Metagenome / Metatranscriptome Family F094971

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094971
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	39 residues
Representative Sequence	GTIAERDEAEFRALIRSAIEREALRGAEGNRVSCEASFL
Number of Associated Samples	83
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.05 %
% of genes from short scaffolds (< 2000 bps)	99.05 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (98.095 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (29.524 % of family members)
Environment Ontology (ENVO)	Unclassified (28.571 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.905 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.73% β-sheet: 0.00% Coil/Unstructured: 46.27%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF00497	SBP_bac_3	0.95

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.10 %
All Organisms	root	All Organisms	1.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.10 %
cellular organisms	root	All Organisms → cellular organisms	1.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.10 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.10 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.10 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004102\|Ga0058888_1006057	Not Available	569	Open in IMG/M
3300004103\|Ga0058903_1016865	Not Available	573	Open in IMG/M
3300004116\|Ga0058885_1005085	Not Available	568	Open in IMG/M
3300004631\|Ga0058899_12197846	Not Available	564	Open in IMG/M
3300007327\|Ga0075016_1439720	Not Available	553	Open in IMG/M
3300010094\|Ga0127480_1030920	Not Available	560	Open in IMG/M
3300010101\|Ga0127481_1128822	Not Available	561	Open in IMG/M
3300010859\|Ga0126352_1100933	Not Available	522	Open in IMG/M
3300010861\|Ga0126349_1008368	Not Available	567	Open in IMG/M
3300011038\|Ga0138547_138147	Not Available	559	Open in IMG/M
3300011038\|Ga0138547_139741	Not Available	567	Open in IMG/M
3300011042\|Ga0138586_109686	Not Available	569	Open in IMG/M
3300011049\|Ga0138554_178602	Not Available	557	Open in IMG/M
3300011057\|Ga0138544_1056768	Not Available	537	Open in IMG/M
3300011057\|Ga0138544_1111489	Not Available	569	Open in IMG/M
3300011078\|Ga0138565_1135896	Not Available	569	Open in IMG/M
3300011080\|Ga0138568_1195103	Not Available	567	Open in IMG/M
3300011082\|Ga0138526_1083199	Not Available	564	Open in IMG/M
3300011085\|Ga0138581_1145167	Not Available	574	Open in IMG/M
3300011088\|Ga0138576_1079615	Not Available	517	Open in IMG/M
3300011120\|Ga0150983_10178452	Not Available	520	Open in IMG/M
3300011120\|Ga0150983_10743293	Not Available	574	Open in IMG/M
3300011120\|Ga0150983_11216922	Not Available	553	Open in IMG/M
3300011120\|Ga0150983_12196840	Not Available	565	Open in IMG/M
3300011120\|Ga0150983_16581858	Not Available	560	Open in IMG/M
3300012372\|Ga0134037_1055897	Not Available	552	Open in IMG/M
3300012398\|Ga0134051_1376007	Not Available	508	Open in IMG/M
3300016702\|Ga0181511_1131050	Not Available	506	Open in IMG/M
3300016705\|Ga0181507_1247835	Not Available	688	Open in IMG/M
3300016750\|Ga0181505_10250333	Not Available	687	Open in IMG/M
3300019156\|Ga0184576_119801	Not Available	568	Open in IMG/M
3300019158\|Ga0184580_117535	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	683	Open in IMG/M
3300019161\|Ga0184602_113658	Not Available	562	Open in IMG/M
3300019163\|Ga0184581_111327	Not Available	557	Open in IMG/M
3300019166\|Ga0184595_129885	Not Available	567	Open in IMG/M
3300019173\|Ga0184575_120439	Not Available	555	Open in IMG/M
3300019181\|Ga0184594_108346	Not Available	549	Open in IMG/M
3300019181\|Ga0184594_112389	Not Available	659	Open in IMG/M
3300019230\|Ga0181501_1230333	Not Available	871	Open in IMG/M
3300019230\|Ga0181501_1299871	Not Available	562	Open in IMG/M
3300019240\|Ga0181510_1232022	Not Available	563	Open in IMG/M
3300019256\|Ga0181508_1262289	Not Available	565	Open in IMG/M
3300019258\|Ga0181504_1175739	Not Available	565	Open in IMG/M
3300019260\|Ga0181506_1140582	Not Available	552	Open in IMG/M
3300021858\|Ga0213852_1220025	Not Available	557	Open in IMG/M
3300022498\|Ga0242644_1034882	Not Available	554	Open in IMG/M
3300022499\|Ga0242641_1035434	Not Available	563	Open in IMG/M
3300022501\|Ga0242645_1023592	Not Available	558	Open in IMG/M
3300022501\|Ga0242645_1027967	Not Available	527	Open in IMG/M
3300022505\|Ga0242647_1022262	Not Available	643	Open in IMG/M
3300022505\|Ga0242647_1034210	Not Available	559	Open in IMG/M
3300022506\|Ga0242648_1070884	Not Available	566	Open in IMG/M
3300022506\|Ga0242648_1071308	Not Available	565	Open in IMG/M
3300022512\|Ga0242676_1038813	Not Available	562	Open in IMG/M
3300022513\|Ga0242667_1028226	Not Available	627	Open in IMG/M
3300022513\|Ga0242667_1049034	Not Available	533	Open in IMG/M
3300022522\|Ga0242659_1101794	Not Available	569	Open in IMG/M
3300022529\|Ga0242668_1013258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1148	Open in IMG/M
3300022529\|Ga0242668_1112641	Not Available	565	Open in IMG/M
3300022709\|Ga0222756_1068169	Not Available	563	Open in IMG/M
3300022711\|Ga0242674_1050950	Not Available	570	Open in IMG/M
3300022712\|Ga0242653_1083552	Not Available	565	Open in IMG/M
3300022716\|Ga0242673_1061920	Not Available	654	Open in IMG/M
3300022716\|Ga0242673_1092771	Not Available	573	Open in IMG/M
3300022716\|Ga0242673_1096511	Not Available	566	Open in IMG/M
3300022717\|Ga0242661_1090235	Not Available	629	Open in IMG/M
3300022717\|Ga0242661_1121679	Not Available	564	Open in IMG/M
3300022717\|Ga0242661_1144311	Not Available	530	Open in IMG/M
3300022722\|Ga0242657_1082451	Not Available	765	Open in IMG/M
3300022722\|Ga0242657_1192349	Not Available	560	Open in IMG/M
3300022722\|Ga0242657_1244700	Not Available	512	Open in IMG/M
3300023533\|Ga0247537_101507	Not Available	669	Open in IMG/M
3300023542\|Ga0247540_103141	Not Available	569	Open in IMG/M
3300023656\|Ga0247547_102949	Not Available	561	Open in IMG/M
3300029701\|Ga0222748_1101717	Not Available	560	Open in IMG/M
3300030595\|Ga0210276_10174950	Not Available	587	Open in IMG/M
3300030730\|Ga0307482_1237215	Not Available	568	Open in IMG/M
3300030730\|Ga0307482_1239201	Not Available	566	Open in IMG/M
3300030760\|Ga0265762_1142051	Not Available	565	Open in IMG/M
3300030762\|Ga0265775_111575	Not Available	565	Open in IMG/M
3300030805\|Ga0265756_112330	Not Available	569	Open in IMG/M
3300030812\|Ga0265734_102917	Not Available	681	Open in IMG/M
3300030812\|Ga0265734_104015	Not Available	606	Open in IMG/M
3300030815\|Ga0265746_1052716	Not Available	570	Open in IMG/M
3300030832\|Ga0265752_107197	Not Available	566	Open in IMG/M
3300030836\|Ga0265767_113949	Not Available	568	Open in IMG/M
3300030873\|Ga0265751_113017	Not Available	554	Open in IMG/M
3300030874\|Ga0265742_1009033	Not Available	743	Open in IMG/M
3300030880\|Ga0265776_105511	Not Available	667	Open in IMG/M
3300030882\|Ga0265764_112199	Not Available	563	Open in IMG/M
3300030885\|Ga0265743_108948	Not Available	670	Open in IMG/M
3300030888\|Ga0265769_119009	Not Available	535	Open in IMG/M
3300030913\|Ga0265759_108386	Not Available	566	Open in IMG/M
3300031040\|Ga0265754_1028972	Not Available	560	Open in IMG/M
3300031042\|Ga0265749_104201	Not Available	540	Open in IMG/M
3300031044\|Ga0265747_111262	Not Available	562	Open in IMG/M
3300031231\|Ga0170824_103700010	Not Available	509	Open in IMG/M
3300031469\|Ga0170819_15906582	Not Available	560	Open in IMG/M
3300031590\|Ga0307483_1029351	Not Available	573	Open in IMG/M
3300031590\|Ga0307483_1029487	Not Available	572	Open in IMG/M
3300031636\|Ga0310113_127212	Not Available	566	Open in IMG/M
3300031663\|Ga0307484_113790	Not Available	571	Open in IMG/M
3300031815\|Ga0316045_123348	Not Available	574	Open in IMG/M
3300032756\|Ga0315742_11748814	Not Available	680	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.05%
Host-Associated	Host-Associated	0.95%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.57%
Aquatic	Environmental → Aquatic	10.48%
Plants	Host-Associated → Plants	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.57%
Freshwater	Environmental → Aquatic → Freshwater	10.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.00%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.57%
Loam	Environmental → Terrestrial → Soil → Loam	8.57%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	45.71%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	34.29%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.57%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.57%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	29.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.67%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	10.48%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	8.57%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.57%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.86%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	1.90%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.90%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002865	Avena fatua rhizosphere microbial communities - H1_Bulk_Litter_4 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300004102	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF212 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004103	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF242 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004116	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF206 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007327	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaT_ABR_2013 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010094	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010101	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010859	Boreal forest soil eukaryotic communities from Alaska, USA - C5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010861	Boreal forest soil eukaryotic communities from Alaska, USA - C4-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011038	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 28 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011042	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 76 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011049	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 35 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011057	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 25 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011078	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 50 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011080	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 53 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011082	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 4 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011085	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 71 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011088	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 62 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012372	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012398	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016702	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016705	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019156	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLE3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019158	Soil microbial communities from Bohemian Forest, Czech Republic ? CSI1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019161	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZA2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019163	Soil microbial communities from Bohemian Forest, Czech Republic ? CSI2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019166	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019173	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLE2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019181	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZI3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019230	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019240	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019256	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019258	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019260	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021858	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2015 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022498	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022499	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022501	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022505	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022506	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022512	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022513	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022709	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022711	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022712	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023533	Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023542	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023656	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSA5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030595	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO083SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030762	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030805	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030812	Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030815	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030832	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030836	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030873	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030874	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030880	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030882	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030885	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030888	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030913	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031040	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031042	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031044	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031590	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031636	Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031663	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031815	Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032756	Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0006761J43178_1079771	3300002865	Avena Fatua Rhizosphere	GTIAKRGEAKLRALIRSAIERSRGGERQANRTSGKAGFL*
Ga0058888_10060572	3300004102	Forest Soil	GTIAKRDEAEFQASIRSAIARARGGEQEKDRVSCKASFT*
Ga0058903_10168652	3300004103	Forest Soil	VYGTIAKRDEAEFRALIRSAIERKRGGEREADRVSCKASFL*
Ga0058885_10050852	3300004116	Forest Soil	GTIAEQDEAEFRAWIRSAIEREALRGAEDNRESCKASFLR*
Ga0058899_121978462	3300004631	Forest Soil	GTIAEWDKAEFRASIRGAIEREALRGAEGNRVSRKASFLR*
Ga0075016_14397201	3300007327	Watersheds	RDEAEFRALIRSAIEREALRGAEGNRVSCEASFL*
Ga0127480_10309202	3300010094	Grasslands Soil	IAKRDKAEFRALIRGAIERKRGEEQEANRVSCEASFL*
Ga0127481_11288221	3300010101	Grasslands Soil	TIAKRDKAEFRALIRGAIERKRGEEQEANRVSCEASFL*
Ga0126352_11009331	3300010859	Boreal Forest Soil	GTIAERDKAEFRALIRSAIEREALRGAEDNRMFREAGFLWPGC*
Ga0126349_10083681	3300010861	Boreal Forest Soil	GTIAERDEAEFRVLIRSAIEREAQRGAKDNRMSGEASFLRYSR*
Ga0138547_1381471	3300011038	Peatlands Soil	TIVEPDEAEFRALIRSAIEREALRGAEDNRVSGEASFFWRSR*
Ga0138547_1397411	3300011038	Peatlands Soil	TIAERDGAEFRALIRSAIEREALRGAEGNRVSCEASFL*
Ga0138586_1096861	3300011042	Peatlands Soil	GTIAERDGAEFRALIRSAIEREALRGAEGNRVSCEASFL*
Ga0138554_1786021	3300011049	Peatlands Soil	TIAEPDEAEFRALIRSAIEREALRGAEDNRVSGEASFFWRSR*
Ga0138544_10567681	3300011057	Peatlands Soil	GTIAERDEAEFRALIRSAIEREALRGAEDNRVSGEASFFWRSR*
Ga0138544_11114891	3300011057	Peatlands Soil	GTIAERDEAEFRALIRSAIEREALRGAEGNRVSCEASFL*
Ga0138565_11358961	3300011078	Peatlands Soil	YGTIVEPDEAEFRALIRSAIEREALRGAEDNRVSGEASFFWRSR*
Ga0138568_11951031	3300011080	Peatlands Soil	TIAERDGAEFRALIRSASEREALRGAEGNRVSCEASFL*
Ga0138526_10831991	3300011082	Peatlands Soil	TIAKRDEAEFRALIRSAIEREALRGAEDNRVSGEASFFWRSR*
Ga0138581_11451671	3300011085	Peatlands Soil	VYGTIVERDGAAMRALIRSAIEREALRGAEGNRVSCEASFL*
Ga0138576_10796151	3300011088	Peatlands Soil	AEFRALIRSAIEREALRGAEDNRVSGEASFFWRSR*
Ga0150983_101784522	3300011120	Forest Soil	RDEAEFRALIRSAIEREALRGAEGNRASCEASFS*
Ga0150983_107432931	3300011120	Forest Soil	GTIAKRDEADFRAMIRSAIEREARRGAKENRASCEVSFS*
Ga0150983_112169221	3300011120	Forest Soil	ERDKAEFRALIRSAIEREAFRGAEGNRVSHEASFFW*
Ga0150983_121968401	3300011120	Forest Soil	VYGTIAERDKAEFRALIRSAIEREALRGAEGNRVSQEASFF*
Ga0150983_165818581	3300011120	Forest Soil	GTIAKQDEAEFRASIRSVIERETRRGAENNRVSGEASFLWWCR*
Ga0134037_10558972	3300012372	Grasslands Soil	GTIAKRDKAEFRALIRGAIERKRGEEQEANRVSCEASFL*
Ga0134051_13760071	3300012398	Grasslands Soil	TIAEQDEAKFRTTIRSAIERKRGGERETNRTSGKASFL*
Ga0181511_11310501	3300016702	Peatland	GTIAERDEAEFRALIRNAIEREALRGAEGNRVSFEASFL
Ga0181507_12478352	3300016705	Peatland	YGTIAKRDEAEFRALIRSAIERKRGGEREADRVSCKASFL
Ga0181505_102503331	3300016750	Peatland	VYGTIAERDEAEFRALIRSAIEREARRGAESNRVSCEASFS
Ga0184576_1198011	3300019156	Soil	GTIAERDEAEFRALIRCAIEREAQRGAESNRESCEASFS
Ga0184580_1175351	3300019158	Soil	VYGTIAERDEAEFRALIRCAIEREAQRGAESNRESCEASFS
Ga0184602_1136583	3300019161	Soil	TIAERDEAEFRALIRCAIEREAQRGAESNRESCEASFS
Ga0184581_1113271	3300019163	Soil	IAERDEAEFRALIRCAIEREAQRGAESNRESCEASFS
Ga0184595_1298851	3300019166	Soil	GTIAKRDEAEFQAPIRGAIERKRGGEQEADRMSRKASFL
Ga0184575_1204393	3300019173	Soil	AERDEAEFRALIRCAIEREAQRGAESNRESCEASFS
Ga0184594_1083462	3300019181	Soil	RDEAEFRAFIRSAIEREAQRGAEGNRVSCEASFSR
Ga0184594_1123891	3300019181	Soil	YGTIAERDEAEFRALIRCAIEREAQRGAESNRESCEASFS
Ga0181501_12303331	3300019230	Peatland	GTIAKRDEAEFQASIRSAIARERGGEQEKDRVSCKASFA
Ga0181501_12998711	3300019230	Peatland	VYGTIAERDKAEFRALIRSAIEREALRGAEGNRVSHEASFFW
Ga0181510_12320222	3300019240	Peatland	TIAERDEAEFRALIRSAIEREARRGAESNRVSCEASFS
Ga0181508_12622892	3300019256	Peatland	GTIAERDEAEFRALIRSAIEREALRGAKGNRVSCEASFM
Ga0181504_11757391	3300019258	Peatland	GTIAERDEAEFRALIRSAIEREALRGAKGNRVSREASFL
Ga0181506_11405821	3300019260	Peatland	IAERDKAEFRALIRSAIEREALRGAEGNRVSHEASFFW
Ga0213852_12200251	3300021858	Watersheds	AKRDEAEFRASIRGAIEREALRGAEGNRVSRKASFLR
Ga0242644_10348821	3300022498	Soil	IAKRDEAEFRALIRSAIEREALRGAEGNRVSCEASFL
Ga0242641_10354342	3300022499	Soil	TIDERDEAEFRALIRSAIEREAQRGAEGNRVSCEASFS
Ga0242645_10235922	3300022501	Soil	IAERDEAEFRALIRSAIEREAQRGAEGNRVSCEASFS
Ga0242645_10279672	3300022501	Soil	AKQGEAEFRALIRSAIERKRDGERDADRVSCKASFL
Ga0242647_10222621	3300022505	Soil	VYGTIAKSDKTEFRALIRRAIEREARRGVKGNRVSDEASFLW
Ga0242647_10342102	3300022505	Soil	IAKRDEADFRAMIRSAIEREARRGAKENRASCEVSFS
Ga0242648_10708841	3300022506	Soil	GTIAKRDEADFRAMIRSAIEREARRGAKENRASCEVSFS
Ga0242648_10713082	3300022506	Soil	GTIAERDEAEFRALIRSAIEREAQRGAEGNRVSCEASFS
Ga0242676_10388132	3300022512	Soil	TIAERDEAEFRALIRSAIEREAQRGAEGNRVSCEASFS
Ga0242667_10282261	3300022513	Soil	TRIAERDTAKIRALIQSAIEREGGGEREADRVSCNESLL
Ga0242667_10490341	3300022513	Soil	IAERDEAEFRALIRSAIEREAQRGAEGNRMSCKASFL
Ga0242659_11017941	3300022522	Soil	GTIAERDEAEFRALIRSAIEREAWRGAEGNRVSCEASFL
Ga0242668_10132581	3300022529	Soil	TIAEQDEAEFQALIRSAIEREAQRGAESNRVSCEASFL
Ga0242668_11126411	3300022529	Soil	TIAERDEAEFRALIRSAIEREAWRGAEGNRVSCEASFL
Ga0222756_10681691	3300022709	Soil	IAKRDEAEFQASIRSAIARARGGEQEKDRVSCKASFT
Ga0242674_10509502	3300022711	Soil	VYGTIAERDEAEFRALIRSAIEREAQRGAEGNRVSCEASFS
Ga0242653_10835522	3300022712	Soil	GTIAKRDEAEFRALIRSAIEREALRGAEGNRVSCEASFL
Ga0242673_10619202	3300022716	Soil	YGTIAERDKAEFRALIRSAIEREALRGAEGNRVSHEASFFW
Ga0242673_10927711	3300022716	Soil	TIAKRDEAEFRALIRSAIERKRGGEREADRVSCKASFL
Ga0242673_10965111	3300022716	Soil	YGTIAKRDEADFRAMIRSAIEREARRGAKENRASCEVSFS
Ga0242661_10902351	3300022717	Soil	KRDEAEFRALIRSAIERKRGGEQEADRVSCKASFL
Ga0242661_11216791	3300022717	Soil	TIAKRDEAEFQASIRSAIARARGGEQEKDRVSCKASFT
Ga0242661_11443112	3300022717	Soil	IAKQGEAEFRALIRSAIERKRDGERDADRVSCKASFL
Ga0242657_10824511	3300022722	Soil	KRDEAEFRALIRSAIERKRGGEREADRVSCKASFL
Ga0242657_11923492	3300022722	Soil	TIAERDKAEFRALIRSAIEREALRGAEGNRVSHEASFFW
Ga0242657_12447002	3300022722	Soil	YGTIAERDEAEFRALIRSAIEREALRGAEGNRVSCEASFL
Ga0247537_1015072	3300023533	Soil	TIAERDEAEFRALIRSAIEREAQRGAEGNRVSCEASFSR
Ga0247540_1031411	3300023542	Soil	GTIAERDEAEFRALIRSAIEREAQRGAEGNRVSCEASFSR
Ga0247547_1029491	3300023656	Soil	IAERDEAEFRALIRSAIEREALRGAEGNRVSCEASFLR
Ga0222748_11017172	3300029701	Soil	AERDKAEFRALIRSAIERERGGEREADRVSFTASFL
Ga0210276_101749501	3300030595	Soil	RVYGTIAERDEAEFRALIRSAIEREALRGAEGDRVFREASFL
Ga0307482_12372151	3300030730	Hardwood Forest Soil	GTRAERDEAEFRALIRSVIEREAQRGAEGNRVSCEASFL
Ga0307482_12392011	3300030730	Hardwood Forest Soil	GTIAERDKAEFRALIRSAIEREALRGAEDNRMFREAGFLWPGC
Ga0265762_11420511	3300030760	Soil	GTIAERDKAEFRASIRSVIEREALRGAKDNRVSQEASFFW
Ga0265775_1115751	3300030762	Soil	GTIAERDEAEFRALIRGAIEREALRGAEGNRMSCEASFL
Ga0265756_1123301	3300030805	Soil	TIAKRDEAEFRVLIRSAIERKRGGEQEADRVSCKASFL
Ga0265734_1029171	3300030812	Soil	TIAERDEAEFRALIRSAIEREALRGAEGNRVSCEASFL
Ga0265734_1040151	3300030812	Soil	VYGTIAKQGEAEFRALIRSAIERKRAGERDADRVSCEASFL
Ga0265746_10527161	3300030815	Soil	TIAERDEAEFRASIRSANRKRSAAGSEKTDRVSCKASFL
Ga0265752_1071972	3300030832	Soil	VYGTIAERDEAEFRALIRSAIEREALRGAEDNRVSCEASFL
Ga0265767_1139491	3300030836	Soil	GTIAERDEAEFRALIRSAIEREALRGAEDNRVSCESSFL
Ga0265751_1130171	3300030873	Soil	GTIAERDEAEFRALIRSAIEREALRGAEDNRVSCEASFL
Ga0265742_10090333	3300030874	Soil	VYGTIAERDEAEFRALIRSAIEREAQRGAEGNRVSCEASFSR
Ga0265776_1055112	3300030880	Soil	GTIAKRDEAEFQASIRSAIERARGGAQEKERVSCKASFA
Ga0265764_1121991	3300030882	Soil	TIAERDEAEFRALIRSAIEREAPRGAEGNRVSCEASFL
Ga0265743_1089481	3300030885	Soil	GTIAEQDEAEFRALIRSAIEREALRGAEGNRVSCEASFL
Ga0265769_1190092	3300030888	Soil	AKRDEAEFQASIRSAIERARGGEQEKDRVSCKASFA
Ga0265759_1083861	3300030913	Soil	TIAERDEAEFRALIRSAIEREAQRGAESNRVSCEASFS
Ga0265754_10289721	3300031040	Soil	TIAERDEAEFRALIRSAIEREALRGAEGNRASCQVSFL
Ga0265749_1042011	3300031042	Soil	VYGTIAEQDEAEFRALIRSAIEREARRGAEGNRVSCEASFL
Ga0265747_1112622	3300031044	Soil	TIAERDEAEFRALIRSAIEREALRGAEDNRVSCEASFL
Ga0170824_1037000101	3300031231	Forest Soil	RVYGTIAEQDEAEFRALIRSAIEREAQRGAEGNRVSWEASFL
Ga0170819_159065822	3300031469	Forest Soil	SGTIAKRDEAEFRVLIRSAIERKRGGEQEADRVSCKASFL
Ga0307483_10293511	3300031590	Hardwood Forest Soil	YGTIAERDEAEFRALIRSVIEREAQRGAEGNRVSCEASFL
Ga0307483_10294871	3300031590	Hardwood Forest Soil	VYGTIAKRDEAEFRASIRSAIEREALRGAEDNRMSSEASFLRYSR
Ga0310113_1272121	3300031636	Soil	GTIAERDEAEFRALIRSAIEREALRGAEGNRVSCEASFL
Ga0307484_1137901	3300031663	Hardwood Forest Soil	VYGTIAERDEAEFRALIRSAIEREAQRGAEGNRVSCEASFL
Ga0316045_1233481	3300031815	Soil	AERDEAEFRALIRSAIEREAQRGAEGNRVSCEASFSR
Ga0315742_117488141	3300032756	Forest Soil	IAERDEAEFRALIRSAIEREAQRGAEGNRVSCEASFSR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094971

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences