NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F095317

Metagenome / Metatranscriptome Family F095317

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095317
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 43 residues
Representative Sequence MYNPNNPSNWSWSKAFDEMEKTVNQAELTQQSINHVLNYPGE
Number of Associated Samples 90
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 88.57 %
% of genes from short scaffolds (< 2000 bps) 66.67 %
Associated GOLD sequencing projects 83
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (79.048 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Strait → Unclassified → Seawater
(34.286 % of family members)
Environment Ontology (ENVO) Unclassified
(73.333 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(90.476 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 41.43%    β-sheet: 0.00%    Coil/Unstructured: 58.57%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.50
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF01909NTP_transf_2 3.81
PF13884Peptidase_S74 1.90
PF03382DUF285 0.95
PF00166Cpn10 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG0234Co-chaperonin GroES (HSP10)Posttranslational modification, protein turnover, chaperones [O] 0.95


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A79.05 %
All OrganismsrootAll Organisms20.95 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10283960Not Available503Open in IMG/M
3300000115|DelMOSum2011_c10027672Not Available2562Open in IMG/M
3300000115|DelMOSum2011_c10099517Not Available956Open in IMG/M
3300000116|DelMOSpr2010_c10198743Not Available644Open in IMG/M
3300000117|DelMOWin2010_c10245149Not Available527Open in IMG/M
3300001460|JGI24003J15210_10161916Not Available561Open in IMG/M
3300002231|KVRMV2_100006086All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.2477Open in IMG/M
3300002488|JGI25128J35275_1086345Not Available641Open in IMG/M
3300005239|Ga0073579_1693751Not Available999Open in IMG/M
3300006749|Ga0098042_1009860All Organisms → Viruses → environmental samples → uncultured virus3028Open in IMG/M
3300006916|Ga0070750_10032779All Organisms → Viruses → environmental samples → uncultured virus2577Open in IMG/M
3300006919|Ga0070746_10177511Not Available1025Open in IMG/M
3300006928|Ga0098041_1275917Not Available535Open in IMG/M
3300006990|Ga0098046_1135735Not Available532Open in IMG/M
3300007538|Ga0099851_1117855Not Available1004Open in IMG/M
3300007555|Ga0102817_1005990All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.2865Open in IMG/M
3300007622|Ga0102863_1154615Not Available675Open in IMG/M
3300007972|Ga0105745_1268406Not Available552Open in IMG/M
3300008956|Ga0104261_1028094Not Available682Open in IMG/M
3300009423|Ga0115548_1207475Not Available606Open in IMG/M
3300009495|Ga0115571_1020330All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.3404Open in IMG/M
3300009786|Ga0114999_10620283All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.819Open in IMG/M
3300010153|Ga0098059_1215237Not Available746Open in IMG/M
3300010392|Ga0118731_102588912All Organisms → Viruses → Predicted Viral1264Open in IMG/M
3300010430|Ga0118733_100557810Not Available2277Open in IMG/M
3300011253|Ga0151671_1015982All Organisms → Viruses → Predicted Viral1952Open in IMG/M
3300012920|Ga0160423_10486529Not Available840Open in IMG/M
3300012952|Ga0163180_10355034Not Available1058Open in IMG/M
3300013010|Ga0129327_10016205Not Available3988Open in IMG/M
3300017713|Ga0181391_1065057Not Available845Open in IMG/M
3300017714|Ga0181412_1032249All Organisms → Viruses → Predicted Viral1403Open in IMG/M
3300017714|Ga0181412_1055412Not Available997Open in IMG/M
3300017719|Ga0181390_1004020All Organisms → cellular organisms → Bacteria5791Open in IMG/M
3300017727|Ga0181401_1006418All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.3965Open in IMG/M
3300017742|Ga0181399_1031910Not Available1425Open in IMG/M
3300017744|Ga0181397_1000920Not Available10864Open in IMG/M
3300017745|Ga0181427_1006426Not Available2942Open in IMG/M
3300017745|Ga0181427_1024477Not Available1507Open in IMG/M
3300017746|Ga0181389_1006579All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.4040Open in IMG/M
3300017748|Ga0181393_1164831Not Available547Open in IMG/M
3300017750|Ga0181405_1156878Not Available561Open in IMG/M
3300017753|Ga0181407_1055713Not Available1029Open in IMG/M
3300017755|Ga0181411_1031794Not Available1677Open in IMG/M
3300017756|Ga0181382_1001725Not Available9880Open in IMG/M
3300017756|Ga0181382_1009487All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium3367Open in IMG/M
3300017757|Ga0181420_1003389All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium5727Open in IMG/M
3300017758|Ga0181409_1013515Not Available2691Open in IMG/M
3300017759|Ga0181414_1027650Not Available1539Open in IMG/M
3300017764|Ga0181385_1003991All Organisms → cellular organisms → Bacteria4988Open in IMG/M
3300017765|Ga0181413_1042279Not Available1419Open in IMG/M
3300017765|Ga0181413_1198303Not Available600Open in IMG/M
3300017767|Ga0181406_1016748Not Available2334Open in IMG/M
3300017767|Ga0181406_1021075Not Available2062Open in IMG/M
3300017770|Ga0187217_1081339All Organisms → Viruses → Predicted Viral1112Open in IMG/M
3300017772|Ga0181430_1232885Not Available521Open in IMG/M
3300017776|Ga0181394_1032798Not Available1811Open in IMG/M
3300017779|Ga0181395_1067505Not Available1163Open in IMG/M
3300017783|Ga0181379_1013009All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium3460Open in IMG/M
3300017783|Ga0181379_1053802Not Available1536Open in IMG/M
3300017783|Ga0181379_1341701Not Available504Open in IMG/M
3300019749|Ga0193983_1057558Not Available589Open in IMG/M
3300020247|Ga0211654_1052613Not Available618Open in IMG/M
3300020401|Ga0211617_10375872Not Available589Open in IMG/M
3300020457|Ga0211643_10631022Not Available524Open in IMG/M
3300021085|Ga0206677_10003225All Organisms → Viruses → environmental samples → uncultured marine virus13854Open in IMG/M
3300022057|Ga0212025_1095188Not Available510Open in IMG/M
3300022072|Ga0196889_1098859Not Available533Open in IMG/M
3300022183|Ga0196891_1080702Not Available577Open in IMG/M
3300022200|Ga0196901_1213562Not Available614Open in IMG/M
3300024228|Ga0228633_1043318Not Available1157Open in IMG/M
3300024237|Ga0228653_1105673Not Available599Open in IMG/M
3300024293|Ga0228651_1053413Not Available966Open in IMG/M
3300024294|Ga0228664_1020681Not Available1911Open in IMG/M
3300024316|Ga0228654_1024855Not Available863Open in IMG/M
3300024322|Ga0228656_1052948Not Available903Open in IMG/M
3300024328|Ga0228635_1117313Not Available587Open in IMG/M
3300024508|Ga0228663_1034991Not Available970Open in IMG/M
(restricted) 3300024519|Ga0255046_10363248Not Available683Open in IMG/M
(restricted) 3300024519|Ga0255046_10630193Not Available517Open in IMG/M
3300025070|Ga0208667_1030255Not Available973Open in IMG/M
3300025098|Ga0208434_1069719Not Available732Open in IMG/M
3300025101|Ga0208159_1003112All Organisms → cellular organisms → Bacteria5565Open in IMG/M
3300025103|Ga0208013_1073559Not Available892Open in IMG/M
3300025120|Ga0209535_1013700All Organisms → cellular organisms → Bacteria4391Open in IMG/M
3300025127|Ga0209348_1014999All Organisms → cellular organisms → Bacteria3005Open in IMG/M
3300025127|Ga0209348_1114498Not Available824Open in IMG/M
3300025132|Ga0209232_1030472Not Available2067Open in IMG/M
3300025168|Ga0209337_1309511Not Available566Open in IMG/M
3300025699|Ga0209715_1080436Not Available1264Open in IMG/M
3300025853|Ga0208645_1015417All Organisms → Viruses → environmental samples → uncultured marine virus4427Open in IMG/M
3300026505|Ga0228647_1131418Not Available580Open in IMG/M
3300027790|Ga0209273_10263924Not Available707Open in IMG/M
3300028280|Ga0228646_1057313Not Available964Open in IMG/M
3300028280|Ga0228646_1062372Not Available921Open in IMG/M
3300028391|Ga0233394_1037099Not Available1217Open in IMG/M
3300032277|Ga0316202_10205041Not Available915Open in IMG/M
3300032277|Ga0316202_10405867Not Available637Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater34.29%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine16.19%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater11.43%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous8.57%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine4.76%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.81%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine2.86%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment1.90%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat1.90%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.90%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.90%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment1.90%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment0.95%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.95%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.95%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater0.95%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine0.95%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.95%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.95%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater0.95%
Ocean WaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water0.95%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300002231Marine sediment microbial communities from Santorini caldera mats, Greece - red matEnvironmentalOpen in IMG/M
3300002488Marine viral communities from the Pacific Ocean - ETNP_2_60EnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300006749Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaGEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300006928Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaGEnvironmentalOpen in IMG/M
3300006990Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaGEnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007555Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555EnvironmentalOpen in IMG/M
3300007622Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02EnvironmentalOpen in IMG/M
3300007972Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0umEnvironmentalOpen in IMG/M
3300008956Marine microbial communities from eastern North Pacific Ocean - P8 free-living McLaneEnvironmentalOpen in IMG/M
3300009423Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423EnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300009786Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126EnvironmentalOpen in IMG/M
3300010153Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaGEnvironmentalOpen in IMG/M
3300010392Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385EnvironmentalOpen in IMG/M
3300010430Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samplesEnvironmentalOpen in IMG/M
3300011253Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeateEnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300012952Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 MetagenomeEnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300017713Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11EnvironmentalOpen in IMG/M
3300017714Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15EnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017727Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20EnvironmentalOpen in IMG/M
3300017740Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13EnvironmentalOpen in IMG/M
3300017742Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21EnvironmentalOpen in IMG/M
3300017744Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23EnvironmentalOpen in IMG/M
3300017745Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 50 SPOT_SRF_2014-01-15EnvironmentalOpen in IMG/M
3300017746Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29EnvironmentalOpen in IMG/M
3300017748Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21EnvironmentalOpen in IMG/M
3300017750Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29EnvironmentalOpen in IMG/M
3300017753Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26EnvironmentalOpen in IMG/M
3300017755Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09EnvironmentalOpen in IMG/M
3300017756Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22EnvironmentalOpen in IMG/M
3300017757Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22EnvironmentalOpen in IMG/M
3300017758Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30EnvironmentalOpen in IMG/M
3300017759Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28EnvironmentalOpen in IMG/M
3300017764Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11EnvironmentalOpen in IMG/M
3300017765Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28EnvironmentalOpen in IMG/M
3300017767Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20EnvironmentalOpen in IMG/M
3300017769Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22 (version 2)EnvironmentalOpen in IMG/M
3300017770Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300017779Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16EnvironmentalOpen in IMG/M
3300017783Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10EnvironmentalOpen in IMG/M
3300019749Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BLT_4-5_MGEnvironmentalOpen in IMG/M
3300020247Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)EnvironmentalOpen in IMG/M
3300020378Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)EnvironmentalOpen in IMG/M
3300020401Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)EnvironmentalOpen in IMG/M
3300020457Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300022057Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v2)EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022183Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3)EnvironmentalOpen in IMG/M
3300022200Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300024228Seawater microbial communities from Monterey Bay, California, United States - 41DEnvironmentalOpen in IMG/M
3300024237Seawater microbial communities from Monterey Bay, California, United States - 65DEnvironmentalOpen in IMG/M
3300024293Seawater microbial communities from Monterey Bay, California, United States - 63DEnvironmentalOpen in IMG/M
3300024294Seawater microbial communities from Monterey Bay, California, United States - 78DEnvironmentalOpen in IMG/M
3300024316Seawater microbial communities from Monterey Bay, California, United States - 66DEnvironmentalOpen in IMG/M
3300024322Seawater microbial communities from Monterey Bay, California, United States - 68DEnvironmentalOpen in IMG/M
3300024328Seawater microbial communities from Monterey Bay, California, United States - 44DEnvironmentalOpen in IMG/M
3300024508Seawater microbial communities from Monterey Bay, California, United States - 77DEnvironmentalOpen in IMG/M
3300024519 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_27EnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025098Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025101Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025103Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025127Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025132Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025699Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503 (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300026505Seawater microbial communities from Monterey Bay, California, United States - 59DEnvironmentalOpen in IMG/M
3300027790Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.1 (SPAdes)EnvironmentalOpen in IMG/M
3300027859Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300028280Seawater microbial communities from Monterey Bay, California, United States - 58DEnvironmentalOpen in IMG/M
3300028391Seawater microbial communities from Monterey Bay, California, United States - 24DEnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1028396013300000101MarineMYNPNNPSNWSWSKAFQEVENTANQAELTQQCINHVLNYPGEANGVYM
DelMOSum2011_1002767273300000115MarineMYNVNNPSNWSWSKAFDEMNQTVNQAELTQQCINHVLN
DelMOSum2011_1009951733300000115MarineMYNPNNPSNWSWSKAFDEMNQTVNQAELTQQCINHVLNYPGEANG
DelMOSpr2010_1019874313300000116MarineMYNPNNPSNWSWSKAFDEMNQTVNQAELTQQCINHVLNYPGEAN
DelMOWin2010_1024514923300000117MarineMYNVNNPSNWSWSKAFDEMEKTVNQAELTQQCINHVLNY
JGI24003J15210_1016191623300001460MarineMYNPNSPSNWSWSKAFQEVENTVNQAELTQQSINHVLNYPGEANGVFMT
KVRMV2_10000608683300002231Marine SedimentMYNPNNPSNWSWSKAFAEMEKTVNQAELTQQSINHVINYSGEANGVFMTLS
KVRMV2_10055881713300002231Marine SedimentMYNPNNPSNWSWSKAFAEMEKTVNQAEMTQQCIMILGNSETTEYKN
JGI25128J35275_108634523300002488MarineMYNVNNPSNWSWSKAFDEMNKTVNQAELTQQCINHVLNYPGEANGV
Ga0073579_169375113300005239MarineMYNPNNPSNWSWSKAFDEMNQTVNQAELTQQCINHVLNYPGEANGVFMTLNKLNKMMFMTTNQIL*
Ga0098042_100986013300006749MarineMYNINNPSNWSWSKAFDEMEKTVNQAELTQQIINHLLNYP
Ga0070750_1003277943300006916AqueousMYNPNNPSNWSWSKAFDEMNQTVNQAELTQQCINHVLN
Ga0070746_1017751133300006919AqueousMYNVNNPSNWSWSKAFAEMDKTVHEAEMTQQSIMIIGN
Ga0098041_127591713300006928MarineMYNPNNPSNWSWSKAFDEMEKTVNISELTQQIINHLADYPGESHGEYVKLSK
Ga0098046_113573523300006990MarineMYNVNNPSNWSWSKAFDEMNKTVNQAELTQQCINHVLNYP
Ga0099851_111785513300007538AqueousMYNPNNPSNWSWSKAFSEMEKTVNQAELTQQCINHVLNY
Ga0102817_100599063300007555EstuarineMYNPNSPSNWSWKKAFDEMDKYVHQTEMTQQSINHVLNYPGEANGVFMS
Ga0102863_115461533300007622EstuarineMYNPNSPSNWSWKKAFDEMNKYVNQTELTQQSINHVLNYPGEANGVFMSL
Ga0105745_126840623300007972Estuary WaterMYNTNNPSNWSWSKAFDEMNKTVNQAELTQQSINHVLNYPGEANGVFM
Ga0104261_102809413300008956Ocean WaterMYNPNNPSNWSWQKAFDEMDKYVHQTEMTQQSINHVLNYPGE
Ga0115548_120747523300009423Pelagic MarineMYNPNNPSNWSWSKAFDEMEKTVNQAELTQQSINHVLNYPGE
Ga0115571_102033013300009495Pelagic MarineMYNPNNPSNWSWSKAFDEMNQTVNQAELTQQCINHVLNYPGEANGVFM
Ga0114999_1062028313300009786MarineMYNQNSPSNWSWSKAFDEMEKTVNQAEMTQQCIMIHGNS
Ga0098059_121523713300010153MarineMYNINNPSNWSRSKAFDEMNKTVHESEMTQQCINHVLNYPGEANG
Ga0118731_10258891213300010392MarineMYNVNNPSNWSWSKAFDEMNQTVNQAELTQQCINHVLNYPGEANGV
Ga0118733_10055781013300010430Marine SedimentMYNVNNPSNWSWSKAFDEMNQTVNQAELTQQCINHVLNYPGEAN
Ga0151671_101598213300011253MarineMYNPNNPSNWSWSKAFAEMEKNVNQTELTQQSINHVLNYPGEAKEVKQLDIK*
Ga0160423_1048652943300012920Surface SeawaterMSYNPNNPSNWSWSKAFDEMNKTVNQAELTQQCINH
Ga0163180_1035503443300012952SeawaterMYNPNNPSNWSWSKAFAEMDKTVHQAEMTQQIINHLLNYPGEANGLYMSLT
Ga0129327_1001620513300013010Freshwater To Marine Saline GradientMYNPNNPSNWSWSKAFDEMNQTVNQAELTQQCINHVLNYPGEANGVFMS
Ga0129327_1026856313300013010Freshwater To Marine Saline GradientMYNVNNPSNWSWSKAFVEMDKTVHQAEMTQQIINHLHN
Ga0181391_106505713300017713SeawaterMYNINNPSNWSWSKAFDEMNKCVHESEMTQQCINHVLDYPGEAN
Ga0181412_103224933300017714SeawaterMYNSNNPSNWSWSKAFDEMEKTVNQAELTQQCINHVLNYPGEAN
Ga0181412_105541233300017714SeawaterMYNSNNPSNWSWSKAFDEMEKTVNQAELTQQCINHVLNYPGEANGVFMTLSK
Ga0181390_100402013300017719SeawaterMYNPNNPSNWSWSKAFDEMNKTVNQAELTQQSINHVLNY
Ga0181401_100641853300017727SeawaterMYNPNNPSNWSWSKAFSEMEKTVNQAELTQQSINHVLNYPGEANGVF
Ga0181418_115346013300017740SeawaterMYNPNNPSNWSWSKAFAEMEKTVNQAELTQQIINHL
Ga0181399_103191013300017742SeawaterMYHSNSPSNWSWKKAFDEMDKYVHQTEMTQQSINHVLNF
Ga0181397_100092013300017744SeawaterMYNINNPSNWSWSKAFDEMNKTVNQAELTQQSINHVLNY
Ga0181427_100642613300017745SeawaterMYNSNNPSNWSWSKAFDEMEKTVNQAELTQQIINHLHNYASK
Ga0181427_102447713300017745SeawaterMYNPNSPSNWSWSKAFDEMEKTVNQAELTQQCINHVLNYPGEANG
Ga0181389_100657913300017746SeawaterMYNQNNPSNWSWSKAFDEMEKTVNQAELTQQCINHVLNYPG
Ga0181393_116483123300017748SeawaterMYNTNNPSNWSWSKAFDEMEKTVNQAELTQQCINHVLNYPGEANGVF
Ga0181405_115687823300017750SeawaterMYNPNNPSNWSWSKAFDEMAKTINESEMTQQCINHILNYPGEA
Ga0181407_105571313300017753SeawaterMYNTNNPSNWSWSKAFAEMDKTVHESEMTQQCINHVLNYP
Ga0181411_103179443300017755SeawaterMYNPNNPSNWSWSKAFSEMEKTVNQAELTQQSINHVLNYPGE
Ga0181382_100172513300017756SeawaterMYNPNNPSNWSWSKAFDEMEKTVNQAELTQQCINHVLN
Ga0181382_100948713300017756SeawaterMYNQNNPSNWSWSKAFDEMEKTVNQAELTQQCINHVLN
Ga0181382_119058623300017756SeawaterMYNVNNPSNWSWSKAFTEMEKTVNQAELTQQIINHLHKLNTTNNR
Ga0181420_100338913300017757SeawaterMYNSNNPSNWSWSKAFDEMEKTVNQAELTQQSINHVLNYPGEANGVFM
Ga0181409_101351513300017758SeawaterMYNPNSPSNWSWSKAFDEMEKTVNQAELTQQSINHV
Ga0181414_102765013300017759SeawaterMYNPNNPSNWSWSKAFDEMEKTVNQAELTQQCINHV
Ga0181385_100399113300017764SeawaterMYNPNNPSNWSWSKAFDEMEKTVNQAELTQQCINH
Ga0181413_104227933300017765SeawaterMYNPNNPSNWSWSKAFDEMEKTVNQAELTQQIINHLHNYDGGVKE
Ga0181413_119830313300017765SeawaterMYNPNNPSNWSWSKAFAEMNKTVNQAELTQQCTNHVL
Ga0181406_101674843300017767SeawaterMYNSNNPSNWSWSKAFDEMAKTVNQAELTQQCINHVLNYPGEANGVFMT
Ga0181406_102107553300017767SeawaterMYNVNNPSNWSWSKACDEMEKTVNQAELTQQIINHLHNYDGGEKEF
Ga0187221_118509923300017769SeawaterMYNVNNPSNWSWSKAFAEMDKTVHQAEMTQQIINHLHNYDGG
Ga0187217_108133913300017770SeawaterMYNSNNPSNWSWSKAFDEMEKTVNQAELTQQCINHVLNYPGEANGVFMT
Ga0181430_123288513300017772SeawaterMYNPNNPSNWSWSKAFDEMNKTVNQAELTQQSINHVLNYPGEANG
Ga0181394_103279813300017776SeawaterMYNSNNPSNWSWSKAFDEMEKTVNQAELTQQSINHVLNYPGEANG
Ga0181395_106750513300017779SeawaterMYNPNNPSNWSWSKAFDEMNKTVNQAELTQQSINHVLN
Ga0181379_101300953300017783SeawaterMYNPNNPSNWSWSKAFDEMEKTVNQAELTQQCINHVLNY
Ga0181379_105380213300017783SeawaterMYNSNNPSNWSWSKAFDEMEKTVNQAELTQQSINHVLNYPGEAN
Ga0181379_134170123300017783SeawaterMYNINNPSNWSWSKAFDEMAKTVNQAELTQQCINHVLNYP
Ga0193983_105755823300019749SedimentMYNPNNPSNWSWSKAFDEMNQTVNQAELTQQCINHVLNYPGEANGVFMTLNKT
Ga0211654_105261323300020247MarineMYNINNPSNWSWSKAFDEMDKTVNQAELTQQCINHVLNYP
Ga0211527_1018268213300020378MarineMSYNPNNPSNWSWSKAFAEMDKTVHEAEMTQQIINHLH
Ga0211617_1037587223300020401MarineMYNPNNPSNWSWSKAFAEVNYTVKKAELEQQIMNHLDNYSGNPKWV
Ga0211643_1063102213300020457MarineMYNVNNPSNWSWSKAFDEMNKTVNQAELTQQCINHVLNYPGEAN
Ga0206677_1000322513300021085SeawaterMYNPNNPSNWSWSKAFDEMNNSVNQAELEQQIINHLSNYSGNP
Ga0212025_109518813300022057AqueousMYNVNNPSNWSWSKAFDEMEKTVNQAELTQQCINHVLNYPGEANG
Ga0196889_109885913300022072AqueousMYNVNNPSNWSWSKAFDEMEKTVNQAELTQQIINHLHNYDGGEKEF
Ga0196891_108070213300022183AqueousMYNVNNPSNWSWSKAFSEMEKTVNQAELTQQCINHVLNYPGEANG
Ga0196901_121356213300022200AqueousMYNPNNPSNWSWSKAFSEMEKTVNQAELTQQCINHVLN
Ga0228633_104331813300024228SeawaterMYNINNPSNWSWSKAFDEMNKTVNQAELTQQYINHV
Ga0228653_110567313300024237SeawaterMYNPNNPSNWSWSKAFDEMEKTVNQAELTQQCINHVLNYP
Ga0228651_105341313300024293SeawaterMYNTNNPSNWSWSKAFDEMNKTVHEAEMTQQSINHVLNYPGEANGVFMSL
Ga0228664_102068153300024294SeawaterMYNSNNPSNWSWSKAFDEMAKTVNQAELTQQCINHVLNYPGEANGVFMTLS
Ga0228654_102485513300024316SeawaterMYNINNPSNWSWSKAFDEMNKTVNQAELTQQCINHVLNYPGEANGVFMTLSKS
Ga0228656_105294833300024322SeawaterMYNINNPSNWSWSKAFDEMNKTVNQAELTQQCINHVLNY
Ga0228635_111731323300024328SeawaterMYNSNNPSNWSWSKAFDEMAKTVNQAELTQQCINHVLNYP
Ga0228663_103499133300024508SeawaterMYNINNPSNWSWSKAFDEMNKIVNQAELEQQIINHVLNYPGEANGIFMS
(restricted) Ga0255046_1036324813300024519SeawaterMYNVNNPSNWSWSKAFDEMNKTVNQAELTQQSINHVLNYPGEANGVFMTLSKL
(restricted) Ga0255046_1063019313300024519SeawaterMYNPNNPSNWSWKKAFDEMNKYVNQTELTQQSINHVLNY
Ga0208667_103025533300025070MarineMYNVNNPSNWSWSKAFDEMAKTIHESEMTQQCINHVLDYPGEANGVWM
Ga0208434_106971933300025098MarineMYNTNNPSNWSWSKAFAEMDKTVHEAEMTQQCINHVLNYPGEANG
Ga0208159_100311283300025101MarineMYNVNNPSNWSWSKAFDEMEKTVNQAELTQQIINHL
Ga0208013_107355913300025103MarineMYNPNNPSNWSWSKAFDEMAKTIHESEMTQQCINHVLDYPG
Ga0209535_101370053300025120MarineMYNQNNPSNWSWSKAFQEVEDTVNQAELTQQSINHVLNYPG
Ga0209348_101499963300025127MarineMYNPNNPSNWSWSKAFDEMNKTVNQAELTQQCINHVLDYPGEANGVF
Ga0209348_111449813300025127MarineMYNPNNPSNWSWSKAFDEMAKTVNQAELTQQSINHVLDYPGE
Ga0209232_103047243300025132MarineMYNPNNPSNWSWSKAFDEMNKTVNQAELTQQCINHVLNYPGEANGVF
Ga0209337_130951113300025168MarineMSYNPNNPSNWSWSKAFQEVEDTVNQAELTQQSINH
Ga0209715_108043613300025699Pelagic MarineMYNPNNPSNWSWSKAFDEMNQTVNQAELTQQCINHVLNYPGEANGVF
Ga0208767_108161943300025769AqueousMYNVNNPSNWSWSKAFAEMDKTVHEAEMTQQSIMIIGNSE
Ga0208645_101541783300025853AqueousMYNPNNPSNWSWSKAFSEMEKTVNQAELTQQCINHVLNYSGE
Ga0228647_113141813300026505SeawaterMYHSNSPSNWSWKKAFDEMDKYVHQTEMTQQSINH
Ga0209273_1026392423300027790Marine SedimentMYNPNNPSNWSWSKAFDEMNQTVNQAELTQQCINHVLNYPG
Ga0209503_1069437523300027859MarineMYNVNNPSNWSWSKAFAEMDKTVHQAEMTQQIINHLHNY
Ga0228646_105731313300028280SeawaterMYNINNPSNWSWSKAFDEMNKTVNQAELTQQCINHVLNYPGEANGVFIL
Ga0228646_106237213300028280SeawaterMYNPNNPSNWSWSKAFDEMNKTVNQAELTQQSINH
Ga0233394_103709913300028391SeawaterMYNINNPSNWSWSKAFDEMNKTVNQAELTQQCINHVLNYPGEANGVFMT
Ga0316202_1020504113300032277Microbial MatMYNPNNPSNWSWSKAFDEMNQTVNQAELTQQCINHVLNYP
Ga0316202_1040586713300032277Microbial MatMYNPNNPSNWSWSKAFDEMNQTVNQAELTQQCINHVLNYPGE


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