NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F095560

Metagenome / Metatranscriptome Family F095560

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095560
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 64 residues
Representative Sequence MSKTKTYYTNEVEKQVDDIKDKLVNNEMSLDDAANKLENIENLSLVTDMTDFDEMAYLLKHGD
Number of Associated Samples 66
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 42.86 %
% of genes near scaffold ends (potentially truncated) 40.00 %
% of genes from short scaffolds (< 2000 bps) 80.95 %
Associated GOLD sequencing projects 54
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (55.238 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(50.476 % of family members)
Environment Ontology (ENVO) Unclassified
(57.143 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(91.429 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 71.43%    β-sheet: 0.00%    Coil/Unstructured: 28.57%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF11753DUF3310 19.05
PF04545Sigma70_r4 7.62
PF03407Nucleotid_trans 6.67
PF10263SprT-like 1.90
PF05050Methyltransf_21 1.90
PF01832Glucosaminidase 1.90
PF08291Peptidase_M15_3 0.95
PF16805Trans_coact 0.95
PF12705PDDEXK_1 0.95


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A55.24 %
All OrganismsrootAll Organisms44.76 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000116|DelMOSpr2010_c10217279Not Available602Open in IMG/M
3300001748|JGI11772J19994_1014633All Organisms → Viruses → Predicted Viral1247Open in IMG/M
3300005512|Ga0074648_1062253All Organisms → Viruses → Predicted Viral1523Open in IMG/M
3300005512|Ga0074648_1093571All Organisms → Viruses → Predicted Viral1080Open in IMG/M
3300005934|Ga0066377_10000018Not Available44527Open in IMG/M
3300006357|Ga0075502_1666014Not Available731Open in IMG/M
3300006400|Ga0075503_1649414Not Available516Open in IMG/M
3300006802|Ga0070749_10002394Not Available12584Open in IMG/M
3300006802|Ga0070749_10100765All Organisms → Viruses → Predicted Viral1708Open in IMG/M
3300006802|Ga0070749_10141978All Organisms → cellular organisms → Bacteria1401Open in IMG/M
3300006802|Ga0070749_10591907Not Available599Open in IMG/M
3300006810|Ga0070754_10356395Not Available646Open in IMG/M
3300006810|Ga0070754_10446743Not Available561Open in IMG/M
3300006869|Ga0075477_10111710Not Available1163Open in IMG/M
3300006869|Ga0075477_10254239Not Available707Open in IMG/M
3300006916|Ga0070750_10190043Not Available914Open in IMG/M
3300006916|Ga0070750_10209290Not Available860Open in IMG/M
3300006919|Ga0070746_10322650Not Available705Open in IMG/M
3300006919|Ga0070746_10369687Not Available647Open in IMG/M
3300006919|Ga0070746_10438874Not Available581Open in IMG/M
3300007344|Ga0070745_1092177All Organisms → Viruses → Predicted Viral1192Open in IMG/M
3300007344|Ga0070745_1363776Not Available505Open in IMG/M
3300007346|Ga0070753_1324112All Organisms → cellular organisms → Bacteria547Open in IMG/M
3300007538|Ga0099851_1017084Not Available2944Open in IMG/M
3300007538|Ga0099851_1099118All Organisms → cellular organisms → Bacteria1111Open in IMG/M
3300007539|Ga0099849_1023684Not Available2662Open in IMG/M
3300007539|Ga0099849_1156348All Organisms → cellular organisms → Bacteria879Open in IMG/M
3300007539|Ga0099849_1206380All Organisms → cellular organisms → Bacteria737Open in IMG/M
3300007539|Ga0099849_1257412Not Available640Open in IMG/M
3300007540|Ga0099847_1039026Not Available1512Open in IMG/M
3300007541|Ga0099848_1078964Not Available1285Open in IMG/M
3300007542|Ga0099846_1030387All Organisms → cellular organisms → Bacteria → Proteobacteria2079Open in IMG/M
3300007542|Ga0099846_1289336Not Available563Open in IMG/M
3300007960|Ga0099850_1197490All Organisms → cellular organisms → Bacteria793Open in IMG/M
3300009000|Ga0102960_1279267Not Available590Open in IMG/M
3300009027|Ga0102957_1174025Not Available767Open in IMG/M
3300009149|Ga0114918_10467664Not Available679Open in IMG/M
3300009149|Ga0114918_10541533Not Available620Open in IMG/M
3300009469|Ga0127401_1035242Not Available1442Open in IMG/M
3300010296|Ga0129348_1093837All Organisms → Viruses → Predicted Viral1061Open in IMG/M
3300010297|Ga0129345_1195866Not Available718Open in IMG/M
3300010299|Ga0129342_1093696All Organisms → cellular organisms → Bacteria1131Open in IMG/M
3300010299|Ga0129342_1107487All Organisms → Viruses → Predicted Viral1042Open in IMG/M
3300010300|Ga0129351_1322785Not Available582Open in IMG/M
3300010318|Ga0136656_1038946All Organisms → Viruses → Predicted Viral1721Open in IMG/M
3300010318|Ga0136656_1219990All Organisms → cellular organisms → Bacteria632Open in IMG/M
3300012520|Ga0129344_1126022Not Available777Open in IMG/M
3300012520|Ga0129344_1429827Not Available727Open in IMG/M
3300012525|Ga0129353_1634982Not Available518Open in IMG/M
3300012528|Ga0129352_10675206All Organisms → cellular organisms → Bacteria748Open in IMG/M
3300012919|Ga0160422_10454253All Organisms → cellular organisms → Bacteria → Proteobacteria802Open in IMG/M
3300012967|Ga0129343_1251238All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300012967|Ga0129343_1265286Not Available590Open in IMG/M
3300017949|Ga0181584_10773758Not Available569Open in IMG/M
3300017956|Ga0181580_10075659All Organisms → Viruses → Predicted Viral2502Open in IMG/M
3300017962|Ga0181581_10937439Not Available508Open in IMG/M
3300017967|Ga0181590_10026796Not Available4652Open in IMG/M
3300017967|Ga0181590_10162543All Organisms → Viruses → Predicted Viral1701Open in IMG/M
3300018041|Ga0181601_10707656Not Available507Open in IMG/M
3300018421|Ga0181592_10870983Not Available588Open in IMG/M
3300018428|Ga0181568_11395078All Organisms → cellular organisms → Bacteria → Proteobacteria520Open in IMG/M
3300020436|Ga0211708_10047236All Organisms → Viruses → Predicted Viral1656Open in IMG/M
3300020439|Ga0211558_10196103All Organisms → cellular organisms → Bacteria → Proteobacteria964Open in IMG/M
3300021347|Ga0213862_10034077Not Available1860Open in IMG/M
3300021347|Ga0213862_10356555Not Available521Open in IMG/M
3300021356|Ga0213858_10148163All Organisms → cellular organisms → Bacteria → Proteobacteria1146Open in IMG/M
3300021371|Ga0213863_10123535Not Available1209Open in IMG/M
3300021378|Ga0213861_10135883All Organisms → cellular organisms → Bacteria1415Open in IMG/M
3300021378|Ga0213861_10494259Not Available581Open in IMG/M
3300021379|Ga0213864_10165571All Organisms → Viruses → Predicted Viral1119Open in IMG/M
3300021379|Ga0213864_10396280Not Available697Open in IMG/M
3300021425|Ga0213866_10090396All Organisms → cellular organisms → Bacteria1679Open in IMG/M
3300021425|Ga0213866_10096810All Organisms → Viruses → Predicted Viral1612Open in IMG/M
3300021959|Ga0222716_10001858Not Available17394Open in IMG/M
3300021959|Ga0222716_10029790All Organisms → Viruses → Predicted Viral3986Open in IMG/M
3300021960|Ga0222715_10226259All Organisms → Viruses → Predicted Viral1102Open in IMG/M
3300021960|Ga0222715_10272777All Organisms → cellular organisms → Bacteria → Proteobacteria973Open in IMG/M
3300021961|Ga0222714_10085568All Organisms → cellular organisms → Bacteria2040Open in IMG/M
3300021961|Ga0222714_10128049Not Available1557Open in IMG/M
3300021961|Ga0222714_10155982All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M1364Open in IMG/M
3300021961|Ga0222714_10420668All Organisms → cellular organisms → Bacteria701Open in IMG/M
3300021962|Ga0222713_10132926All Organisms → Viruses → Predicted Viral1740Open in IMG/M
3300021962|Ga0222713_10209317All Organisms → cellular organisms → Bacteria1298Open in IMG/M
3300021962|Ga0222713_10396461Not Available851Open in IMG/M
3300021964|Ga0222719_10005668Not Available10731Open in IMG/M
3300022198|Ga0196905_1005059All Organisms → Viruses → Predicted Viral4657Open in IMG/M
3300022198|Ga0196905_1046107All Organisms → Viruses → Predicted Viral1254Open in IMG/M
3300022198|Ga0196905_1162038Not Available572Open in IMG/M
3300022200|Ga0196901_1017085Not Available2966Open in IMG/M
3300022200|Ga0196901_1081989All Organisms → Viruses → Predicted Viral1149Open in IMG/M
3300022200|Ga0196901_1139317Not Available816Open in IMG/M
3300023176|Ga0255772_10558576Not Available537Open in IMG/M
3300025655|Ga0208795_1005186All Organisms → cellular organisms → Bacteria5016Open in IMG/M
3300025674|Ga0208162_1025974All Organisms → Viruses → Predicted Viral2193Open in IMG/M
3300025687|Ga0208019_1010529Not Available3961Open in IMG/M
3300025687|Ga0208019_1024785All Organisms → Viruses → Predicted Viral2299Open in IMG/M
3300025751|Ga0208150_1213002Not Available593Open in IMG/M
3300025759|Ga0208899_1241603Not Available543Open in IMG/M
3300025769|Ga0208767_1026441All Organisms → cellular organisms → Bacteria → Proteobacteria3083Open in IMG/M
3300025769|Ga0208767_1077894All Organisms → Viruses1406Open in IMG/M
3300025771|Ga0208427_1071097Not Available1243Open in IMG/M
3300025889|Ga0208644_1031031All Organisms → Viruses → Predicted Viral3202Open in IMG/M
3300025889|Ga0208644_1185684Not Available917Open in IMG/M
3300026085|Ga0208880_1000109Not Available16972Open in IMG/M
3300034374|Ga0348335_135543Not Available701Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous50.48%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water11.43%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater9.52%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh8.57%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient6.67%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment2.86%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.90%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface1.90%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.90%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water1.90%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater0.95%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.95%
Meromictic PondEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond0.95%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300001748Saline surface water microbial communities from Etoliko Lagoon, Greece - surface water (0 m)EnvironmentalOpen in IMG/M
3300005512Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_waterEnvironmentalOpen in IMG/M
3300005934Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_BEnvironmentalOpen in IMG/M
3300006357Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006400Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006869Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300007344Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4EnvironmentalOpen in IMG/M
3300007346Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31EnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007541Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaGEnvironmentalOpen in IMG/M
3300007542Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaGEnvironmentalOpen in IMG/M
3300007960Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaGEnvironmentalOpen in IMG/M
3300009000Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MGEnvironmentalOpen in IMG/M
3300009027Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MGEnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300009469Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 6m depth; DNA IDBA-UDEnvironmentalOpen in IMG/M
3300010296Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNAEnvironmentalOpen in IMG/M
3300010297Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNAEnvironmentalOpen in IMG/M
3300010299Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300010318Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_DNAEnvironmentalOpen in IMG/M
3300012520Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012525Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012528Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012919Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaGEnvironmentalOpen in IMG/M
3300012967Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017949Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017956Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017962Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017967Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018041Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018421Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018428Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020436Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)EnvironmentalOpen in IMG/M
3300020439Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)EnvironmentalOpen in IMG/M
3300021347Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266EnvironmentalOpen in IMG/M
3300021356Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245EnvironmentalOpen in IMG/M
3300021371Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497EnvironmentalOpen in IMG/M
3300021378Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131EnvironmentalOpen in IMG/M
3300021379Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247EnvironmentalOpen in IMG/M
3300021425Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284EnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022198Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022200Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300023176Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaGEnvironmentalOpen in IMG/M
3300025655Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025674Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025687Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025751Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025771Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300026085Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B (SPAdes)EnvironmentalOpen in IMG/M
3300034374Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
DelMOSpr2010_1021727923300000116MarineMSKTKTYYTNEVEKQVDDIKDKLVNNEMSLDDAANKLENIENLSLVTDMTDFDEMAYLLKHGD*
JGI11772J19994_101463323300001748Saline Water And SedimentMSKTKTYYTNEVEKQVDDIKDKLVNNEMSLDDAANKLENIENLSLVTDMTDFDEMAYLLKHED*
Ga0074648_106225323300005512Saline Water And SedimentMILLTITKENTMSKTKTYYTNEVEKQVDDIKDKLVNNEMSLDDAANKLENIENLSLVTDMTDFDEMAYLLKHGD*
Ga0074648_109357133300005512Saline Water And SedimentMKMKEYATEQVEKQVDDIKDKLVNNEMTLDDAASKLEKIDNISLVTNMVDFDEMAYLLKFGD*
Ga0066377_10000018263300005934MarineMSKTKDWIVDTVNTKLDEIKDKLVNNEMSLDDAASKIEKIDNLGLVCDSTDYDELAYTLKYGD*
Ga0075502_166601413300006357AqueousMSKTKDYFTSAVEKQVDDIKDKLVNNEMTLDDAANKLEKIDNLSLVTDMTDYDEMAYILKHGD*
Ga0075503_164941413300006400AqueousNTMSKTKTYYTNEVEKKVDDIKDKLVNNEMSLDDAANKLENIENISLVTDMTDFDEMAYLLKHGD*
Ga0070749_1000239453300006802AqueousMKVKEYATEQVEKQLDDIKDKLVNNEMSLDDAANKIEKIDNLGLVCDSTDYDELAYTLKYGD*
Ga0070749_1010076523300006802AqueousMKTKMYYTNQVEKQVDDIKDKLINNEMSLDDAANKLENIENLNLVTDMTDFDEMAYLLKHGD*
Ga0070749_1014197823300006802AqueousMINKGENTMKVKEYATVQVEKQVDDIKDKLVNNEMTLDDAANKLENIENIGLITNSIDFDEMAYLLKFGD*
Ga0070749_1059190713300006802AqueousKEKNTMSKTKTYYTNEVEKKVDDIKDKLVNNEMSLDDAANKLENIENISLVTDMTDFDEMAYLLKHGD*
Ga0070754_1035639513300006810AqueousMSKTKTYYTNEVEKKVDDIKDKLVNNEMSLDDAANKLENIENISLVTDMTDFDEMAYLLKHGD*
Ga0070754_1044674313300006810AqueousTKDYFTSAVEKQVDDIKDKLVNNEMTLDDAANKLEKIDNLSLVTDMTDYDEMAYILKHGD
Ga0075477_1011171043300006869AqueousTEQVEKQLDDIKDKLVNNEMSLDDAANKIEKIDNLGLVCDSTDYDELAYTLKYGD*
Ga0075477_1025423923300006869AqueousMSKTKTYYTNEVEKKVDDIKDKLVNNEMSLDDAANKLENIENLSLVTDMTDFDEMAYLLKHGD*
Ga0070750_1019004323300006916AqueousMKMKEYATEQVEKQVDDIKDKLVNNEMTLDDAASKLEKIDNISLVTNMVDFDEMA
Ga0070750_1020929013300006916AqueousMKMKEYATEQVEKQVDDIKDKLVNNEMTLDDAANKLEKIDNISLVTNMVDFDEMAYLLKFGD*
Ga0070746_1032265013300006919AqueousNTMSKTKTYYTNEVEKQVDDIKDKLVNNEMSLDDAANKLENIENLSLVTDMTDFDEMAYLLKHGD*
Ga0070746_1036968713300006919AqueousKEKNTMSKTKTYYTNEVEKQVDDIKDKLVNNEMSLDDAANKLENIENISLVTDMTDFDEMAYLLKHGD*
Ga0070746_1043887413300006919AqueousGVNTMKTKMYYTNQVEKQVDDIKDKLINNEMSLDDAANKLENIENLNLVTDMTDFDEMAYLLKHGD*
Ga0070745_109217743300007344AqueousVEKQVDDIKDKLVNNEMTLDDAASKLEKIDNISLVTNMVDFDEMAYLLKFGD*
Ga0070745_136377613300007344AqueousMIKENIMSKTKDYFTSAVEKQVDDIKDKLVNNEMTLDDAANKLEKIDNLSLVTDMTDYDEMAYILKHGD*
Ga0070753_132411223300007346AqueousNTMKMKEYATEQVEKQVDDIKDKLVNNEMTLDDAASKLEKIDNISLVTNMVDFDEMAYLLKFGD*
Ga0099851_101708413300007538AqueousMKMKEYATNEVEKQLDNIKDKLVNNEMSLDDAANKIEKIDNLGLVCTSTDYDE
Ga0099851_109911823300007538AqueousMKNTMNKEDYNMSKTKDWIVDTVNTKLDEIKDKLVNNEMSLDDAASKIEKIDNLDLVCDSTDYDELAYLLKFGD*
Ga0099849_102368423300007539AqueousMKMKEYATNEVEKQLDNIKDKLVNNEMSLDDAANKIEKIDNLGLVCTSTDYDELAYFLKFGD*
Ga0099849_115634813300007539AqueousMINKGENTMKIKEYATVQVEKQVDDIKDKLVNNEMTLDDAANKLENIENIGLITNSIDFDEMAYLLKFGD*
Ga0099849_120638033300007539AqueousNTMSKTKTYYTNEVEKQVDDIKDKLVNNEMSLDDAANKLENIDNLGLVCDSTDYDELAYLLKFGD*
Ga0099849_125741233300007539AqueousTNEVEKQVDDIKDKLVNNEMSLDDAANKLENIENLSLVTDMSDFDEMAYLLKHGD*
Ga0099847_103902633300007540AqueousMKTKMYYTNQVEKQVDDIKDKLINNEMSLDDAANKLENIENLNLVTDMTDFDEMA
Ga0099848_107896423300007541AqueousMNITKENIMSKTKDYFTSAVEKQVDDIKDKLVNNEMTLDDAANKLEKIDNLNLITDMTDYDEMAYILKHGD*
Ga0099846_103038773300007542AqueousMNITKENIMSKTKDYFTSVVEKQVDDIKDKLVNNEMTLDDAANKLEKIDNLSLVTDMTDYDEMAYILKHGD*
Ga0099846_128933613300007542AqueousKTKTYYTNEVEKKVDDIKDKLVNNEMSLDDAANKLENIENISLVTDMTDFDEMAYLLKHGD*
Ga0099850_119749013300007960AqueousMKMKEYATEQVEKQLDDIKDKLVNNEMSLDDAANKIEKIDNLGLVCTNTDYDELAYFLKFGD*
Ga0102960_127926723300009000Pond WaterLLFFLYSITITKEKNTMSKTKTYYTNEVEKQVDDIKDKLVNNEMSLDDAANKLENIENLSLVTDMIDFDEMAYLLKHGD*
Ga0102957_117402533300009027Pond WaterMKMKEYATEQVEKQVDDIKDKLVNNEMTLDDAASKLEKIDNISLVTNMVDFDEIAYLLKFGD*
Ga0114918_1046766413300009149Deep SubsurfaceMKTKNYYTNEVEKQVDDIKDKLVNNEMTLDDAADKLENIENLSLITDMIDYDEMAYLLKFDN*
Ga0114918_1054153323300009149Deep SubsurfaceMKMKEYATEQVEKQVDVIKDKLVNNEMSLDDAANKLEKIDNIGLVTDMVDFDEMAYFLKFGD*
Ga0127401_103524233300009469Meromictic PondMKTKNYYTNEVEKQVDDIKDKLVNNEMTLDDAADKLENIENLSLITDMTDYDEMAYLLKFDN*
Ga0129348_109383713300010296Freshwater To Marine Saline GradientMILLTITKEKNTMSKTKTYYTNEVEKQVDDIKDKLVNNEMSLDDAANKLENIENIGLVTDMIDFDEMAYFLKHGD*
Ga0129345_119586613300010297Freshwater To Marine Saline GradientNTMKTKMYYTNQVEKQVDDIKDKLINNEMSLDDATNKLENIENLNLVTDMTDFDEMAYLLKHGD*
Ga0129342_109369623300010299Freshwater To Marine Saline GradientMSKTKQYFTDQVEKQVDDIKDKLVNNEMSLDDAANKLENIDNLGLVCDSTDYDELAYFLKFGD*
Ga0129342_110748723300010299Freshwater To Marine Saline GradientMSKTKTYYTNEVEKQVDDIKDKLVNNEMSLDDAANKLENIENIGLVTDMIDFDEMAYFLKHGD*
Ga0129351_132278523300010300Freshwater To Marine Saline GradientMKNTMNKEDYNMSKTKDWIVDTVNTKLDEIKDKLVNNEMSLDDAASKIEKIDNLDLVCDSTDYDE
Ga0136656_103894623300010318Freshwater To Marine Saline GradientMILLTITKENTMAKTKTYYTNEVEKQVDDIKDKLINNEMSLDDAANKLENIENLNLVTDMTDFDEMAYLLKHGD*
Ga0136656_121999023300010318Freshwater To Marine Saline GradientYYTNQVEKQVDDIKDKLINNEMSLDDAANKLENIENLNLVTDMIDFDEMAYLLKHGD*
Ga0129344_112602223300012520AqueousMSKTKDWATEQVEQKLDEIKDKLVNNEMSLDDAANKIENIDNLGLVCDSTDYDEIAYILKHGD*
Ga0129344_142982713300012520AqueousFFLYSITITKEKNTMSKIKTYYTNEVEKKVDDIKDKLVNNEMSLDDAANKLENIENIGLVTDMIDFDEMAYLLKHGD*
Ga0129353_163498223300012525AqueousDTINYNKGENTMSKTKTYYTNEVEKKVDDIKDKLVNNEMSLDDAANKLENIENISLVTDMTDFDEMAYLLKHGD*
Ga0129352_1067520613300012528AqueousKMKEYATEQVEKQVDDIKDKLVNNEMTLDDAASKLEKIDNISLVTNMVDFDEMAYLLKFGD*
Ga0160422_1045425313300012919SeawaterMSKTKDWATSKVEQELDSIKDKLVNNMLTLDDAASQIENIDNLGLVCDSTDYDEIAYLLKNGD*
Ga0129343_125123813300012967AqueousKNTMKIKEYATEQVEKQVDDIKDKLVNNEMTLDDAASKLEKIDNISLVTNMVDFDEMAYLLKFGD*
Ga0129343_126528613300012967AqueousTKENTMSKTKTYYTNEVEKQVDDIKDKLVNNEMSLDDAANKLENIENLSLVTDMTDFDEMAYLLKHGD*
Ga0181584_1077375823300017949Salt MarshMSKTKTYYTNEVEKKVDDIKDKLVNNEMSLDDAANKLENIENISLVTDMTDFDEMAYLLKHGD
Ga0181580_1007565953300017956Salt MarshMSKTKTYYTNEVEKKVDDIKDKLVNNEMSLDDAANKLENIENLSLVTDMTDFDEMAYLLKHGD
Ga0181581_1093743913300017962Salt MarshMSKTKDYFTSAVEKQVDDIKDKLVNNEMTLDDAASKLEKIDNISLVTNMVDFDEMAYLLKFGD
Ga0181590_10026796103300017967Salt MarshMSKTKDYFTSAVEKQVDDIKDKLVNNEMTLDDAANKLEKIDNLSLVTDMTDYDEMAYILKHGD
Ga0181590_1016254343300017967Salt MarshMSKTKTYYTNEVEKKVDDIKDKLVNNEMSLDDAANKLENIENIRLVTDMTDFDEMAYLLKRGD
Ga0181601_1070765613300018041Salt MarshMKTKTYYTNEVEKQVDDIKDKLVNNEMSLDDAANKLENIENLSLVTDMTDFDEMAYLLKHGD
Ga0181592_1087098323300018421Salt MarshMSKTKDWIVDTVNKKLDEIKDKLVNNEMSLDDAANKIEKIDNLGLVCDSTDYDELAYTLKYGD
Ga0181568_1139507813300018428Salt MarshMSKTKDWATSKVEQELDGIKDKLVNNELTLDDAASQIENIDNLGLVCDSTDYDELAYLLKNGD
Ga0211708_1004723663300020436MarineWATSKVEQELDSIKDKLVNNTLTLDDAASQIENIDNLGLVCDSTDYDEIAYLLKNGD
Ga0211558_1019610313300020439MarineMSKTKDWATSKVEQELDSIKDKLVNNTLTLDDAASQIENIDNLGLVCDSTDYDEIAYLLKNGD
Ga0213862_1003407763300021347SeawaterTKDYYTSAVEKQVDDIKDKLVNNEMTLDDAANKLEKIDNLSLVTDMTDYDEMAYILKHGD
Ga0213862_1035655523300021347SeawaterMSKTKTYYTNEVEKQVDDIKDKLVNNEMSLDDAANKLENIENLSLVTDMTDFDEMAYLLKHGD
Ga0213858_1014816323300021356SeawaterMAKTKDWATSKVEQELDSIKDKLVNNELTLDDAASQIENIDNLGLVCDSTDYDELAYLLKNGD
Ga0213863_1012353523300021371SeawaterMSKTKDYFTSVVEKQVDDIKDKLVNNEMTLDDAANKLEKIDNLSLVTDMTDYDEMAYILKHGD
Ga0213861_1013588333300021378SeawaterMKMKEYATEQVEKQVDDIKDKLVNNEMTLDDAASKLEKIDNISLVTNMVDFDEMAYLLKFGD
Ga0213861_1049425913300021378SeawaterSKTKTYYTNEVEKQVDDIKDKLVNNEMSLDDAANKLENIENIGLVTDMIDFDEMAYFLKHGD
Ga0213864_1016557143300021379SeawaterVEKQVDDIKDKLVNNEMTLDDAASKLEKIDNISLVTNMVDFDEMAYLLKFGD
Ga0213864_1039628013300021379SeawaterMKMKEYATEQVEKQVDDIKDKLVNNEMTLDDAASKLEKIDNISLVTNMVDFDEMAYL
Ga0213866_1009039643300021425SeawaterMKVKEYATEQVEKQLDDIKDKLVNNEMSLDDAANKIEKIDNLGLVCDSTDYDELAYTLKYGD
Ga0213866_1009681043300021425SeawaterMSKTKTYYTNEVEKQVDDIKDKLVNNEMSLDDAANKLENIENIGLVTDMIDFDEMAYLLKHGD
Ga0222716_10001858393300021959Estuarine WaterMKMKEYATEQVEKQVDDIKDKLVNNEMTLDDAASKLEKIDNIGLVTNMVDFDEMAYLLKFGD
Ga0222716_1002979063300021959Estuarine WaterMKMKEYATEQVEKQVDDIKDKLVNNEMTLDDAASKLEKIDNIDLVTNMVDFDEMAYLLKFGD
Ga0222715_1022625923300021960Estuarine WaterMKTKMYYTNQVEKQVDDIKDKLINNEMSLDDAANKLENIENLNLVTDMTDFDEMAYLLKHGD
Ga0222715_1027277723300021960Estuarine WaterMSKTKDWATEQVEQQLDSIKDKLVNNEMSLDDAANKIEKIDNLGLVCDSTDYDELAYILKHGD
Ga0222714_1008556833300021961Estuarine WaterMIKNYDIINYNKGVNTMKTKMYYTNQVEKQVDDIKDKLINNEMSLDDAANKLENIENLNLVTDMTDFDEMAYLLKHGD
Ga0222714_1012804923300021961Estuarine WaterMKTKNYYTNEVEKQVDDIKDKLVNNEMTLDDAADKLENIENLSLITDMTDYDEMAYSLKFDN
Ga0222714_1015598233300021961Estuarine WaterMSKTKDWATEQVEQQLDSIKDKLVNNEMSLDDAANKIEKIDNLGLVCDSTDYDELAYILKHG
Ga0222714_1042066823300021961Estuarine WaterMKEYATEQVEKQVDDIKDKLVNNEMTLDDAASKLEKIDNISLVTNMVDFDEMAYLLKFGD
Ga0222713_1013292653300021962Estuarine WaterMSKTKQYFTDQVEKQVDDIKDKLVNNEMSLDDAANKLENIDNLGLVCDSTDYDELAYFLKFGD
Ga0222713_1020931723300021962Estuarine WaterMKMKEYATEQVEKQVDDIKDKLVNNEMTLDYAASKLEKIDNIGLVTNMVDFDEMAYLLKFGD
Ga0222713_1039646123300021962Estuarine WaterMKTKNYYTNEVEKQVDDIKDKLVNNEMTLDDAADKLENIENLSLITDMIDYDEMAYLLKFDN
Ga0222719_10005668243300021964Estuarine WaterMSKTKDWVTEQVEQQLDSIKDKLVNNEMSLDDAANKIEKIDNLGLVCDSTDYDELAYILKHGD
Ga0196905_100505993300022198AqueousMINKGENTMKIKEYATVQVEKQVDDIKDKLVNNEMTLDDAANKLENIENIGLITNSIDFDEMAYLLKFGD
Ga0196905_104610713300022198AqueousYTNEVEKQVDDIKDKLVNNEMSLDEAADKLENIENLSLITDMSDYDEMAYSLKFDN
Ga0196905_116203813300022198AqueousMSKTKDWATEQVEQKLDEIKDKLVNNEMSLDDAANKIENIDNLGLVCDSTD
Ga0196901_101708523300022200AqueousMKMKEYATNEVEKQLDNIKDKLVNNEMSLDDAANKIEKIDNLGLVCTSTDYDELAYFLKFGD
Ga0196901_108198923300022200AqueousMSKTKDWIVDTVNTKLDEIKDKLVNNEMSLDDAASKIEKIDNLDLVCDSTDYDELAYLLKFGD
Ga0196901_113931723300022200AqueousMKTKNYYTNEVEKQVDDIKDKLVNNEMSLDEAADKLENIENLSLITDMTDYDEMAYSLKFDN
Ga0255772_1055857613300023176Salt MarshITGIMLAMCLFLXYYNSMNMIKENIMSKTKDYFTSAVEKQVDDIKDKLVNNEMTLDDAANKLEKIDNLSLVTDMTDYDEMAYILKHGD
Ga0208795_100518693300025655AqueousMINKGENTMKVKEYATVQVEKQVDDIKDKLVNNEMTLDDAANKLENIENIGLITNSIDFDEMAYLLKFGD
Ga0208162_102597413300025674AqueousNTMSKTKTYYTNEVEKQVDDIKDKLVNNEMSLDDAANKLENIENLSLVTDMTDFDEMAYLLKHGD
Ga0208019_101052963300025687AqueousMKMKEYATEQVEKQLDDIKDKLVNNEMSLDDAANKIEKIDNLGLVCTSTDYDELAYFLKFGD
Ga0208019_102478583300025687AqueousMKMKEYATEQVEKQLDDIKDKLVNNEMSLDDAANKIEKIDNLGLVCTNTDYDELAYFLKFGD
Ga0208150_121300223300025751AqueousMKMKEYATEQVEKQVDDIKDKLVNNEMTLDDAANKLEKIDNLSLVTDMTDYDEMAYILKHGD
Ga0208899_124160313300025759AqueousMKMKEYATEQVEKQVDDIKDKLVNNEMTLDDAANKLEKIDNISLVTNMVDFDEMAYLLKFGD
Ga0208767_1026441103300025769AqueousTSAVEKQVDDIKDKLVNNEMTLDDAANKLEKIDNLSLVTDMTDYDEMAYILKHGD
Ga0208767_107789433300025769AqueousMSKTKDYFTSAVEKQVDDIKDKLVNNEMTLDDAANKLEKIDNLSLVTDMTDYDEMAYIL
Ga0208427_107109713300025771AqueousITITKEKNTMSKTKTYYTNEVEKKVDDIKDKLVNNEMSLDDAANKIEKIDNLGLVCDSTDYDELAYTLKYGD
Ga0208644_103103113300025889AqueousMKMKEYATEQVEKQVDDIKDKLVNNEMTLDDAASKLEKIDNISLVTNMVDFDEMAYLLKF
Ga0208644_118568413300025889AqueousITKENTMSKTKTYYTNEVEKQVDDIKDKLVNNEMSLDDAANKLENIENLSLVTDMTDFDEMAYLLKHGD
Ga0208880_1000109113300026085MarineMSKTKDWIVDTVNTKLDEIKDKLVNNEMSLDDAASKIEKIDNLGLVCDSTDYDELAYTLKYGD
Ga0348335_135543_76_2853300034374AqueousMIKENIMSKTKDYFTSAVEKQVDDIKDKLVNNEMTLDDAANKLEKIDNLSLVTDMTDYDEMAYILKHGD

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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