NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F094818

Metagenome / Metatranscriptome Family F094818

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F094818
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 43 residues
Representative Sequence DLLPSEYHHLESVDVSGTQVWSELSEYVLSDVTAAVAPPEPEDP
Number of Associated Samples 68
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.95 %
% of genes near scaffold ends (potentially truncated) 90.48 %
% of genes from short scaffolds (< 2000 bps) 99.05 %
Associated GOLD sequencing projects 68
AlphaFold2 3D model prediction Yes
3D model pTM-score0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (86.667 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere
(71.429 % of family members)
Environment Ontology (ENVO) Unclassified
(94.286 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant surface
(85.714 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 45.83%    β-sheet: 0.00%    Coil/Unstructured: 54.17%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A86.67 %
All OrganismsrootAll Organisms13.33 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300009092|Ga0105250_10402109Not Available607Open in IMG/M
3300009972|Ga0105137_102573Not Available764Open in IMG/M
3300009972|Ga0105137_104496Not Available657Open in IMG/M
3300009976|Ga0105128_108763Not Available669Open in IMG/M
3300009980|Ga0105135_112306Not Available676Open in IMG/M
3300009981|Ga0105133_106703Not Available787Open in IMG/M
3300009981|Ga0105133_110328Not Available702Open in IMG/M
3300009981|Ga0105133_113997Not Available648Open in IMG/M
3300009989|Ga0105131_101795Not Available1432Open in IMG/M
3300009989|Ga0105131_102096Not Available1341Open in IMG/M
3300009989|Ga0105131_115510Not Available706Open in IMG/M
3300009989|Ga0105131_128042Not Available590Open in IMG/M
3300009990|Ga0105132_106195Not Available896Open in IMG/M
3300009990|Ga0105132_114931Not Available709Open in IMG/M
3300009990|Ga0105132_135434Not Available549Open in IMG/M
3300009990|Ga0105132_136925All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum541Open in IMG/M
3300009994|Ga0105126_1005096Not Available1100Open in IMG/M
3300009995|Ga0105139_1007571All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae1304Open in IMG/M
3300009995|Ga0105139_1040525Not Available789Open in IMG/M
3300009995|Ga0105139_1043476Not Available770Open in IMG/M
3300009995|Ga0105139_1045551Not Available758Open in IMG/M
3300010396|Ga0134126_12459097Not Available566Open in IMG/M
3300010397|Ga0134124_10655588Not Available1034Open in IMG/M
3300010399|Ga0134127_13006050Not Available550Open in IMG/M
3300010400|Ga0134122_10724806Not Available938Open in IMG/M
3300014968|Ga0157379_12177893Not Available550Open in IMG/M
3300015273|Ga0182102_1017090Not Available658Open in IMG/M
3300015278|Ga0182099_1059588Not Available536Open in IMG/M
3300015280|Ga0182100_1025626Not Available786Open in IMG/M
3300015280|Ga0182100_1034178Not Available721Open in IMG/M
3300015280|Ga0182100_1064079Not Available588Open in IMG/M
3300015284|Ga0182101_1028931Not Available756Open in IMG/M
3300015284|Ga0182101_1064378Not Available587Open in IMG/M
3300015284|Ga0182101_1091338All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum519Open in IMG/M
3300015290|Ga0182105_1002156Not Available1608Open in IMG/M
3300015293|Ga0182103_1022110Not Available811Open in IMG/M
3300015293|Ga0182103_1031908Not Available731Open in IMG/M
3300015297|Ga0182104_1070582Not Available611Open in IMG/M
3300015297|Ga0182104_1089527Not Available562Open in IMG/M
3300015306|Ga0182180_1030739Not Available753Open in IMG/M
3300015306|Ga0182180_1032661All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum736Open in IMG/M
3300015309|Ga0182098_1123435Not Available510Open in IMG/M
3300015311|Ga0182182_1039164Not Available747Open in IMG/M
3300015312|Ga0182168_1069896Not Available652Open in IMG/M
3300015315|Ga0182120_1059055Not Available697Open in IMG/M
3300015315|Ga0182120_1073320All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum645Open in IMG/M
3300015315|Ga0182120_1076139Not Available636Open in IMG/M
3300015317|Ga0182136_1008394Not Available1275Open in IMG/M
3300015317|Ga0182136_1058553Not Available700Open in IMG/M
3300015318|Ga0182181_1073928Not Available588Open in IMG/M
3300015319|Ga0182130_1118241Not Available533Open in IMG/M
3300015324|Ga0182134_1033526Not Available863Open in IMG/M
3300015324|Ga0182134_1059330All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum712Open in IMG/M
3300015324|Ga0182134_1137634All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum518Open in IMG/M
3300015325|Ga0182148_1066685Not Available675Open in IMG/M
3300015326|Ga0182166_1063975Not Available682Open in IMG/M
3300015327|Ga0182114_1075344Not Available686Open in IMG/M
3300015328|Ga0182153_1013331Not Available1148Open in IMG/M
3300015328|Ga0182153_1065200Not Available695Open in IMG/M
3300015329|Ga0182135_1114822Not Available568Open in IMG/M
3300015330|Ga0182152_1073274Not Available674Open in IMG/M
3300015331|Ga0182131_1087788Not Available633Open in IMG/M
3300015332|Ga0182117_1076063Not Available704Open in IMG/M
3300015333|Ga0182147_1103285Not Available617Open in IMG/M
3300015334|Ga0182132_1086953Not Available663Open in IMG/M
3300015335|Ga0182116_1114333Not Available613Open in IMG/M
3300015336|Ga0182150_1090619Not Available642Open in IMG/M
3300015337|Ga0182151_1039652Not Available860Open in IMG/M
3300015337|Ga0182151_1044840Not Available826Open in IMG/M
3300015337|Ga0182151_1152042Not Available522Open in IMG/M
3300015338|Ga0182137_1031683Not Available987Open in IMG/M
3300015338|Ga0182137_1169012All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum515Open in IMG/M
3300015338|Ga0182137_1179530Not Available501Open in IMG/M
3300015339|Ga0182149_1113402All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum602Open in IMG/M
3300015340|Ga0182133_1036733Not Available962Open in IMG/M
3300015350|Ga0182163_1189537Not Available644Open in IMG/M
3300015350|Ga0182163_1295398Not Available507Open in IMG/M
3300015352|Ga0182169_1268980All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum552Open in IMG/M
3300015352|Ga0182169_1296431Not Available522Open in IMG/M
3300015354|Ga0182167_1223456Not Available685Open in IMG/M
3300015354|Ga0182167_1251890Not Available636Open in IMG/M
3300017408|Ga0182197_1059260Not Available719Open in IMG/M
3300017408|Ga0182197_1133354Not Available528Open in IMG/M
3300017414|Ga0182195_1099453Not Available692Open in IMG/M
3300017421|Ga0182213_1079406Not Available905Open in IMG/M
3300017445|Ga0182198_1099884Not Available662Open in IMG/M
3300017445|Ga0182198_1109422Not Available640Open in IMG/M
3300017447|Ga0182215_1082818Not Available704Open in IMG/M
3300017447|Ga0182215_1111012Not Available616Open in IMG/M
3300017693|Ga0182216_1188596Not Available539Open in IMG/M
3300017693|Ga0182216_1226724Not Available500Open in IMG/M
3300017694|Ga0182211_1113510Not Available637Open in IMG/M
3300028049|Ga0268322_1042336All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum558Open in IMG/M
3300028050|Ga0268328_1008011Not Available1028Open in IMG/M
3300028056|Ga0268330_1042168Not Available582Open in IMG/M
3300028152|Ga0268336_1012672All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum662Open in IMG/M
3300032464|Ga0214492_1000247All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum4441Open in IMG/M
3300032464|Ga0214492_1084139Not Available603Open in IMG/M
3300032467|Ga0214488_1092672Not Available659Open in IMG/M
3300032590|Ga0214489_1072125Not Available507Open in IMG/M
3300032625|Ga0214501_1274697All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum533Open in IMG/M
3300032792|Ga0314744_1073719Not Available658Open in IMG/M
3300032824|Ga0314735_1064863Not Available690Open in IMG/M
3300033533|Ga0314770_1294101Not Available508Open in IMG/M
3300033535|Ga0314759_1041081Not Available1352Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere71.43%
Switchgrass AssociatedHost-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated19.05%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil3.81%
PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere3.81%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.95%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.95%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300009092Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaGHost-AssociatedOpen in IMG/M
3300009972Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_224 metaGHost-AssociatedOpen in IMG/M
3300009976Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_186 metaGHost-AssociatedOpen in IMG/M
3300009980Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_219 metaGHost-AssociatedOpen in IMG/M
3300009981Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_208 metaGHost-AssociatedOpen in IMG/M
3300009989Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_197 metaGHost-AssociatedOpen in IMG/M
3300009990Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_206 metaGHost-AssociatedOpen in IMG/M
3300009994Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_171 metaGHost-AssociatedOpen in IMG/M
3300009995Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_227 metaGHost-AssociatedOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015273Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015278Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015280Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015284Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015290Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015293Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015297Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015306Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015309Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015311Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015312Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015315Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015317Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015318Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015319Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015324Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015325Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015326Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015327Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015328Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015329Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015330Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015331Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015332Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015333Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015334Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015335Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015336Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015337Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015338Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015339Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015340Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015350Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015352Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015354Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017408Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017414Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017421Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017445Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017447Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017693Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017694Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300028049Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028050Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028056Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028152Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300032464Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032467Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_31MAY2016_LR2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032590Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_31MAY2016_LR3 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032625Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032792Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_17JUL2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032824Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_26JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033533Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_18SEP2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033535Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_28AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0105250_1040210923300009092Switchgrass RhizosphereCHGLLPYEYHHLESVDESGTQVWSELSLADEYVLSDVTAAVAPPEPEDP*
Ga0105137_10257313300009972Switchgrass AssociatedPCEYHHLESVDESGTQVWSELSLADEYALSDVTAAVAPPRPEDP*
Ga0105137_10449623300009972Switchgrass AssociatedAVHGLLPSECHHLESVDVSGTQVWPELSEYVLSDVTTAVAPPEPEDL*
Ga0105128_10876313300009976Switchgrass AssociatedAAAVHDLLPSVCHHLESVDVSGTQVWPELSEYVLSDVTAAVAPPEPEDP*
Ga0105135_11230613300009980Switchgrass AssociatedVVVSGTQVWSELSLADEHILSDVTAAVAPPEPEDP*
Ga0105133_10670323300009981Switchgrass AssociatedVDESGTQVWSVMSLASEYVLNDVTAAVAPPESEDP*
Ga0105133_11032813300009981Switchgrass AssociatedHHLESEDESGTQVWSELSEYVLSDVTAAVAPPEPEDP*
Ga0105133_11399713300009981Switchgrass AssociatedLESVDESGTQVWSVLSLADEYVLNDVTAAVAPPESTDL*
Ga0105131_10179513300009989Switchgrass AssociatedLLPSECHHLESVDVSGTQVWPELSEYVLSDVTAAVAPPEPEDP*
Ga0105131_10209613300009989Switchgrass AssociatedVHDLLPSEYHYLESVDESGTQVWSELSEYVLSDVTAAVAPPEPEDL*
Ga0105131_11551023300009989Switchgrass AssociatedHHLESVDVSGTQVWPELSEYVLSDVTAAVAPPEPGAL*
Ga0105131_12804213300009989Switchgrass AssociatedSECHHLESVDVSGTQVWPELSEYVLSDVTAAVAPPEPEAP*
Ga0105132_10619523300009990Switchgrass AssociatedPSECHHLESVDVSGTQVWPELSEYVLSDVTAAVAPPEPEAL*
Ga0105132_11493123300009990Switchgrass AssociatedLPSEYHHLESMDESGTQVRSELSEYVLSDVTADVAPPEPEDL*
Ga0105132_13543413300009990Switchgrass AssociatedVHGLLPSECHHLESVDVSGTQVWPELSEYVLSDVTAVVAPPEPEDP*
Ga0105132_13692513300009990Switchgrass AssociatedVHGLLPSECHHLESVDVSGTQVWPELSEYVLSDVTAAVAPPEPEA
Ga0105126_100509633300009994Switchgrass AssociatedVHDLLPSEYHHLESVDESGTQVWSVLSLADEYVLNDVTAAVAPPESEDP*
Ga0105139_100757123300009995Switchgrass AssociatedVHGLLPSEYHHLESVDESGTQEWSVPSLADEYVLNDVTAAVAPPESEDP*
Ga0105139_104052513300009995Switchgrass AssociatedHCHGLLPCEYHHLESVDESGTQVWSKLALADEYVLSDVTAVVAHHEPEDP*
Ga0105139_104347623300009995Switchgrass AssociatedHLESVDVSGTQVWSELSEYVLSDVTAAMAPPEPEDL*
Ga0105139_104555123300009995Switchgrass AssociatedAAVHDLLPSEYHHLESVDVSRTQVWSELSEYILSDVTAVVAPPEPEDL*
Ga0134126_1245909723300010396Terrestrial SoilRCAAVHGLLPSECHHLESVDVSGTQVWSELSEYVLSDVTAAVAPPEPEDL*
Ga0134124_1065558813300010397Terrestrial SoilCHHLESVDVSGTQVWPELSEYVLSDVTAAVAPPEPEDP*
Ga0134127_1300605013300010399Terrestrial SoilESVDVSGTQVWPELSEYVLSDVTAGVAPPEPKDP*
Ga0134122_1072480613300010400Terrestrial SoilGLLPSECHHLESVDVSGTQVWPELSEYVLSDVTAAVAPPEPEAP*
Ga0157379_1217789313300014968Switchgrass RhizosphereHHLESVDVSGTQVWPELSEYVLSDVTAAVAPPEPEAL*
Ga0182102_101709013300015273Switchgrass PhyllosphereWHHLESVDESGTQVWYELSLAVEYALSDVTAAVAPPEPEDP*
Ga0182099_105958823300015278Switchgrass PhyllosphereLPSECHHLESVDVSGTQVWPELSEYVLSDVTAAVAPPEPEDP*
Ga0182100_102562623300015280Switchgrass PhyllosphereLPSECHHLESVDESGTQVWPELSEYVLSDVTAAVAPPEPEAP*
Ga0182100_103417833300015280Switchgrass PhyllosphereSECHHLESVDVSGTQVRSELSEYVLSDETAAVAPHEPEDP*
Ga0182100_106407913300015280Switchgrass PhyllosphereVPLSEYPHLESVDESGTGVWSVQPLADEYALSDVTAAPPEPEDP*
Ga0182101_102893133300015284Switchgrass PhyllosphereVDESGTQVWSVPSLADEYVLNDVTAVVAPPESEDP*
Ga0182101_106437823300015284Switchgrass PhyllosphereVHDLLPSEYYHLESVDEYGTQVRSMPSEYVLIDVTAAVAPPEPEDP*
Ga0182101_109133813300015284Switchgrass PhyllosphereVHGLLPSEYHHLESVDESGTQVWSVPSLDDEYVLNDVTAAVAPPE
Ga0182105_100215633300015290Switchgrass PhyllosphereESVDVSGTQVWPELSEYVLSDVTAAVAPPEPEAP*
Ga0182103_102211033300015293Switchgrass PhyllosphereCAAAVHDLLPSECHHLESVDVSGTQVWPELSEYVLSDVTAVVAPLEPEDP*
Ga0182103_103190813300015293Switchgrass PhyllosphereESMDASGTQVWSELSEYVLSDVTAAVAPPEPEDP*
Ga0182104_107058223300015297Switchgrass PhyllosphereESVDESGTQVWSELSLADEYVLGDVTAAVAPPEPEDP*
Ga0182104_108952723300015297Switchgrass PhyllosphereVHALLSVDESGTQVWSELSEYVLSDVTAAVAPPESEDP*
Ga0182180_103073913300015306Switchgrass PhyllosphereLESVDESGTQEWSVPSLADEYVLNDVTAAVAPPESEGP*
Ga0182180_103266113300015306Switchgrass PhyllosphereVHGLLPSECHHLESVDVSGTQVWPELSEYVLSDVTAAVAPPEPE
Ga0182098_112343513300015309Switchgrass PhyllosphereLLPSECHHLESVDVSGTQVWPELSEYVLSDVTAAVAPPEPGAL*
Ga0182182_103916423300015311Switchgrass PhyllosphereVHDLLPSEYYHLESVDESGTQVWSVLSLADEYVLNDVTAAVAPPESEDP*
Ga0182168_106989613300015312Switchgrass PhyllosphereECHHLESVDVSGTQVWPELSEYVLSDVTAAVAPPEPGAL*
Ga0182120_105905513300015315Switchgrass PhyllosphereVHDLLLSEYYHLESVDEYGTQVRSVLSKYVLSDVTAAVAPPESEDL*
Ga0182120_107332013300015315Switchgrass PhyllosphereVHGLLLSEYHHLESVDESGTQAWSVPSLADEYVLNDVTAAVA
Ga0182120_107613913300015315Switchgrass PhyllosphereDLLPSEYHHLESVDVSGTQVWSELSEYVLSDVTAAVAPPEPEDP*
Ga0182136_100839413300015317Switchgrass PhyllosphereECHHLESVDVSGTQVWPELSEYVLSDVTAAVAPPELEAP*
Ga0182136_105855323300015317Switchgrass PhyllosphereHDLLPSVCHHLESMDVSGTQVWPELSEYVLSDVTAAVAPPEPEDP*
Ga0182181_107392823300015318Switchgrass PhyllosphereHDLLPSECHHLESVDVSGTQVWPELSEYVLSDVTAAVAPPEPEDP*
Ga0182130_111824113300015319Switchgrass PhyllosphereAVHDLLPSEYHHLESVDVSGTQVWSELSEYVLSDVTAAVAPPEPEDL*
Ga0182134_103352623300015324Switchgrass PhyllosphereEFHHLESVDESGTQAWRSELSLADEYVLSDVTATVAPPEPEDPRS*
Ga0182134_105933013300015324Switchgrass PhyllosphereVHDLLPSEYYHLEFVDESGTQVRSVLSEYVLSDVTAAVAPPEPEDP*
Ga0182134_113763413300015324Switchgrass PhyllosphereVHDLLPSEYHHLESVDVSGTQVWSELSEYVLSDVTAA
Ga0182148_106668513300015325Switchgrass PhyllosphereRCAAAVHDLLPSECHHLESVDVSGTQVWPELSEYIPSDVTAAVAPPEPEDP*
Ga0182166_106397523300015326Switchgrass PhyllosphereLPSECHHLESVDVSGTQVWPELSEYVLSDVTAAVAPPEPEAP*
Ga0182114_107534423300015327Switchgrass PhyllosphereCAAAVHDLLPSEYHHLESVDVSGTQVWSELSEYVLSDVTAAVAPPEPEDL*
Ga0182153_101333113300015328Switchgrass PhyllosphereCAAAAVHDLLPSEYYHLESVDEYGTQVRSVLSEYILSDVTAAVAPPESEDL*
Ga0182153_106520013300015328Switchgrass PhyllosphereHHLESVDESGTQVWSVLSLADEYVLNDVTAAVAPPESEDP*
Ga0182135_111482213300015329Switchgrass PhyllosphereAAAVSDLLPSEYHHLESVDESGTQVWSELSEYVLSDVTAAVAPPESEDP*
Ga0182152_107327413300015330Switchgrass PhyllosphereSEYHHLESVDESGTQEWSVPSLADEYVLNDVTAAVAPPESEDP*
Ga0182131_108778813300015331Switchgrass PhyllosphereLESVDVSGTQVWSELSEYVRSDITAAVAPPEPEDP*
Ga0182117_107606313300015332Switchgrass PhyllosphereHCHSLVPCEYHHLESEDKSGTQVWSELSLAGEYALSDITAAVAHPEPEDP*
Ga0182147_110328523300015333Switchgrass PhyllosphereCHHLESVDVSGTQVWSELSEYVLSDVTAAVAPPEPEDP*
Ga0182132_108695313300015334Switchgrass PhyllosphereLESVDVSGTQVWPELSEYVLSDVTAVVAPPKPEDL*
Ga0182116_111433323300015335Switchgrass PhyllosphereESVDESGTQVWSELSLADEYVLSDVTATVAPPEPEDP*
Ga0182150_109061923300015336Switchgrass PhyllosphereYHHLESVDETGTQVWSELSLADEYALSDVTAAVAPPEPEDP*
Ga0182151_103965213300015337Switchgrass PhyllosphereLPCEYHHLESVDVSGTQVWSELSEYVLSDVTANVAPPEPEDL*
Ga0182151_104484013300015337Switchgrass PhyllosphereAAVHDLLPSEYHHLESVDESGTQVWSVLSLADEYVLNDVTAAVAPPESEDP*
Ga0182151_115204213300015337Switchgrass PhyllosphereAAAVPDLLPSEYHHLESLDVSGTQVWSELSEYVLSDVTAAVAPPEPEDL*
Ga0182137_103168313300015338Switchgrass PhyllosphereECHHLESVDVSGTQVWPELPEYVLSDVTAAVAPPEPEDP*
Ga0182137_116901223300015338Switchgrass PhyllosphereVHDLLPSEYHHLESVDETGTQVWSELSLADEYALSDVT
Ga0182137_117953023300015338Switchgrass PhyllosphereEFVDEYGTQVRSVLSEYVLSDVTAAVAPPEPKDP*
Ga0182149_111340223300015339Switchgrass PhyllosphereVYDLLPSEYYHLESVDEYGAQVRSVLSEYVVSDVTAAVAPP
Ga0182133_103673323300015340Switchgrass PhyllosphereLLPCEYYHLESVDEYGTQVRSVLSEYVLSDVTAAVAPPEPEDP*
Ga0182163_118953713300015350Switchgrass PhyllosphereLESVDESGTQVWSELSLADEYALSDVTAVVAPPEPEDP*
Ga0182163_129539813300015350Switchgrass PhyllosphereHHLESVDESGTQVWSELSEYVLSDVTAAVAPPEPEDP*
Ga0182169_126898013300015352Switchgrass PhyllosphereVDESGTQVWPELSLADEYVLSDVTAAVAPPKPEDPSSEAN
Ga0182169_129643113300015352Switchgrass PhyllosphereVHDLLPSEYYHLESVDESGTQVRSVLSEYVLSDVIVAVAPPEPEDP*
Ga0182167_122345613300015354Switchgrass PhyllosphereYHHLESVDVSGTQVWSELSEYVLSDVTAAVAPSESEDL*
Ga0182167_125189013300015354Switchgrass PhyllosphereVHDLLPSEYHHLESVDESETQVRSELSEYVLSDVTAAVAPPVPEDL*
Ga0182197_105926033300017408Switchgrass PhyllosphereHDRLPSECHHLESVDVSGTQVLSELSEYVLSNVTTAVAPPESEDP
Ga0182197_113335413300017408Switchgrass PhyllosphereCAAAAVHGLLPSECHHLESVDVSGTQVWPELSEYVLSDVTAVVAPPEPEDP
Ga0182195_109945313300017414Switchgrass PhyllosphereHGLLPCEYHHLESVVQSGTEVRSELSLADAYALSDVTAAVAPPEPEDP
Ga0182213_107940613300017421Switchgrass PhyllosphereWCAAAVHDLLPSKCHHLESVDVSGTQVWSELSEYVLSDVTAAVAPPESEDP
Ga0182198_109988413300017445Switchgrass PhyllosphereAAAVHDLLPSEYHHLESVDESGTQVWSVLSLANEYVLNDVTAAMAPPESEDP
Ga0182198_110942213300017445Switchgrass PhyllospherePSEYPHLESVDESGTQVWSELSLADGYVLSYVTAVVAPHEPEDP
Ga0182215_108281813300017447Switchgrass PhyllosphereHHLESVDESGTQVWSELSLADEYVLSNVTAAVAPPEPEDP
Ga0182215_111101213300017447Switchgrass PhyllosphereLESVDESGTQVWSELSEYVLSDITAAVAPPEPEDL
Ga0182216_118859613300017693Switchgrass PhyllospherePSDLLPSEYPHLESVDESGTQVWSELSEYVLSEVTAAVAPPKPEDL
Ga0182216_122672413300017693Switchgrass PhyllosphereLESVDVSGTPVWYELSLSDENVLSDIAAAVAPPEPEDP
Ga0182211_111351023300017694Switchgrass PhyllosphereDLLPSEYYHLESVDEYRTQVRSVLSKYVLSDVTAAVAPPELEDP
Ga0268322_104233613300028049PhyllosphereVHDLLPCRYHHLESVDESGTQVWSVLSLADEYVLNNVTTAVAPPES
Ga0268328_100801123300028050PhyllosphereHLESVDVSGTQEWPELSEYVLSDVTAAVAPPEPEAL
Ga0268330_104216823300028056PhyllosphereHLESVDESGTQVWSVPSLADEYILNDVTAAVAPPESEDP
Ga0268336_101267213300028152PhyllosphereMLPCEYHHLESVDESGTQVWSELSLANEYVLNDVTAAV
Ga0214492_100024733300032464Switchgrass PhyllosphereMHDLLPSEYHLLESVDENGTQVWSVLSLTDAYVLNDVTATVAPPEPEDL
Ga0214492_108413923300032464Switchgrass PhyllosphereHHLESVDVSGTQVWPEPSEYVLSDVPAAMAPPEPEDP
Ga0214488_109267223300032467Switchgrass PhyllosphereSECHHLESVDVSGTRVWPELSEYVLSDVTAAVAPPEPEDP
Ga0214489_107212513300032590Switchgrass PhyllosphereAAAVHDLLPSEYYHLESVDESRTQVWSVLSLADEYVLNDVTAAVAPPESQDP
Ga0214501_127469723300032625Switchgrass PhyllosphereVHDLFPFECHHLESVDESGTQVWPELSEYVLSDVTAAVA
Ga0314744_107371913300032792Switchgrass PhyllosphereCDAAVHDLLPSECHHLESVDVSGTQVWPELSEYVPSDVTAAVAPPVPEDP
Ga0314735_106486323300032824Switchgrass PhyllosphereCAAAVHDLLPSECHHLESVDVSGTQVWSELSEYVLSDVTAAVAP
Ga0314770_129410113300033533Switchgrass PhyllosphereVHDLLPSECHHLESVDVSGTQVWPELSEYVLSDVTAAV
Ga0314759_104108123300033535Switchgrass PhyllosphereHDLLPSECHHLESVDVSGTQVWPELSEYVLSDVTAAVAPPEPEAL

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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