Metagenome / Metatranscriptome Family F095289

Basic Information
Family ID	F095289
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	40 residues
Representative Sequence	MVSRLQKKEEPRDLAVRHLEEYLETKVRARKSKAGAAKS
Number of Associated Samples	94
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	12.50 %
% of genes near scaffold ends (potentially truncated)	6.67 %
% of genes from short scaffolds (< 2000 bps)	6.67 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Most Common Taxonomy
Group	Unclassified (92.381 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.191 % of family members)
Environment Ontology (ENVO)	Unclassified (29.524 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.095 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Mixed	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.30% β-sheet: 0.00% Coil/Unstructured: 59.70%
Feature Viewer

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Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF03061	4HBT	62.86
PF00440	TetR_N	6.67
PF14539	DUF4442	5.71
PF04055	Radical_SAM	0.95
PF14417	MEDS	0.95
PF00571	CBS	0.95
PF02397	Bac_transf	0.95
PF13620	CarboxypepD_reg	0.95
PF01740	STAS	0.95
PF00109	ketoacyl-synt	0.95
PF02417	Chromate_transp	0.95
PF02321	OEP	0.95
PF00916	Sulfate_transp	0.95
PF12697	Abhydrolase_6	0.95
PF07690	MFS_1	0.95
PF01047	MarR	0.95
PF01545	Cation_efflux	0.95
PF12867	DinB_2	0.95
PF04397	LytTR	0.95
PF13185	GAF_2	0.95
PF00561	Abhydrolase_1	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.90
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.95
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	0.95
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.95
COG2059	Chromate transport protein ChrA	Inorganic ion transport and metabolism [P]	0.95
COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	Cell wall/membrane/envelope biogenesis [M]	0.95
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	0.95
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	0.95
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.95

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
All Organisms	root	All Organisms	7.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
cellular organisms	root	All Organisms → cellular organisms	7.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	7.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.95 %

Scaffold	Taxonomy	Length	IMG/M Link
3300005178\|Ga0066688_10246403	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1143	Open in IMG/M
3300005518\|Ga0070699_100563231	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300012208\|Ga0137376_11357686	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300026331\|Ga0209267_1257545	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300026557\|Ga0179587_10503180	All Organisms → cellular organisms → Bacteria → Acidobacteria	795	Open in IMG/M
3300027908\|Ga0209006_10001575	All Organisms → cellular organisms → Bacteria	20719	Open in IMG/M
3300031962\|Ga0307479_10547937	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300032898\|Ga0335072_10712076	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.19%
Aquatic	Environmental → Aquatic	3.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.33%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.86%
Peat	Environmental → Terrestrial → Peat	1.90%
Freshwater	Environmental → Aquatic → Freshwater	0.95%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.38%
Loam	Environmental → Terrestrial → Soil → Loam	20.00%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.90%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.95%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.95%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.38%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.43%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.67%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.90%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.95%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.95%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.95%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.19%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.57%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.57%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.81%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.81%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.90%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.90%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.95%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.95%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022712	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023056	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS2	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026351	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-B	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027619	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1002528092	3300002245	Forest Soil	MVSRLQKKEEARDFAVRHLEEYLETQVRMRKSKAGADKS*
JGI25388J43891_10740292	3300002909	Grasslands Soil	FMVTRLQRNEEPLNLACHHLEEYLETKVRARKSKGGARNS*
Ga0066674_103526882	3300005166	Soil	FMVTRLQRNEEPLDLACHHLEEYLETKVRARKSKGRARNS*
Ga0066672_102564742	3300005167	Soil	GSIMVSRLQKKEEPRDLAVLHLEEYLESRVRAQKSRLSTV*
Ga0066688_102464031	3300005178	Soil	STLEGSIMVSRLQKKEEPRDLAVLHLEEYLETRVRARKSRGSTA*
Ga0066686_105660351	3300005446	Soil	MVSRLQKKEGPRDLAVRHLEEYLETGVRARKSKAGAAKS*
Ga0066689_109265941	3300005447	Soil	LEGSLMVSRLQRKDDPLDLACRHLEEYLEIKVRARKSKAGASKL*
Ga0070706_1007069343	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	FMVSRLQRNEEPLNLACHHLEEYLETKVRARKPKGGARNS*
Ga0070698_1016192681	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	STLEGSFMVSRLQRNEEPLNLACHHLEEYLETKVRARKPKGGAPNS*
Ga0070699_1005632311	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	TLEGSIMVSRLQKKEEPRDLAVRHLEEYLETKVRSRKSKAGAAKS*
Ga0070732_107967631	3300005542	Surface Soil	QRKDDPLDLACRHLEAYLETKVRARRSKAGVDKS*
Ga0066692_104818943	3300005555	Soil	LEGSLMVSRLQRNGDPLDLACRHLEEYLETKVRARQSKPEVDKS*
Ga0070762_102282063	3300005602	Soil	SRLQKKDEPRDLAIRHLEEYLETAVRARKSKAGAHKP*
Ga0070762_104337161	3300005602	Soil	MIRRLQKKDGPLDLACHHLEEHLETKVRARQSKTGGDNS*
Ga0066903_1035729671	3300005764	Tropical Forest Soil	EGSFMVTRLQRNEEPLNLACDHLEEYLETKIRPRKSKSGARNS*
Ga0070766_106142263	3300005921	Soil	LQKKEEPRDLAVRHLEEYLETRVRAWKAKAGADKS*
Ga0070717_103186423	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MVSRLQRNDEPLDLACRHLEEYLETKVRARQSKGGVGKS*
Ga0079222_117651633	3300006755	Agricultural Soil	LEGSIMIRRLQKKDGPLDLACHHLEEHLETKVRARRSKLGTRK*
Ga0066658_105053961	3300006794	Soil	SSFMLTRLQRDEEPLHLTCPHLEEYLETKVRARKSKGGARNS*
Ga0073928_107522083	3300006893	Iron-Sulfur Acid Spring	LQRNKEPLDLACRHLEEYLETKVRARKSKAGADKS*
Ga0099795_101331721	3300007788	Vadose Zone Soil	SSMLGRLQRKDEPLDLACHHLEEYLEDKVRAQKSNAT*
Ga0099830_103524653	3300009088	Vadose Zone Soil	LQRNGDPLDLACRHLEEYLETKVRARQSKAGEDKS*
Ga0099830_103833583	3300009088	Vadose Zone Soil	RLQKKEEPRDLAVRHLEEYLETKVRARKSKAGAAKS*
Ga0126384_110075493	3300010046	Tropical Forest Soil	FMVTRLQRNEEPLNLACDHLEEYLETKVRARKPKSGARNS*
Ga0126373_103682751	3300010048	Tropical Forest Soil	SFMVTRLQRNEEALNLACHHLEEYLETKVRARKPKGGARNS*
Ga0126373_104902321	3300010048	Tropical Forest Soil	LEGSFMVSRLQRNEEPLNLACHHLEEYLETKVRAQQSKVRADKS*
Ga0134088_1000197612	3300010304	Grasslands Soil	MVSHLQRKDGPLDLACRHLEEYLDTKVRAQESKARGDK*
Ga0134080_102132652	3300010333	Grasslands Soil	SFMVSRLQRNEEPLNLACHHLEEYLETKVRARKSKGGARNS*
Ga0126370_101895923	3300010358	Tropical Forest Soil	EGSFMVTRLQRNEGPLNLACDHLEEYLETKVRARKSKAVVRKS*
Ga0126378_109465563	3300010361	Tropical Forest Soil	LQRNEEALNLACHHLEEYLETKVRARKSKAVVRKS*
Ga0126378_114944392	3300010361	Tropical Forest Soil	FMVTRLQRNEEPLNLACDHLEEYLETKVRARKFKSGARNS*
Ga0126378_117334991	3300010361	Tropical Forest Soil	TRLQRNEEPLNLACDHLEEYLETKVRARKSKSGASNS*
Ga0126381_1010426063	3300010376	Tropical Forest Soil	TLEGSFMVTRLQRNEEPLNLACDHLEEYLETKVRARKSKSGARNS*
Ga0150983_107247721	3300011120	Forest Soil	VSRLQKKEEPRDLAVRHLEEYLETKVRARKSKAGADKP*
Ga0150983_166858962	3300011120	Forest Soil	SIRVSRLQKKEEPRDLAVRHLEEYLETWVRARKSKEGAYKS*
Ga0137392_107094772	3300011269	Vadose Zone Soil	VMIRRLQKKDGPLDLACHHLEEYLETKVRARQAEAGVHKS*
Ga0137388_119810931	3300012189	Vadose Zone Soil	IMVSRLQKKEEPRDLAVRHLEEYLETGVRSRKSKAGATKS*
Ga0137363_105268341	3300012202	Vadose Zone Soil	EGSVMIRRLQKKDGPLDLACHYLEEYLETKVRARQLKAGKDKS*
Ga0137376_113576862	3300012208	Vadose Zone Soil	IASTLEGSFMVSRLQRNEEPLNLACHHLEEYLETKVRARKSKGGARNS*
Ga0137384_105832861	3300012357	Vadose Zone Soil	IMVSRLQKKEEPRDLAVRHLEDYLESRVRGQKSRGSTAKS*
Ga0137360_113923762	3300012361	Vadose Zone Soil	VSRLQKKEGPRDLAVRHLEEYLETGVRSRKSKAGATKS*
Ga0137359_113808821	3300012923	Vadose Zone Soil	MVTRLQRNEEPLNLACHHLEEYLETKVRARTSKGGTRN*
Ga0137359_113969662	3300012923	Vadose Zone Soil	LEGSHMVSRLQRKEEPLDLACCHLEEYLETQVRARKSKARADKS*
Ga0137419_102072763	3300012925	Vadose Zone Soil	TLEGSFMIRRLQKNDGPLDLACHHLEEYLETKVRARQAKAGADKS*
Ga0137416_112978801	3300012927	Vadose Zone Soil	GSIMVSRLQKKEEPRDLAVRHLEEYLETKVRARKSKAGADKS*
Ga0126369_120443302	3300012971	Tropical Forest Soil	FMVSRLQRNEEPLNLACHHLEEYLDTKVRARKSKGGARNS*
Ga0164307_107748071	3300012987	Soil	TLEGSIMVSRLQKKEEPRDLAVRHLEEYLETKVRARKSKAGAAKS*
Ga0137412_100763771	3300015242	Vadose Zone Soil	SMVSRLQRKDEPLDLACHHLEEYLEDKVRTQKSKAT*
Ga0193707_10067494	3300019881	Soil	MVSRLQRNDAPLDLACGHLEEYLEAKVRAQQSRAGVDKS
Ga0193751_11082221	3300019888	Soil	LEGSIMLSRLQKEEEPRDLAVRHLEEYLETKVRARKSKAGADKS
Ga0210399_106144813	3300020581	Soil	MLSRLQKKEEPRDLAVRHLEEYLETGVRARKSKAGAAKS
Ga0210395_114002832	3300020582	Soil	LQKKEEPRDLAVRHLEEYLETKVRARKSKAGAPKS
Ga0215015_100937462	3300021046	Soil	MIRRLQKKDGPLDLACHHLEEHLETKVRARQSKVGARKS
Ga0210388_102699213	3300021181	Soil	LEGSIMVSRLQKKDEARDLAIRHLEEYLETAVRARKSKAGAHQP
Ga0210386_102764331	3300021406	Soil	VSRLQRNKEPLDLACRHLEEYLETKVRARKSRTGADKS
Ga0210386_107054331	3300021406	Soil	SRLQKKDEPLLFACRHLEEYLEMKVRAGSSKRAKRP
Ga0210384_103303651	3300021432	Soil	SRLQKKEEPRDLAVRHLEEYLETKVRARKSKAGASKS
Ga0126371_113306921	3300021560	Tropical Forest Soil	GSFMVTRLQRNEEPLNLACDHLEEYLETKVRARKFKSGARNS
Ga0242656_10316681	3300022525	Soil	LQRNEEPLNLACHHLEEYLETKVRARKPKGGARNS
Ga0212123_101468403	3300022557	Iron-Sulfur Acid Spring	SRLQRKEEPLDLACRHLEEYLETEVRARKSKARADKS
Ga0212123_106144461	3300022557	Iron-Sulfur Acid Spring	LQRNKEPLDLACRHLEEYLETKVRARKSKAGADKS
Ga0242653_10001881	3300022712	Soil	MVSRLQKKEEPRDLAVRHLEEYLETKVRARKSKAGADKP
Ga0242657_11623081	3300022722	Soil	LEGSIMVSRLQKKEEPLDLAVRHLEEYLDTKVRGRKSKAGAGKS
Ga0233357_10269091	3300023056	Soil	ISRLQKKEEPRDLAVRHLEEYLETKVRARKSKAGADKP
Ga0207699_104646751	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	TLEGRIMVSRLQKKEEPRDLAVRHLEEYLDTKVRARKSKAGVGKS
Ga0207684_108519852	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	FMVSRLQRNEEPLNLACHHLEEYLETKVRARKPKGGARNS
Ga0207700_108781562	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	FMLTRLQRNEEPLNLACHHLEEYLETKVRARKSKGGARNS
Ga0209761_11550702	3300026313	Grasslands Soil	MVSHLQRKDGPLDLACRHLEEYLDTKVRAQESKARGDK
Ga0209267_12575452	3300026331	Soil	LIASTLEGSFMVSRLQRNEEPLNLACHHLEEYLETKVRARKLKGGARNS
Ga0257170_10250491	3300026351	Soil	MVTRLQRNEEPLNLACHHLEEYLETKVRARKSKGGARNS
Ga0257181_10879242	3300026499	Soil	TLEGSIMVSRLQKKEEPRDLAVRHLEEYLETGVRSRKSKAGATKS
Ga0209157_12419872	3300026537	Soil	MVSRLQKKEGPRDLAVRHLEEYLETGVHARKSKAGAAKS
Ga0209648_106613792	3300026551	Grasslands Soil	VQRNKEPLDLACHHLEEYLETRVRARKPKAGADKS
Ga0179587_105031801	3300026557	Vadose Zone Soil	STLEGSVMIRRLQKKDGPLDLACDHLEEYLETKVRVRQSKAGVDKS
Ga0209010_10978001	3300027370	Forest Soil	EGSLMVSRLQKKEEPRDLAVRHLEEYLETKVRARKSKAGADKS
Ga0209179_10309191	3300027512	Vadose Zone Soil	SSMLGRLQRKDEPLDLACHHLEEYLEDKVRAQKSNAT
Ga0209735_11225022	3300027562	Forest Soil	RLQRNKEPLDLACRHLEEYLETKVRARKAKAGADKS
Ga0209733_10009221	3300027591	Forest Soil	EGSIMVSRLQKKEEPRDLAVRHLEEYLETKVRARKAKAGADKS
Ga0209330_10009481	3300027619	Forest Soil	LQRNKKPLDLACRHLEEYLETKVRARKLRTGADKP
Ga0209009_11995082	3300027667	Forest Soil	SLMVSRLQRKDHPLDLACHHLEEYLETKVRARQSKAGMHKS
Ga0209773_101233132	3300027829	Bog Forest Soil	GSHMMSRLQKKEEPRDLAARHLEEYLETKVRARKSKARS
Ga0209180_102915253	3300027846	Vadose Zone Soil	TLEGSLMVSRLQRNGDPLDLACHHLEEYLETKVRVPRAKAGADKS
Ga0209380_104672231	3300027889	Soil	RLQKKEEPRDLAVRHLEEYLETRVRAWKAKAGADKS
Ga0209006_1000157514	3300027908	Forest Soil	MVSRLQKKEEARDFAVRHLEEYLETQVRMRKSKAGADKS
Ga0311340_105344334	3300029943	Palsa	IRRLQKKDGPLDLACDHLDEYLEAKVRARRSKAKVDES
Ga0311354_109423271	3300030618	Palsa	SRLQKKEEPRDLAVHHLEEYLETKVRAQKAKAGVHKS
Ga0170818_1137824942	3300031474	Forest Soil	VSRLQKKEEPRHLAVRHLEEYLETKVRSRKSKAGATKS
Ga0318541_103534152	3300031545	Soil	LEGSFMVSRLQRNEEPLNVACHRLEEYLETKVRARKSKGGARNS
Ga0318561_107216971	3300031679	Soil	LEGSFMVTRLQRNEESLNLACDHLEEYLETKVRARKSKSGARNS
Ga0307477_101039251	3300031753	Hardwood Forest Soil	VSRLQRKEEPLDLACRHLEKYLETEVRARKSKAGADKS
Ga0307475_100666551	3300031754	Hardwood Forest Soil	LQKKEEPRDLAVRHLEEYLETNVRSRKSKAGTTKS
Ga0318523_105328551	3300031798	Soil	LEGSFMVSRLQRNEEPLNLACHHLEEYLETKVRARKSKAGARNS
Ga0307478_108427792	3300031823	Hardwood Forest Soil	MVSRLQKKEEPRDLAVRHLEEYLETKVRARKSKAGAAKS
Ga0307478_112054731	3300031823	Hardwood Forest Soil	EGSFMLTRLQRNEEPLNLACHHLEEYLETKVRARKSKGGARNS
Ga0306919_113949681	3300031879	Soil	EGSFMVSRLQRNEEPLNLACHHLEEYLETKVRARKSKAGARNS
Ga0310909_1001177411	3300031947	Soil	EGSFMMTRLQRNEAPLNLACDHLEEYLETKVRARKSKSGARNS
Ga0306926_119109391	3300031954	Soil	SRLQRSEEPLNLACHHLEEYLETKVRAEKSKGGARNS
Ga0306926_125280642	3300031954	Soil	SRLQRNEEPLNLACHHLEEYLETKVRARKSKAGARNS
Ga0307479_105479371	3300031962	Hardwood Forest Soil	LEGSHMVSRLQRKEEPLDLACRHLEKYLETEVRARKSKAGADKS
Ga0318533_107111141	3300032059	Soil	LQRNEEPLNLACDHLEEYLETKVRARKSKSGARNSCAQGIPL
Ga0306924_118969321	3300032076	Soil	LSGLQRQQDPLNLACRHLEEYLETKVRARKQKTGAGRS
Ga0307471_1013492061	3300032180	Hardwood Forest Soil	GSFMVSRLQRNEEPLNLACHHLEEYLETKVCMRKSKSGARNS
Ga0307472_1008891993	3300032205	Hardwood Forest Soil	RLKKNDGPLDLACHHLEEYLETKVRARQAKAGVDKS
Ga0348332_116083752	3300032515	Plant Litter	MVSRLQRNKKPLDLACHHLEEYLETKVRARKSKTGADKS
Ga0335072_107120763	3300032898	Soil	STLEGSLMVSRLQRERNPLDLACRHLEDYLETKVRAPKSKTTMERL

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095289

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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