Metagenome / Metatranscriptome Family F095433

Basic Information
Family ID	F095433
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	72 residues
Representative Sequence	LDEKHFAEIDVAMLYIEEARKRAERAAAALRSDGADAHLIEALERSEEELSDVARRLRQGTFFAVPKEQLSL
Number of Associated Samples	79
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Most Common Taxonomy
Group	Unclassified (99.048 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand (31.429 % of family members)
Environment Ontology (ENVO)	Unclassified (31.429 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.952 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.00% β-sheet: 0.00% Coil/Unstructured: 40.00%
Feature Viewer

Powered by Feature Viewer

SCOP family	SCOP domain	Representative PDB	TM-score
a.2.6.1: HR1 repeat	d1cxzb_	1cxz	0.88966
a.25.1.0: automated matches	d3b3ha_	3b3h	0.88693
a.47.1.1: STAT	d1bg1a1	1bg1	0.88492
a.25.1.1: Ferritin	d1z6om1	1z6o	0.88192
a.25.1.4: YciF-like	d2gyqa1	2gyq	0.88053

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF02771	Acyl-CoA_dh_N	5.71
PF02384	N6_Mtase	4.76
PF02660	G3P_acyltransf	2.86
PF00903	Glyoxalase	2.86
PF12681	Glyoxalase_2	2.86
PF04851	ResIII	1.90
PF00282	Pyridoxal_deC	1.90
PF13657	Couple_hipA	1.90
PF13560	HTH_31	1.90
PF07883	Cupin_2	0.95
PF13777	Obsolete Pfam Family	0.95
PF09948	DUF2182	0.95
PF13555	AAA_29	0.95
PF13911	AhpC-TSA_2	0.95
PF01555	N6_N4_Mtase	0.95
PF13561	adh_short_C2	0.95
PF13432	TPR_16	0.95
PF11972	HTH_13	0.95
PF01546	Peptidase_M20	0.95
PF07992	Pyr_redox_2	0.95
PF14355	Abi_C	0.95
PF04480	DUF559	0.95
PF08502	LeuA_dimer	0.95
PF13784	Fic_N	0.95
PF13449	Phytase-like	0.95
PF07969	Amidohydro_3	0.95
PF00144	Beta-lactamase	0.95
PF14497	GST_C_3	0.95
PF02776	TPP_enzyme_N	0.95
PF13274	DUF4065	0.95
PF04828	GFA	0.95
PF07687	M20_dimer	0.95
PF13520	AA_permease_2	0.95
PF01613	Flavin_Reduct	0.95
PF09339	HTH_IclR	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	5.71
COG0344	Phospholipid biosynthesis protein PlsY, probable glycerol-3-phosphate acyltransferase	Lipid transport and metabolism [I]	2.86
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	1.90
COG0119	Isopropylmalate/homocitrate/citramalate synthases	Amino acid transport and metabolism [E]	0.95
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.95
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.95
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.95
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.95
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	0.95
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.95
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.95
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.95

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.05 %
All Organisms	root	All Organisms	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.05 %
cellular organisms	root	All Organisms → cellular organisms	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.05 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.05 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.05 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.95 %

Scaffold	Taxonomy	Length	IMG/M Link
3300019885\|Ga0193747_1000239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	22209	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.10%
Host-Associated	Host-Associated	0.95%
Engineered	Engineered	0.95%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.38%
Aquatic	Environmental → Aquatic	45.71%
Plants	Host-Associated → Plants	0.95%
Wastewater	Engineered → Wastewater	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	44.76%
Freshwater	Environmental → Aquatic → Freshwater	43.81%
Floodplain	Environmental → Terrestrial → Floodplain	4.76%
Cave	Environmental → Terrestrial → Cave	2.86%
Sediment	Environmental → Aquatic → Sediment	1.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.95%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.95%

Habitat	Taxonomy	Distribution
Ice	Environmental → Aquatic → Freshwater → Ice	38.10%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.14%
Loam	Environmental → Terrestrial → Soil → Loam	5.71%
Lake	Environmental → Aquatic → Freshwater → Lake	4.76%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	4.76%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	2.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.90%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.95%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.95%
Clay	Environmental → Terrestrial → Soil → Clay	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.95%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	38.10%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.86%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	12.38%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	4.76%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	4.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.81%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	2.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.90%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	1.90%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.95%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.95%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.95%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.95%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.95%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	31.43%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.48%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	9.52%
Polar Desert	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert	6.67%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	4.76%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.86%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.86%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.86%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	2.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.90%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	1.90%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.95%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.95%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001535	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illumina	Environmental	Open in IMG/M
3300001536	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300002121	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1	Environmental	Open in IMG/M
3300002547	Polar desert microbial communities from Antarctic Dry Valleys - UQ889	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006950	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one	Environmental	Open in IMG/M
3300007740	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-9-2 Soapdenovo	Environmental	Open in IMG/M
3300009873	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant	Engineered	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300011992	Permafrost microbial communities from Nunavut, Canada - A23_65cm_12M	Environmental	Open in IMG/M
3300012003	Permafrost microbial communities from Nunavut, Canada - A20_80cm_0.25M	Environmental	Open in IMG/M
3300012005	Permafrost microbial communities from Nunavut, Canada - A15_80cm_0M	Environmental	Open in IMG/M
3300012042	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ489 (22.06)	Environmental	Open in IMG/M
3300012045	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ449 (21.06)	Environmental	Open in IMG/M
3300012091	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ483 (23.06)	Environmental	Open in IMG/M
3300012092	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ445A (23.06)	Environmental	Open in IMG/M
3300012183	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ469 (22.06)	Environmental	Open in IMG/M
3300012184	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ134 (22.06)	Environmental	Open in IMG/M
3300012185	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ353 (21.06)	Environmental	Open in IMG/M
3300012186	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ416 (21.06)	Environmental	Open in IMG/M
3300012187	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ448 (21.06)	Environmental	Open in IMG/M
3300012188	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ330 (21.06)	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012529	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ568 (21.06)	Environmental	Open in IMG/M
3300012531	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ864 (21.06)	Environmental	Open in IMG/M
3300012678	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ288 (22.06)	Environmental	Open in IMG/M
3300012679	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ299 (21.06)	Environmental	Open in IMG/M
3300012680	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ224A (23.06)	Environmental	Open in IMG/M
3300012681	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ272 (21.06)	Environmental	Open in IMG/M
3300012684	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013758	Permafrost microbial communities from Nunavut, Canada - A24_65cm_12M	Environmental	Open in IMG/M
3300013763	Permafrost microbial communities from Nunavut, Canada - A15_65cm_0M	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017787	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025165	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1	Environmental	Open in IMG/M
3300025289	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 2	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025891	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one (SPAdes)	Environmental	Open in IMG/M
3300027638	Polar desert microbial communities from Antarctic Dry Valleys - UQ889 (SPAdes)	Environmental	Open in IMG/M
3300027773	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300031576	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032256	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top	Environmental	Open in IMG/M
3300032275	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M
3300033811	Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17	Environmental	Open in IMG/M
3300033812	Sediment microbial communities from East River floodplain, Colorado, United States - 65_j17	Environmental	Open in IMG/M
3300034113	Sediment microbial communities from East River floodplain, Colorado, United States - 7_s17	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A3PFW1_100366323	3300001535	Permafrost	MDETHFAEIDAAMLYIEEARARAERAANTLRAEGADTHLIEALAQAQEELSDVARALRQGTLFAVPNGQIKL*
A1565W1_102483552	3300001536	Permafrost	MLYVEEARSRAERAAASLRAGNADPHLIEALERTQEELSDVGRRLRQGTLFAIPKEQLSL
A10PFW1_104893381	3300001538	Permafrost	IDAAMLYIEEARARAERAANTLRAEGADTHLIEALAQAQEELSDVARALRQGTLFAVPNGQIKL*
C687J26615_100106743	3300002121	Soil	LDEKHFAEIDVAMLYIEEARKRAERAAAVLRADGAEQHLIDALERSEEQLTDVARRLRQGTFFAVPKEQLSL*
JGI24973J35851_10014482	3300002547	Polar Desert	VDEPHFAEIDVTMLYIEEARARAERAVATLRSAGAEAHLIEALEQSQQELSLTAKRLRQGTFFAVPSAQTTL*
JGI24973J35851_10176251	3300002547	Polar Desert	LDEKHFAEIDVAMLYIEEARERAERATTALRAEGADSHLIEALERSTTELSEVARRLRQGTFFAVPKEQLKL*
Ga0070682_1012169031	3300005337	Corn Rhizosphere	VDETHFAEIDAAMLYIEEARARAERGAAALRAGGADPHLVDALTEAQEQLSDVARGLRQGTLFAVPSGQIAL*
Ga0070714_1010201531	3300005435	Agricultural Soil	LDEQHFEQIDVAMLYIEQARERAERATAELRKLGGDQHLVEAMDRADRELSDVARRLRQGTLFAVPKEQLSI*
Ga0070681_100315282	3300005458	Corn Rhizosphere	VDETHFAEIDAAMLYIEDARARAERAAKTLRSEGADQHLVEALEGAQEQLSDVARALRQGTLFAVPTSQTSC*
Ga0070741_104620901	3300005529	Surface Soil	MDEHHYAEIDATLLYIEEARGRAERAIVELRRNGADSHLIEALESTMERLSDTARGLRQGTYFAVPSAQSSL*
Ga0070679_1000327367	3300005530	Corn Rhizosphere	VDETHFAEIDAAMLYIEDARARAERAAKTLRSEGADQHLVEALEGAQEQLSDVARALRQGTLFAVPSGQTSF*
Ga0070739_100329642	3300005532	Surface Soil	LDEEHFGEIDVAMMYVEEARARAERAAAALRRGGADPHLVEALEQAEDELSEVARRLRQGTLFAVPKEQLTL*
Ga0066696_104994102	3300006032	Soil	MLYIEEARARAQRACEALRKSGADEHLVDALAKAEDEISEVARRLRQGTLFAVPKEQLSI
Ga0074049_100105763	3300006580	Soil	VDEAHFGEIDAAMLYIEEARARTERAIAALRAGGADQHLIEALERTQNELSDVARRLRQGTLFAVPSAQLKLG*
Ga0075522_101145463	3300006638	Arctic Peat Soil	VDETHFAEIDAAMLYIEEARARAERAAKTLRVEGADAHLIEALEGAQEQLSDIARALRQGTLFAVPSGQTSF*
Ga0075524_101779172	3300006950	Arctic Peat Soil	LDEQHFAEIDVAMLYIEEARSRAERAADALRKSGADEHLVEAVAKAETELSDVGRRLRQGTLFAVPKEQLSL*
Ga0104326_1270683	3300007740	Soil	MLYVEEARSRAERAAASLRAGNADPHLIEALERTQEELSDVGRRLRQGTLFSIPKEQLTL
Ga0131077_116893411	3300009873	Wastewater	VASADAERDERHFAEIDVAMLYVEEARQRAERAAAALRVDNADAVLVEALEQTTAELSDVARRLRQRTFFAT*
Ga0126309_108681752	3300010039	Serpentine Soil	VDETHFAEIDATMMYIEEARARAERAVKALRAQDAAPHLLRALEETQEQLSGVARALRQGTFFAVPMAQTTL*
Ga0126314_114921591	3300010042	Serpentine Soil	VDEEHFAEIDASMLYIEEARARAERAARTLEREGAEPHLIRALEEAQRQLSDVARELRQGTLFAVPAGQISL*
Ga0120146_10109522	3300011992	Permafrost	MLYVEEARSRAERAAASLRAGNADLHLIEALERTQEELSDVGRRLRQGTLFSIPKEQLTL
Ga0120163_10217012	3300012003	Permafrost	VDETHFAEIDAAMLYIEEARARAERAAKTLRAEGADAHLIEALEGAQEQLSDIARALRQGTLFAVPSGQTSF*
Ga0120161_10394482	3300012005	Permafrost	LDEQHFAEIDVAMLYIEEARSRAERAVDALRKSGADAHLVEAVAKAETELSDVGRRLRQGTLFAVPKEQLSL*
Ga0120161_11211592	3300012005	Permafrost	MLYVEEARSRAERAVASLRAGNADLHLIEALERTQEELSDVGRRLRQGTLFSIPKEQLTL
Ga0136627_10117344	3300012042	Polar Desert Sand	VDEPHFAEIDVTMLYIEEARARAERAVATLRSTGAETHLIEALEQSQQELSLTAKRLRQGTFFAVPSAQTTP*
Ga0136627_10395532	3300012042	Polar Desert Sand	VDEPHFAEIDVTMLYIEEARARAERAVVILRSAGAETHLIEALEQSQQELSLTAKRLRQGTFFAVPSAQTTL*
Ga0136627_12027761	3300012042	Polar Desert Sand	VDEPHFAEIDVTMLYIEEARARAERAVATLRSAGAETHLIEALEQSQQELSLAAKRLRQGTFFAVPSAQSTL*
Ga0136623_100199541	3300012045	Polar Desert Sand	LDEKHFAEIDVAMLYIEEARERTERAATILRADGADAHLIEALERSTAELSELARRLRQGTLFAVPKEQLNL*
Ga0136623_100380862	3300012045	Polar Desert Sand	LDEKHFAEIDVAMLYIEEARERTERATTALRAEGADAHLIEALERSTAELSEVARRLRQGTFFAVPKEQLEL*
Ga0136623_102010092	3300012045	Polar Desert Sand	MDEASSQSGRTGSVGHSATEGPPVDEPHFAEIDVTMLYIEEARARSERAVATLRSAGAEAHLIEALERSQQELSLTGKRLRQGTFFAVPSAQTTL*
Ga0136625_10467711	3300012091	Polar Desert Sand	PGSVSHSATEGPPVDEPHFAEIDVTMLYIEEARARAERAVATLRSAGAEAHLIEALEQSQQELSLTAKRLRQGTFFAVPSAQTTL*
Ga0136625_11213181	3300012091	Polar Desert Sand	MDEPHFAEIDVTMLYIEEARVRAERAVATLRSADAETHLIEALEESQQELSLVAKRLRQGTFFAVPSAQTTL*
Ga0136621_14219491	3300012092	Polar Desert Sand	VDEPHFAEIDVTMLYIEEARARSERAVATLRSAGAEAHLIEALERSQQELSLAAKRLRQGTFFAVPSAQSTL
Ga0136624_11312031	3300012183	Polar Desert Sand	VSPSATEGPPVDEPHFAEIDVTMLYIEEARARSERAVATLRSAGAEAHLIEALERSQQELSLTGKRLRQGTFFAVPSAQTTL*
Ga0136610_10085681	3300012184	Polar Desert Sand	SATEGPPVDEPHFAEIDVTMLYIEEARARAERAVATLRSAGAEAHLIEALEQSQQELSLTAKRLRQGTFFAVPSAQTTL*
Ga0136610_10740191	3300012184	Polar Desert Sand	MDEASSQSGRTGSVDHSATEGPPVDEPHFAEIDVTMLYIEEARARSERAVATLRSAGAEAHLIEALERSQQELSLTGKRLRQGTFFAVPSAQTTL*
Ga0136619_101377191	3300012185	Polar Desert Sand	PPVDEPHFAEIDVTMLYIEEARARAERAVATLRSTGAETHLIEALEQSQQELSLTAKRLRQGTFFAVPSAQTTP*
Ga0136620_102383002	3300012186	Polar Desert Sand	VDEPHFAEIDVTMLYIEEARARSERALATLRSAGAEAHLIEALERSQQELSLTGKRLRQGTFFAVPSAQTTL*
Ga0136622_100021611	3300012187	Polar Desert Sand	VDEPHFAEIDVTMLYIEEARVRAERAVATLRSAGAETHLIEALEESQQELSLVAKRLRQGTFFAVPSAQTTL*
Ga0136618_103136881	3300012188	Polar Desert Sand	VDEPHFAEIDVTMLYIEEARARAERAVATLRSAGAEAHLIEALEQSQQELSLAAKRLRQGTFFAVPSAQSTL*
Ga0137365_100458332	3300012201	Vadose Zone Soil	VDEAHFGEIDAAMLYIEEARARTERAAAALRASGADGHLIEALERTQAELSEVARGLRQGTLFAVPSAQLRLG*
Ga0137365_102957022	3300012201	Vadose Zone Soil	LDEEHFAEIDATMLYIEEARARTERAIAALRRGGGEQHLIDALEETQQQLSDVARDLRQGTLFAVPSGQTTL*
Ga0137374_100501196	3300012204	Vadose Zone Soil	LDEEHFAEIDATMLYIEEARARTERGVAALRRGGGEQHLIDALEETQRQLSEVARDLRQGTLFAVPSGQATL*
Ga0137374_100518572	3300012204	Vadose Zone Soil	MDLDEEHFAEVDATMLYIEEARARTERAVAALRRGGGEQHLIDALEETQRQLSEVARDLRQGTLFAVPSGQATL*
Ga0137374_107207241	3300012204	Vadose Zone Soil	VDEAHYAEIDAAMLYIEEARARTERAAAALRKNGADEHLIEALERTQAELSDVARKLRQGTLFAVPSAQLRLG*
Ga0137378_111761092	3300012210	Vadose Zone Soil	VDEAHFGEIDAAMLYIEEARARTERAAAALRASGADGHLIVALERTQAELSEVARGLRQGTLFAVPSAQLRLG*
Ga0137372_108834472	3300012350	Vadose Zone Soil	LDEEHFAEIDATMLYIEEARARTERAIAALRRGGGEQHLIDALEETQRQLSDVARDLRQGTLFAVPSGQTTL*
Ga0137369_102878092	3300012355	Vadose Zone Soil	VDETHFAEIDATMLYIEEARARTERAIAALRRQGAEPHLIHALEEAQQQLSDTARELRQGTLFAVPAAQTSF*
Ga0137371_106538312	3300012356	Vadose Zone Soil	MDLDEEHFAEIDATMLYIEEARARTERAIAALRRGGGEQHLIDALEETQRQLSDVARDLRQGTLFAVPSGQTTL*
Ga0137384_107212821	3300012357	Vadose Zone Soil	VDEAHFGEIDAAMLYIEEARARTERAAAALRASGADGHLIEALERTQAELSEVARGLRQGTLFAVPSAQ
Ga0137368_100465443	3300012358	Vadose Zone Soil	YIEEARARTERAVAALRRGGGEQHLIDALEETQRQLSEVARDLRQGTLFAVPSGQATL*
Ga0136630_11689661	3300012529	Polar Desert Sand	GSFERMAKTGSRSGRAGSVSRSATEGPPVDEPHFAEIDVTMLYIEEARVRAERAVATLRSAGAETHLIEALEESQHELSLVAKRLRQGTFFAVPSAQTTL*
Ga0136630_12881161	3300012529	Polar Desert Sand	HFAEIDVAMIYIEEARARAERAATVLRSNGADEHLAEALERTQAELSDVARRLRQGTLFAVPNEQLTL*
Ga0136630_13738801	3300012529	Polar Desert Sand	MLYIEEARERTERAATILRADGADAHLIEALERSTAELSELARRLRQGTLFAVPKEQLNL
Ga0136640_100109223	3300012531	Polar Desert Sand	MDEPHFAEIDVTMLYIEEARVRAERAVATLRSASAETHLIEALEESQQELSLVAKRLRQGTFFAVPSAQTTL*
Ga0136615_1000010317	3300012678	Polar Desert Sand	LDEEHFSEIDAAMLYIEEARARAERGAAALRKAGAEPHLIEALENAQEQLEDASRTLMQGTLFAVPSAQTSL*
Ga0136615_103581932	3300012678	Polar Desert Sand	VDEPHFAEIDVTMLYIEEARARSERAVATLRSAGAEAHLIEALERSQQELSLTGKRLRQGTFFAVPSAQTTL*
Ga0136616_100594232	3300012679	Polar Desert Sand	EPHFAEIDVTMLYIEEARARAERAVATLRSAGAEAHLIEALEQSQQELSLTAKRLRQGTFFAVPSAQTTL*
Ga0136612_101455292	3300012680	Polar Desert Sand	LDEKHFAEIDVAMLYIEEARERAERAATALRAEGADAHLIEALERATTEISDVARRLRQGTFFAVPKEQLKL*
Ga0136613_100066095	3300012681	Polar Desert Sand	MDEPHFAEIDVTMLYIEEARVRAERAVATLRSAGAETHLIEALEESQHELSLVAKRLRQGTFFAVPSAQTTL*
Ga0136614_110943071	3300012684	Polar Desert Sand	VDEPHFAEIDVTMLYIEEARARAERAVATLRSAGAETHLIEALEESQQELSLVAKRLRQGTFFAVPSAQTTL*
Ga0157370_107101013	3300013104	Corn Rhizosphere	VDETHFAEIDAAMLYIEEARARAERAAKTLRAEGADEHLAEALEGAQEQLSDVARALRQGTLFAVPSGQISL*
Ga0120147_10371022	3300013758	Permafrost	MLYVEEARSRAERAAASLRAGNADLHLIEALERTQEELSDVGRRVRQGTLFSIPKEQLTL
Ga0120179_10544632	3300013763	Permafrost	LDEQHFHEIDVAMLYVEEARARVQRSLEALRRDGADPHLSEALERAEEELSEVARRLRQGTLFAVPKEQLSL*
Ga0120158_101681682	3300013772	Permafrost	DEKHFAEIDVAMLYIEEARSRAERAVEVLRKSNADEHLVDALAKAEGELSEVARRLRQGTLFAVPKEQLSL*
Ga0182024_119886191	3300014501	Permafrost	LDEQYFAEIDVAMLYIEEARARAERAVATLRKSGAHEHLVEALVHAEDELSEVGRRLRQGTLFAVPSEQLSL*
Ga0183260_100113878	3300017787	Polar Desert Sand	LDEKHFAEIDVAMLYIEEARERTERAMTALRAEGADAHLIEALERATAEISDVARRLRQGTFFAVPKEQLKL
Ga0183260_100331523	3300017787	Polar Desert Sand	VDEPHFAEIDVTMLYIEEARARAERAVATLRSAGAEAHLIEALEQSQQELSLTAKRLRQGTFFAVPSAQTTL
Ga0183260_102158792	3300017787	Polar Desert Sand	MDEPHFAEIDVTMLYIEEARVRAERAVATLRSAGAETHLIEALEESQQELSLVAKRLRQGTFFAVPSAQTTL
Ga0183260_107798931	3300017787	Polar Desert Sand	SGHPGSVSPSATEGPPVDEPHFAEIDVTMLYIEEARARSERAVATLRSAGAEAHLIEALERSQQELSLTGKRLRQGTFFAVPSAQTTL
Ga0183260_108835272	3300017787	Polar Desert Sand	FAEIDVAMLYIEEARVRAERAAVALRGSGADEHLVEALEKTQSELSAVARRLRQGTLFAIPKEQLTL
Ga0136617_100659243	3300017789	Polar Desert Sand	LDEKHFAEIDVAMLYIEEARERAERATTALRAEGADAHLIEALERATTEISDVARRLRQGTFFAVPKEQLKL
Ga0136617_100728614	3300017789	Polar Desert Sand	MDEASSQSGRTGSVGHSATEGPPVDEPHFAEIDVTMLYIEEARARSERAVATLRSAGAEAHLIEALERSQQELSLTGKRLRQGTFFAVPSAQTTL
Ga0184637_106179962	3300018063	Groundwater Sediment	LDEQHFAEIDVAMLYIEEARVRAERAASTLRGSGADEHLIEALEKTQSELSDVARRLRQGTLFAVPKEQLTL
Ga0184627_101147702	3300018079	Groundwater Sediment	MDEKHFAEIDVAMLYIEEARKRAERAAAELRADGADKHLIDALERSEEELSEVARRLRQGTFFAVPKEQLNL
Ga0193747_100023919	3300019885	Soil	MLYVEEARSRAERAAASLRAGNADPHLIEALERTQEELSDVGRRLRQGTLFAIPKAQLSL
Ga0206356_118780652	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	STTLPQGRPLPVDDTHFAEIDAAMLYIEDARARAERAAKTLRSEGADQHLVEALEGAQEQLSDVARALRQGTLFAVPSGQTSF
Ga0209108_100089332	3300025165	Soil	MLYIEEARERAERAAKALRAEGADAHLMEALVRSMTELSDVARRLRQGTYFAVPKEQLNL
Ga0209002_104025873	3300025289	Soil	LDEKHFAEIDVAMLYIEEARERTERATTALRAEGADAHLIEALERSTAELSEVARRLRQGTFFAVPKEQLSL
Ga0209640_100613364	3300025324	Soil	LDEKHFAEIDVAMLYIEEARKRAERAAAVLRADGAEQHLIDALERSEEQLTDVARRLRQGTFFAVPKEQLSL
Ga0209585_101888742	3300025891	Arctic Peat Soil	LDEQHFAEIDVAMLYIEEARSRAERAADALRKSGADEHLVEAVAKAETELSDVGRRLRQGTLFAVPKEQLSF
Ga0208612_10006048	3300027638	Polar Desert	LDEKHFAEIDVAMLYIEEARERAERATTALRAEGADSHLIEALERSTTELSEVARRLRQGTFFAVPKEQLKL
Ga0208612_10073695	3300027638	Polar Desert	LDEKHFAEIDVAMLYIEEARERTERAATILRADGADAHLIEALERSTAELSELARRLRQGTLFAVPKEQLNL
Ga0208612_10178151	3300027638	Polar Desert	EPHFAEIDVTMLYIEEARVRAERAVATLRSAGAETHLIEALEESQQELSLVAKRLRQGTFFAVPSAQTTL
Ga0208612_10306603	3300027638	Polar Desert	VDEPHFAEIDVTMLYIEEARARSERAVATLRSAGAEAHLIEALERSQQELSLTGKRLRQGTFFAVPSAQTTL
Ga0208612_11596672	3300027638	Polar Desert	VDEPHFAEIDVTMLYIEEARARAERAVATLRSAGAETHLIEALEQSQQELSLAAKRLRQGTFFAVPSAQSTL
Ga0209810_10396164	3300027773	Surface Soil	LDEEHFGEIDVAMMYVEEARARAERAAAALRRGGADPHLVEALEQAEDELSEVARRLRQGTLFAVPKEQLTL
Ga0209726_100118197	3300027815	Groundwater	LDEQHFAEIDVAMLYIEEARSRAERAVDALRKSGADDHLIEAVATAERELSDVGRRLRQGTLFAVPKEQLTL
Ga0307293_103013542	3300028711	Soil	VDEQHFAEIDVAMLYVEEARARAERAAETLRKGGAPEHLIDALAKAEQELSEVARQLRQGTLFAVPREQLSL
Ga0299906_100875593	3300030606	Soil	LDEKHFAEVDVAMLYIEDARERTERGASALRAEGADAHLVEALERASAELSDVARTLRQGTLFAVPKEQLKL
Ga0247727_101004892	3300031576	Biofilm	LDEKHFAEIDVAMLYIEEARKRAERAAAALRSDGADAHLIEALERSEEELSDVARRLRQGTFFAVPKEQLSL
Ga0247727_101040785	3300031576	Biofilm	LDENHFAEIDVAMLYIEEARKRAERAAAALRSEGADAHLIEALERSEEELSDVARRLRQGTFFAVPKEQLSL
Ga0247727_103141372	3300031576	Biofilm	LDEKHFAEIDVAMLYIEEARKRAERAAAALRSDGADAHLIEALERIEEELSDVARRLRQG
Ga0307374_100239443	3300031670	Soil	LDEQAFEQIDVAMLYIEQARERTERATAEMRKLGADEHLIEAMERAREELSDVARRLRQGTFFAVPKEQLTL
Ga0308176_117411972	3300031996	Soil	VDETHFAEIDAAMLYIEEARARAERAAATLRSQGAGPHLIEAVEDAQEQLSDVARALRQGTLFAVPSGQTTL
Ga0315281_1001125511	3300032163	Sediment	LDEQHFAEIDVAMLYIEEARSRAERAVDALRKSGADEHLVEAVAKAETELSDVGRRLRQGTLFAVPKEQLTL
Ga0315283_108428882	3300032164	Sediment	LDEKHFAEVDVAMLYIEEARERAERAATALRAGGADAHLIEALERSEAELSDVARRLRQGTLFAVPKEQLSL
Ga0315271_111953352	3300032256	Sediment	LDEKHFAEIDVAMLYIEEARERAERAVVALRAGGADAHLVEALERSEAELSDVARRLRQGTLFAVPKEQLSL
Ga0315270_100635213	3300032275	Sediment	LDEKHFAEIDVAMLYIEEARERAERAAVTLRAGGADAHLVEALERSTAELSDVARRLRQGTLFAVPKEQLSL
Ga0334722_108685971	3300033233	Sediment	FAEIDVAMLYIEEARERAQRAAVALRDGGADAHLIEALERSEAELSDVARRLRQGTLFAVPKEQLSL
Ga0364924_084233_133_351	3300033811	Sediment	LDEKHFAEIDVAMLYIEEARKRAERAAATLRADGAEQHLIDALERSEAELTDVARRLRQGTFFAVPKEQLSL
Ga0364926_077974_2_211	3300033812	Sediment	KHFAEIEVAMLYIEEARERAERAAKALRAEGADAHLIEALERSTTELSDVARRLRQGTYFAVPKEQLNL
Ga0364926_113657_237_455	3300033812	Sediment	LDEKHFAEIDVAMLYVEEARKRAERAAAALKAEGADAHLIEALERSTAELSDVARRLRQGTLFAVPKEQLHL
Ga0364937_125331_1_216	3300034113	Sediment	LDEEHFAEIDVAMLYIEEARKRAERAAATLRADGAEQHLIDALERSEAELTDVARRLRQGTFFAVPKEQLSL
Ga0364945_0171017_1_219	3300034115	Sediment	LDEKHFAEIDVAMLYIEEARKRAERAAATLRADGAEQHLIDALERSEAELTEVARRLRQGTFFAVPKEQLKL

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095433

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign