Metagenome / Metatranscriptome Family F095143

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095143
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	74 residues
Representative Sequence	MMRFLLGALAGALAMWYWGDDIRDYIENRTRDARGRAVDTLQSVETKAGEMLDRAKEQVSSTLQAGQDAIRPRIS
Number of Associated Samples	82
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.33 %
% of genes near scaffold ends (potentially truncated)	34.29 %
% of genes from short scaffolds (< 2000 bps)	77.14 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.429 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (29.524 % of family members)
Environment Ontology (ENVO)	Unclassified (49.524 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.857 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 66.99% β-sheet: 0.00% Coil/Unstructured: 33.01%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF01435	Peptidase_M48	25.71
PF03479	PCC	20.95
PF13091	PLDc_2	9.52
PF00149	Metallophos	0.95
PF02770	Acyl-CoA_dh_M	0.95
PF08028	Acyl-CoA_dh_2	0.95
PF01663	Phosphodiest	0.95
PF05359	DUF748	0.95
PF12706	Lactamase_B_2	0.95
PF13683	rve_3	0.95
PF13649	Methyltransf_25	0.95
PF07332	Phage_holin_3_6	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1661	Predicted DNA-binding protein with PD1-like DNA-binding motif, PPC/DUF296 domain	General function prediction only [R]	20.95
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	1.90
COG2982	Uncharacterized conserved protein AsmA involved in outer membrane biogenesis	Cell wall/membrane/envelope biogenesis [M]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.43 %
Unclassified	root	N/A	28.57 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.43 %
Unclassified	root	N/A	28.57 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.43 %
Unclassified	root	N/A	28.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.57 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	19.05 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	12.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.57 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	19.05 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.86 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.57 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	19.05 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.95 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.57 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	19.05 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.95 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.57 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	19.05 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.95 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_10036480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2565	Open in IMG/M
3300000559\|F14TC_100987877	All Organisms → cellular organisms → Bacteria	2418	Open in IMG/M
3300000955\|JGI1027J12803_100551181	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300000956\|JGI10216J12902_102448710	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300004024\|Ga0055436_10029045	All Organisms → cellular organisms → Bacteria	1401	Open in IMG/M
3300004267\|Ga0066396_10018922	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300004281\|Ga0066397_10000959	All Organisms → cellular organisms → Bacteria	2330	Open in IMG/M
3300004281\|Ga0066397_10107345	Not Available	593	Open in IMG/M
3300004633\|Ga0066395_10022278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2535	Open in IMG/M
3300004633\|Ga0066395_10372012	Not Available	799	Open in IMG/M
3300005166\|Ga0066674_10110320	All Organisms → cellular organisms → Bacteria	1282	Open in IMG/M
3300005295\|Ga0065707_10212658	All Organisms → cellular organisms → Bacteria	1258	Open in IMG/M
3300005332\|Ga0066388_100001212	All Organisms → cellular organisms → Bacteria	14152	Open in IMG/M
3300005332\|Ga0066388_105948129	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300005354\|Ga0070675_101526586	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300005363\|Ga0008090_10574472	Not Available	574	Open in IMG/M
3300005406\|Ga0070703_10472343	Not Available	559	Open in IMG/M
3300005437\|Ga0070710_10389687	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300005445\|Ga0070708_100465360	All Organisms → cellular organisms → Bacteria	1193	Open in IMG/M
3300005467\|Ga0070706_102011587	Not Available	523	Open in IMG/M
3300005468\|Ga0070707_100791699	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300005546\|Ga0070696_100361063	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300005549\|Ga0070704_100804148	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300005713\|Ga0066905_100068880	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2266	Open in IMG/M
3300005764\|Ga0066903_104367100	Not Available	755	Open in IMG/M
3300005983\|Ga0081540_1021638	All Organisms → cellular organisms → Bacteria	3820	Open in IMG/M
3300006804\|Ga0079221_10917354	Not Available	645	Open in IMG/M
3300006871\|Ga0075434_100364904	All Organisms → cellular organisms → Bacteria	1465	Open in IMG/M
3300009012\|Ga0066710_101000535	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1290	Open in IMG/M
3300009038\|Ga0099829_11136089	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	647	Open in IMG/M
3300009792\|Ga0126374_10013097	All Organisms → cellular organisms → Bacteria → Proteobacteria	3360	Open in IMG/M
3300009792\|Ga0126374_10609456	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300009792\|Ga0126374_11470582	Not Available	558	Open in IMG/M
3300010043\|Ga0126380_10106748	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1696	Open in IMG/M
3300010043\|Ga0126380_10122443	All Organisms → cellular organisms → Bacteria → Proteobacteria	1610	Open in IMG/M
3300010046\|Ga0126384_10051028	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2854	Open in IMG/M
3300010046\|Ga0126384_10116489	All Organisms → cellular organisms → Bacteria → Proteobacteria	2001	Open in IMG/M
3300010046\|Ga0126384_10318914	All Organisms → cellular organisms → Bacteria	1284	Open in IMG/M
3300010046\|Ga0126384_11163856	Not Available	710	Open in IMG/M
3300010047\|Ga0126382_11857441	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300010048\|Ga0126373_10539977	Not Available	1213	Open in IMG/M
3300010048\|Ga0126373_10590836	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300010048\|Ga0126373_10856423	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300010154\|Ga0127503_10237889	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300010358\|Ga0126370_10810554	Not Available	836	Open in IMG/M
3300010358\|Ga0126370_10969626	Not Available	773	Open in IMG/M
3300010358\|Ga0126370_12415269	Not Available	522	Open in IMG/M
3300010359\|Ga0126376_12652696	Not Available	550	Open in IMG/M
3300010360\|Ga0126372_12366554	Not Available	581	Open in IMG/M
3300010361\|Ga0126378_10209709	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2028	Open in IMG/M
3300010366\|Ga0126379_11270037	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	842	Open in IMG/M
3300010366\|Ga0126379_11579935	Not Available	761	Open in IMG/M
3300010366\|Ga0126379_11806091	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	715	Open in IMG/M
3300010366\|Ga0126379_13239451	Not Available	545	Open in IMG/M
3300010376\|Ga0126381_103606867	Not Available	607	Open in IMG/M
3300010397\|Ga0134124_10794775	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	945	Open in IMG/M
3300010398\|Ga0126383_10442008	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1348	Open in IMG/M
3300012199\|Ga0137383_10838484	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	671	Open in IMG/M
3300012204\|Ga0137374_10008748	All Organisms → cellular organisms → Bacteria	11975	Open in IMG/M
3300012204\|Ga0137374_10023686	All Organisms → cellular organisms → Bacteria → Proteobacteria	6888	Open in IMG/M
3300012210\|Ga0137378_11233222	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	664	Open in IMG/M
3300012358\|Ga0137368_10274325	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1153	Open in IMG/M
3300012362\|Ga0137361_10487587	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1132	Open in IMG/M
3300012390\|Ga0134054_1258091	Not Available	554	Open in IMG/M
3300012397\|Ga0134056_1137648	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300012399\|Ga0134061_1078538	Not Available	535	Open in IMG/M
3300012402\|Ga0134059_1277109	Not Available	509	Open in IMG/M
3300012922\|Ga0137394_10252963	All Organisms → cellular organisms → Bacteria → Proteobacteria	1506	Open in IMG/M
3300012923\|Ga0137359_10504893	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1067	Open in IMG/M
3300012948\|Ga0126375_10079002	All Organisms → cellular organisms → Bacteria	1876	Open in IMG/M
3300012971\|Ga0126369_11874550	Not Available	688	Open in IMG/M
3300012971\|Ga0126369_12655856	Not Available	585	Open in IMG/M
3300012972\|Ga0134077_10505582	Not Available	536	Open in IMG/M
3300014884\|Ga0180104_1024232	All Organisms → cellular organisms → Bacteria	1523	Open in IMG/M
3300014885\|Ga0180063_1092768	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	915	Open in IMG/M
3300016319\|Ga0182033_10029983	All Organisms → cellular organisms → Bacteria	3460	Open in IMG/M
3300016357\|Ga0182032_10187609	All Organisms → cellular organisms → Bacteria	1563	Open in IMG/M
3300016371\|Ga0182034_10319654	All Organisms → cellular organisms → Bacteria	1251	Open in IMG/M
3300021560\|Ga0126371_10634273	All Organisms → cellular organisms → Bacteria	1217	Open in IMG/M
3300021560\|Ga0126371_10783331	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1100	Open in IMG/M
3300021560\|Ga0126371_11674554	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	760	Open in IMG/M
3300025900\|Ga0207710_10738851	Not Available	517	Open in IMG/M
3300025910\|Ga0207684_11151733	Not Available	644	Open in IMG/M
3300025916\|Ga0207663_10122076	All Organisms → cellular organisms → Bacteria → Proteobacteria	1786	Open in IMG/M
3300026035\|Ga0207703_11639643	Not Available	619	Open in IMG/M
3300026088\|Ga0207641_10919029	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300026354\|Ga0257180_1063396	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	534	Open in IMG/M
3300026377\|Ga0257171_1027959	All Organisms → cellular organisms → Bacteria	962	Open in IMG/M
3300027646\|Ga0209466_1002518	All Organisms → cellular organisms → Bacteria	3760	Open in IMG/M
3300027646\|Ga0209466_1009001	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2116	Open in IMG/M
3300027654\|Ga0209799_1004918	All Organisms → cellular organisms → Bacteria	2759	Open in IMG/M
3300027654\|Ga0209799_1033787	Not Available	1136	Open in IMG/M
3300027654\|Ga0209799_1101645	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300027874\|Ga0209465_10013610	All Organisms → cellular organisms → Bacteria	3664	Open in IMG/M
3300031474\|Ga0170818_111633043	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300031640\|Ga0318555_10003546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6057	Open in IMG/M
3300031740\|Ga0307468_101001864	Not Available	735	Open in IMG/M
3300031820\|Ga0307473_10609067	Not Available	755	Open in IMG/M
3300031965\|Ga0326597_10000388	All Organisms → cellular organisms → Bacteria	79818	Open in IMG/M
3300032180\|Ga0307471_100226300	All Organisms → cellular organisms → Bacteria	1900	Open in IMG/M
3300032770\|Ga0335085_10028754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7777	Open in IMG/M
3300032829\|Ga0335070_10020321	All Organisms → cellular organisms → Bacteria → Proteobacteria	7674	Open in IMG/M
3300032897\|Ga0335071_10473178	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1205	Open in IMG/M
3300033004\|Ga0335084_10040534	All Organisms → cellular organisms → Bacteria → Proteobacteria	4788	Open in IMG/M
3300033433\|Ga0326726_10117181	All Organisms → cellular organisms → Bacteria	2401	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.29%
Host-Associated	Host-Associated	5.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.48%
Plants	Host-Associated → Plants	5.71%
Aquatic	Environmental → Aquatic	3.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.52%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.86%
Sediment	Environmental → Aquatic → Sediment	1.90%
Freshwater	Environmental → Aquatic → Freshwater	0.95%
Marine	Environmental → Aquatic → Marine	0.95%
Peat	Environmental → Terrestrial → Peat	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.95%
Loam	Environmental → Terrestrial → Soil → Loam	24.76%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.81%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.90%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.95%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.95%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.95%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	45.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.29%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.95%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.95%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.95%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	29.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	14.29%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.57%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.86%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.90%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.95%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.95%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.95%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.95%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.95%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.95%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.95%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004024	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012390	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012397	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012399	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012402	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300014885	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10D	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026354	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B	Environmental	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_100364803	3300000550	Soil	MMKFLVGAVAGALAMWYWGDELRDYLDNKTRDVRDRAVEKLQTVEEKAGDVLDRAKEQVSSTLQAGQEAIRPRMS*
F14TC_1009878773	3300000559	Soil	MMKFLVGAVAGALAMWYWGDDLRDYLDNKTRDVRDRAVEKLQTVEEKAGDVLDRAKEQVSSTLQAGQEAIRPRMS*
JGI1027J12803_1005511811	3300000955	Soil	MMKFLVGAVAGALAMWYWGDELRDYLDNKTRDVRDQAVEKLQTVEEKAGEVLDRAKEQVSSTLQAGQEAIRPRM
JGI10216J12902_1024487101	3300000956	Soil	MMKFLVGAVAGALAMWYWGDELRDYLDNKTRDVRDRAVEKLQTVEEKAGDVLDRAKEHVSSTLQAGQEAIRPRMS*
Ga0055436_100290452	3300004024	Natural And Restored Wetlands	MTRFILGALVGALAMWCWGDDIRGYIDSKTRHARGRAVETLQSMEERAGDVLDRTKEQVSSTLQVGQDAIRPRMS*
Ga0066396_100189222	3300004267	Tropical Forest Soil	MTRFLLGALAGAFVMWYWGDDIRDYLESRTRDVRGRAVDTLQSVETRAGEVLDRAKDQVSSTLQAGQDAIRPRVS*
Ga0066397_100009591	3300004281	Tropical Forest Soil	MMRFLLGALAGALAMWYWGDDIRDYIENRTRDARGRAVDTLQSVDTKAGEMLDRAKEQVSSTLQAGQDAIRPRIS*
Ga0066397_101073452	3300004281	Tropical Forest Soil	MMRFLLGALAGALAMWYWGDDIREYLESRTRDVRGRAVDTLQSVETKAGEVLDRAKEQVTSTLQAGQDAIRPRIS*
Ga0066395_100222781	3300004633	Tropical Forest Soil	MMRFLLGALAGALAMWYWGDDIRDYIENRTRDARGRAVDTLQSVETKAGEMLDRAKEQVSSTLQAGQDAIRPRIS*
Ga0066395_103720121	3300004633	Tropical Forest Soil	MMRFLLGALAGALAMWYWGDDIREYLESRTRDVRGRAVDTLQSVETKAGEVLDRAKDQVTSTLQAGQDAIRPRIS*
Ga0066674_101103202	3300005166	Soil	MMRFLVGAVVGALAMWYWGDDLRDYLDNKTRDVRDRAVEKLQTVEEKASDVLDRAKEQVSSTLQAGQEAIRPRMS*
Ga0065707_102126582	3300005295	Switchgrass Rhizosphere	MMKFLVGAVAGALAMWYWGDDLRDYLDNRTRDVRARAVEKLQTVEEKAGDVLDRAKEQVSSTLQAGQEAIRPRMS*
Ga0066388_10000121212	3300005332	Tropical Forest Soil	MARFVLGALAGAFVMWYWGDGVREYLDSKSRDVRGRAADTLQSVEETAEGVLDRAKEQVSTTLQAGQAAIRPS*
Ga0066388_1059481292	3300005332	Tropical Forest Soil	MMRFLLGALAGALAMWYWGDDIRDYIENRTRDARGRAVDTLQSVDTKAGELLDRAKEQVSSTLQAGQDAIRPRIS*
Ga0070675_1015265861	3300005354	Miscanthus Rhizosphere	MKFLVGVVAGALAMWYWGDELRDYLDNKTRDVRDRAVEKLQTVEEKAGEVLDRAKEQVSSTLQAGQEAIR
Ga0008090_105744722	3300005363	Tropical Rainforest Soil	MTRFLLGALAGALAMWYWGDDIREYLESRTRDVRGRAVDTLQSVETKAGEVLDRAKDQVTSTLQAGQDAIRPRIS*
Ga0070703_104723431	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MMKFLVGAVAGALAMWYWGDELRDYLDNKTRDVRDRAVEKLQTVEEKAGEVLDRAKEQVSSTLQAGQEAIRPRMS*
Ga0070710_103896871	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MMKFLVGVVAGALAMWYWGDELRDYLDNKTRDVRDRAVEKLQTVEEKAGEVLDRAKEQVSSTLQAGQEAIRPRMS*
Ga0070708_1004653602	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MMKFLVGAVVGALAMWYWGDELRDYLDNKTRDVRDRAVEKLQTVEEKAGDVLDRAKEQVSATLQAGQEAIRPRMS*
Ga0070706_1020115871	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MMRFIMGALAGALAMWYWGEDIRDYLDNKTRDVRDKAVEKLQTVEEKAGDVFDRAKKQVSSTLQAGQDAIRPTDELIQPKTRG*
Ga0070707_1007916991	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MMKFLVGAVAGALAMWYWGDELRDYLDNKTRDVRDRAVEKLQTVEEKAGDVLDRAKEQVSATLQAGQEAIRPRMS*
Ga0070696_1003610632	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MMKFLVGALAGALAMWYWGDELRDYLDNKTRDVRDRAVEKLQTVEEKAGEVLDRAKEQVSSTLQAGQEAIRPRMS*
Ga0070704_1008041482	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VAGALAMWYWGDELRDYLDNKTRDVRDRAVEKLQTVEEKAGEVLDRAKEQVSSTLQAGQEAIRPRMS*
Ga0066905_1000688801	3300005713	Tropical Forest Soil	LLGALAGALAMWYWGDDIREYLESRTRDVRGRAVDTLQSVETKAGEVLDRAKEQVTSTLQAGQDAIRPRIS*
Ga0066903_1043671002	3300005764	Tropical Forest Soil	MMRFMLGALAGALAMWYWGDDIRDYLENRTRDARGRAVDTLQSVETRAGEMLDRAKEQVSSTLQAGQDAIRPRIS*
Ga0081540_10216387	3300005983	Tabebuia Heterophylla Rhizosphere	MMRFLLGALAGALAMWYWGDDIRDYIENRTRDARGRAVDTLQSVENKAGEMLDRAKEQVSSTLQAGQDAIRPRIS*
Ga0079221_109173542	3300006804	Agricultural Soil	MMRFMLGALAGALAMWYWGDDIRDYIESRTRDVRGRAVDTLQSVEDKAGEVLDRAKEQVTSTLHAGQEAIRPRIS*
Ga0075434_1003649043	3300006871	Populus Rhizosphere	MMKFLVGAVAGALAMWYWGDDLRDYIDNKTRDVRDRAVEKLQTVEEKAGDVLDRAKEQVTSTLQAGQDAIRPRMS*
Ga0066710_1010005352	3300009012	Grasslands Soil	MLNFIMGALVGGLAVWFWGEELRAYADDKTRDVRDRAVEKLQTVEEKATEALDRAKEHVSSTLQAGQDAIRPRVS
Ga0099829_111360891	3300009038	Vadose Zone Soil	MMKFLIGAVVGALAMWYWGEEVRDYIDAKTRDVRGKAVEKLQTVEEKAGNVLDRAKEQVSSTLQAGQEAIRPRMS*
Ga0126374_100130973	3300009792	Tropical Forest Soil	MTRFVLGALAGAFVMWYWGDGVREYLDSKSRDVRGRAADTLQSVEETAEGVLDRAKEQVSTTLQAGQAAIRPS*
Ga0126374_106094561	3300009792	Tropical Forest Soil	MMRFLLGALAGAFVMWYWGDDIRDYLESRTRDVRGRAVDTLQSVETRAGEVLDRAKDQVSSTLQAGQDAI
Ga0126374_114705822	3300009792	Tropical Forest Soil	MMRFLLGALTGALAMWYWGDDIREYLESRTRDVRGRAVDTLQSVETKAGEVMDRAKEQVTSTLQAGQDAIRPRIS*
Ga0126380_101067482	3300010043	Tropical Forest Soil	MMRFLLGALAGAFVMWYWGDDIRDYLESRTRDVRGRAVDTLQSVETRAGEVLDRAKDQVSSTLQAGQDAIRPRVS*
Ga0126380_101224431	3300010043	Tropical Forest Soil	MTRFVLGALAGALVMWYWGDGVRGYLDSKTRNVRGRAADTLKSVEETAEVVLDRAKEQVSTTLQAGQAAIRPHMS*
Ga0126384_100510283	3300010046	Tropical Forest Soil	MMRFLLGALAGALAMWYWGDDIRDYIENRTRDARGRAVDTLQSVETRAGEMLDRAKEQVSSTLQAGQDAIRPRIS*
Ga0126384_101164891	3300010046	Tropical Forest Soil	PRRRNEMMRFLLGALAGALAMWYWGDDIRDYIENRTRDARGRAVDTLQSVETKAGEMLDRAKEQVSSTLQAGQDAIRPRIS*
Ga0126384_103189143	3300010046	Tropical Forest Soil	MMRFLLGALAGALAMWYWGDDIRDYIENRTRDARGRAVDTLQSVDTKAGEMLDRAKEQVSSTLQAGQDAIRPRI
Ga0126384_111638562	3300010046	Tropical Forest Soil	MMRFLLGALAGAFVMWYWGDDIREYLESRTRDVRGRAVDTLQSVETRAGEVLDRAKDQVTSTLQAGQDAIRPRIS*
Ga0126382_118574411	3300010047	Tropical Forest Soil	GALAMWYWGDDIREYLESRTRDVRGRAVDTLQSVETKAGEVLDRAKEQVTSTLQAGQDAIRPRIS*
Ga0126373_105399772	3300010048	Tropical Forest Soil	MRFLLGALAGALALWYWGDDIRDYIENRTRDARGRAVDTLQSVETRAGEMLDRAKEQVSSTLQAGQDAIRPRIS*
Ga0126373_105908362	3300010048	Tropical Forest Soil	MTRFLLGALAGAFVMWYWGDDIRDYLESRTRDVRGRAVDTLQSVETRAGEVLDRAKDQVSSTLQAGQDAIRPRV*
Ga0126373_108564232	3300010048	Tropical Forest Soil	MMRFMLGALAGALAMWYWGDDIRDYIENRTRDARGRAVDTLQSVETRAGEMLDRAKEQVSSTLQAGQDAIRPRIS*
Ga0127503_102378892	3300010154	Soil	MKFLVGAVAGALAMWYWGDELRDYLDNKTRDVRDRAVEKLQTVEEKAGEVLDRAKEQVSSTLQAGQEAIRPRMS*
Ga0126370_108105542	3300010358	Tropical Forest Soil	LLSIVCSGQLREEEEEMMRFLLGALAGALAMWYWGDDIRDYIENRTRDARGRAVDTLQSVDTKAGEMLDRAKEQVSSTLQAGQDAIRPRIS*
Ga0126370_109696261	3300010358	Tropical Forest Soil	MMRFLLGALAGALAMWYWGDDIRDYIENRTRDARGRAVETLQSVDHKAGEMLDRAKEQVSSTLQAGQDAIRPRIS*
Ga0126370_124152692	3300010358	Tropical Forest Soil	MRFLLGALAGAFVMWYWGDDIRDYLESRTRDVRGRAVDTLQSVETRAGEVLDRAKDQVSSTLQAGQDAIRPRVS*
Ga0126376_126526961	3300010359	Tropical Forest Soil	RFMLGALAGALAMWYWGDDIRDYLENRTRDARGRAVDTLQSVETKAGEMLDRAKEQVSSTLQAGQDAIRPRIS*
Ga0126372_123665541	3300010360	Tropical Forest Soil	AVNHPRRRNEMMRFLLGALAGALAMWYWGDDIRDYIENRTRDARGRAVDTLQSVDTKAGELLDRAKEQVSSTLQAGQDAIRPRIS*
Ga0126378_102097093	3300010361	Tropical Forest Soil	MRFLLGALAGALAMWYWGDDIRDYIENRTRDARGRAVDTLQSVETKAGEMLDRAKEQVSSTLQAGQDAIRPRIS*
Ga0126379_112700371	3300010366	Tropical Forest Soil	PLGELAGALAMWYWGDDIRDYSENRTRDARGRAVDTLQTVETKAGETLDRAKEQVSSTLQAGQDAIRPRIS*
Ga0126379_115799352	3300010366	Tropical Forest Soil	MMRFLLGALAGAFVMWYWGDDIRDYLESRTRDVRGRAVDTLQSVETRAGEVLDRAKDQVTSTLQAGQDAIRP
Ga0126379_118060911	3300010366	Tropical Forest Soil	LAGAFVMWYWGDDIRDYLESRTRDVRGRAVDTLQSVETRAGEVLDRAKNQVSSTLQAGQDAIRPRVS*
Ga0126379_132394512	3300010366	Tropical Forest Soil	MMRFLLGALAGALAMWYWGDDIRDYIENRTRDARGRAVDTLQSVETKAGEMLDRAKEQVSSTLQAGQD
Ga0126381_1036068671	3300010376	Tropical Forest Soil	MMRFLLGALAGAFVMWYWGDDIREYLESRTRDVRGRAVDTLQSVETRAGEVLDRAKDQVTSTLQAGQDAIRPRVS*
Ga0134124_107947752	3300010397	Terrestrial Soil	GALAMWYWGDELRDYLDNKTRDVRDRAVEKLQTVEEKAGEVLDRAKEQVSSTLQAGQEAIRPRMS*
Ga0126383_104420082	3300010398	Tropical Forest Soil	MMRFLLGALAGAFVMWYWGDDIRDYLESRTRDVRGRAVDTLQSVETRTGEVLDRAKDQVSSTL*
Ga0137383_108384842	3300012199	Vadose Zone Soil	MMEDEMMKFLLGAIVGALAMWYWGEEVRDYLDAKTRDVRGKAVEKLQSVEEKAAGALDRAKEQVSSTLQAGQEAIRPRMS*
Ga0137374_100087485	3300012204	Vadose Zone Soil	MNEEDEMMNFLIGAVVGALAMWYWGEEVRDYIDTKTRDVRGKAVEKLQTVEEKAGNVLDRAKEQVSSTLQAGQEAIRPRMS*
Ga0137374_100236864	3300012204	Vadose Zone Soil	MIRFMMGALAGALAMWYWGEDLREYADSKTRGIRDTAVEKLQAVEETAESVLDRTKERVSSTLQAGQDAIRPRMS*
Ga0137378_112332222	3300012210	Vadose Zone Soil	MMEDEMMKFLLGAIVGALAMWYWGEEVRDYLDAKTRDVRGKAVEKLQSVEEKAAGALDRAKEQVSSTLQAGQEAIRPRM
Ga0137368_102743251	3300012358	Vadose Zone Soil	MIRFMMGALAGALAMWYWGEDLREYADSKTRGIRDTAVEKLQAVEETAESVLDRAKERVSSTLQAGQDAIRPRMS*
Ga0137361_104875871	3300012362	Vadose Zone Soil	MMKFLIGAVVGALAMWYWGEEVRDYIDAKTRDVRGKAVEKLQTVEEKAGNVLDRAKEQVSSTLQAGQEAIRP
Ga0134054_12580912	3300012390	Grasslands Soil	MKFLVGAVAGALAMWYWGDDLRDYIDNKTRDVRDRAVEKLQTVEEKAGDVLDRAKEQVSSTLQAGQDAIRPRMS*
Ga0134056_11376481	3300012397	Grasslands Soil	AMWYWGDDLRDYIDNKTRDVRDRAVEKLQTVEEKAGDVLDRAKEQVSSTLQAGQDAIRPRMS*
Ga0134061_10785381	3300012399	Grasslands Soil	DHMMKFLVGAVAGALAMWYWGDDLRDYIDNKTRDVRDRAVEKLQTVEEKAGDVLDRAKEQVSSTLQAGQDAIRPRMS*
Ga0134059_12771091	3300012402	Grasslands Soil	THLTKAEDHMMKFLVGAVAGALAMWYWGDDLRDYIDNKTRDVRDRAVEKLQTVEEKAGDVLDRAKEQVSSTLQAGQDAIRPRMS*
Ga0137394_102529633	3300012922	Vadose Zone Soil	MMKFLVGAAVGALAMWYWCDELRDYLDNKTRDVRDRAVEKLQTVEEKAGDVLDRAKEHVSSTLQAGQDAIRPRMS*
Ga0137359_105048932	3300012923	Vadose Zone Soil	MMKFLIGAVVGALAMWYWGEEVRDYLDAKTRDVRGKAVEKLQRGEGKGGNVLERGRGQVRSTVQAGQEAIRPRMS*
Ga0126375_100790024	3300012948	Tropical Forest Soil	MMRFLLGALAGALAMWYWGDDIREYLESRTRDVRGRAVDTLQSVETKAGEVLDRAKDQVSSTLQAGQDAIRPRVS*
Ga0126369_118745502	3300012971	Tropical Forest Soil	MMRFLLGALAGALAMWYWGDDIRDYIENRTRDARGRAVDTLQSVETRAGEMLDRAKEQVSSTLQAGQD
Ga0126369_126558562	3300012971	Tropical Forest Soil	MMRFMLGALAGALAMWYWGDDIRDYLENRTRDARGRAVDTLQSVETKAGEMLDRAKEQVSSTLQAGQDAIRPRIN*
Ga0134077_105055821	3300012972	Grasslands Soil	MMKFLVGAVAGALAMWYWGDDLRDYIDNKTRDVRDRAVEKLQTVEEKAGDVLDRAKEQVSSTLQAGQDAIRPRMS*
Ga0180104_10242322	3300014884	Soil	MQFMMGALAGALAMWYWGDKIRGYVDSRTRDVRDKAVQKLQAVEERAGDVLDRAKEHVSSTLQAGQEAIRPRMS*
Ga0180063_10927682	3300014885	Soil	MMRFMMGALAGALAMWYWGEEIRGYIDSRARDVRDKAVEKLQTVEERAGDVLDRAKEHVSSTLQAGQDAIRPRMS*
Ga0182033_100299834	3300016319	Soil	GDDIRDYLESRTRDVRGRAVDTLQSVETRAGEVLDRAKDQVSSTLQAGQDAIRPRVS
Ga0182032_101876091	3300016357	Soil	MTRFLLGALAGAFVMWYWGDDIRDYLESRTRDVRGRAVDTLQSVETRAGEVLDRAKDQVSSTL
Ga0182034_103196542	3300016371	Soil	MTRFLLGALAGAFVMWYWGDDIRDYLESRTRDVRGRAVDTLQSVETRPGEVLDRAKHQVSSTLQAGQDAIRPRVS
Ga0126371_106342732	3300021560	Tropical Forest Soil	MMRFLLGALAGALAMWYWGDDIREYLESRTRDVRGRAVDTLQSVETKAGEVLDRAKDQVTSTLQAGQDAIRPRIS
Ga0126371_107833311	3300021560	Tropical Forest Soil	LGALAGALAMWYWGDDIRDYIENRTRDARGRAVDTLQSVETKAGEMLDRAKEQVSSTLQAGQDAIRPRIS
Ga0126371_116745542	3300021560	Tropical Forest Soil	MTRFLLGALAGAFVMWYWGDDIRDYLESRTRDVRGRAVDTLQSVETRAGEVLDRAKDQVSSTLQAGQDAIRPRVS
Ga0207710_107388511	3300025900	Switchgrass Rhizosphere	LNGTSTEDQMMKFLVGVVAGALAMWYWGDELRDYLDNKTRDVRDRAVEKLQTVEEKAGEVLDRAKEQVSSTLQAGQEAIRPRMS
Ga0207684_111517332	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MMRFIMGALAGALAMWYWGEDIRDYLDNKTRDVRDKAVEKLQTVEEKAGDVFDRAKKQVSSTLQAGQDAIRPADELIQPKTRG
Ga0207663_101220762	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MMKFLVGAVAGALAMWYWGDELRDYLDNKTRDVRDRAVEKLQTVEEKAGEVLDRAKEQVSSTLQAGQEAIRPRMS
Ga0207703_116396432	3300026035	Switchgrass Rhizosphere	MMKFLVGAVAGALAMWYWGDELRDYLDNKTRDVRDRAVEKLQTVEEKAGEVLDRAKEQVSSTLQAG
Ga0207641_109190291	3300026088	Switchgrass Rhizosphere	GALAMWYWGDELRDYLDNKTRDVRDRAVEKLQTVEEKAGEVLDRAKEQVSSTLQAGQEAIRPRMS
Ga0257180_10633961	3300026354	Soil	MMKFLIGAVVGALAMWYWGEEVRDYLDAKTRDVRGKAVEKLQTVEEKAGNVLDRAKEQVSSTL
Ga0257171_10279592	3300026377	Soil	MMKFLIGAVVGALAMWYWGEEVRAYIDAKTRDVRGKAVEKLQTVEEKAGNVLDRAKEQVSSTLQAGQEAIRPRMS
Ga0209466_10025184	3300027646	Tropical Forest Soil	MRFLLGALAGALAMWYWGDDIRDYIENRTRDARGRAVDTLQSVDTKAGEMLDRAKEQVSSTLQAGQDAIRPRIS
Ga0209466_10090012	3300027646	Tropical Forest Soil	MMRFLLGALAGALAMWYWGDDIREYLESRTRDVRGRAVDTLQSVETKAGEVLDRAKEQVTSTLQAGQDAIRPRIS
Ga0209799_10049184	3300027654	Tropical Forest Soil	MMRFLLGALAGAFVMWYWGDDIRDYLESRTRDVRGRAVDTLQSVETRAGEVLDRAKDQVSSTLQAGQDAIRPRVS
Ga0209799_10337871	3300027654	Tropical Forest Soil	MMRFLLGALTGALAMWYWGDDIREYLESRTRDVRGRAVDTLQSVETKAGEVMDRAKEQVTSTLQAGQDAIRPRIS
Ga0209799_11016452	3300027654	Tropical Forest Soil	MMRFLLGALAGALAMWYWGDDIRDYIENRTRDARGRAVDTLQSVETRAGEMLDRAKEQVSSTLQAGQDAIRPRIS
Ga0209465_100136102	3300027874	Tropical Forest Soil	MMRFMLGALAGALAMWYWGDDIRDYIENRTRDARGRAVDTLQSVETKAGEMLDRAKEQVSSTLQAGQDAIRPRIS
Ga0170818_1116330431	3300031474	Forest Soil	ALAMWYWGDDLRDYLDNKTRDVRDRAVEKLQTVEEKAGDVLDRAKEQVSSTLQAGQDAIRPRMS
Ga0318555_100035461	3300031640	Soil	FLLGALAGAFVMWYWGDDIRDYLESRTRDVRGRAVDTLQSVETRAGEVLDRAKDQVSSTLQAGQDAIRPRVS
Ga0307468_1010018642	3300031740	Hardwood Forest Soil	MIRILIGALAGALAMWYWGEDVRDYLDSKTRDVRDKTVEKLQTVEDTAGDALDRAKQQVSSVLHAGQDAIRPSPRMS
Ga0307473_106090672	3300031820	Hardwood Forest Soil	MMKFLVGAVVGALAMWYWGDELRDYLDNKTRDVRDRAVEKLQTVEEKAGDVLDRAKEQVSATLQAGQEAIRPRMS
Ga0326597_1000038860	3300031965	Soil	MNHFIMGALAGALAMWYWGEDIRAYVDSRTRDVRDRAVQKLQIVEERAGDVLDRTKEHVSSTLQAGQDAIRPRVS
Ga0307471_1002263004	3300032180	Hardwood Forest Soil	MMKFLVGAVAGALAMWYWGDELRDYLDNKTRDVRDRAVEKLQTVEEKAGDVLDRAKEQVSATLQAGQEAIRPRMS
Ga0335085_100287541	3300032770	Soil	MRQESSIFEEDRAMRGFMLGALAGAVVVWYWRDQVRNYLDSKTRGMRGRAVDTLQSVEHTAEGVLDRAKEQVSTTLQAGQDAIRPRTS
Ga0335070_100203213	3300032829	Soil	MRFLMGALAGALAMWYWGEDIRDYVDSKTRDVRDRAVEKLQSVEEKAGDMLDRTKEQVSSTLQAGQDAIRPRLS
Ga0335071_104731783	3300032897	Soil	LAGALAMWYWGEDIRDYVDSKTRDVRDRAVEKLQSVEEKAGDMLDRTKEQVSSTLQAGQDAIRPRLS
Ga0335084_100405343	3300033004	Soil	MRFLMGVLAGALAMWYWGEDIRDYVDSKTRDVRDRAVEKLQSVEEKAGDMLDRTKEQVSSTLQAGQDAIRPRLS
Ga0326726_101171811	3300033433	Peat Soil	MRFLMGALAGALAMWYWGEDIRNYVDSKTRDVRDRAVEKLQSVEEKAGDMLDRTKEQVSSTLQAGQDAIRPRLS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095143

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences