Unclassified	root	N/A	31.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.57 %
Unclassified	root	N/A	31.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.57 %
Unclassified	root	N/A	31.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.43 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	23.81 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	15.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.43 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16.19 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	8.57 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.90 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.90 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.43 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.62 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.90 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	0.95 %
Thiotrichales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales	0.95 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.43 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	14.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.62 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.90 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	1.90 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.95 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.95 %
Piscirickettsiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae	0.95 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.43 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	13.33 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.62 %
delta proteobacterium NaphS2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	1.90 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.90 %
Thiomicrospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Thiomicrospira	0.95 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.95 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.95 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.43 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	13.33 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.62 %
delta proteobacterium NaphS2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	1.90 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.90 %
Methylobacterium mesophilicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium mesophilicum	0.95 %
unclassified Pseudomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas	0.95 %
Thiomicrospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Thiomicrospira	0.95 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.43 %
unclassified Rhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium	12.38 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.62 %
delta proteobacterium NaphS2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	1.90 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.90 %
Pseudomonas sp. GP01-A4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. GP01-A4	0.95 %
Methylobacterium mesophilicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium mesophilicum	0.95 %
Thiomicrospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Thiomicrospira	0.95 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.43 %
Rhizobium sp. CF097	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. CF097	12.38 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.62 %
delta proteobacterium NaphS2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	1.90 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.90 %
Pseudomonas sp. GP01-A4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. GP01-A4	0.95 %
Methylobacterium mesophilicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium mesophilicum	0.95 %
Thiomicrospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Thiomicrospira	0.95 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004629\|Ga0008092_11206454	Not Available	546	Open in IMG/M
3300004633\|Ga0066395_11031735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium mesophilicum	502	Open in IMG/M
3300005332\|Ga0066388_103335981	Not Available	820	Open in IMG/M
3300005526\|Ga0073909_10527311	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300010358\|Ga0126370_10486668	Not Available	1039	Open in IMG/M
3300010361\|Ga0126378_10156107	All Organisms → cellular organisms → Bacteria	2328	Open in IMG/M
3300010361\|Ga0126378_13403361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. CF097	505	Open in IMG/M
3300010366\|Ga0126379_11373977	Not Available	812	Open in IMG/M
3300010376\|Ga0126381_100892348	All Organisms → cellular organisms → Bacteria	1279	Open in IMG/M
3300010376\|Ga0126381_101167967	Not Available	1112	Open in IMG/M
3300010376\|Ga0126381_103716175	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300010376\|Ga0126381_103757399	Not Available	593	Open in IMG/M
3300010398\|Ga0126383_11771185	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300012971\|Ga0126369_11490053	Not Available	766	Open in IMG/M
3300012971\|Ga0126369_12865007	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300016294\|Ga0182041_10372933	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1206	Open in IMG/M
3300016294\|Ga0182041_10788676	Not Available	848	Open in IMG/M
3300016294\|Ga0182041_11357153	Not Available	652	Open in IMG/M
3300016319\|Ga0182033_10588464	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	965	Open in IMG/M
3300016319\|Ga0182033_11500956	Not Available	608	Open in IMG/M
3300016341\|Ga0182035_10394480	All Organisms → cellular organisms → Bacteria → Proteobacteria	1161	Open in IMG/M
3300016341\|Ga0182035_11027007	Not Available	731	Open in IMG/M
3300016341\|Ga0182035_11505177	Not Available	606	Open in IMG/M
3300016341\|Ga0182035_11902122	Not Available	540	Open in IMG/M
3300016357\|Ga0182032_10683505	Not Available	860	Open in IMG/M
3300016357\|Ga0182032_11945178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. CF097	515	Open in IMG/M
3300016357\|Ga0182032_12071368	Not Available	500	Open in IMG/M
3300016371\|Ga0182034_10047885	All Organisms → cellular organisms → Bacteria → Proteobacteria	2805	Open in IMG/M
3300016371\|Ga0182034_10982351	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300016371\|Ga0182034_11627845	Not Available	567	Open in IMG/M
3300016371\|Ga0182034_11958435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. CF097	517	Open in IMG/M
3300016387\|Ga0182040_10206564	Not Available	1448	Open in IMG/M
3300016404\|Ga0182037_11754863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. CF097	554	Open in IMG/M
3300016404\|Ga0182037_11838631	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300016422\|Ga0182039_10418517	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1141	Open in IMG/M
3300016445\|Ga0182038_10633787	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300016445\|Ga0182038_11029498	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	730	Open in IMG/M
3300017924\|Ga0187820_1051681	All Organisms → cellular organisms → Bacteria	1112	Open in IMG/M
3300017924\|Ga0187820_1144670	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	712	Open in IMG/M
3300017933\|Ga0187801_10294368	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	659	Open in IMG/M
3300017934\|Ga0187803_10395434	Not Available	559	Open in IMG/M
3300017943\|Ga0187819_10132497	Not Available	1486	Open in IMG/M
3300017970\|Ga0187783_11364391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. CF097	511	Open in IMG/M
3300017972\|Ga0187781_10148684	All Organisms → cellular organisms → Bacteria	1643	Open in IMG/M
3300017975\|Ga0187782_10101683	All Organisms → cellular organisms → Bacteria	2117	Open in IMG/M
3300018007\|Ga0187805_10070139	All Organisms → cellular organisms → Bacteria → Acidobacteria	1576	Open in IMG/M
3300018058\|Ga0187766_11265520	Not Available	536	Open in IMG/M
3300021405\|Ga0210387_10326733	All Organisms → cellular organisms → Bacteria	1352	Open in IMG/M
3300021405\|Ga0210387_11230247	Not Available	649	Open in IMG/M
3300026847\|Ga0207802_1009902	Not Available	856	Open in IMG/M
3300026979\|Ga0207817_1015710	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300031561\|Ga0318528_10760402	Not Available	518	Open in IMG/M
3300031719\|Ga0306917_10428777	All Organisms → cellular organisms → Bacteria → Acidobacteria	1034	Open in IMG/M
3300031719\|Ga0306917_10542775	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300031719\|Ga0306917_10673034	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300031719\|Ga0306917_10987910	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300031720\|Ga0307469_11670015	Not Available	613	Open in IMG/M
3300031744\|Ga0306918_10410111	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300031744\|Ga0306918_10513191	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300031744\|Ga0306918_10581757	Not Available	877	Open in IMG/M
3300031744\|Ga0306918_10850645	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300031765\|Ga0318554_10665012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. CF097	585	Open in IMG/M
3300031770\|Ga0318521_10548342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. CF097	697	Open in IMG/M
3300031770\|Ga0318521_11037674	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300031781\|Ga0318547_10056126	All Organisms → cellular organisms → Bacteria → Proteobacteria	2137	Open in IMG/M
3300031795\|Ga0318557_10235377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. CF097	838	Open in IMG/M
3300031823\|Ga0307478_11644591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. CF097	530	Open in IMG/M
3300031860\|Ga0318495_10522909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. CF097	517	Open in IMG/M
3300031879\|Ga0306919_10121614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1869	Open in IMG/M
3300031879\|Ga0306919_10524573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	913	Open in IMG/M
3300031880\|Ga0318544_10382721	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300031890\|Ga0306925_10003774	All Organisms → cellular organisms → Bacteria	13522	Open in IMG/M
3300031890\|Ga0306925_10490785	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
3300031890\|Ga0306925_10658243	All Organisms → cellular organisms → Bacteria	1100	Open in IMG/M
3300031890\|Ga0306925_11050956	Not Available	826	Open in IMG/M
3300031897\|Ga0318520_10295493	All Organisms → cellular organisms → Bacteria → Acidobacteria	975	Open in IMG/M
3300031897\|Ga0318520_10690491	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637	Open in IMG/M
3300031897\|Ga0318520_10787373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	596	Open in IMG/M
3300031910\|Ga0306923_10543397	All Organisms → cellular organisms → Bacteria	1310	Open in IMG/M
3300031910\|Ga0306923_11567083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Thiomicrospira	686	Open in IMG/M
3300031910\|Ga0306923_11794444	All Organisms → cellular organisms → Bacteria → Proteobacteria	630	Open in IMG/M
3300031910\|Ga0306923_12255205	Not Available	544	Open in IMG/M
3300031912\|Ga0306921_10362254	All Organisms → cellular organisms → Bacteria	1694	Open in IMG/M
3300031912\|Ga0306921_10782921	All Organisms → cellular organisms → Bacteria → Acidobacteria	1090	Open in IMG/M
3300031912\|Ga0306921_11859772	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300031941\|Ga0310912_10459771	All Organisms → cellular organisms → Bacteria	992	Open in IMG/M
3300031941\|Ga0310912_10886440	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	687	Open in IMG/M
3300031942\|Ga0310916_10380455	Not Available	1200	Open in IMG/M
3300031945\|Ga0310913_10006822	All Organisms → cellular organisms → Bacteria → Acidobacteria	6621	Open in IMG/M
3300031945\|Ga0310913_10108421	All Organisms → cellular organisms → Bacteria	1886	Open in IMG/M
3300031945\|Ga0310913_10466561	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300031947\|Ga0310909_10104425	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2282	Open in IMG/M
3300031947\|Ga0310909_11339358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. CF097	575	Open in IMG/M
3300032001\|Ga0306922_10929408	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300032001\|Ga0306922_11003564	Not Available	861	Open in IMG/M
3300032035\|Ga0310911_10004454	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5973	Open in IMG/M
3300032051\|Ga0318532_10358362	Not Available	518	Open in IMG/M
3300032076\|Ga0306924_11077323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. GP01-A4	877	Open in IMG/M
3300032076\|Ga0306924_12133654	Not Available	573	Open in IMG/M
3300032094\|Ga0318540_10348532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. CF097	715	Open in IMG/M
3300032261\|Ga0306920_102002463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. CF097	811	Open in IMG/M
3300032261\|Ga0306920_102168211	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300032261\|Ga0306920_103354116	Not Available	596	Open in IMG/M
3300033158\|Ga0335077_10107777	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	3259	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.29%
Aquatic	Environmental → Aquatic	5.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.29%
Freshwater	Environmental → Aquatic → Freshwater	5.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.71%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.71%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.76%
Loam	Environmental → Terrestrial → Soil → Loam	3.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	73.33%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.43%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.71%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.81%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	48.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.48%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.71%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.90%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.95%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004629	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A01 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300026847	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 20 (SPAdes)	Environmental	Open in IMG/M
3300026979	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 13 (SPAdes)	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0008092_112064541	3300004629	Tropical Rainforest Soil	MPVRTPKEVFLMLLSNVRNRTERQSNIYQEIGKHAEEPEIKEAIEAR
Ga0066395_110317351	3300004633	Tropical Forest Soil	MPARNPREVFLMLLSNVRNRTERQAEIYQEISKHAEEPEV
Ga0066388_1033359812	3300005332	Tropical Forest Soil	MPVRNPREVFLMLLSNVRNRTERQSEVYQEIGKHAEEPEIKEAIEAR
Ga0073909_105273112	3300005526	Surface Soil	MEKDMPVRTPKEVFLMLLSNVRNRTERQSTIYQEIGKHAEES
Ga0126370_104866681	3300010358	Tropical Forest Soil	MAARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAE
Ga0126378_101561071	3300010361	Tropical Forest Soil	MPARNPKDVFLMLLSDVRNRTERQSDIYREIGKHAEEPEVKEAIEARAFVSKQILEK
Ga0126378_134033611	3300010361	Tropical Forest Soil	MPARNPKEVFLMLLSNVRNRTERQSEIYQEIGNHAEDPQIKEAIDGRAFVS
Ga0126379_113739771	3300010366	Tropical Forest Soil	MEKTMPARNPKEVFLLLLSEVRNRTERQSEVYQEIAKHADEPE
Ga0126381_1008923481	3300010376	Tropical Forest Soil	MPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAE
Ga0126381_1011679671	3300010376	Tropical Forest Soil	MAARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEP
Ga0126381_1037161752	3300010376	Tropical Forest Soil	MPARNPREVFLMLLSEVRNRTERQSNIYQEFGKHAEEPEVKEAIES
Ga0126381_1037573991	3300010376	Tropical Forest Soil	MPARNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEI
Ga0126383_117711851	3300010398	Tropical Forest Soil	MMAAKTPKEVFLMLLSNVRNRTERQADIYREIGKHAEEPEIKEAIEARAFV
Ga0126369_114900532	3300012971	Tropical Forest Soil	MPARTPKEVFLMLLSNVRNRTERQADLYQEIAKHAEEPDIK
Ga0126369_128650072	3300012971	Tropical Forest Soil	MAARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKEAIE
Ga0182041_103729331	3300016294	Soil	MPARNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEIK
Ga0182041_107886761	3300016294	Soil	MPAKTLKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKEAIEARA
Ga0182041_113571532	3300016294	Soil	MPARTPREVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKEAVEA
Ga0182033_105884643	3300016319	Soil	MPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEAKEAIEARAFVSK
Ga0182033_115009562	3300016319	Soil	MPTRTPKEVFLMLLSNVRNRTERQSEIYQELGKHAEEPEIREAV
Ga0182035_103944802	3300016341	Soil	MPAKNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEIKEAI
Ga0182035_110270071	3300016341	Soil	MPARNPREVFLLLLSNVRNRAERQSDIYQEIGKHAEEPEIK
Ga0182035_115051772	3300016341	Soil	MPARTPKEVFLMLLSNVRNRTERQADIYQEFGKHAEEPEI
Ga0182035_119021222	3300016341	Soil	MPAKTPKEVFLMLLSNVRNRTERQSDIYQEISKHAEQPEIK
Ga0182032_106835052	3300016357	Soil	MPAKTLKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKEAIEARAF
Ga0182032_119451781	3300016357	Soil	MPVRTPREVFLLLLSNVRNRTERQSDIYQEIGKHAEEPEIKEAIEARAFATKQILA
Ga0182032_120713682	3300016357	Soil	MPARNPREVFLLLLSNVRNRTERQSDIYQEIGKHAEEPEIKEAIEARAFVSTQILE
Ga0182034_100478853	3300016371	Soil	MPARTPREVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKE
Ga0182034_109823511	3300016371	Soil	MPARNPREVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEVKEAIEGRAFVSKQI
Ga0182034_116278451	3300016371	Soil	MPARNPREVFLLLLSNVRNRTERQSDIYQEIGKHAEEP
Ga0182034_119584351	3300016371	Soil	MPARNPKEVFIMLLSNVRNRTERQSEIYQEIGKHAEEPEIKEAIEARAFVSKQI
Ga0182040_102065641	3300016387	Soil	MPAKTLKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKE
Ga0182037_117548631	3300016404	Soil	MPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEVKEAIEARAFVSKQILA
Ga0182037_118386312	3300016404	Soil	MPAKTPKEVFLMLLSNVRNRTERQSDIYQEISKHAE
Ga0182039_104185171	3300016422	Soil	MPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEA
Ga0182038_106337872	3300016445	Soil	MPAKNPKEVFLMLLSEVRNRTERQSNIYQEFGKHAEEPEVKEAIEARAFV
Ga0182038_110294981	3300016445	Soil	MPAKTPKEVFLMLLSNVRNRTERQSDIYQEIGKHAE
Ga0187820_10516812	3300017924	Freshwater Sediment	MPVRTPRDVFLMLLSNVRNRTERQSEVYQEIGKHAEEPEIKEAIEARAFASLANERR
Ga0187820_11446702	3300017924	Freshwater Sediment	MPARTPKEVFLMLLSNVRNRTERQSNIYQEIGKHAEE
Ga0187801_102943681	3300017933	Freshwater Sediment	MPARDPREVFLMLLSNVRNRTERAADIYQEIGKHAEEPEIKEAIEARAF
Ga0187803_103954342	3300017934	Freshwater Sediment	MPARTPKEVFLMLLSNVRNRTERQSEVYQEIGKHAEEPEIKEAIEARAFVSKQILA
Ga0187819_101324972	3300017943	Freshwater Sediment	MPARTPKEVFLMLLSNVRNRTERQSNIYQEIGKHAEEPEIKEAIEA
Ga0187783_113643911	3300017970	Tropical Peatland	MPARTPKEVFLMLLSNVRNRTERQSEIYQEIGNHAEDPEIK
Ga0187781_101486841	3300017972	Tropical Peatland	MPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKYAEEPEVKEAIEARAFVS
Ga0187782_101016831	3300017975	Tropical Peatland	MPIRTPKEVFLMLLSNVRNRTERQSDIYQEIGRHAEEPEIKEAIEARAFVSKQ
Ga0187805_100701391	3300018007	Freshwater Sediment	MPARTPKEVFLMLLSNVRNRTERQSNIYQEIGKHA
Ga0187766_112655202	3300018058	Tropical Peatland	MPAKNPKEVFLMLLSNVRNRTERQSQIYQEIGKHADEPEIKEAIEA
Ga0210387_103267331	3300021405	Soil	MPVRTPKEVFLMLLSNVRNRTERQSTIYQEIGKHAEEPEIKEAIEARAFTSK
Ga0210387_112302471	3300021405	Soil	MPARNPREVFMMLLSNVRNRTERAADIYQEISKHAEEPEIKEA
Ga0207802_10099021	3300026847	Tropical Forest Soil	MPARNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEIKEA
Ga0207817_10157102	3300026979	Tropical Forest Soil	MPARTPKEVFLMLLSNVRNRTERQSEVYQEIGKHAEEPEIKEAIEARAFVSKQIL
Ga0318528_107604021	3300031561	Soil	MPARTPKEVFLMLLSNVRNRTERQADIYQEIGKHAEEPEIR
Ga0306917_104287771	3300031719	Soil	MAARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKE
Ga0306917_105427751	3300031719	Soil	MPAKNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEIKEA
Ga0306917_106730341	3300031719	Soil	MPARTPKEVFLMLLSNVRNRTERQADIYQEFGKHAEEPEIKE
Ga0306917_109879103	3300031719	Soil	MPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEAKEAIEAR
Ga0307469_116700152	3300031720	Hardwood Forest Soil	MPAKTPKEVFLMLLSNVRNKTERQSEIYQEIGKHAEGPEINEAIGARAFVSKAGGAPLKR
Ga0306918_104101113	3300031744	Soil	MPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEAK
Ga0306918_105131911	3300031744	Soil	MPARNPREVFLMLLSNVRNNTERATNAYQEIRKHAEDAEIKEALEA
Ga0306918_105817571	3300031744	Soil	MAARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIK
Ga0306918_108506452	3300031744	Soil	MPARTPKEVFLMLLSNVRNRTERQADIYQEFGKHAEEPEIKEAIEAR
Ga0318554_106650121	3300031765	Soil	MPARTPKEVFLMLLSNVRNRTERQADIYQEIGKHAEEPEIREAVEA
Ga0318521_105483421	3300031770	Soil	MPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEVNEAIE
Ga0318521_110376741	3300031770	Soil	MPVRTPKEVFLMLLSNVRNRTERQSTIYQEIGKHAEEPEIKE
Ga0318547_100561263	3300031781	Soil	MAARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKEAIEARAFV
Ga0318557_102353771	3300031795	Soil	MPAKTPREVFLMLLSEVRNRTERQSNIYQEFGKHAEEPEIKEAIEARAFVSKQ
Ga0307478_116445911	3300031823	Hardwood Forest Soil	MPARNPREVFLMLLSNVRNRTERAADIYQEIGKHAEDPEIKE
Ga0318495_105229091	3300031860	Soil	MPAKTPREVFLMLLSEVRNRTERQSNIYQEFGKHAEEPEIKEAIEARAF
Ga0306919_101216141	3300031879	Soil	MPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEAKE
Ga0306919_105245733	3300031879	Soil	MPARTPKEVFLMLLSNVRNRTERQADIYQEFGKHAEEPEIKEAIEA
Ga0318544_103827211	3300031880	Soil	MPVRAPKEVFLMLLSNVRNRTERQSNIYQEIGKHAEEPEIKEAI
Ga0306925_100037741	3300031890	Soil	MPARNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEIKEAIEA
Ga0306925_104907851	3300031890	Soil	MPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHA
Ga0306925_106582431	3300031890	Soil	MPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKYAEEPEIKQA
Ga0306925_110509561	3300031890	Soil	MPARNPREVFLMLLSNVRNRTERQSDIYQEIGKHAE
Ga0318520_102954931	3300031897	Soil	MPAKNPREVFLMLLSNVRNRTERQSDIYQEIGKHAE
Ga0318520_106904911	3300031897	Soil	MPARTPKEVFLMLLSNVRNRTERQSDIYQEISKHAEE
Ga0318520_107873732	3300031897	Soil	MPVRTPKEVFLMLLSNVRNRTERQSNIYQEIGKHAEEPEIKEAIE
Ga0306923_101922401	3300031910	Soil	MPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEAKEAIEARAFVSKQILE
Ga0306923_105433971	3300031910	Soil	MPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKYAEEPEIKQAIEGRAF
Ga0306923_115670831	3300031910	Soil	MPARTPKEVFLLLLSNVRNNTEKATNVYQEIGKHAEDPDVKEAIEARA
Ga0306923_117944442	3300031910	Soil	MPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEFKEAIEARAFVSKQI
Ga0306923_122552051	3300031910	Soil	MPAKNPREVFLMLLSNVRNRTERQSDIYQEISKHAEE
Ga0306921_103622541	3300031912	Soil	MPAKNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEIKEAIEA
Ga0306921_107829211	3300031912	Soil	MPARNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEE
Ga0306921_118597721	3300031912	Soil	MPAKTPKEVFLMLLSNVRNRTERQSDIYQEISKHAEEPEIKEAIEGRA
Ga0310912_104597713	3300031941	Soil	MPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPE
Ga0310912_108864402	3300031941	Soil	MPAKTPKEVFLMLLSNVRNRTERQSDIYQEIGKHAEDPEV
Ga0310916_103804552	3300031942	Soil	MPARNPKEVFLMLLSNVRNRTERQSEIYQEIGNHAEDPQIKEAIDGRAFVSKQILA
Ga0310913_100068227	3300031945	Soil	MPAKTPREVFLMLLSEVRNRTERQSNIYQEFGKHAEEPEIKEA
Ga0310913_101084211	3300031945	Soil	MAARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEE
Ga0310913_104665611	3300031945	Soil	MPARTPKEVFLMLLSNVRNRTERQADIYQEFGKHAEEPE
Ga0310909_101044253	3300031947	Soil	MPARTPREVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKEAVEARA
Ga0310909_113393581	3300031947	Soil	MPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEVKEAIEARTFVS
Ga0306922_109294081	3300032001	Soil	MPAKTPKEVFLMLLSNVRNRTERQSDIYRQIGKHAE
Ga0306922_110035642	3300032001	Soil	MPARNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEIKEAIEARAFVS
Ga0310911_100044541	3300032035	Soil	MPARTPKEVFLMLLSNVRNRTERQAEIYQEIGNHAEDP
Ga0318532_103583621	3300032051	Soil	MPVRTPKEVFLMLLSNVRNRTERQSNIYQEIGKHAEE
Ga0306924_110773231	3300032076	Soil	MPARNPREVFLMLLSNVRNNTERATNAYQEIGKHAEDA
Ga0306924_121336541	3300032076	Soil	MPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHA
Ga0318540_103485321	3300032094	Soil	MPARNPKEVFLMLLSNVRNRTERQSEIYQEIGNHAEDPRIKETIDGRAFVSKQCLA
Ga0306920_1020024631	3300032261	Soil	MPVRTPKEVFLMLLSEVRNRTERQSNIYQEIGNHAEEPEIREAI
Ga0306920_1021682112	3300032261	Soil	MPARTPKEVFLMLLSNVRNRTERQADIYQEFGKHAEE
Ga0306920_1033541161	3300032261	Soil	MPPRNPKEVFIMLLSNVRNRTERQSEIYQEIGKHAEEP
Ga0335077_101077771	3300033158	Soil	MPPKTPKDVFLMMLSNVRKNTERAGKIYDEIGKAAEEPEIK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094686

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences