Metagenome / Metatranscriptome Family F094783

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094783
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	51 residues
Representative Sequence	MERIDLKAATKSTLLTLALALALEFAQNTTKGEGAFLSTVEFGGRRWTNDEMS
Number of Associated Samples	20
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	96.15 %
% of genes near scaffold ends (potentially truncated)	45.71 %
% of genes from short scaffolds (< 2000 bps)	65.71 %
Associated GOLD sequencing projects	15
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.143 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (100.000 % of family members)
Environment Ontology (ENVO)	Unclassified (94.286 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (66.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 54.72% β-sheet: 0.00% Coil/Unstructured: 45.28%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF02628	COX15-CtaA	6.67
PF07159	CYRIA-B_Rac1-bd	3.81
PF07890	Rrp15p	2.86
PF00596	Aldolase_II	1.90
PF13537	GATase_7	1.90
PF10294	Methyltransf_16	1.90
PF12248	Methyltransf_FA	0.95
PF00106	adh_short	0.95
PF13621	Cupin_8	0.95
PF02991	ATG8	0.95
PF00022	Actin	0.95
PF00397	WW	0.95
PF03454	MoeA_C	0.95
PF08450	SGL	0.95
PF14023	DUF4239	0.95
PF00916	Sulfate_transp	0.95
PF09286	Pro-kuma_activ	0.95
PF00753	Lactamase_B	0.95
PF00815	Histidinol_dh	0.95
PF05131	Pep3_Vps18	0.95
PF09445	Methyltransf_15	0.95
PF00490	ALAD	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1612	Heme A synthase	Coenzyme transport and metabolism [H]	6.67
COG0113	Delta-aminolevulinic acid dehydratase, porphobilinogen synthase	Coenzyme transport and metabolism [H]	0.95
COG0141	Histidinol dehydrogenase	Amino acid transport and metabolism [E]	0.95
COG0303	Molybdopterin Mo-transferase (molybdopterin biosynthesis)	Coenzyme transport and metabolism [H]	0.95
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	0.95
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	0.95
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	0.95
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.95
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.95
COG4934	Serine protease, subtilase family	Posttranslational modification, protein turnover, chaperones [O]	0.95
COG5277	Actin-related protein	Cytoskeleton [Z]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
All Organisms	root	All Organisms	42.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
cellular organisms	root	All Organisms → cellular organisms	42.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	42.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	14.29 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	1.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Stramenopiles	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles	12.38 %
Chlorophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta	1.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Ochrophyta	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta	12.38 %
prasinophyte incertae sedis	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → prasinophyte incertae sedis	1.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Bacillariophyta	phylum	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	9.52 %
Pelagophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae	2.86 %
Pycnococcaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → prasinophyte incertae sedis → Pycnococcaceae	1.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Pelagomonadales	order	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales	2.86 %
Pycnococcus	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → prasinophyte incertae sedis → Pycnococcaceae → Pycnococcus	1.90 %
Coscinodiscophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Pelagomonas	genus	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas	2.86 %
Pycnococcus provasolii	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → prasinophyte incertae sedis → Pycnococcaceae → Pycnococcus → Pycnococcus provasolii	1.90 %
Thalassiosirophycidae	subclass	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Pelagomonas calceolata	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	2.86 %
Pycnococcus provasolii	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → prasinophyte incertae sedis → Pycnococcaceae → Pycnococcus → Pycnococcus provasolii	1.90 %
Thalassiosirales	order	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Pelagomonas calceolata	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	2.86 %
Pycnococcus provasolii	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → prasinophyte incertae sedis → Pycnococcaceae → Pycnococcus → Pycnococcus provasolii	1.90 %
Thalassiosiraceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Pelagomonas calceolata	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	2.86 %
Pycnococcus provasolii	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → prasinophyte incertae sedis → Pycnococcaceae → Pycnococcus → Pycnococcus provasolii	1.90 %
Thalassiosira	genus	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Pelagomonas calceolata	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	2.86 %
Pycnococcus provasolii	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → prasinophyte incertae sedis → Pycnococcaceae → Pycnococcus → Pycnococcus provasolii	1.90 %
Thalassiosira pseudonana	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300009420\|Ga0114994_10004329	All Organisms → cellular organisms → Eukaryota	10316	Open in IMG/M
3300009420\|Ga0114994_10004595	All Organisms → cellular organisms → Eukaryota	10035	Open in IMG/M
3300009420\|Ga0114994_10014056	All Organisms → cellular organisms → Eukaryota	5668	Open in IMG/M
3300009420\|Ga0114994_10062739	All Organisms → cellular organisms → Eukaryota	2549	Open in IMG/M
3300009420\|Ga0114994_10100029	Not Available	1975	Open in IMG/M
3300009420\|Ga0114994_10239787	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1215	Open in IMG/M
3300009420\|Ga0114994_10446237	Not Available	855	Open in IMG/M
3300009420\|Ga0114994_10472542	Not Available	827	Open in IMG/M
3300009420\|Ga0114994_10478173	Not Available	822	Open in IMG/M
3300009420\|Ga0114994_10517061	Not Available	786	Open in IMG/M
3300009420\|Ga0114994_10557482	Not Available	753	Open in IMG/M
3300009420\|Ga0114994_10688006	Not Available	668	Open in IMG/M
3300009420\|Ga0114994_10912832	Not Available	569	Open in IMG/M
3300009422\|Ga0114998_10504899	Not Available	567	Open in IMG/M
3300009425\|Ga0114997_10537915	Not Available	620	Open in IMG/M
3300009512\|Ga0115003_10248372	Not Available	1060	Open in IMG/M
3300009512\|Ga0115003_10471353	Not Available	735	Open in IMG/M
3300009512\|Ga0115003_10499598	Not Available	712	Open in IMG/M
3300009512\|Ga0115003_10623603	Not Available	629	Open in IMG/M
3300009526\|Ga0115004_10079924	All Organisms → cellular organisms → Eukaryota	2032	Open in IMG/M
3300009526\|Ga0115004_10120063	Not Available	1603	Open in IMG/M
3300009526\|Ga0115004_10122316	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → prasinophyte incertae sedis → Pycnococcaceae → Pycnococcus → Pycnococcus provasolii	1586	Open in IMG/M
3300009526\|Ga0115004_10430422	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	781	Open in IMG/M
3300009526\|Ga0115004_10895774	Not Available	530	Open in IMG/M
3300009705\|Ga0115000_10021478	All Organisms → cellular organisms → Eukaryota	4616	Open in IMG/M
3300009705\|Ga0115000_10075240	All Organisms → cellular organisms → Eukaryota	2287	Open in IMG/M
3300009705\|Ga0115000_10242031	All Organisms → cellular organisms → Eukaryota	1180	Open in IMG/M
3300009705\|Ga0115000_10300564	Not Available	1038	Open in IMG/M
3300009785\|Ga0115001_10020911	Not Available	4362	Open in IMG/M
3300009785\|Ga0115001_10207102	Not Available	1267	Open in IMG/M
3300009785\|Ga0115001_10290976	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1038	Open in IMG/M
3300009785\|Ga0115001_10347703	Not Available	934	Open in IMG/M
3300009785\|Ga0115001_10370344	Not Available	899	Open in IMG/M
3300009785\|Ga0115001_10720535	Not Available	604	Open in IMG/M
3300010883\|Ga0133547_10015029	All Organisms → cellular organisms → Eukaryota	20476	Open in IMG/M
3300010883\|Ga0133547_10060829	All Organisms → cellular organisms → Eukaryota	8717	Open in IMG/M
3300010883\|Ga0133547_10195391	All Organisms → cellular organisms → Eukaryota → Sar	4320	Open in IMG/M
3300010883\|Ga0133547_10718044	All Organisms → cellular organisms → Eukaryota	1976	Open in IMG/M
3300010883\|Ga0133547_11092360	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1534	Open in IMG/M
3300010883\|Ga0133547_11579709	Not Available	1226	Open in IMG/M
3300027780\|Ga0209502_10078732	All Organisms → cellular organisms → Eukaryota	1726	Open in IMG/M
3300027780\|Ga0209502_10094442	Not Available	1532	Open in IMG/M
3300027780\|Ga0209502_10095938	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → prasinophyte incertae sedis → Pycnococcaceae → Pycnococcus → Pycnococcus provasolii	1516	Open in IMG/M
3300027788\|Ga0209711_10155484	Not Available	1093	Open in IMG/M
3300027788\|Ga0209711_10217534	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	871	Open in IMG/M
3300027791\|Ga0209830_10006449	All Organisms → cellular organisms → Eukaryota	8020	Open in IMG/M
3300027791\|Ga0209830_10023412	All Organisms → cellular organisms → Eukaryota	3573	Open in IMG/M
3300027791\|Ga0209830_10024777	Not Available	3446	Open in IMG/M
3300027791\|Ga0209830_10097218	Not Available	1466	Open in IMG/M
3300027791\|Ga0209830_10099327	Not Available	1447	Open in IMG/M
3300027791\|Ga0209830_10125350	Not Available	1252	Open in IMG/M
3300027791\|Ga0209830_10133272	Not Available	1204	Open in IMG/M
3300027791\|Ga0209830_10170603	All Organisms → cellular organisms → Eukaryota → Sar	1031	Open in IMG/M
3300027791\|Ga0209830_10305101	Not Available	705	Open in IMG/M
3300027791\|Ga0209830_10354828	Not Available	636	Open in IMG/M
3300027801\|Ga0209091_10020753	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	4211	Open in IMG/M
3300027801\|Ga0209091_10171972	Not Available	1101	Open in IMG/M
3300027801\|Ga0209091_10297565	Not Available	765	Open in IMG/M
3300027801\|Ga0209091_10437143	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	583	Open in IMG/M
3300027813\|Ga0209090_10010359	All Organisms → cellular organisms → Eukaryota	5634	Open in IMG/M
3300027813\|Ga0209090_10010667	All Organisms → cellular organisms → Eukaryota	5536	Open in IMG/M
3300027813\|Ga0209090_10014199	Not Available	4741	Open in IMG/M
3300027813\|Ga0209090_10018199	Not Available	4131	Open in IMG/M
3300027813\|Ga0209090_10025289	All Organisms → cellular organisms → Eukaryota	3445	Open in IMG/M
3300027813\|Ga0209090_10065093	All Organisms → cellular organisms → Eukaryota	2019	Open in IMG/M
3300027813\|Ga0209090_10068116	Not Available	1968	Open in IMG/M
3300027813\|Ga0209090_10082534	Not Available	1761	Open in IMG/M
3300027813\|Ga0209090_10095166	Not Available	1619	Open in IMG/M
3300027813\|Ga0209090_10167897	Not Available	1148	Open in IMG/M
3300030715\|Ga0308127_1013214	Not Available	986	Open in IMG/M
3300031596\|Ga0302134_10279721	Not Available	643	Open in IMG/M
3300031596\|Ga0302134_10336726	Not Available	566	Open in IMG/M
3300031597\|Ga0302116_1001707	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	13211	Open in IMG/M
3300031597\|Ga0302116_1003264	All Organisms → cellular organisms → Eukaryota	9269	Open in IMG/M
3300031597\|Ga0302116_1003588	All Organisms → cellular organisms → Eukaryota	8815	Open in IMG/M
3300031597\|Ga0302116_1005667	All Organisms → cellular organisms → Eukaryota	6626	Open in IMG/M
3300031597\|Ga0302116_1005916	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	6461	Open in IMG/M
3300031597\|Ga0302116_1007884	All Organisms → cellular organisms → Eukaryota	5387	Open in IMG/M
3300031597\|Ga0302116_1014398	All Organisms → cellular organisms → Eukaryota	3658	Open in IMG/M
3300031597\|Ga0302116_1020770	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	2859	Open in IMG/M
3300031597\|Ga0302116_1045586	Not Available	1669	Open in IMG/M
3300031597\|Ga0302116_1047742	All Organisms → cellular organisms → Eukaryota	1617	Open in IMG/M
3300031597\|Ga0302116_1073259	Not Available	1196	Open in IMG/M
3300031597\|Ga0302116_1080201	Not Available	1121	Open in IMG/M
3300031597\|Ga0302116_1129601	Not Available	800	Open in IMG/M
3300031597\|Ga0302116_1142875	Not Available	747	Open in IMG/M
3300031597\|Ga0302116_1169006	Not Available	666	Open in IMG/M
3300031597\|Ga0302116_1179163	Not Available	640	Open in IMG/M
3300031621\|Ga0302114_10001805	All Organisms → cellular organisms → Eukaryota	13937	Open in IMG/M
3300031621\|Ga0302114_10041710	All Organisms → cellular organisms → Eukaryota	2308	Open in IMG/M
3300031621\|Ga0302114_10081213	Not Available	1525	Open in IMG/M
3300031621\|Ga0302114_10288214	Not Available	649	Open in IMG/M
3300031637\|Ga0302138_10009962	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	4079	Open in IMG/M
3300031637\|Ga0302138_10027180	Not Available	2350	Open in IMG/M
3300031637\|Ga0302138_10044637	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	1747	Open in IMG/M
3300031637\|Ga0302138_10080464	Not Available	1204	Open in IMG/M
3300031637\|Ga0302138_10153709	Not Available	791	Open in IMG/M
3300031675\|Ga0302122_10168690	Not Available	851	Open in IMG/M
3300031676\|Ga0302136_1024889	Not Available	2175	Open in IMG/M
3300031676\|Ga0302136_1028175	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	2026	Open in IMG/M
3300031676\|Ga0302136_1028944	All Organisms → cellular organisms → Eukaryota	1994	Open in IMG/M
3300031676\|Ga0302136_1045728	All Organisms → cellular organisms → Eukaryota	1529	Open in IMG/M
3300031676\|Ga0302136_1065339	Not Available	1233	Open in IMG/M
3300031676\|Ga0302136_1193384	Not Available	604	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	100.00%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300009420	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152	Environmental	Open in IMG/M
3300009422	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138	Environmental	Open in IMG/M
3300009425	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136	Environmental	Open in IMG/M
3300009512	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88	Environmental	Open in IMG/M
3300009526	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90	Environmental	Open in IMG/M
3300009705	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128	Environmental	Open in IMG/M
3300009785	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130	Environmental	Open in IMG/M
3300010883	western Arctic Ocean co-assembly	Environmental	Open in IMG/M
3300027780	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)	Environmental	Open in IMG/M
3300027788	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)	Environmental	Open in IMG/M
3300027791	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes)	Environmental	Open in IMG/M
3300027801	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)	Environmental	Open in IMG/M
3300027813	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)	Environmental	Open in IMG/M
3300030715	Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - AG5_1295_SCM (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031596	Marine microbial communities from Western Arctic Ocean, Canada - CB9_SCM	Environmental	Open in IMG/M
3300031597	Marine microbial communities from Western Arctic Ocean, Canada - AG5_SCM	Environmental	Open in IMG/M
3300031621	Marine microbial communities from Western Arctic Ocean, Canada - AG5_Surface	Environmental	Open in IMG/M
3300031637	Marine microbial communities from Western Arctic Ocean, Canada - CBN3_32.1	Environmental	Open in IMG/M
3300031675	Marine microbial communities from Western Arctic Ocean, Canada - CB21_SCM	Environmental	Open in IMG/M
3300031676	Marine microbial communities from Western Arctic Ocean, Canada - CBN3_20m	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0114994_1000432913	3300009420	Marine	MERIDLKAATKSTLLTLALALALEFAQNTTKGEGAFLSTVEFGGRRWTNDEMSQS*
Ga0114994_1000459517	3300009420	Marine	MEHIDLKAATKSTLLTLALALALEFAQNTTKGEGAFLSTVEFGGRRWTNDEMSP
Ga0114994_100140561	3300009420	Marine	MEHIDLKAATKSTLLTLALALALEFAQNTTKGEGAFLSTVEFGGRRWTN
Ga0114994_100627394	3300009420	Marine	MEYIDLEAATKSTLLTLALALALEFAQNTTKGEGAFLSTVEFGGRRWINDEMSPS*
Ga0114994_101000292	3300009420	Marine	MERIDLKVATKRTLLTLALALALEFAQNTTKGEGAFLSTVEFGGRKWTNDEMSPP*
Ga0114994_102397871	3300009420	Marine	MGRIDLKAATKSTLLTLALALALEFAQNATKGEGAFLSTVEFGGRKWTND
Ga0114994_104462372	3300009420	Marine	MERIDLKAATKSTLLTMALALALEFAQNTTKGEGAFLSTVEFGGRRWTNDEMSPS*
Ga0114994_104725422	3300009420	Marine	MERIDLKAVMKNTLLTLALALEFAQNTTKEEGAFLSTVEFGGRRWTNDEMPPS*
Ga0114994_104781733	3300009420	Marine	MERIDLKAATKSTLLTLALALEIAQNTTKGEGAFLSTMEFGGRRWTNDEMSPP*
Ga0114994_105170612	3300009420	Marine	MERSDLKAVMKSTLLTLALALEFAQNTTKGEGAFLSTVEFGGRRWTN
Ga0114994_105574821	3300009420	Marine	MERIDLKAAAKSVVDVVLALALEFAQNTTKGQGAFLSTVEFGGRRWTHDEMSPS*
Ga0114994_106880061	3300009420	Marine	MERIDLKAATLLMLVLELTLEFAQNTTKGEGAFLSTVEFGGRRWTNDEMSPP*
Ga0114994_109128322	3300009420	Marine	MERIDFRAVMKSTLLTLALALEFAQNTTKGEGAFLSTVEFGGRRWTN
Ga0114998_105048991	3300009422	Marine	MDRIDLKAATKSTLLTLALALEFAQNTTKGEGAFLSTVE
Ga0114997_105379152	3300009425	Marine	MERIDLKAATLLMLVLELTLEFAQNTTKGEGAFLSTVEFGGRRWTNDEMSPS*
Ga0115003_102483721	3300009512	Marine	MERIDLKAVTKSALLTVALALEFAQNTTKGEGAFLSTVEFGGRRWTHD
Ga0115003_104713532	3300009512	Marine	MERIDLKAATKSTLLTVVLALALEFAQNTTKGEGAFLSTVEFGGRRW
Ga0115003_104995981	3300009512	Marine	MERIDLKAATKSTLLMLVLELTLEFAQNTTKGEGAFLSTV
Ga0115003_106236032	3300009512	Marine	MERIDLKAATKSTFLTLALALALEFAQNTTKGEGAFLSTVEFGGRRWTNDEMSP
Ga0115004_100799244	3300009526	Marine	MERIDLKAATKSTLLMLVLELTLEFAQNTTKGEGAFLSTVEFGGRRWTNDEMSPS*
Ga0115004_101200633	3300009526	Marine	MEHIDLKAATKSTLLTLALALALEFAQNTTKGEGAFLSTVEFGGRRWTNDEMSPS*
Ga0115004_101223162	3300009526	Marine	MERIDLKAATKSTLLTLALALALEFAQNTTKGEGAFLSTVEFGGRRWTNDEMS
Ga0115004_104304222	3300009526	Marine	MERIDLKAAAKSTLLTLTLVLELALEFAQNTTKGEGAFLSTVEFGGRRWTNDEISPS*
Ga0115004_108957741	3300009526	Marine	MERIDLKAAKKSMLLTLTLTLAVEFAQNTTKGEGAFLSAVEFGGRRWTNDEMSPP*
Ga0115000_100214781	3300009705	Marine	MERIDLKAATKSTLLTVALALEFEQNTTKGEGAFLSTVEFGG
Ga0115000_100752401	3300009705	Marine	MERIDLKAATKSTLLMFVLELTLEFAQNTTKGEGALLSTVKFGGRRWINDEMSSP*
Ga0115000_102420312	3300009705	Marine	MERSDLKAVMKSTLLTLALALEFAQNTTKGEGAFLSTVEFGGRRWT
Ga0115000_103005641	3300009705	Marine	MEPIDLKAAMKSTLLTLALALALALEFEQNTTKGEGAFLSTVEFGERRWTNDEMSPP*
Ga0115001_100209111	3300009785	Marine	MERIDLKAATKSTLLTLTLALALEFAQNTTKGEGAFLSTVEFGGRRRTNDEM
Ga0115001_102071023	3300009785	Marine	MERIDLKVATKRTLLTLALALALEFAQNTTKGEGAFLSTVEFGGRKWTNDEMSP
Ga0115001_102909761	3300009785	Marine	MERIDLKAAAKSTLLTLTLVLELALEFAQNTTKGEGAFLSTVEFGGRRWTNDE
Ga0115001_103477033	3300009785	Marine	MERIDLKADTESTLLTLALALEFAQNTTKGEGAFLSTVEFGGRKWTNDEMSPS*
Ga0115001_103703441	3300009785	Marine	MERIDLKAATKSTLLTLALALALEFAQKTTKGQGAFLATVEFGGRRWTNDEM*
Ga0115001_107205351	3300009785	Marine	MEPIDLKAARKSTLLTLALALALEFEQNTTKGEGAFLSTVEFGERRWTNDEISPS*
Ga0133547_100150291	3300010883	Marine	MERIDLKAATKSTLLTLTLALALEFAQNTTKGEGAFLSTVEFGGRRRTNDEMSPS*
Ga0133547_100608291	3300010883	Marine	MERIDLKAATKSTLLTVALALEFEQNTTKGEGAFLSTVEFGGRRWTNDEMSPP*
Ga0133547_101953912	3300010883	Marine	MERIDLKAATKSTLLTVVLALALEFAQNTTKGEGAFLSTVEFGGRRWKNDEMSPS*
Ga0133547_107180443	3300010883	Marine	MERIDLKAATKSTLLMLVLELTLEFAQNTTKGEGAFLSTVKFGGRRWTNDEMSSP*
Ga0133547_110923601	3300010883	Marine	MGRIDLKAATKSTLLTLALALALEFAQNATKGEGAFLSTVEFGGRKWTNDEMTPS*
Ga0133547_115797091	3300010883	Marine	MERIDLKAATKSTLLTLALALEFAQNTTKGKGAFLSTVEFGGRRWTNDEMSPS*
Ga0209502_100787322	3300027780	Marine	MERIDLKAATKSTLLMLVLELTLEFAQNTTKGEGAFLSTVEFGGRRWTNDEMS
Ga0209502_100944422	3300027780	Marine	MERSDLKAVMKSTLLTLALALEFAQNTTKGEGAFLSTVEFGGRRWTNDEMSPS
Ga0209502_100959382	3300027780	Marine	MERIDLKAATKSTLLTLALALALEFAQNTTKGEGAFLSTVEFGGRRWTNDEMSQS
Ga0209711_101554841	3300027788	Marine	MERIDLKAATLLMLVLELTLEFAQNTTKGEGAFLSTVEFGGRRWTNDEMSPP
Ga0209711_102175342	3300027788	Marine	MEPIDLKAARKSTLLTLALALALEFEQNTTKGEGAFLSTVEFGE
Ga0209830_100064495	3300027791	Marine	MERSDLKAVMKSTLLTLALALEFAQNTTKGEGAFLSTVEFGGRRWTND
Ga0209830_100234122	3300027791	Marine	MERIHLKAATKSTLTLALALALALALALALALALEFAQNKTKGEGAFLSTVEFGGRRWTNDEMSPS
Ga0209830_100247772	3300027791	Marine	MERIDLKAAKKSMLLTLTLALAVEFAQNTTKGEGAFLSAVEFGGRRWTNDEMSPP
Ga0209830_100972183	3300027791	Marine	MEPIDLKAARKSTLLTLALALALEFEQNTTKGEGAFLSTVEFGERRWTNDEISPS
Ga0209830_100993271	3300027791	Marine	MDRIDLKAATKSTLLTVALALALEVAQNTTKGEGAFLLTVEFGGRRWTNDEMSPS
Ga0209830_101253501	3300027791	Marine	MERIDLKVATKRTLLTLALALALEFAQNTTKGEGAFLSTVEFGGRKWTNDEMS
Ga0209830_101332723	3300027791	Marine	MERIDLKAATKSTLLTLTLALALEFAQNTTKGEGAFLSTVEFGGRRRTNDE
Ga0209830_101706031	3300027791	Marine	MERIDLKAATKSTLLMLVLELTLEFAQNTTKGEGAFLSTVEFGG
Ga0209830_103051011	3300027791	Marine	MGRIDLKAATKSTLLTLALALALEFAQNATKGEGAFLSTVEFGGRKWTNDEMTPS
Ga0209830_103548281	3300027791	Marine	MDRIDLKAATKSTLLTLALALEFAQNTTKGEGAFWTTVEFGG
Ga0209091_100207531	3300027801	Marine	MDRIDLKAATKSTLLTLTLALALEFAQNTTKGEGAFLSTVE
Ga0209091_101719723	3300027801	Marine	MERIDLKAVTKSALLTVALALEFAQNTTKGEGAFLSTVEFGGRRWTHDEMSPS
Ga0209091_101841311	3300027801	Marine	MERIDLKAAKKSMLLTLTLALAVEFAQNTTKGEGA
Ga0209091_102975651	3300027801	Marine	MERIALKAATKSTLLTLALALKFAQNTTKGEGAFLSTVEFGGRRWTNDEM
Ga0209091_104371432	3300027801	Marine	MERIDLKAAAKSTLLTLTLVLELALEFAQNTTKGEGAFLSTVEFGGRR
Ga0209090_100103591	3300027813	Marine	MEHIDLKAATKSTLLTLALALALEFAQNTTKGEGAFLSTVEFGGRRWTNDEMSPS
Ga0209090_100106675	3300027813	Marine	MEHIALKEYTKSTLLTVALVLAWSLRQFTTKGEEAFLSTVEFGGRRWTNDEMSPS
Ga0209090_100141993	3300027813	Marine	MERIDLKAATKSTLLTLALALEIAQNTTKGEGAFLSTMEFGGRRWTNDEMSPP
Ga0209090_100181999	3300027813	Marine	MEHIDLKAATKSTLLTLALALALEFAQNTTKGEGAFLSTVEFGGRRWTNDEMS
Ga0209090_100252894	3300027813	Marine	MDRIDLKAATKSTLLTLTLALALEFAQNTTKGEGAFLSTVEFGGRRWTNDEMSPS
Ga0209090_100650931	3300027813	Marine	MERIDLKAATKSTLLMLVLELTLEFAQNTTKGEGAFLSTVKFGGRRW
Ga0209090_100681164	3300027813	Marine	MERIDLKAATKSTLLTLTLALALEFAQNTTKGEGAFLSTVEFGGRR
Ga0209090_100825343	3300027813	Marine	MERIDLKVATKRTLLTLALALALEFAQNTTKGEGAFLSTVEFGGRKWTNDEMSPP
Ga0209090_100951661	3300027813	Marine	MDRIDLKAATKSTLLTLALALEFAQNTTKGEGAFWTTVEFGGR
Ga0209090_101678972	3300027813	Marine	MGRIDLKAATKSTLLTLALALALEFAQNATKGEGAFLSTVEFGGRKW
Ga0308127_10132142	3300030715	Marine	MERIDLKAATKSTLLTMALALALEFAQNTTKGEGAFLSTVEFGGRRWTNDEMSPS
Ga0302134_102797211	3300031596	Marine	MERIDLKAATKSTLLMLVLELTLEFAQNTTKGEGAFLSTVEFGGRR
Ga0302134_103367262	3300031596	Marine	MDRIDLKAATKSTLLTLTLALALEFAQNTTKGEGAFLSTVEFGGRR
Ga0302116_100170720	3300031597	Marine	MERIDLKAATKSTLLTLALALALEFAQKTTKGQGAFLATVEFGGRRWTNDEM
Ga0302116_100326416	3300031597	Marine	MERIDLKAATKSTLLTVVLALALEFAQNTTKGEGAFLSTVEFGGRRWKNDEMSPS
Ga0302116_10035882	3300031597	Marine	MERIDLKAAAKSTLLTLTLVLELALEFAQNTTKGEGAFLSTVEFGGRRWTNDEISPS
Ga0302116_10056672	3300031597	Marine	MERIDLKAATKSTLLTVALALEFEQNTTKGEGAFLSTVEFGGRRWTNDEMSPP
Ga0302116_10059161	3300031597	Marine	MERIDLKAATKSTLLTLALALEFAQNTNKGEGAFWSTVEFGGRRWTNDEMSPP
Ga0302116_10078841	3300031597	Marine	MEHIDLKAATKSTLLTLALALALEFAQNTTKGEGAFLSTVEF
Ga0302116_10143985	3300031597	Marine	MERIDLKAATKSTLLMLVLELTLEFAQNTTKGEGAFLSTVKFGGRRWTNDEM
Ga0302116_10207702	3300031597	Marine	MEYIDLEAATKSTLLTLALALALEFAQNTTKGEGAFLSTVEFGGRRWINDEMSPS
Ga0302116_10455862	3300031597	Marine	MERIDLKAAAKSVVDVVLALALEFAQNTTKGQGAFLSTVEFGGRRWTHDEMSPS
Ga0302116_10477421	3300031597	Marine	MERTDLKAATKSTLLTVALALEFAQNTTKGEGAFLSTV
Ga0302116_10732591	3300031597	Marine	DLKAATKSTLLTLALALEFAQNTTKGEGAFWTTVEFGGRRWTNDKMSPS
Ga0302116_10802012	3300031597	Marine	MERIDLKADTESTLLTLALALEFAQNTTKGEGAFLSTVEFGGRKWTNDEMSPS
Ga0302116_11296012	3300031597	Marine	MEPIDLKAAMKSTLLTLALALALALEFEQNTTKGEGAFLSTVEFGERRWTNDEMSPP
Ga0302116_11428751	3300031597	Marine	MEPIDLKAAMKSTLLTLALALALALEFEQNTTKGEGAFLSTVEFGERRWTNDE
Ga0302116_11690061	3300031597	Marine	MERIDFRAVMKRRLLTLALALEFAQNTTKGEGAFLSTVEFGGRRWTN
Ga0302116_11791631	3300031597	Marine	MERIDLKAVMKNTLLTLALALEFAQNTTKEEGAFLSTVEFGGRRWTNDEMPPS
Ga0302114_100018051	3300031621	Marine	MEHIDLKAATKSTLLTLALALALEFAQNTTKGEGAFLSTVE
Ga0302114_100417101	3300031621	Marine	MERTDLKAATKSTLLTVALALEFAQNTTKGEGAFLSTVEFGGRRWTHDEMSPP
Ga0302114_100812132	3300031621	Marine	MERIDLKAAMKSTLLTLALALEFAQNTTKGEGAFLSTVEFGGRRWTNGEMSPM
Ga0302114_102882141	3300031621	Marine	MERIDFRAVMKRRLLTLALALEFAQNTTKGEGAFLSTVEFGGRRWTND
Ga0302138_100099621	3300031637	Marine	MDRIDLKAATKSTLLTLTLALALEFAQNTTKGEGAFLSTVEFGGRRWT
Ga0302138_100271803	3300031637	Marine	MERIDLKAATKSTLLTLTLALALEFAQNTTKGEGAFLSTVEFGGRRRTNDEMSPS
Ga0302138_100446371	3300031637	Marine	MEYIDLEAATKSTLLTLALALALEFAQNTTKGEGAFLSTVEFGGRRWINDEMSPL
Ga0302138_100804642	3300031637	Marine	MERIDLKAASKSTLLTLTLVLALALEFAQNTTKGEGAFLSTVEVGGRRWTNDEMSPS
Ga0302138_101537092	3300031637	Marine	DRIDLKAATKSTLLTLALALEFAQNTTKGEGAFWTTVEFGGRRWTNDKMSPS
Ga0302122_101686902	3300031675	Marine	MERIDLKAATKSTLLTMALALALEFAQNATKGEGAFLSTVEFGGRRWTNDEMSPS
Ga0302136_10248891	3300031676	Marine	MERIDLKAAMKSTLLTLALALEFAQNTTKGEGAFLSTVEFGG
Ga0302136_10281754	3300031676	Marine	MERIDLKAATKSTLLTLALALEIAQNTTKGEGAFLST
Ga0302136_10289442	3300031676	Marine	MERIDLKAATKSTLLMLVLELTLEFAQNTTKGEGAFLSTVKFGGRRWTNDEMSSP
Ga0302136_10457281	3300031676	Marine	MERSDLKAVMKSTLLTLALALEFAQNTTKGEGAFLSTVEFGGR
Ga0302136_10653393	3300031676	Marine	ADTESTLLTLALALEFAQNTTKGEGAFLSTVEFGGRKWTNDEMSPS
Ga0302136_11933842	3300031676	Marine	MERIDFRAVMKSTLLTLALALEFAQNTTKGEGAFLSTVE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094783

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences