Metagenome / Metatranscriptome Family F095797

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095797
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	65 residues
Representative Sequence	MSDQRGFISADQFHPDPYTQSRTAERTLNAAIVHADISRSYEEYLEIFDEFYADDVEGSS
Number of Associated Samples	81
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	35.24 %
% of genes near scaffold ends (potentially truncated)	96.19 %
% of genes from short scaffolds (< 2000 bps)	89.52 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.333 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.905 % of family members)
Environment Ontology (ENVO)	Unclassified (42.857 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.286 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.86% β-sheet: 0.00% Coil/Unstructured: 51.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF00873	ACR_tran	10.48
PF12867	DinB_2	8.57
PF04248	NTP_transf_9	7.62
PF13561	adh_short_C2	5.71
PF02781	G6PD_C	4.76
PF13581	HATPase_c_2	3.81
PF08241	Methyltransf_11	0.95
PF00106	adh_short	0.95
PF01638	HxlR	0.95
PF12697	Abhydrolase_6	0.95
PF00296	Bac_luciferase	0.95
PF02321	OEP	0.95
PF00126	HTH_1	0.95
PF00440	TetR_N	0.95
PF03061	4HBT	0.95
PF00561	Abhydrolase_1	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG2343	Uncharacterized conserved protein, DUF427 family	Function unknown [S]	7.62
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	4.76
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.90
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.95
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.33 %
Unclassified	root	N/A	6.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.33 %
Unclassified	root	N/A	6.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.33 %
Unclassified	root	N/A	6.67 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	27.62 %
Unclassified	root	N/A	6.67 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	20.00 %
Unclassified	root	N/A	6.67 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.71 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	16.19 %
Unclassified	root	N/A	6.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.71 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	3.81 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	16.19 %
Unclassified	root	N/A	6.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.71 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	3.81 %

Name	Rank	Taxonomy	Distribution
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	10.48 %
Unclassified	root	N/A	6.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.71 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	3.81 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	1.90 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	1.90 %

Name	Rank	Taxonomy	Distribution
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	8.57 %
Unclassified	root	N/A	6.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.71 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	3.81 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1.90 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1.90 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.90 %

Name	Rank	Taxonomy	Distribution
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	8.57 %
Unclassified	root	N/A	6.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.71 %
Candidatus Sulfopaludibacter sp. SbA3	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	3.81 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1.90 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1.90 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_12078528	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300001084\|JGI12648J13191_1012823	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300001087\|JGI12677J13195_1003127	Not Available	1481	Open in IMG/M
3300002245\|JGIcombinedJ26739_100517225	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	1071	Open in IMG/M
3300002245\|JGIcombinedJ26739_101538895	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300004082\|Ga0062384_100426297	All Organisms → cellular organisms → Bacteria → Acidobacteria	861	Open in IMG/M
3300004092\|Ga0062389_104668260	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300005437\|Ga0070710_10722151	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300005447\|Ga0066689_10042876	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2386	Open in IMG/M
3300005447\|Ga0066689_10627308	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	676	Open in IMG/M
3300005467\|Ga0070706_101727482	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300005468\|Ga0070707_102092105	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	533	Open in IMG/M
3300005536\|Ga0070697_100062721	Not Available	3034	Open in IMG/M
3300005541\|Ga0070733_11205331	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300005555\|Ga0066692_10043468	All Organisms → cellular organisms → Bacteria	2461	Open in IMG/M
3300005586\|Ga0066691_10164643	All Organisms → cellular organisms → Bacteria	1280	Open in IMG/M
3300005602\|Ga0070762_11125299	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300005921\|Ga0070766_10412034	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	887	Open in IMG/M
3300006028\|Ga0070717_10325749	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1369	Open in IMG/M
3300006176\|Ga0070765_100657956	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300006176\|Ga0070765_101900583	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300006176\|Ga0070765_102037332	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300009012\|Ga0066710_100255840	All Organisms → cellular organisms → Bacteria	2537	Open in IMG/M
3300009012\|Ga0066710_101354450	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300009038\|Ga0099829_10832261	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300009038\|Ga0099829_10951493	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300009088\|Ga0099830_10462509	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300009088\|Ga0099830_10829691	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300009088\|Ga0099830_11519182	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300009089\|Ga0099828_10836579	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300010335\|Ga0134063_10224698	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	888	Open in IMG/M
3300012096\|Ga0137389_10278247	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1412	Open in IMG/M
3300012096\|Ga0137389_11404812	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300012202\|Ga0137363_10753357	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	825	Open in IMG/M
3300012203\|Ga0137399_10760735	All Organisms → cellular organisms → Bacteria → Acidobacteria	816	Open in IMG/M
3300012203\|Ga0137399_11623964	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300012205\|Ga0137362_10232089	Not Available	1592	Open in IMG/M
3300012205\|Ga0137362_11785676	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300012210\|Ga0137378_11414608	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300012361\|Ga0137360_10080465	All Organisms → cellular organisms → Bacteria	2442	Open in IMG/M
3300012362\|Ga0137361_10511480	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1103	Open in IMG/M
3300012363\|Ga0137390_10607545	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1061	Open in IMG/M
3300012582\|Ga0137358_10105270	All Organisms → cellular organisms → Bacteria	1912	Open in IMG/M
3300012923\|Ga0137359_10455938	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
3300012924\|Ga0137413_11249825	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	594	Open in IMG/M
3300017946\|Ga0187879_10723930	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300018468\|Ga0066662_10206195	All Organisms → cellular organisms → Bacteria	1560	Open in IMG/M
3300018468\|Ga0066662_11075112	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	802	Open in IMG/M
3300020580\|Ga0210403_10578477	Not Available	908	Open in IMG/M
3300021171\|Ga0210405_10120735	Not Available	2070	Open in IMG/M
3300021178\|Ga0210408_10012773	All Organisms → cellular organisms → Bacteria	6892	Open in IMG/M
3300021181\|Ga0210388_11521501	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300021401\|Ga0210393_10603345	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300021401\|Ga0210393_10881133	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300021407\|Ga0210383_10391169	All Organisms → cellular organisms → Bacteria	1199	Open in IMG/M
3300021407\|Ga0210383_10541999	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	1004	Open in IMG/M
3300021407\|Ga0210383_10652265	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300021420\|Ga0210394_10035428	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	4447	Open in IMG/M
3300021420\|Ga0210394_10210088	All Organisms → cellular organisms → Bacteria	1698	Open in IMG/M
3300021432\|Ga0210384_11387690	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300021433\|Ga0210391_10527808	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300021474\|Ga0210390_11021734	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	675	Open in IMG/M
3300021477\|Ga0210398_10926839	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300021478\|Ga0210402_10608778	All Organisms → cellular organisms → Bacteria	1012	Open in IMG/M
3300021479\|Ga0210410_10480335	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1110	Open in IMG/M
3300021559\|Ga0210409_11460873	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300022531\|Ga0242660_1205147	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300022557\|Ga0212123_10742761	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300022726\|Ga0242654_10066674	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300022730\|Ga0224570_107980	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300025915\|Ga0207693_10688077	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300025915\|Ga0207693_11068742	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	614	Open in IMG/M
3300025928\|Ga0207700_11212451	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300026354\|Ga0257180_1019206	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300026489\|Ga0257160_1002060	All Organisms → cellular organisms → Bacteria	2118	Open in IMG/M
3300027073\|Ga0208366_1033603	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M
3300027076\|Ga0208860_1028148	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300027635\|Ga0209625_1153343	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300027767\|Ga0209655_10012974	Not Available	2817	Open in IMG/M
3300027767\|Ga0209655_10207864	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	643	Open in IMG/M
3300027842\|Ga0209580_10455197	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	638	Open in IMG/M
3300027846\|Ga0209180_10464615	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300027862\|Ga0209701_10158867	All Organisms → cellular organisms → Bacteria	1375	Open in IMG/M
3300027875\|Ga0209283_10356823	Not Available	958	Open in IMG/M
3300027879\|Ga0209169_10409076	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300027884\|Ga0209275_10258852	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	956	Open in IMG/M
3300027889\|Ga0209380_10000497	All Organisms → cellular organisms → Bacteria	27721	Open in IMG/M
3300028906\|Ga0308309_11227198	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300028906\|Ga0308309_11323270	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	619	Open in IMG/M
3300030580\|Ga0311355_11837718	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300030847\|Ga0075405_10188842	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300031057\|Ga0170834_107609297	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	1083	Open in IMG/M
3300031231\|Ga0170824_124375135	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300031715\|Ga0307476_10825309	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300031718\|Ga0307474_10412282	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300031720\|Ga0307469_11729010	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300031753\|Ga0307477_10782733	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300031754\|Ga0307475_10304933	All Organisms → cellular organisms → Bacteria	1279	Open in IMG/M
3300031754\|Ga0307475_11339621	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300031962\|Ga0307479_10195495	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1992	Open in IMG/M
3300031962\|Ga0307479_10216348	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1888	Open in IMG/M
3300031962\|Ga0307479_10899696	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300031962\|Ga0307479_11325726	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	680	Open in IMG/M
3300032180\|Ga0307471_100748206	All Organisms → cellular organisms → Bacteria	1143	Open in IMG/M
3300032180\|Ga0307471_104290512	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.05%
Host-Associated	Host-Associated	0.95%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.33%
Aquatic	Environmental → Aquatic	5.71%
Plants	Host-Associated → Plants	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.38%
Freshwater	Environmental → Aquatic → Freshwater	4.76%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.95%
Peat	Environmental → Terrestrial → Peat	0.95%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.57%
Loam	Environmental → Terrestrial → Soil → Loam	23.81%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.76%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.95%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	35.24%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.19%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.62%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.76%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.95%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	21.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	11.43%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	9.52%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.76%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.81%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.90%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.95%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.95%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.95%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001084	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1	Environmental	Open in IMG/M
3300001087	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022730	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU2	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026354	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300027073	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF010 (SPAdes)	Environmental	Open in IMG/M
3300027076	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF012 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030847	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_120785282	3300000789	Soil	MSDQRGFISAGQFHTDPYTLSRTAERTLNTAIVHADISRSYEEYLEIFDAFYADDV
JGI12648J13191_10128231	3300001084	Forest Soil	MSDQHSFISLDQFHPDPYTQSRTAERTLNSAIVHAEISRSYEEYLEIFDEFYADGIEGSSETMEEPIRGK
JGI12677J13195_10031272	3300001087	Forest Soil	MSDQPGVISADHYHPDPYTQSRTAERTLNSAIVHAEISRSHEEYLDIFDEFYADDIEGSSETT
JGIcombinedJ26739_1005172251	3300002245	Forest Soil	MSERRRLVSADQFHPDPYTESRIAERTLNAAIVHVDISRSYEEYLELFDQFYSDDIEGSS
JGIcombinedJ26739_1015388951	3300002245	Forest Soil	MSDQCGFALADQFHSDPYTQSRSAERTLNAAIVHADISRSYEEYLEIFDAFYADDVEGTSETTEEPIRGKPG
Ga0062384_1004262972	3300004082	Bog Forest Soil	MSDQRGFFSADQFHPDPYTQSQIAERTLNAAIVQAEIARSYEEYLDILDEFYADDIEGSS
Ga0062389_1046682601	3300004092	Bog Forest Soil	MSDQRGFVSADQSHPDPYAQLRTRERILNTVIIQAESARSYEEYLEIFDEFYADDI
Ga0070710_107221511	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSDQRVFISPGQFHTDPYTQSRTAERTLNAAIVHADIAEATKNLEIFDAFYADDVEG
Ga0066689_100428763	3300005447	Soil	MSDQRGFISADQFHPDPYTQSRTAERTLNAAIVHADISRSYEEYLEIFDEFYADDVEGSSETTEEPIRGKAGVRSLVF
Ga0066689_106273082	3300005447	Soil	MSDQRGVVSADHFRPDPYTQSRIAERTLNAAIVHAEIARSYEEYLVIFDAFYADDVEGSSETTEEPIRGKAGVRSLVF
Ga0070706_1017274821	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MSDQRGFVSSRSLRPDPYTQFRIAERALNAAIVNAEIARSYEEYLQIFDAFYADDVEGSSETTQEPIRGKAGVRSLI
Ga0070707_1020921051	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MSDQRCFVSADHFRPDPYTQSRIAERTLNAAIVNAEIARSYEEYLEIFDAFYADDVEGSSETT
Ga0070697_1000627211	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VVSSQPISFYPDPYTQSRTAERTLNAAIVHADISRSYEEYLEIFDAFYADDVEGSSETTKEPIRGKTGVRSLV
Ga0070733_112053311	3300005541	Surface Soil	MSDQRGFISADQFHRDPYTQSRTAEHTLNAAIVHADISRSYEEYLEIFDEFYAD
Ga0066692_100434681	3300005555	Soil	MSDQRGVVSADHFRPDPYTQSRIAERTLNAAIVHAEIARSYEEYLVIFDAFYAD
Ga0066691_101646431	3300005586	Soil	MSDQRGFISADQFHPDPYTQSRTAERTLNAAIVHADISRSYEEYLEIFDEFYADDVEGSSETTEEPIRGKAGVRSLVFGF
Ga0070762_111252992	3300005602	Soil	MSGQHSFISPDHFHPDPYTQSRTAERTLNSAIVHAEISRSYEEYLEIFDEFYADDIEGSSETMEGPIRGKARVRSLL
Ga0070766_104120341	3300005921	Soil	MNNQHCFISAGQFHPDPYTQSRNAERTLNAAIVHADISRSYEEYLEIFDEFYADDIEGSSETM
Ga0070717_103257493	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSDQRGFLSTDHFRPDPYTQSRIAERTLNAAIVNAEIARSYEEYLEIF
Ga0070765_1006579562	3300006176	Soil	MSDQSGFISADQFHPDPYTQSRNAERTLNAAIVDADISRSYEEYLEIFDEFYADDVEGSSETTE
Ga0070765_1019005832	3300006176	Soil	MSDQRGFVSADPVHPDPYTQSRTAERTLNAAIVHAEIARSYEEYLEIFDEFYA
Ga0070765_1020373321	3300006176	Soil	MSDQHSFISPDHFHPDPYRQSRTAERTLNAAIVDAEISRSYEEYLEIFDEFYADDIEGSS
Ga0066710_1002558401	3300009012	Grasslands Soil	MSDQRGVVSADHFRPDPYTQSRIAERTLNAAIVHAEIARSYEEYLVIFDAFYADDVEGSSETTEEPIRGKAGVRSLVFG
Ga0066710_1013544502	3300009012	Grasslands Soil	MSDQRGFISADQFHPDPYPQFRTAERTLNAAIVHADISRSYEEYLEIFDEFYADDVEGS
Ga0099829_108322612	3300009038	Vadose Zone Soil	MSDQRGFISADQFHPDPCTKSRNAERTLNAAIVHADIGRSYEEYLEIFDEFYADDIEGSN
Ga0099829_109514932	3300009038	Vadose Zone Soil	MSDQRGFVSADHFRPDPYTQSRIAERTLNAAIVHADISRSYEEYLEIFDEFYADDIEGSS
Ga0099830_104625091	3300009088	Vadose Zone Soil	MSDQRAFISADQFHPDPYTQSRTAERTLNAAIVHADISRSYEEYLEIFDEFYADDIEG
Ga0099830_108296911	3300009088	Vadose Zone Soil	MSDQRAFISADQFHPDPYTQSRTAERTLNAAIVHADISRSYEEYLEIFDEFYADDIEGSSET
Ga0099830_115191821	3300009088	Vadose Zone Soil	MSDQRGFISADQFHPDPYTQSRNAERTLNAAIVHADISRSYEEYLEIFDEFYADNIEG
Ga0099828_108365791	3300009089	Vadose Zone Soil	MSDQRGFVSADQFHPDPYAQSRTAERTLNAAIVHADITRSYEEYLEIFDAFYADDIEGSSATVEEPIRGKERVRSLLF
Ga0134063_102246983	3300010335	Grasslands Soil	MSDQRGVVSADHFRPDPYTQSRIAERTLNAAIVHAEIARSYEEYLVIFDAFYADDVEGSSETTEEPI
Ga0137389_102782471	3300012096	Vadose Zone Soil	MSDQRGFISADQFLPDPYTQSRNAERTLNAAIVHADISRSYEEYLEIFDEFYANDVEGSSETTEEPIRGKAGVRSLVFGFL
Ga0137389_114048121	3300012096	Vadose Zone Soil	MSDQRAFISADQFHPDPYTQSRTAERTLNAAIVHADISRSYEEYLEIFDEFYADDIEGS
Ga0137363_107533572	3300012202	Vadose Zone Soil	MSDQRGFISADQFQPDRYTQSRTAERTLNAAIVHADITRSYEEYLEIFEAFYADDVEGSSETTEEPIRGKA
Ga0137399_107607351	3300012203	Vadose Zone Soil	MSDQRGFVSADQFHPDPYAQSRTAERTLNAAIVDADITRSYEEYFEIFDEFYADDIEGSSETMEEPIRGKE
Ga0137399_116239641	3300012203	Vadose Zone Soil	MSDQRGFISADQFHPDPCTKSRNAERTLNAAIVHADISRSYEEYLEIFDEFYADDVEGSSETTE
Ga0137362_102320892	3300012205	Vadose Zone Soil	MGDQRGFISADQFHPDPYTQSRSAERTLNAAIVHADIARGYEEYLDILEAFYADDVEGSS
Ga0137362_117856762	3300012205	Vadose Zone Soil	MSDQRGFISADQFHLDQYRQSRTAERTLNAAIVHADISRSYEEYLEIFDEFYSDDVEGGSETTEEPI
Ga0137378_114146081	3300012210	Vadose Zone Soil	MSDQRGFVSADQFQPDRYTQSRTVERTLYASIVHADITRSYEEYLEIFDAFYADDVEGSSETTEEP
Ga0137360_100804652	3300012361	Vadose Zone Soil	MSDQHSFISPDHFHPDPYTQSRTAEHILNSAIVDAEISRSYEECLEIFD*
Ga0137361_105114801	3300012362	Vadose Zone Soil	MSDQRGFISADQFHPDPYTQSRTAERTLNAAIVHADISRSYEEYLEIFDEFYADDVEGS
Ga0137390_106075452	3300012363	Vadose Zone Soil	MSDQRGFISADQFHPDPYTQSRNAERTLNAAIVHADISRSYEEYLEIFDEFYADNIEGSSDTTEDPIRGNAGVRSLVFGFLVPL
Ga0137358_101052704	3300012582	Vadose Zone Soil	MSDQRGFVSADHFRPDPSTQSRIAERTLNAAIVNAEIARSYEEYLEIFDALYADEVEGSSETT*
Ga0137359_104559382	3300012923	Vadose Zone Soil	MSDQRGFISADQFHPDPYTQSRTAERTLNAAIVHADISRSYEEYLEIFDEFYADDVEGSS
Ga0137413_112498252	3300012924	Vadose Zone Soil	MSDQRAFISADQFHPDPYTQSRTAERTLNTAIVHADISRSYEEYLEIFDEFYADDIEGSSETTKEKIRGKVGVRSLVLG
Ga0187879_107239302	3300017946	Peatland	MSHHRGFVSSDQFHPDPCAQCWTAERTLNAAIIHAEIARGYEEYLEIFDEFYADDIEGSSQTMEEPIRGKAEVRSLLS
Ga0066662_102061951	3300018468	Grasslands Soil	MSDQRGFISADQFHPDAYTQSRTAERTLNAAIVHADISRSYEEYLEIFDEFYADDVEGGSETTEEPIRGKA
Ga0066662_110751122	3300018468	Grasslands Soil	MSDQRGVVSADHFRPDPYTQSRIAERTLNAAIVHAEIARSYEEYLVIFDAFYADDVEGSS
Ga0210403_105784771	3300020580	Soil	MSDQHSSAPANQYHRDPYTQSRIVERTLNAAIVHADIARGYEEYLEIFDAFYADDVEGSS
Ga0210405_101207352	3300021171	Soil	MSNQRSFVSADQFRPDPYTQSRTAEGTLNAAIVHADISRSYEEYLEIFDAFYA
Ga0210408_100127731	3300021178	Soil	MSDQSGFISADQFHPDPYTQSRNAERTLNAAIVHADISRSYEEYLEIFDEFYADDVEGSSETTEE
Ga0210388_115215011	3300021181	Soil	MGDQRGFISAGQFHPDPYTQSRNAERTLNTAIVHADITQSYEEYLEIFDAFYAD
Ga0210393_106033451	3300021401	Soil	MSGQHSFISPDHFHPDPYTQSRTAERTLNSAIVHADISRSYEEYLEIFDEFYAD
Ga0210393_108811331	3300021401	Soil	MSDQPSFISPDHFHPDPYTQSRNAERTLNSAIVHAEISRSYEEYLEIFDEFYADDIEGSSETMEGPIR
Ga0210383_103911692	3300021407	Soil	MSGQHSFISPDHFHPDPYTQSRTAERTLNSAIVHAEISRSYEEYLEIFDEFYADDIEGSSETME
Ga0210383_105419992	3300021407	Soil	MSDHGSFFSADQFHPDPYAQSRIAERSLNAAIVRADIKRSYEEYLELFDDFYADDIEVSS
Ga0210383_106522652	3300021407	Soil	MSNQHVFISADQFHPDSCTQSRTAERTLNAAIVQADISRSYEEYVEIFDEFYADDIEGSSETMEEPIRGKARAHSLLL
Ga0210394_100354283	3300021420	Soil	MGDQRGFISADQFHPDPYTQSRNAERTLNTAIVHADITQSYEEYLEIFDAFYADDVEGSSETTEG
Ga0210394_102100881	3300021420	Soil	MAGQHGFISADPFHPDPYIQSRTAERSLNAAIVHAEISRSYEEYLEIFDEFYADDIEGSSETREE
Ga0210384_113876901	3300021432	Soil	MSGQHSFISPDHFHPDPYTQSRTAERTLNSAIVHADISRSYEEYLEIFDEFYADDIEGSNETMKEPIRGKERVRSLLFSFLA
Ga0210391_105278082	3300021433	Soil	MTGQHGFISADPLHSDPYIQSRTAERTLNAAIVRAEISRSCEEYLEIFDEFYADDIEGSSETMEEPIRGKAKVRSLLFGFLAP
Ga0210390_110217342	3300021474	Soil	MSGQHSFISPDHFHPDPYTQSRTAERTLNSAIVHAEISRSYEEYLEIFDEFYADD
Ga0210398_109268392	3300021477	Soil	MSDQRGFVSANQFHPYPQSRTAERTLNEAIVHADIARSYEEYLDIFDEFYADDIEGSSETTEEPI
Ga0210402_106087781	3300021478	Soil	MSDQHGFVSADQFHPDPYTQSRTAERTLNAAIVHAEITRSYEEYLDIFDEFYADDMKGSS
Ga0210410_104803351	3300021479	Soil	MSNQDVFISADQFHPDPYTQSRNAERTLNAAIVHADISRSYEEYLEIFDEFYADDIEGSS
Ga0210409_114608732	3300021559	Soil	MSNQHVFISADQFHPDSCTQSRTAERTLNAAIVQADISRSYEEYVEIFDEFYADDIE
Ga0242660_12051471	3300022531	Soil	MSDQSGFISADQFHPDPYTQSRNAERTLNAAIVHADISRSYEEYLEIFDEFYADDVEGSSETTEEPIRGKPGLR
Ga0212123_107427611	3300022557	Iron-Sulfur Acid Spring	MSGQHSFISPDHFHPDPYTQSRTAERTLNSAIVHADISRSYEEYLEIFDEFYADDIEGSGETMEGPIRGKARVRSLLS
Ga0242654_100666741	3300022726	Soil	MSGQHSFISPDHFHPDRYTQSRTAERTLNSAIVHADISRSYEEYLEIFDEFYADDVEGSSDTTEEPIPGKPGLRSL
Ga0224570_1079801	3300022730	Rhizosphere	MNNQHGFISADQFHPDQYTQSRNAERTLNAAVDNADISRSYEEYLEIFDEFYADDLVGSSETMKEPLRGKEKV
Ga0207693_106880772	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSDQRGFIFADQFHPDPYTQSRTAEGTLNAAIVHADISRSYEEYLEIFDAFY
Ga0207693_110687421	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSDQPGFFSADQFHPDSYKFRIAERALNAAIVHADITRSYEEYLEIFDAFYADEVEGSSETTEE
Ga0207700_112124511	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MSDQRGFILADQFHPDPYTQSRTAEGTLNAAIVHAEIARSYEEYLEIFDAFYADDVEGSSDTTKE
Ga0257180_10192061	3300026354	Soil	MSDQRAFISADQFHPDPYTQSRTAERTLNAAIVHADISRSYEEYLEIFDEFYADDIEGSSETTKEK
Ga0257160_10020601	3300026489	Soil	MSNQRGFISADQFQPDRYIQSRTAERTLNAAILHADISRSYEEYLEIFDEFYADDFEGSSDTTE
Ga0208366_10336031	3300027073	Forest Soil	MSDQSGFISADQFHPDPYTQSRNAERTLNAAIVHADISRSYEEYLEIFDEFYADDV
Ga0208860_10281481	3300027076	Forest Soil	MSNQHVFISADQFHPDPYTESRNAERTLNAAIVHADISRSYEEYLEILDEFYADDIEGSSETMKEPLRGKERVRSLLFGF
Ga0209625_11533431	3300027635	Forest Soil	MSDQRGFVSADEFHPDPYTQSRTAERTLNSAILHAEITRSYEEYLEIFDEFYADDIEGSSETIKEPIRGK
Ga0209655_100129741	3300027767	Bog Forest Soil	MSDQRSFISADQFHPDPHTQSRNAERTLNAAIVHADISRSYEEYLEIFDEFYA
Ga0209655_102078641	3300027767	Bog Forest Soil	MNSQNGIISDDQFHPDPYIQSRNAERTLNAAIVHADISRSYEEYLEIFDEFYA
Ga0209580_104551972	3300027842	Surface Soil	MSDQYGFVSADQFYPDPYKSRIAERTLNAAIVHADITRRYEEYLEIFDAFYADDVEGSSETTKEPICGKARVR
Ga0209180_104646151	3300027846	Vadose Zone Soil	MSDQRGFVSADHFRPDPYTQSRIAERTLNAAIVHADISRSYEEYLEIFDEFYADDIEG
Ga0209701_101588672	3300027862	Vadose Zone Soil	MSDQRGFVSADEFHPDPYTQSRTAERTLNSAILHAEITRSYEEYLEIFDEFYADDIEGSSETIKEPIRGKAR
Ga0209283_103568232	3300027875	Vadose Zone Soil	MSDQRGFVSADQFHPDPYAQSRTAERTLNAAIVHADITRSYEEYLEIFDAFYADDIEGS
Ga0209169_104090762	3300027879	Soil	MSDHGSFFSADQFHPDPYAQSRIAERSLNAAIVRADIKRSYEEYLELFDDFYADDIEVSSEGLMEPLRGSERVRS
Ga0209275_102588521	3300027884	Soil	MSDQRRVISADQYHPDPYTQSRTAERTLNSAIVHAEISRSHEEYLDIFDEFYADDIEGSSETTQEPIRGK
Ga0209380_1000049723	3300027889	Soil	MSDQRGFISADQFHRDPYTQSRTAEHTLNAAIVHADISRSYEEYLDLLDAFYADAVE
Ga0308309_112271981	3300028906	Soil	MSDQSGFISADQFHPDPYTQSRNAERTLNAAIVDADISRSYEEYLEIFDEFYAYDVEGSSETTEEPIRGKPGLRSL
Ga0308309_113232701	3300028906	Soil	MSDQRGFVSADHFRPDPYMQSRTAERTLNAAIVHADISRSYEEYLGIFDEFYGDDIEGSSETMK
Ga0311355_118377181	3300030580	Palsa	MSDQGGFASAGQFHPDPYAQSRIVERTLNTAIVHADISRGYEEYFDILDEYYADDVEGTSETLGEPVRGKEKVRSL
Ga0075405_101888421	3300030847	Soil	MSDQGGFISAGEFHTDAYTQSRTAERTLNAAIVHADISRSYEEYLVIFDAFYADDIEGSNETMKEPIRGKERVRSLL
Ga0170834_1076092971	3300031057	Forest Soil	MSEQRGFISADQFHPDPYTQSRTAEGTLNAAIVHADITRSYEEYLEIFDEFYADDVA
Ga0170824_1243751351	3300031231	Forest Soil	MSDQGSFISADQFHRDPNTQSRNAERALNAAIVGAEISLGYEEYLEIFDEFYADDIEGSSDTTEEPIRGKAGVRSLLFGFFGSASYNG
Ga0307476_108253091	3300031715	Hardwood Forest Soil	MSDQHSFVSPDHFHPDPYTQSRTAERALNSAIVHAEISRSYEEYLEIFDEFYADDIEGS
Ga0307474_104122821	3300031718	Hardwood Forest Soil	MSDQHSFVSPDHFHPDPYTQSRTAERALNSAIVHAVISRSYEEYLEIFDEFYADDI
Ga0307469_117290101	3300031720	Hardwood Forest Soil	MSDQRGFISVGQFHPDPYTQSRNAERTLNAAIVHADISRSYEEYLEIFDEFYADDVEGSSETAEEPIRGKP
Ga0307477_107827332	3300031753	Hardwood Forest Soil	MSDQHSFVSPDHYHPDPYTTSQTAERILNAAILNAEISRSFEEYLEIFDEFYADDIEG
Ga0307475_103049332	3300031754	Hardwood Forest Soil	MSDHRGFISAGQFHTDPYTQSRTAERILNAAIVHADISRSYEEYLEIFDAFYA
Ga0307475_113396211	3300031754	Hardwood Forest Soil	MSDQHGFISADQYQPDRYTQSRTAERTLNAAIVHADITRSYEEYLEIFEAFYA
Ga0307479_101954951	3300031962	Hardwood Forest Soil	MSDQRGFISADQFHPDPYTQSRTAERTLNAAIVDADITRSYEEYLEIFDAFYADDVEGSSETTEESIHGKAGVRS
Ga0307479_102163482	3300031962	Hardwood Forest Soil	MSDQRGFISADQFHPDPYAQSRTSDRTLNAAIVRADISRSYEEYLEIFDEFYADDIEGSSNTTEEPIRGKAGVRAS
Ga0307479_108996962	3300031962	Hardwood Forest Soil	MSDQRDVVSAEHFRPDPYTQSRNAERTLNAAIVHADITRSYEEYLEIFEAFYADDVEGSSETTEEPIRGKAGVRSLVFG
Ga0307479_113257262	3300031962	Hardwood Forest Soil	MSDQRGFISADQFQPDRYTQSRTAERTLNAAIVSADISRGYEEYLEIFDAFYSDDIEGSSETTEEPIRGKAGVRS
Ga0307471_1007482061	3300032180	Hardwood Forest Soil	MSDQHSFVSPDHFHPDPYTQSRTAERALNSAIVHAEISRSYQEYLEIFDEFYADDIVGSSDTKEEPIRGKAGVRSLV
Ga0307471_1042905121	3300032180	Hardwood Forest Soil	MSDQRGFISADQFHPDPYTRSRTAERTLNAAIVHADISRSYEEYLEIFDAFYADDIEGSSDTTEE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095797

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences