Metagenome / Metatranscriptome Family F095087

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095087
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	79 residues
Representative Sequence	MSMDRNDDVVVVARVRLSLADGSNEEWMVPMELTDDALSFHAAIYPPEGAVVVAVDPLKREGAVRQDLVVARADITTL
Number of Associated Samples	53
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	70.48 %
% of genes near scaffold ends (potentially truncated)	22.86 %
% of genes from short scaffolds (< 2000 bps)	91.43 %
Associated GOLD sequencing projects	51
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (75.238 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (42.857 % of family members)
Environment Ontology (ENVO)	Unclassified (42.857 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.095 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 31.13% Coil/Unstructured: 68.87%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF00994	MoCF_biosynth	46.67
PF02464	CinA	5.71
PF02130	YbeY	1.90
PF00291	PALP	0.95
PF09424	YqeY	0.95
PF02086	MethyltransfD12	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1546	Nicotinamide mononucleotide (NMN) deamidase PncC	Coenzyme transport and metabolism [H]	5.71
COG0319	ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme	Translation, ribosomal structure and biogenesis [J]	1.90
COG0338	DNA-adenine methylase	Replication, recombination and repair [L]	0.95
COG3392	Adenine-specific DNA methylase	Replication, recombination and repair [L]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.24 %
Unclassified	root	N/A	24.76 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	75.24 %
Unclassified	root	N/A	24.76 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.24 %
Unclassified	root	N/A	24.76 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	69.52 %
Unclassified	root	N/A	24.76 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.95 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.95 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	33.33 %
Unclassified	root	N/A	24.76 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.95 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.95 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.76 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	18.10 %
Thermomicrobia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	1.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.76 %
unclassified Chloroflexia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia	18.10 %
Sphaerobacteridae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae	1.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.76 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	18.10 %
Sphaerobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales	1.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.76 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	18.10 %
Sphaerobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae	1.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.76 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	18.10 %
Sphaerobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae	1.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.76 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	18.10 %
Sphaerobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.76 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	18.10 %
Sphaerobacter thermophilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2399701	All Organisms → cellular organisms → Bacteria	2515	Open in IMG/M
3300000750\|JGI12272J11983_1051105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1228	Open in IMG/M
3300004114\|Ga0062593_102029419	Not Available	639	Open in IMG/M
3300005045\|Ga0071328_134244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae	1986	Open in IMG/M
3300005562\|Ga0058697_10142119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1040	Open in IMG/M
3300006845\|Ga0075421_101569509	Not Available	717	Open in IMG/M
3300006846\|Ga0075430_100949376	All Organisms → cellular organisms → Bacteria → Terrabacteria group	708	Open in IMG/M
3300006846\|Ga0075430_101702701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	517	Open in IMG/M
3300006853\|Ga0075420_100623984	Not Available	930	Open in IMG/M
3300006876\|Ga0079217_10172432	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1074	Open in IMG/M
3300006894\|Ga0079215_10865063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	642	Open in IMG/M
3300006918\|Ga0079216_10010698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3117	Open in IMG/M
3300007004\|Ga0079218_11894273	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	674	Open in IMG/M
3300007790\|Ga0105679_10377550	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1312	Open in IMG/M
3300007790\|Ga0105679_10813671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1582	Open in IMG/M
3300007790\|Ga0105679_10901101	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300009789\|Ga0126307_10085312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	2493	Open in IMG/M
3300009789\|Ga0126307_10452377	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1036	Open in IMG/M
3300009789\|Ga0126307_11166680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	623	Open in IMG/M
3300009789\|Ga0126307_11218401	Not Available	609	Open in IMG/M
3300009840\|Ga0126313_10093568	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2199	Open in IMG/M
3300009840\|Ga0126313_10164531	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1684	Open in IMG/M
3300009840\|Ga0126313_10679863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	833	Open in IMG/M
3300009840\|Ga0126313_11819138	All Organisms → cellular organisms → Bacteria → Terrabacteria group	510	Open in IMG/M
3300010036\|Ga0126305_10209182	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1240	Open in IMG/M
3300010036\|Ga0126305_10356377	All Organisms → cellular organisms → Bacteria → Terrabacteria group	959	Open in IMG/M
3300010036\|Ga0126305_11191212	Not Available	526	Open in IMG/M
3300010037\|Ga0126304_10161303	Not Available	1455	Open in IMG/M
3300010037\|Ga0126304_10470071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	843	Open in IMG/M
3300010037\|Ga0126304_11121466	All Organisms → cellular organisms → Bacteria → Terrabacteria group	538	Open in IMG/M
3300010038\|Ga0126315_10239921	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1103	Open in IMG/M
3300010038\|Ga0126315_10326882	All Organisms → cellular organisms → Bacteria → Terrabacteria group	951	Open in IMG/M
3300010038\|Ga0126315_10342480	All Organisms → cellular organisms → Bacteria → Terrabacteria group	930	Open in IMG/M
3300010038\|Ga0126315_11021419	Not Available	555	Open in IMG/M
3300010039\|Ga0126309_10152149	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1244	Open in IMG/M
3300010039\|Ga0126309_10839361	Not Available	603	Open in IMG/M
3300010040\|Ga0126308_10023579	All Organisms → cellular organisms → Bacteria	3351	Open in IMG/M
3300010040\|Ga0126308_10249217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1155	Open in IMG/M
3300010041\|Ga0126312_10144651	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1648	Open in IMG/M
3300010042\|Ga0126314_10106457	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1911	Open in IMG/M
3300010042\|Ga0126314_10911243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	650	Open in IMG/M
3300010044\|Ga0126310_10020722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	3286	Open in IMG/M
3300010044\|Ga0126310_10048127	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2352	Open in IMG/M
3300010044\|Ga0126310_10065376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	2081	Open in IMG/M
3300010044\|Ga0126310_10368669	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1013	Open in IMG/M
3300010044\|Ga0126310_10515237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	877	Open in IMG/M
3300010044\|Ga0126310_10561263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	845	Open in IMG/M
3300010044\|Ga0126310_11785295	All Organisms → cellular organisms → Bacteria → Terrabacteria group	513	Open in IMG/M
3300010045\|Ga0126311_10492428	All Organisms → cellular organisms → Bacteria → Terrabacteria group	957	Open in IMG/M
3300010045\|Ga0126311_10871093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	730	Open in IMG/M
3300010045\|Ga0126311_10914679	Not Available	713	Open in IMG/M
3300010045\|Ga0126311_10978632	Not Available	691	Open in IMG/M
3300010045\|Ga0126311_11090807	All Organisms → cellular organisms → Bacteria → Terrabacteria group	656	Open in IMG/M
3300010045\|Ga0126311_11651262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	540	Open in IMG/M
3300010045\|Ga0126311_11911079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	504	Open in IMG/M
3300010166\|Ga0126306_10122955	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1901	Open in IMG/M
3300010166\|Ga0126306_10181730	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1580	Open in IMG/M
3300010166\|Ga0126306_10442086	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1022	Open in IMG/M
3300010166\|Ga0126306_10594873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	881	Open in IMG/M
3300010166\|Ga0126306_10971965	Not Available	691	Open in IMG/M
3300010166\|Ga0126306_11184345	Not Available	627	Open in IMG/M
3300011332\|Ga0126317_10420869	Not Available	806	Open in IMG/M
3300011332\|Ga0126317_10632451	Not Available	526	Open in IMG/M
3300012187\|Ga0136622_10466302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	531	Open in IMG/M
3300012212\|Ga0150985_101060136	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	854	Open in IMG/M
3300012212\|Ga0150985_101971086	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1477	Open in IMG/M
3300012212\|Ga0150985_117051656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1774	Open in IMG/M
3300012469\|Ga0150984_102911183	Not Available	666	Open in IMG/M
3300012469\|Ga0150984_115065857	All Organisms → cellular organisms → Bacteria → Terrabacteria group	574	Open in IMG/M
3300012469\|Ga0150984_123263520	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2177	Open in IMG/M
3300017787\|Ga0183260_10325513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1039	Open in IMG/M
3300018422\|Ga0190265_13663849	Not Available	512	Open in IMG/M
3300018432\|Ga0190275_10500440	Not Available	1248	Open in IMG/M
3300018466\|Ga0190268_10259297	Not Available	1007	Open in IMG/M
3300018933\|Ga0193614_1026957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	1644	Open in IMG/M
3300027691\|Ga0209485_1052074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1054	Open in IMG/M
3300027909\|Ga0209382_12261424	Not Available	512	Open in IMG/M
3300028003\|Ga0247707_1011151	All Organisms → cellular organisms → Bacteria → Terrabacteria group	859	Open in IMG/M
3300028006\|Ga0247717_1026233	All Organisms → cellular organisms → Bacteria → Terrabacteria group	912	Open in IMG/M
3300030902\|Ga0308202_1016988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1097	Open in IMG/M
3300030903\|Ga0308206_1100410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	648	Open in IMG/M
3300030905\|Ga0308200_1149456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	539	Open in IMG/M
3300030988\|Ga0308183_1118409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	622	Open in IMG/M
3300031058\|Ga0308189_10066603	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1052	Open in IMG/M
3300031058\|Ga0308189_10464311	Not Available	538	Open in IMG/M
3300031091\|Ga0308201_10011693	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1638	Open in IMG/M
3300031091\|Ga0308201_10044706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1082	Open in IMG/M
3300031091\|Ga0308201_10050204	Not Available	1042	Open in IMG/M
3300031091\|Ga0308201_10148787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	731	Open in IMG/M
3300031091\|Ga0308201_10371186	Not Available	530	Open in IMG/M
3300031091\|Ga0308201_10432388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	502	Open in IMG/M
3300031092\|Ga0308204_10014559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1516	Open in IMG/M
3300031092\|Ga0308204_10048717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1021	Open in IMG/M
3300031092\|Ga0308204_10304253	Not Available	535	Open in IMG/M
3300031092\|Ga0308204_10314096	All Organisms → cellular organisms → Bacteria → Terrabacteria group	529	Open in IMG/M
3300031548\|Ga0307408_100298841	Not Available	1348	Open in IMG/M
3300031731\|Ga0307405_10562122	All Organisms → cellular organisms → Bacteria → Terrabacteria group	925	Open in IMG/M
3300031824\|Ga0307413_10388424	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1090	Open in IMG/M
3300031938\|Ga0308175_101293243	All Organisms → cellular organisms → Bacteria → Terrabacteria group	812	Open in IMG/M
3300031995\|Ga0307409_100175484	All Organisms → cellular organisms → Bacteria	1891	Open in IMG/M
3300031995\|Ga0307409_101632954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	673	Open in IMG/M
3300031995\|Ga0307409_101737908	All Organisms → cellular organisms → Bacteria → Terrabacteria group	653	Open in IMG/M
3300032002\|Ga0307416_101456002	Not Available	791	Open in IMG/M
3300032004\|Ga0307414_12113361	Not Available	526	Open in IMG/M
3300032005\|Ga0307411_10462269	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1064	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.00%
Host-Associated	Host-Associated	20.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.19%
Plants	Host-Associated → Plants	20.00%
Aquatic	Environmental → Aquatic	3.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.19%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.19%
Freshwater	Environmental → Aquatic → Freshwater	3.81%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.86%
Phylloplane	Host-Associated → Plants → Phylloplane	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.33%
Sand	Environmental → Terrestrial → Soil → Sand	4.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.86%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.86%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.90%
Ice	Environmental → Aquatic → Freshwater → Ice	1.90%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	62.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.33%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.71%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	4.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.86%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	1.90%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.95%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.95%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.95%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	42.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	8.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.76%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.76%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	2.86%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.86%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.86%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.90%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	1.90%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.95%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.95%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000750	Soil microbial communities from Moab, Utah, sample - Soil Crust Dry out, 3 days (biological replicate A) D5A (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005045	Permafrost microbial communities from Fox Tunnel, Fairbanks, Alaska, USA	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012187	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ448 (21.06)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300017787	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018933	Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 42 hrs v1	Environmental	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028003	Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-2-E_N	Environmental	Open in IMG/M
3300028006	Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-4-E_N	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_23997012	3300000033	Soil	MSMDRNDNVVVVARVRLSLADGSNEEWMVPMELTDDALSFHAAIYPPEGAVVVAVDPLKREGAVRQDLVIARADITTL*
JGI12272J11983_10511052	3300000750	Soil	MGIEMSRDMDENVVIVGRVRFALADGSEEAWLVPMRLTDDALSYHAVVYPPEGAVVVSVDPLKRSAGARQDLVIARADVTTL*
Ga0062593_1020294191	3300004114	Soil	MSVDRDDDVVVVARVRLSLADGSHEEWMVPMKLTDDALSYHAAIFPPEGAVVEAVDPLKRAGATRQDLVIARADITTL*
Ga0071328_1342443	3300005045	Permafrost	MTEERDDVVVVARVRLSLADGSDEEWMVPMQLTGDALSYHAAVFPPEGAVVLSVDPLKREGAIRQDLVIARADIATL*
Ga0058697_101421192	3300005562	Agave	MTDDRDDAVVVARVRISLADGSDEAWMVPMQLTDDALSYHAAVYPPEGAVVSSVDPLKREGASRRDLVVARADVETLQDR*
Ga0075421_1015695092	3300006845	Populus Rhizosphere	MTEDRDAVVVARVRLSLADGSDEEWMVPMALTDDALSYHAAIYPPDGAVVSSVEPLKRVGAVRR
Ga0075430_1009493762	3300006846	Populus Rhizosphere	MSVDRDDDVVVVARVRMSLADGSTEEWMVPMKLTDDALSYHAAIFPPEGAIVVSVDPLKREGATRQDLVIARADITTL*
Ga0075430_1017027011	3300006846	Populus Rhizosphere	DRDDIVVVARVRLSLADGSAEEWMVPMDLTDDALSYHAAIYPPEGAVVSSVEPLKRAGAVRQDLVVARADVETL*
Ga0075420_1006239843	3300006853	Populus Rhizosphere	MGRSAQPRDTGMSVDRDDDVVVVARVRMSLADGSTEEWMVPMKLTDDALSYHAAIFPPEGAIVVSVDPLKREGATRQDLVIARADITTP*
Ga0079217_101724322	3300006876	Agricultural Soil	VDGDDAVVVVARVLLSLSDGSDEAWMVPMELTDDALSYHAVVYPPEGAVIVVVEPLTRPGASRQDLVVARADVATH*
Ga0079215_108650631	3300006894	Agricultural Soil	LNGVAFNPGAEESKMTEHGHDVVVARVRLSLADGAEEEWIVPMELTDDALSYHAAVFPPEGAVVLSVNPSKREGAVRQDLVVARADIASIQDR*
Ga0079216_100106982	3300006918	Agricultural Soil	MSVDGDDAVVVVARVRLSLADGSDEAWMVPMELTDDALSYHAVVYPPEGAVIVGVEPLARPGASRQDLVVARADVATH*
Ga0079218_118942732	3300007004	Agricultural Soil	MTEDRNDVVVVARVRLSLADGSDEEWMVPMDLTDDALSYHAAVYPPEGAVVLTVDPLKRESALREDLVVARADVETLQDR*
Ga0105679_103775502	3300007790	Soil	MSEDRDDDVVVVARVRLSLQDGSDEEWMVPMKLTDDALSYHAAIFPPEGAVVVSVDPLKREVATGRDLVIARADITTL*
Ga0105679_108136712	3300007790	Soil	MMPVRISADSAEYPDSAQARDTGMSVAWDDDVVVVARVRLSLADGSAEEWMVPMKLTDDALSYHAAIFPPEGAVVVSVDPLKRDDSSRQDLVIARADITTL*
Ga0105679_109011012	3300007790	Soil	MSVDGGDDLVVVARVQLSLADGSAEQWMVPMKLTDDALSYHAAIYPPEGALIVSVDPLKRPGATRQDLVIARADIVTL*
Ga0126307_100853122	3300009789	Serpentine Soil	MSVDGEADVVVVARVRLSLPDGSHEEWMVPMKLTDDALSYHAAIFPPEGAVVLGVDPLKRNGAAKQDLVIARADITTL*
Ga0126307_104523772	3300009789	Serpentine Soil	HSTQAEELEMTEDRDDVVVVARVRLSLADGSNEVWMVPMELTDDALSYRAAVFPPEGAVVSSVDPLKREGAIRQDLVVARADIETFQDQ*
Ga0126307_111666802	3300009789	Serpentine Soil	MSLDRDDDVVVARVRLSLADGLEEVWMVPMELTDDALSYHAVVYPPEGAVIVAVEPLKREGAARQDLVVARADIATL*
Ga0126307_112184012	3300009789	Serpentine Soil	MSVGRDDDVVVVARVRLSLADGSSEEWMVPMELTDDALSFHAAVFPPEGAVVVGVDPLKREATARQDLVIARADITTL*
Ga0126313_100935682	3300009840	Serpentine Soil	MTEDRDDVVVVARVRLSLADGSNEVWMVPMELTDDALSYRAAVFPPEGAVVSSVDPLKREGAIRQDLVVARADIETFQDQ*
Ga0126313_101645312	3300009840	Serpentine Soil	MSMDRNDNVVVVARVRLSLADGSNEEWMVPMELTDDALSFHAAIYPPEGAVVVAVDPLKREGAVRQDLVVARADITTL*
Ga0126313_106798632	3300009840	Serpentine Soil	MSADRDDVVVVARVRLSLADGLDEVWMVPLELTDDALSYHAVVFPPEGAVIVAVEPVKREGAARQDLVVARADIATL*
Ga0126313_118191382	3300009840	Serpentine Soil	VVARVRLSLADGSNEEWMVPMELTDDALSFHAAIYPPEGAVVVAVDPLKREGAVRQDLVIARADITTL*
Ga0126305_102091822	3300010036	Serpentine Soil	VVARVRLSLADGSNEEWMVPMELTDDALSFHAAIYPPEGAVVVAVDPLKREGAVRQDLVVARADITTL*
Ga0126305_103563772	3300010036	Serpentine Soil	MSVEKDDGVVVVARVRLSLADGLDEVWLVPMELTDDALSYHAAVYPPEGAVIVAVEPVKREGAVRQDLVVARADIATL*
Ga0126305_111912121	3300010036	Serpentine Soil	MTEDRDDVVVVARVRLSLADGSNEVWMVPMELTDDALSYRAAVYPPEGAVVSSVDPLKREGADRQDLVVARADIEALQDQ*
Ga0126304_101613031	3300010037	Serpentine Soil	MSMDRNDNVVVVARVRLSLADGSNEEWMVPMELTDDALSFHAAIYPPEGAVVVAVDPLKREGSVRQDLVIARADITTL*
Ga0126304_104700711	3300010037	Serpentine Soil	MRSTRSEETEMIEDKDDVVVVARVRLALADGSDEEWMVPMDLTDDALSYHAAIYPPEGAVVSSVEPLKRAGAVRQDLVVARADVETR*
Ga0126304_111214661	3300010037	Serpentine Soil	DVVVARVRLSLADGLEEVWMVPMELTDDALSYHAAVYPPEGAVIVAVEPLKREGTARQDLVVARADIATL*
Ga0126315_102399212	3300010038	Serpentine Soil	MSVDSDDDVVVARVRLSLADGSHEEWMVPMKLTDDALSYHAAIFPPEGAVLVSVDPLKREGATRQDLVIARADITSL*
Ga0126315_103268822	3300010038	Serpentine Soil	MSLDRDDDVVVVARVRLSLADGLEEVWMVPMEVTDDALSYHAAVYPPEGAVIVAVEPLKREGAARQDLVIARADIATL*
Ga0126315_103424802	3300010038	Serpentine Soil	VVARVQLALADGSYEEWMVPMELTDDALSYHAAIFPPEGAVVVGVDPLKREATARLDLVIARADITTL*
Ga0126315_110214192	3300010038	Serpentine Soil	MSADMDDDIVVVARVRLSLADGSNEEWMVPMQLTDDALSYHAVVYPPEGAVVVGVDPLKREGGLRQDLVIARADVATL*
Ga0126309_101521492	3300010039	Serpentine Soil	MTEDRDVVVVVARVRLSLADGSDEVWMVPMELTDDALSYRAAVYPPEGAVILSVDPLKREGAIRQDIVVARADIATL*
Ga0126309_108393612	3300010039	Serpentine Soil	MSVDRDDNIVVVARVRLSLADGLDEVWMVPMELTDDALSYHAVVYPPEGAVVVAVDPLKREGTVRQDLVVARADITTL*
Ga0126308_100235796	3300010040	Serpentine Soil	MDKNDNVVVARVRLSLADGSNEEWMVPMELTDDALSFHAAIYPPEGAVVVAVDPLKREGAVRQDLVIARADITTL*
Ga0126308_102492172	3300010040	Serpentine Soil	LTQAEELEMTEDRDDVVVIARVRLSLADGSNEEWMVPMELTDDALSYRATVFPPEGAVIASVDPLKREGAIRQDLVVARADIEALQDQ*
Ga0126312_101446512	3300010041	Serpentine Soil	MSADRDDVVVVARVRLSLADGLDEVWMVPLELTDDALSYHAVVYPPEGAVIVAVEPVKREGAARQDLVVARADIATL*
Ga0126314_101064573	3300010042	Serpentine Soil	MTEDRDDVVVVARVRLSLADGSNEVWMVPMELTDDALSYRAAVFPPEGAVVSSVDPLRREGAVRQDLVVARADIEALQDQ*
Ga0126314_109112432	3300010042	Serpentine Soil	MSVDRDDDVVVVARVRLSLADGTHEEWMVPMKLTDDALSYHAAIFPPEGAVVEVVDPLKRAGATRQDLVIARADITTL*
Ga0126310_100207225	3300010044	Serpentine Soil	MSVDRDDDVVVVARVRLSLADGSHEEWMVPMKLTDDALSYHAAIFPQEGAVVEAVDPLKRASATRQDLVIARADITTL*
Ga0126310_100481272	3300010044	Serpentine Soil	MGVGSDDIVVVARVRLTLDDGSHEEWMVPMELTDDALSYHAAIFPPEGAVVLGVDPLKREIALKQDLVIARADITTL*
Ga0126310_100653762	3300010044	Serpentine Soil	MGRSAQAGDTGMSVDSDDDVVVARVRLSLADGSREEWMVPMKLTDDALSYHAAIFPPEGAVVVSVDPLKREGATRQDLVIARADIISL*
Ga0126310_103686691	3300010044	Serpentine Soil	ISVDGEADVVVVARVRLSLPDGSHEEWMVPMKLTDDALSYHAAIFPPEGAVVLSVDPLKRNGAAKQDLVIARADITTL*
Ga0126310_105152372	3300010044	Serpentine Soil	MGIDRNDDVVVVARVRLSLADGSDEEWMVPMELTDDALSYHAAIYPPEGAVVVAVDPLKREGAVRRDLVIARADITTL*
Ga0126310_105612632	3300010044	Serpentine Soil	VIGDGALGPGREIGMSVDREDVVVVARVRLSLADGSHEEWMVPMKLTDDALSYQAAIFPPEGAVVLGVDPLKREGATRQDLVIARADITTL*
Ga0126310_117852951	3300010044	Serpentine Soil	VVVVARVRLSLADGLDEVWLVPMELTDDALSYHAAVYPPEGAVVVAVDPLKREAAARQDLVVARADIATL*
Ga0126311_104924281	3300010045	Serpentine Soil	GMSVDSDDDVVVARVRLSLADGSHEEWMVPMKLTDDALSYHAAIFPPEGAVLVSVDPLKREGATRQDLVIARADITSL*
Ga0126311_108710932	3300010045	Serpentine Soil	LTQAEELEMTEDRDDVVVIARVRLSLADGSNEEWMVPMELTDDALSYRATVFPPEGAVIASVDPLKREGANRQDLVVARADVEALQDQ*
Ga0126311_109146791	3300010045	Serpentine Soil	MGVGSDDIVVVARVRLTLDDGSHEEWMVPMELTDDALSYHAAIFPPEGAVVLGVDPLKREIALKQDLVIAR
Ga0126311_109786322	3300010045	Serpentine Soil	MSLDRDDDVVVARVRLSLADGLEEVWMVPMELTDDALSYHAVVYPPEGAVIVAVEPLKREGTARQDLVVARADIATL*
Ga0126311_110908072	3300010045	Serpentine Soil	MSMDRNDDVVVVARVRLSLADGSNEEWMVPMELTDDALSFHAAIYPPEGAVVVAVDPLKREGAVRQDLVVARADITTL*
Ga0126311_116512621	3300010045	Serpentine Soil	MGHPAQAGDTGMSVDRDDDIVVVARVRLSLADGSHEEWMVPMKLTDDALSYHAAIFPPEGAVVVGVDPLKREGTTRQDLVIARADITTL*
Ga0126311_119110792	3300010045	Serpentine Soil	RDDGVIVVARVRLSLADGLDEVWLVPMELTDDALSYHAAVYPPEGAVIVAVEPVKREGAVRQDLVVARADIATL*
Ga0126306_101229552	3300010166	Serpentine Soil	MSENSDDVVVVARVRLSLADGSGEEWMVPMQLTDDALSYHAAVYPPEGAVVSSVDPLKREASIRHDLVVARADIETLQDR*
Ga0126306_101817301	3300010166	Serpentine Soil	RLSLADGSNEEWMVPMELTDDALSFHAAIYPPEGAVVVAVDPLKREGAVRQDLVIARADITTL*
Ga0126306_104420862	3300010166	Serpentine Soil	MRSTRSEETEMIEDRDDVVVVARVRLALADGSDEEWMVPMDLTDDALSYHAAIYPPEGAVVSSVEPLKRAGGVRQDLVVARADVETR*
Ga0126306_105948731	3300010166	Serpentine Soil	MSQTSDEAIAVVGRVRFALADGSEEAWLVPMRLTDDALSYHAVVYPPEGAVVVSLEPLKRRETQRRDLVIARADVTLL*
Ga0126306_109719652	3300010166	Serpentine Soil	MTEDRDVAVVVARVRLSLADGSDEVWMVPMELTDDALSYRAAVYPPEGAVILSVDPLKREGAIRQDIVVARADIATL*
Ga0126306_111843451	3300010166	Serpentine Soil	MSLDRDDDVVVARVRLSLADGLEEVWMVPMELTDDALSYHAVVYPPEGAVIVAVEPLKREGAARQDLV
Ga0126317_104208692	3300011332	Soil	MSMDRNDNVVVVARVRLSLADGSNEEWMVPMELTDDALSFHAAIYPPDGAVVVAVDPLKREGDVRQDLVIARADITTL*
Ga0126317_106324511	3300011332	Soil	MSADRDDVVVVARVRLSLADGLDEVWMVPLELTDDALSYHAVVYPPEGAVIVAVEPVKREGAVRQDLVVARA
Ga0136622_104663022	3300012187	Polar Desert Sand	MSHDVDEDVVIVARVRFALADGNEEVWLAPMRLTDDALSYHVAVYPPEGAVVVSLEPLKRHTNTRQDLVIARADVTTL*
Ga0150985_1010601361	3300012212	Avena Fatua Rhizosphere	MTVADDIAEDSVVIARVHVTLGDGNDEVWMVPMELTDDALSYRARIYPPAGAVIVSVEPLQRRRQIEQEIVVGRADFAPQ*
Ga0150985_1019710862	3300012212	Avena Fatua Rhizosphere	MSDDRDEFVVVARVRLSLADGSHEEWMVPMELTDDALSYHAAVYPPEGAVVSSMDPLKRAAAIRQDLVIARADVATL*
Ga0150985_1170516562	3300012212	Avena Fatua Rhizosphere	VHRNDDVVVVARVRLSLADGSDEEWMVPMLLTDDALSYHAAVYPPEGAVITSVDALTREGAARRDLVIARADIATL*
Ga0150984_1029111832	3300012469	Avena Fatua Rhizosphere	MTVADDIAEDSVVIARVHVTLGDGNNEVWMVPMELTDDALSYRARIYPPAGAVIVSVEPLQRRRQIEQEIVVGRADTIPQ*
Ga0150984_1150658571	3300012469	Avena Fatua Rhizosphere	MSVDRDDDVVVVARVRLSLADGSHEEWMVPMKLTDDALSYHAAIFPPEGAVVEAVDPLKRAGASRQDLVIARADITTL*
Ga0150984_1232635202	3300012469	Avena Fatua Rhizosphere	MTDDRDEFVVVARVRLSLADGSHEEWMVPMELTDDALSYHAAVYPPEGAVVSSMDPLKRAAAIRQDLVIARADVATL*
Ga0183260_103255132	3300017787	Polar Desert Sand	MSHDVDEDVVIVARVRFALADGNEEVWLAPMRLTDDALSYHVAVYPPEGAVVVSLEPLKRHTNTRQDLVIARADVTTL
Ga0190265_136638491	3300018422	Soil	MSENRDDVVVVARVRLSLADGSGEEWMVPMELTDDALSYHAAVYPPEGAVVSSVDPLKREASIRHDLVVARAV
Ga0190275_105004401	3300018432	Soil	MDEDIVIVARVRIALADGNEEHWLVPARLTDDALSYQVEIYPPEGAVVVSMEPLKRPASVRQDLVISRADVTTL
Ga0190268_102592971	3300018466	Soil	MLRSTQAGTTEMSVGRDDDVVVVARVRLSLADGSSEEWMVPMELTDDALSFHAAVFPPEGAVVVSVDPLKREGATRQDLVIARADIATL
Ga0193614_10269573	3300018933	Soil	MDENVVIVGRVRFALADGSEEAWLVPMRLTDDALSYHAVVYPPEGAVVVSVDPLKRSAAARQDLVIARADVTTL
Ga0209485_10520742	3300027691	Agricultural Soil	MSVDGDDAVVVVARVLLSLADGSDEAWMVPMELTDDALSYHAVVYPPEGAVIVGVEPLARPGASRQDLVVARADVATH
Ga0209382_122614241	3300027909	Populus Rhizosphere	MTEDRDAVVVARVRLSLADGSDEEWMVPMALTDDALSYHAAIYPPEGAVVSSVEPLKRVGAVRRD
Ga0247707_10111512	3300028003	Soil	MSVDMDDDVVVVARVRLSLANGSGEEWMVPMQLTDDALSYHAVVYPPEGAVVVAVDPLKREGAARQDLVVARADVATL
Ga0247717_10262332	3300028006	Soil	MSVDMDDDVVVVARVRLSLANGSGEEWMVPMQLTDDALSYHAVVYPPEGAVVVAVDPLKREGAARQDLVVAKADVATL
Ga0308202_10169882	3300030902	Soil	MSLDRDDDVVVVARVRLSLADGSHEEWMVPMKLTDDALSYHAAIFPPEGAVIVAVDPLKRAGATRQDLVIARADITTL
Ga0308206_11004101	3300030903	Soil	MTEDRDDVVVIARVRLSLADGSNEEWMVPMELTDDALSYRATVFPPEGAVIASVDPLKREGAIRQDLVVARADIEALQDQ
Ga0308200_11494562	3300030905	Soil	MGRSALAGDTGMSVDRVDDVVVVARVRLSLADGSHEEWMVPMKLTDDALSYHAAIFPPEGAVIVAVDPLKRAGATRQDLVIARADITTL
Ga0308183_11184091	3300030988	Soil	MSVDSDDDDVVVARVRLSLADGSNEEWMVPMKLTDDALSYHAAIFPPEGAVVLGVDPLKRNGAAKQDLVIARADITTL
Ga0308189_100666032	3300031058	Soil	MGRSAQAGDTGMSVDRDDDVVVVARVRLSLADGSHEEWMVPMKLTDDALSYHAAIFPPEGAVIVAVDPLKRAGATRQDLVIARADITTL
Ga0308189_104643111	3300031058	Soil	MRCGGAEMTEDRDEVVVVARVRLSLADGSREEWMVPMQLTDDALSYHAAVYPPEGAVVSSVEPLKRDGAIRQDLVVARADVTAL
Ga0308201_100116932	3300031091	Soil	MSVDRDDDVVVVARVRLSLADGSNEEWMVPMQQTDDALSYHAAVYPSEGAVVVGVDPLKREGAARQDLVIARADIATL
Ga0308201_100447062	3300031091	Soil	MVIGRSAQAGDTGMSLDRDDDVVVVARVRLSLADGSHEEWMVPMKLTDDALSYHAAIFPPEGAVVEAVDPLKRAGANRQDLVIARADITTL
Ga0308201_100502042	3300031091	Soil	VHRNDDVVVVARVRLSLADGTDEEWMVPMLLTDDALSYHAAVYPPEGAVITSVDALKREGAARRDLVIARADIATL
Ga0308201_101487872	3300031091	Soil	VPCGGTEMTEDRDEVVVVARMRLSLADGSHEEWMVPMQLTDDALSYHAAVYPPEGAVVSSVEPLKRDGTFRQDLVVARADVATL
Ga0308201_103711861	3300031091	Soil	MTDDSGEVVVVARVRLLLADGSPVEWMVPMELTDDALSYHAAVYPPEGAVVSSVDPLKREGATRQDLVVARADVATLQNQ
Ga0308201_104323881	3300031091	Soil	DDVVVVARVRLSLADGSDEEWMVPMELTDDALSYHAAIYPPEGAVVVAVDPLKREGAVRRDLVIARADITTL
Ga0308204_100145592	3300031092	Soil	MTDDSGEVVVVARVRLLLADGSHEEWMVPMELTDDALSYHAAVYPPEGAVVSSVDPLKREGATRQDLVVARADVATLQNQ
Ga0308204_100487172	3300031092	Soil	MTEDRDDVVVIARVRLSLADGSNEEWMVPMELTDDALSYWATVFPPEGAVIASVDPLKREGAIRQDLVVARADIEALQDQ
Ga0308204_103042531	3300031092	Soil	MSVDGEADVVVVARVRLSLPDGSHEEWMVPMKLTDDALSYHAAIFPPEGAVVLGVDPLKRNGAAKQDLVIARADITTL
Ga0308204_103140961	3300031092	Soil	ARVRLSLQDGSDEEWMVPMKLTDDALSYHAAIFPPDGAVVVSVDPLKREGAIRQDLVIARADITSL
Ga0307408_1002988411	3300031548	Rhizosphere	MSENRDDVVVVARVRLSLADGSGEEWMVPMQLTDDALSYHAAVYPPEGAVVSSVDPLKREASIRHDLVVARADIETLQDR
Ga0307405_105621222	3300031731	Rhizosphere	MSENRDDVVVVARVRLSLADGSGEEWMVPMQLTDDALSYHAAVYPPEGAVVSSVDPLKREASIRHDLVVARADIETLHR
Ga0307413_103884242	3300031824	Rhizosphere	MTEDRDDAVVVARVRLSLADGLHEEWMVPMELTDDALSYHAAVYPPEGAVVSSVDFLKREGALRRDLVVARADVATL
Ga0308175_1012932432	3300031938	Soil	MTEDSDEVVVVARVRLSLADGSHEEWMVPMQLTDDALSYHAAAYPPEGAVVSGVDFLKRAGALRRDLVVARADVATL
Ga0307409_1001754841	3300031995	Rhizosphere	WEVESEMTEDRDEVVVVARVRLSLADGLHEEWMVPMELTDDALSYHAAVYPPEGAVVSGVDFLKREGALRRDLVVARADVATL
Ga0307409_1016329542	3300031995	Rhizosphere	MDKNDNVVVARVRLSLADGSNEEWMVPMELTDDALSFHAAIYPPEGAVVVAVDPLKREGAVRRDLVIARADITTL
Ga0307409_1017379081	3300031995	Rhizosphere	MSVDRDDEVVVVARVRLSLADGSAEEWMVPMKLSDDALSYHAVIFPPEGAVVVGVDPLKREGAARQDLVIARADITTL
Ga0307416_1014560021	3300032002	Rhizosphere	MGIDRNDDVVVVARVRLSLADGSDEEWMVPMELTDDALSYHAAIYPPEGAVVVAVDPLKREGAVRRDLVIARADITTL
Ga0307414_121133612	3300032004	Rhizosphere	MTEDRDEVVVVARVRLSLADGLHEEWMVPMELTDDALSYHAAVYPPEGAVVSGVDFLKREGALRRDLVVARADVATL
Ga0307411_104622691	3300032005	Rhizosphere	EDRDEVVVVARVRLSLADGLHEEWMVPMELTDDALSYHAAVYPPEGAVVSSVDFLKREGALRRDLVVARADVATL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095087

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences