Metagenome / Metatranscriptome Family F095804

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095804
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	73 residues
Representative Sequence	MKTLIIFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTGALQAQLQRFGDQSKGLNQPKTENNSPTPAPSVTGRS
Number of Associated Samples	58
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	74.29 %
% of genes near scaffold ends (potentially truncated)	14.29 %
% of genes from short scaffolds (< 2000 bps)	60.00 %
Associated GOLD sequencing projects	55
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.905 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil (21.905 % of family members)
Environment Ontology (ENVO)	Unclassified (35.238 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.429 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 48.04% β-sheet: 0.00% Coil/Unstructured: 51.96%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF09917	DUF2147	21.36
PF05235	CHAD	6.80
PF08281	Sigma70_r4_2	5.83
PF10944	DUF2630	5.83
PF11295	DUF3096	5.83
PF13714	PEP_mutase	3.88
PF12844	HTH_19	3.88
PF07638	Sigma70_ECF	2.91
PF00106	adh_short	1.94
PF01594	AI-2E_transport	1.94
PF01381	HTH_3	1.94
PF00294	PfkB	0.97
PF00581	Rhodanese	0.97
PF00534	Glycos_transf_1	0.97
PF00440	TetR_N	0.97
PF04542	Sigma70_r2	0.97
PF00118	Cpn60_TCP1	0.97
PF02954	HTH_8	0.97
PF02272	DHHA1	0.97
PF06305	LapA_dom	0.97
PF00480	ROK	0.97
PF13378	MR_MLE_C	0.97
PF03466	LysR_substrate	0.97
PF00702	Hydrolase	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG3025	Inorganic triphosphatase YgiF, contains CYTH and CHAD domains	Inorganic ion transport and metabolism [P]	6.80
COG5607	CHAD domain, binds inorganic polyphosphates	Function unknown [S]	6.80
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	3.88
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	1.94
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.94
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.97
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.97
COG3771	Lipopolysaccharide assembly protein YciS/LapA, DUF1049 family	Cell wall/membrane/envelope biogenesis [M]	0.97
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.90 %
Unclassified	root	N/A	38.10 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.90 %
Unclassified	root	N/A	38.10 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.90 %
Unclassified	root	N/A	38.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.10 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	7.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.10 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	5.71 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.10 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5.71 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.10 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5.71 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.10 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5.71 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.10 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5.71 %
unclassified Methylibium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium → unclassified Methylibium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.10 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5.71 %
Methylibium sp. T29	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium → unclassified Methylibium → Methylibium sp. T29	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10002366	All Organisms → cellular organisms → Bacteria	16478	Open in IMG/M
3300001593\|JGI12635J15846_10073194	Not Available	2529	Open in IMG/M
3300001593\|JGI12635J15846_10086296	All Organisms → cellular organisms → Bacteria	2284	Open in IMG/M
3300001867\|JGI12627J18819_10006601	All Organisms → cellular organisms → Bacteria	4465	Open in IMG/M
3300001867\|JGI12627J18819_10276386	All Organisms → cellular organisms → Bacteria → FCB group	676	Open in IMG/M
3300002245\|JGIcombinedJ26739_100212552	All Organisms → cellular organisms → Bacteria	1827	Open in IMG/M
3300002906\|JGI25614J43888_10002608	All Organisms → cellular organisms → Bacteria	5586	Open in IMG/M
3300002906\|JGI25614J43888_10164222	Not Available	596	Open in IMG/M
3300002917\|JGI25616J43925_10100298	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300004135\|Ga0058884_1397764	Not Available	1110	Open in IMG/M
3300004631\|Ga0058899_10055450	All Organisms → cellular organisms → Bacteria	2523	Open in IMG/M
3300004631\|Ga0058899_11732839	Not Available	694	Open in IMG/M
3300004631\|Ga0058899_12200657	Not Available	1692	Open in IMG/M
3300004631\|Ga0058899_12264721	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1509	Open in IMG/M
3300004631\|Ga0058899_12269107	Not Available	721	Open in IMG/M
3300005332\|Ga0066388_101257024	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1272	Open in IMG/M
3300005436\|Ga0070713_100086388	All Organisms → cellular organisms → Bacteria	2689	Open in IMG/M
3300005436\|Ga0070713_100106265	All Organisms → cellular organisms → Bacteria	2440	Open in IMG/M
3300005437\|Ga0070710_11127548	Not Available	577	Open in IMG/M
3300005921\|Ga0070766_10218432	All Organisms → cellular organisms → Bacteria	1199	Open in IMG/M
3300006176\|Ga0070765_100373152	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300006176\|Ga0070765_100746129	Not Available	925	Open in IMG/M
3300006176\|Ga0070765_101408483	Not Available	657	Open in IMG/M
3300006893\|Ga0073928_10001148	All Organisms → cellular organisms → Bacteria	52892	Open in IMG/M
3300006893\|Ga0073928_10001469	All Organisms → cellular organisms → Bacteria	45097	Open in IMG/M
3300006893\|Ga0073928_10001725	All Organisms → cellular organisms → Bacteria	40661	Open in IMG/M
3300006893\|Ga0073928_10004060	All Organisms → cellular organisms → Bacteria	22184	Open in IMG/M
3300006893\|Ga0073928_10015979	All Organisms → cellular organisms → Bacteria	8120	Open in IMG/M
3300006893\|Ga0073928_10036675	Not Available	4602	Open in IMG/M
3300006893\|Ga0073928_10039981	All Organisms → cellular organisms → Bacteria	4356	Open in IMG/M
3300006893\|Ga0073928_10145315	All Organisms → cellular organisms → Bacteria	1919	Open in IMG/M
3300010048\|Ga0126373_10055813	All Organisms → cellular organisms → Bacteria	3525	Open in IMG/M
3300010048\|Ga0126373_10165615	Not Available	2115	Open in IMG/M
3300010376\|Ga0126381_100270568	Not Available	2313	Open in IMG/M
3300011120\|Ga0150983_10091559	Not Available	760	Open in IMG/M
3300011120\|Ga0150983_11876202	Not Available	1727	Open in IMG/M
3300011120\|Ga0150983_15798681	Not Available	984	Open in IMG/M
3300011411\|Ga0153933_1005467	All Organisms → cellular organisms → Bacteria	3374	Open in IMG/M
3300012177\|Ga0153943_1111954	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	586	Open in IMG/M
3300012181\|Ga0153922_1142056	Not Available	559	Open in IMG/M
3300012362\|Ga0137361_11044146	Not Available	737	Open in IMG/M
3300020582\|Ga0210395_10546542	Not Available	871	Open in IMG/M
3300021046\|Ga0215015_10350896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium → unclassified Methylibium → Methylibium sp. T29	1579	Open in IMG/M
3300021168\|Ga0210406_10053615	All Organisms → cellular organisms → Bacteria	3519	Open in IMG/M
3300021171\|Ga0210405_10684983	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300021178\|Ga0210408_11074654	Not Available	620	Open in IMG/M
3300021180\|Ga0210396_10060128	All Organisms → cellular organisms → Bacteria	3469	Open in IMG/M
3300021361\|Ga0213872_10046636	All Organisms → cellular organisms → Bacteria → Proteobacteria	1972	Open in IMG/M
3300021361\|Ga0213872_10057341	All Organisms → cellular organisms → Bacteria	1763	Open in IMG/M
3300021361\|Ga0213872_10069581	Not Available	1587	Open in IMG/M
3300021361\|Ga0213872_10125533	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1133	Open in IMG/M
3300021372\|Ga0213877_10022846	All Organisms → cellular organisms → Bacteria	1695	Open in IMG/M
3300021384\|Ga0213876_10005624	All Organisms → cellular organisms → Bacteria	6881	Open in IMG/M
3300021404\|Ga0210389_10370528	Not Available	1125	Open in IMG/M
3300021406\|Ga0210386_10359526	Not Available	1252	Open in IMG/M
3300021420\|Ga0210394_10648477	Not Available	927	Open in IMG/M
3300021439\|Ga0213879_10006680	All Organisms → cellular organisms → Bacteria	2338	Open in IMG/M
3300021439\|Ga0213879_10142205	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300021441\|Ga0213871_10014442	All Organisms → cellular organisms → Bacteria	1873	Open in IMG/M
3300021444\|Ga0213878_10035137	All Organisms → cellular organisms → Bacteria	1914	Open in IMG/M
3300021444\|Ga0213878_10086187	All Organisms → cellular organisms → Bacteria	1263	Open in IMG/M
3300021444\|Ga0213878_10338181	Not Available	649	Open in IMG/M
3300021479\|Ga0210410_10119949	All Organisms → cellular organisms → Bacteria	2331	Open in IMG/M
3300021479\|Ga0210410_11419944	Not Available	587	Open in IMG/M
3300021559\|Ga0210409_10689074	Not Available	893	Open in IMG/M
3300022557\|Ga0212123_10000182	All Organisms → cellular organisms → Bacteria	215027	Open in IMG/M
3300022557\|Ga0212123_10000190	All Organisms → cellular organisms → Bacteria	210878	Open in IMG/M
3300022557\|Ga0212123_10001545	All Organisms → cellular organisms → Bacteria	63406	Open in IMG/M
3300022557\|Ga0212123_10001545	All Organisms → cellular organisms → Bacteria	63406	Open in IMG/M
3300022557\|Ga0212123_10001581	All Organisms → cellular organisms → Bacteria	62455	Open in IMG/M
3300022557\|Ga0212123_10001887	All Organisms → cellular organisms → Bacteria	54523	Open in IMG/M
3300022557\|Ga0212123_10001887	All Organisms → cellular organisms → Bacteria	54523	Open in IMG/M
3300022557\|Ga0212123_10004716	All Organisms → cellular organisms → Bacteria	25385	Open in IMG/M
3300024288\|Ga0179589_10269693	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300025906\|Ga0207699_10249320	All Organisms → cellular organisms → Bacteria	1223	Open in IMG/M
3300026304\|Ga0209240_1000202	All Organisms → cellular organisms → Bacteria	24263	Open in IMG/M
3300026304\|Ga0209240_1025139	All Organisms → cellular organisms → Bacteria	2278	Open in IMG/M
3300026319\|Ga0209647_1150467	Not Available	984	Open in IMG/M
3300027537\|Ga0209419_1061546	Not Available	734	Open in IMG/M
3300027609\|Ga0209221_1004109	All Organisms → cellular organisms → Bacteria	3630	Open in IMG/M
3300027609\|Ga0209221_1010751	All Organisms → cellular organisms → Bacteria	2357	Open in IMG/M
3300027648\|Ga0209420_1070687	Not Available	1018	Open in IMG/M
3300027889\|Ga0209380_10408809	Not Available	795	Open in IMG/M
3300027908\|Ga0209006_10418999	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
3300027908\|Ga0209006_10591842	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300027908\|Ga0209006_11155891	Not Available	607	Open in IMG/M
3300028047\|Ga0209526_10449182	Not Available	848	Open in IMG/M
3300028906\|Ga0308309_10017519	All Organisms → cellular organisms → Bacteria	4656	Open in IMG/M
3300029636\|Ga0222749_10036865	Not Available	2105	Open in IMG/M
3300029636\|Ga0222749_10420643	Not Available	711	Open in IMG/M
3300031057\|Ga0170834_101662064	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	721	Open in IMG/M
3300031715\|Ga0307476_10092027	All Organisms → cellular organisms → Bacteria	2130	Open in IMG/M
3300031715\|Ga0307476_11278991	Not Available	536	Open in IMG/M
3300031718\|Ga0307474_10035447	Not Available	3669	Open in IMG/M
3300031718\|Ga0307474_10180445	All Organisms → cellular organisms → Bacteria	1602	Open in IMG/M
3300031753\|Ga0307477_10016463	All Organisms → cellular organisms → Bacteria	5044	Open in IMG/M
3300031753\|Ga0307477_10482479	Not Available	844	Open in IMG/M
3300031754\|Ga0307475_10128967	All Organisms → cellular organisms → Bacteria	1997	Open in IMG/M
3300031754\|Ga0307475_10488477	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300031754\|Ga0307475_10542731	Not Available	933	Open in IMG/M
3300031962\|Ga0307479_10742479	All Organisms → cellular organisms → Bacteria → FCB group	959	Open in IMG/M
3300031962\|Ga0307479_11433348	Not Available	649	Open in IMG/M
3300031962\|Ga0307479_12010137	Not Available	527	Open in IMG/M
3300032261\|Ga0306920_102274388	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	752	Open in IMG/M
3300032898\|Ga0335072_10237310	All Organisms → cellular organisms → Bacteria	2113	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.43%
Host-Associated	Host-Associated	8.57%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.19%
Aquatic	Environmental → Aquatic	15.24%
Plants	Host-Associated → Plants	5.71%
Fungi	Host-Associated → Fungi	2.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.19%
Thermal Springs	Environmental → Aquatic → Thermal Springs	15.24%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.76%
Mycelium	Host-Associated → Fungi → Mycelium	2.86%
Roots	Host-Associated → Plants → Roots	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.86%
Loam	Environmental → Terrestrial → Soil → Loam	32.38%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	15.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.76%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	2.86%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.95%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	28.57%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.71%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	15.24%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.43%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.81%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	2.86%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	21.90%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	15.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.38%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	11.43%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	5.71%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.71%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.86%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	2.86%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.95%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004135	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011411	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ017 MetaG	Host-Associated	Open in IMG/M
3300012177	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ027 MetaG	Host-Associated	Open in IMG/M
3300012181	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG	Host-Associated	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021441	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1	Host-Associated	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_100023664	3300001593	Forest Soil	MRTLVAFLLGLILGGVAVLFLPDPRRNELNAEIRTQTDALQTELHKFGDQLKTLSLPKPENASPSPSASASGNP*
JGI12635J15846_100731945	3300001593	Forest Soil	MKTLIIFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTVALQAQLQRFGDQVKGMNQPKTENSSPTPAPSVTGRS*
JGI12635J15846_100862963	3300001593	Forest Soil	MKTLIIFLLGLIIGAVAMLFLPDPRSDELNAEIRTQTGALQAQLHRLGNQFKGAEQPKTENSSPSPAPSVTGRS*
JGI12627J18819_100066016	3300001867	Forest Soil	MKTLIIFLLGLIIGGVATLFLPNTRRDEFNAEIRTQTGALQAHLQQFGDQVKGAKQPKTEINSPIPAPSVAGRS*
JGI12627J18819_102763862	3300001867	Forest Soil	MRALVTFLLGLIIGGLAILFLPDPRRDELNAEVRKQTDALQTEIHQFGDQLKTLSLPKPDKPSASPSATGAR*
JGIcombinedJ26739_1002125522	3300002245	Forest Soil	MKTLIIFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTGALQAQLQRLGGXFNGMNQPKTENSSPTPAPSVTGRS*
JGI25614J43888_100026085	3300002906	Grasslands Soil	MRTLVAFLLGLIIGGVAILFLPDPRRDELNAEIRAQTDALQAQLHQFGDQLKTLSLPKPEKSPSPSATATP*
JGI25614J43888_101642221	3300002906	Grasslands Soil	LLFAAGNLEQGIMRTLVAFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTEALQTQLRQFGDQFKGMKLPQPENSSPTPSPSATPK*
JGI25616J43925_101002981	3300002917	Grasslands Soil	MRTLVAFLLGLIIGGVAILFLPDPRRDELNAEIRAQTDALQAQLHQFGDQLKTLSLPKPEKSPSPS
Ga0058884_13977644	3300004135	Forest Soil	MKTLIIFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTGALQAQLQRFGDEFKGMNQPKTENSSPTPAPSVTGRS*
Ga0058899_100554506	3300004631	Forest Soil	MKTLIIFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTGALQAQLQRFGDQVKGTNQPKTENNSPTPAPSVTGRS*
Ga0058899_117328391	3300004631	Forest Soil	LLFAALNLEQSIMRTLVAFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTEALQTQLRQFGEQFKDLKLPHPENSSPTPSPRATPQ*
Ga0058899_122006571	3300004631	Forest Soil	MKILIIFLLGLTIGGVAMLFLPNTRRDEFNAEIRTQTGALQAHLQQFGDQFKGEKQSKTETNSPTPAPTVAGRS*
Ga0058899_122647212	3300004631	Forest Soil	MKTLIIFLLGLIIGGVAMLFLPDTRRDEFNAEIRTQAGALQAHLQQFGDQFKGAKQPKTENNSPTPAPSLTGRS*
Ga0058899_122691071	3300004631	Forest Soil	MKTLIIFLLGLIIGGVAMLFLPDSRRDELNAEIRTQTGALQAQLQRFGDQSKGANQPKTENNSPTPAPSVTGRS*
Ga0066388_1012570242	3300005332	Tropical Forest Soil	MRTLVAFLLGVILGGLAMLFLPDPRRDELNAEVRKQTDALQAQLHQFGDQLKTLSLPKPEDKASPSPSASAAH*
Ga0070713_1000863882	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKTLIIFLLGLIIGGVATLFLPNTRRDEFNAEIRTQTGALQAHLQQFGDQFKGPKQPKTETNSPTPAPSVAGRG*
Ga0070713_1001062652	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKTLVAFLLGLILGGLGMLFLPDPRRDELNAEVRKQTDALQTQVHQFGDQLKTLSLPKPEEKASPSPSASATQ*
Ga0070710_111275481	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MKTLIIFLLGLIIGGVATLFLPNTRRDEFNAEIRTQTGALQAHLQQFGDQIKGAKQPKTETNSPTPAPSVAGRS*
Ga0070766_102184322	3300005921	Soil	MKTLIIFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTGALQAQLQRFGDQSKGLNQPKTENNSPTPAPSVVGRS*
Ga0070765_1003731523	3300006176	Soil	MKTLIIFLLGLIIGGVAMLFLPDARRDELNAEIRTQTGALQAQLQRFGDQSKGLNQPKTENNSPTPAPSVTGRS*
Ga0070765_1007461291	3300006176	Soil	MRTLVAFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTEALQTQLRQFGDQLKGMKLPQPENSSPTPSPSATPK
Ga0070765_1014084832	3300006176	Soil	MKMLIIFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTVALQAQLQRFGDQLKGMNQPKTENSSPTPAPSVTGRS*
Ga0073928_1000114839	3300006893	Iron-Sulfur Acid Spring	MRTLVAFLLGLIIGGVAVLFLPDPRRNELNAEIRTQTDALQTELHKFGDQLKTLSLPKPENASPSPSASASGTP*
Ga0073928_1000146936	3300006893	Iron-Sulfur Acid Spring	MRTLVAFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTEALQTQLRQFGDQIKGMKLPQPENTSPTASPSATPK*
Ga0073928_1000172538	3300006893	Iron-Sulfur Acid Spring	MKTLIIFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTVALQAQLQRFGDQVKGMNQPKTENNSPTPAPSVTGRS*
Ga0073928_1000406020	3300006893	Iron-Sulfur Acid Spring	MKTLIIFLLGLIIGGVAMLFLPDSRRDELNAEIRTQTGALQAQLQRFDDQSKGLNQPKTENNSPTPAPSVVGRS*
Ga0073928_100159797	3300006893	Iron-Sulfur Acid Spring	MKTLIIFFLGLIVGGVAMLFLPDTRRDEFNAEIRTQTVALQAQLQRFGDQLKGMNQPKTENSSPTPAPSVTGRS*
Ga0073928_100366755	3300006893	Iron-Sulfur Acid Spring	MRTLVAFLLGLIIGGVAMLFLPDPRRDELNAEIRTKTEALETQLRQFGEQFKDSKLPQPENKSPTASPSATPQ*
Ga0073928_100399817	3300006893	Iron-Sulfur Acid Spring	MKTLIIFLLGLTIGGVAMLFLPDTRRDQFNAEIRTQTGALQARLQQFGDQFKGAKQPKTENNSPTPAPTVTGSS*
Ga0073928_101453153	3300006893	Iron-Sulfur Acid Spring	MKTLIIFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTGALQAQLQRFGDQFNGTNQPKTGNNSPTPAPSVTGRS*
Ga0126373_100558133	3300010048	Tropical Forest Soil	MRTLVAFLLGVILGGLAMLFLPDPRRDELNAEVRKQTDALQTQLHQFGDQLKTLSLPKPEDKASPSPSASAAD*
Ga0126373_101656152	3300010048	Tropical Forest Soil	MKSLVAFLLGLILGGLGMLFLPDPRRDELNAEVRKQTDALQTQVHQFGDQLKTLTLPKPEEKASPSPSSSPAQ*
Ga0126381_1002705684	3300010376	Tropical Forest Soil	LGLILGGLGMLFLPDPRRDELNAEVRKQTDALQTQVHQFGDQLKTLTLPKPEEKASPSPSSGPAQ*
Ga0150983_100915592	3300011120	Forest Soil	MRTLVAFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTEALQTQLRQFGDQFKDIKLPQPENSSPTASPKGDAQ*
Ga0150983_118762024	3300011120	Forest Soil	MKILIIFLLGLTIGGVAMLFLPNTRREEFNAEIRTQTGALQAHLQQFGDQFKGEKQSKTETNSPTPAPTVAGRS*
Ga0150983_157986812	3300011120	Forest Soil	MKTLIIFLLGLIIGGVATLLLPNTRRDEFNAEIRTQTGALQAHLQEFGDQFKGPKQPKTETNSPTPAPSVAGRG*
Ga0153933_10054677	3300011411	Attine Ant Fungus Gardens	MRTLVAFLLGLIIGGVAVLFLPDPRRNELNAEIRTQTDALQTQLHQFGDQLKTLTLPKPEQSSPSPSPSASATP*
Ga0153943_11119542	3300012177	Attine Ant Fungus Gardens	MRTLVAFLLGLIIGGAAVLFLPDPRRNELNAEVRTQTDALQAELHQFGDQLKTLSLPKPGNSSPSPSPSATGTQ*
Ga0153922_11420561	3300012181	Attine Ant Fungus Gardens	MKTLIIFLLGLIIGGVATLFLPNTQRDEFNAEIRTQTGALQAHLQQFGDQFKGEKQSKTETNSPTPAPTVAGRS*
Ga0137361_110441462	3300012362	Vadose Zone Soil	SFLLGLIIGGVGILFLPDPRRDELNAEIRAQTDALQTQLHQFGDQLKTLSLPKPEKSPSPSATATP*
Ga0210395_105465421	3300020582	Soil	MKTLIIFLLGLIIGGVATLFLPNTRRDEFNAEIRTQTGALQAHLQQFGDQFKGPKQPKTETNSPTPAPSVAGRG
Ga0215015_103508962	3300021046	Soil	LLFAALNLEQSIMRTLVAFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTEALQTQLRQFGEQFKDVKLPHPENSSPTPSPRATPQ
Ga0210406_100536151	3300021168	Soil	MKTLIIFLLGLIIGGVATLLLPNTRRDEFNAEIRTQTGALQAHLQEFGDQFKGPKQPKTETNSPTPAPSVAGRG
Ga0210405_106849831	3300021171	Soil	MKTLIIFLLGLIIGGVAMLFLPDTRRDEFKAEIRTQTGALQAHLQQFGDQFKGAKQPKTENNSPTPAPSLTGRS
Ga0210408_110746541	3300021178	Soil	MKTLIIFLLGLIIGGVAMLFLPDTRRDELNAEIRNQTGALQAHLQQFGDQFRGAKQPKTENNSPTPAPSVTGRS
Ga0210396_100601282	3300021180	Soil	MKTLIIFLLGLIIGGVATLFLPNTRRDEFNAEIRTQTGALQAHLQEFGDQFKGPKQPKTETNSPTPAPSVAGRS
Ga0213872_100466362	3300021361	Rhizosphere	MRSLVAFLLGVILGGLAMLFLPDPRRDELNAEVRKQTDALQTQLHQFGDQLKTLSLPKPEEKASPSPSASAAH
Ga0213872_100573412	3300021361	Rhizosphere	MRTLVAFLLGLIIGGLAMLFLPDPRRDELNAEIRKQTDGLQTQLHQFGDQLKTLSLPKPENASPSPSATGTQ
Ga0213872_100695812	3300021361	Rhizosphere	MRTLVAFLLGLILGGIAVLFLPDPRRDELNAEVRKQTDALQTQLHSFGDQLKTLSLPKPETAASPSPSATGTKQ
Ga0213872_101255332	3300021361	Rhizosphere	MRTLVAFLLGLILGGLAMLFLPDPRRDELNAEVRKQTDALQTQLRQFGDQLKTVSLPKPEKASPSPSTTGTP
Ga0213877_100228462	3300021372	Bulk Soil	MRSLVAFLLGIILGGLAMLFLPDPRRDELNAEVRKQTDALQTQLHQFGDQLKTLSLPKPEEKASASPSASAAP
Ga0213876_100056247	3300021384	Plant Roots	MRSLVAFLLGLILGGLGMLFLPDPRRDELNAEVRKQTEALQTQVHQFGDQLKTLTLPKPEEKASPSPTSSPAQ
Ga0210389_103705282	3300021404	Soil	MKTLIIFLLGLIIGGVATLFLPNTRRDEFNAEIRTQTGALQAHLQQFGDQIKGVKQPKTETNSPTPAPSVAGRS
Ga0210386_103595261	3300021406	Soil	LGLIIGGVATLFLPNTRRDEFNAEIRTQTGALQAHLQQFGDQIKGVKQPKTETNSPTPAPSVAGRS
Ga0210394_106484772	3300021420	Soil	LVAFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTEALQTQLRQFGDQLKGMKLPQPENSSPTPSPSATPK
Ga0213879_100066802	3300021439	Bulk Soil	MRTLVAFLLGLILGGIAMLFLPDPRRDELNAEVRKQTDALQTQLHSFGDQLKTLSLPKPEEKASPSPSATGAQ
Ga0213879_101422051	3300021439	Bulk Soil	MRSLVAFLLGVILGGLAMLFLPDPRRDELNAEVRKQTDALQTQLHQFGDQLKTLSLPKPEEKASPSPSASGAH
Ga0213871_100144421	3300021441	Rhizosphere	MRSLVAFLLGIILGGLAMLFLPDPRRDELNAEVRKQTDALQTQLHQFGDQLETLSLPKPEEKASASPSASAAP
Ga0213878_100351373	3300021444	Bulk Soil	MRTLVAFLLGLILGGLAMLFLPDPRRDELNAEVRKQTDALQTQLHQFGDQLKTLSLPKPDEKASPSPSASEKP
Ga0213878_100861871	3300021444	Bulk Soil	MRTLVAFLLGLIIGGVAILFLPDPRRDELNAEIRTQTDALQNQLHQFGDQLKTLSLPKLEKDSPSPSPS
Ga0213878_103381811	3300021444	Bulk Soil	VTFLLGLIIGAIAILFLPDPRRDELNAEVRAQTGAFQAELRKFGDQLKNVTLPKPESGSPTPTASPSGTPR
Ga0210410_101199493	3300021479	Soil	MRTLVAFLLGLIIGGVAILFLPDPRRDELNAEIRAQTDALQAQLHQFGDQLKTLSLPKLEKSPSPSATATP
Ga0210410_114199441	3300021479	Soil	MKTLIIFLLGLIIGGVAMLFLPDARRDELNAEIRTQTGALQAQLQRFGDQSKGSNQPKTENNSPTPAPSVTGRS
Ga0210409_106890742	3300021559	Soil	MKTLIIFLLGLIIGGVATLFLPNTRRDEFNAEIRTQTGALQAHLQEFGDQFKGPKQPKTETNSPTPAPSVAGRG
Ga0212123_10000182152	3300022557	Iron-Sulfur Acid Spring	MRTLVAFLLGLIIGGVAVLFLPDPRRNELNAEIRTQTDALQTELHKFGDQLKTLSLPKPENASPSPSASASGTP
Ga0212123_1000019041	3300022557	Iron-Sulfur Acid Spring	MKTLIIFLLGLIIGGVAMLFLPDSRRDELNAEIRTQTGALQAQLQRFGDQSKGLNQPKTENNSPTPAPSVVGRS
Ga0212123_1000154539	3300022557	Iron-Sulfur Acid Spring	MRTLVAFLLGLIIGGVAMLFLPDPRRDELNAEIRTKTEALETQLRQFGEQFKDSKLPQPENKSPTASPSATPQ
Ga0212123_1000154556	3300022557	Iron-Sulfur Acid Spring	MKTLIIFFLGLIVGGVAMLFLPDTRRDEFNAEIRTQTVALQAQLQRFGDQLKGMNQPKTENSSPTPAPSVTGRS
Ga0212123_1000158115	3300022557	Iron-Sulfur Acid Spring	MKTLIIFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTVALQAQLQRFGDQVKGMNQPKTENNSPTPAPSVTGRS
Ga0212123_1000188725	3300022557	Iron-Sulfur Acid Spring	MRTLVAFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTEALQTQLRQFGDQIKGMKLPQPENTSPTASPSATPK
Ga0212123_1000188763	3300022557	Iron-Sulfur Acid Spring	MKTLIIFLLGLTIGGVAMLFLPDTRRDQFNAEIRTQTGALQARLQQFGDQFKGAKQPKTENNSPTPAPTVTGSS
Ga0212123_1000471622	3300022557	Iron-Sulfur Acid Spring	MKTLIIFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTGALQAQLQRFGDQFNGTNQPKTGNNSPTPAPSVTGRS
Ga0179589_102696932	3300024288	Vadose Zone Soil	MKTLIIFLLGLIIGGVAMLFLPDTRRDEFNAEIRTQTGALQAHLQQFGDQLKGAKQPKLQNNSPTPAPSVTGRS
Ga0207699_102493203	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MKTLVAFLLGLILGGLGMLFLPDPRRDELNAEVRKQTDALQTQVHQFGDQLKTLSLPKPEEKASPSPSASAT
Ga0209240_100020218	3300026304	Grasslands Soil	MRTLVAFLLGLIIGGVAILFLPDPRRDELNAEIRAQTDALQAQLHQFGDQLKTLSLPKPEKSPSPSATATP
Ga0209240_10251392	3300026304	Grasslands Soil	MRTLVAFLLGLIIGGVAILFLPDPRRDELNAEIRAQTDALQTQLHQFGDQLKTLSLPKPEKSPSPSATATP
Ga0209647_11504672	3300026319	Grasslands Soil	LLFAAGNLEQGIMRTLVAFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTEALQTQLRQFGDQFKGMKLPQPENSSPTPSPSATPK
Ga0209419_10615462	3300027537	Forest Soil	MKTLIIFLLGLIIGGVAMLFLPDSRRDELNAEIRTQTGALQAQLQRFGDQSKGSNQPKTENNSPTPAPSVVGRS
Ga0209221_10041094	3300027609	Forest Soil	MRTLVAFLLGLILGGVAVLFLPDPRRNELNAEIRTQTDALQTELHKFGDQLKTLSLPKPENASPSPSASASGNP
Ga0209221_10107516	3300027609	Forest Soil	MKTLIIFLLGLIIGAVAMLFLPDPRSDELNAEIRTQTGALQAQLHRLGNQFKGAEQPKTENSSPSPAPSVTGRS
Ga0209420_10706872	3300027648	Forest Soil	GLVKAGIQLLHLETQVPMKTLIIFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTVALQAQLQRFGDQVKGMNQPKTENSSPTPAPSVTGRS
Ga0209380_104088091	3300027889	Soil	MKTLIIFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTGALQAQLQRFGDQSKGLNQPKTENNSPTPAPSVTGRS
Ga0209006_104189991	3300027908	Forest Soil	MKTLIIFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTGALQAQLQRLGGQFNGMNQPKTENSSPT
Ga0209006_105918421	3300027908	Forest Soil	MKTLIIFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTGALQAQLQRFGDQSKGLNQPKTENNSPTPAPSVVGRS
Ga0209006_111558911	3300027908	Forest Soil	MKTLIIFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTVALQAQLQRFADQLKGMNPPKTENSSPTPAPSVTSRS
Ga0209526_104491821	3300028047	Forest Soil	MKTLIIFLLGLIIGGVAMLFLPDTRRDEFNAEIRTQTGALQAHLQQFGDQFKGAKQPKTENNSPTPAPSVTGRS
Ga0308309_100175197	3300028906	Soil	LLFAALNLEQSIMRTLVAFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTEALQTQLRQFGEQFKDLKLPHPENSSPTPSPRATPQ
Ga0222749_100368653	3300029636	Soil	MRTLVAFLLGLIIGGVAILFLPDPRRDELNAEIRAQTDALQAQLHQFGDQLKTLSLPKLEKSPSLSATATP
Ga0222749_104206431	3300029636	Soil	KVSMKTLIIFLLGLIIGGVAMLFLPDTRRDEFKAEIRTQTGALQAHLQQFGDQFKGAKQPKTENNSPTPAPSVTGRS
Ga0170834_1016620641	3300031057	Forest Soil	MRTLVAFLLGLIIGGVAILFLPDPRRDELNAEVRAQTDALQAQLHQFGDQLKTLSLPKLEKSPSPSATATP
Ga0307476_100920272	3300031715	Hardwood Forest Soil	MRALVTFLLGLIIGGLAILFLPDPRRDELNAEVRKQTDALQTEIHQFGDQLKTLSLPKPDKSSPSPSPTGNP
Ga0307476_112789912	3300031715	Hardwood Forest Soil	MRTLVAFLLGLIIGGVAVLFLPDPRRDELNAEVRKQTDALQTQLHQFGDQLKTLSLPKPEKSSASPSATGTPSK
Ga0307474_100354474	3300031718	Hardwood Forest Soil	MKTLIIFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTVALQAQLQRFGDQVKGMNQPKTENSSPTPAPSVTGRS
Ga0307474_101804452	3300031718	Hardwood Forest Soil	MRTLVAFLLGVILGGLAMLFLPDPRRDELNAEVRKQTDALQTQVHQFGDQLKTLSLPKPDEKASPSPSASAER
Ga0307477_100164636	3300031753	Hardwood Forest Soil	MRTLVAFLLGLIIGGIAILFLPDPRRDELNAEVRAQTDALQAQLHQFGDQLKTLTLPKPEKSSPSPSATSTP
Ga0307477_104824792	3300031753	Hardwood Forest Soil	IIGGVAMLFLPDTRRDEFNAEIRTQTGALQAHLQQFGDQFKGAKQPKTDSNSPTPAPSVTGRS
Ga0307475_101289672	3300031754	Hardwood Forest Soil	VTFLLGLIIGGLAILFLPDPRRDELNAEVRKQTDALQTEIHQFGDQLKTLSLPKPEKPSASPSATGAQ
Ga0307475_104884772	3300031754	Hardwood Forest Soil	MKTLIIFLLGLIIGGVATLFLPNTRRDEFNAEIRTQTGALQAHLQQFGDQFKGAKQPKTETNSPIPAPSVAGRS
Ga0307475_105427312	3300031754	Hardwood Forest Soil	MRTLVAFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTEALQTQLRQFGEQFKDLKLPHPENSSPTPSPRATPQ
Ga0307479_107424792	3300031962	Hardwood Forest Soil	VTFLLGLIIGGLAILFLPDPRRDELNAEVRKQTDALQTEIHQFGDQLKTLSLPKPDKPSASPSATGAQ
Ga0307479_114333482	3300031962	Hardwood Forest Soil	MRTLVAFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTEALQTQLRQLGEQFKDVKLPHPENSSPTPSPRATPQ
Ga0307479_120101372	3300031962	Hardwood Forest Soil	MKTLIIFLLGLIIGGVAMLFLPDTRRDEFNSEIRTQTGALQAHLQQFGDQIKGAKQPKTENSSPTPAPSVTGRS
Ga0306920_1022743881	3300032261	Soil	MRTLVAFLLGLIIGGVAILFLPDPRRDELNAEIRTQTDGLQKQLHQFGDQLKTLSLPKLEKDSPSPSPSATETR
Ga0335072_102373102	3300032898	Soil	MRSLVAFLLGLILGGLGMLFLPDPRRDELNAEVRKQTDALQTQVHQFGDQLKTLTLPKPEEKASPSPSTSPTQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095804

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences