Metagenome / Metatranscriptome Family F096006

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096006
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	61 residues
Representative Sequence	MPETPTASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALAEKRRRKE
Number of Associated Samples	66
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	60.00 %
% of genes near scaffold ends (potentially truncated)	20.00 %
% of genes from short scaffolds (< 2000 bps)	93.33 %
Associated GOLD sequencing projects	55
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (60.952 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.762 % of family members)
Environment Ontology (ENVO)	Unclassified (25.714 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.810 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.33% β-sheet: 0.00% Coil/Unstructured: 47.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF00582	Usp	3.81
PF00011	HSP20	2.86
PF00106	adh_short	1.90
PF09335	SNARE_assoc	1.90
PF02622	DUF179	1.90
PF00989	PAS	0.95
PF02635	DrsE	0.95
PF13561	adh_short_C2	0.95
PF04972	BON	0.95
PF02586	SRAP	0.95
PF00211	Guanylate_cyc	0.95
PF01053	Cys_Met_Meta_PP	0.95
PF00480	ROK	0.95
PF13358	DDE_3	0.95
PF13505	OMP_b-brl	0.95
PF07282	OrfB_Zn_ribbon	0.95
PF01068	DNA_ligase_A_M	0.95
PF00216	Bac_DNA_binding	0.95
PF00536	SAM_1	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	2.86
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	1.90
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	1.90
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	1.90
COG1678	Putative transcriptional regulator, AlgH/UPF0301 family	Transcription [K]	1.90
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.90
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.95
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.95
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.95
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.95
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.95
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.95
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.95
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.95
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.95
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.95
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.95
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.95
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.95
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.95
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.95
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.95 %
All Organisms	root	All Organisms	39.05 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.95 %
cellular organisms	root	All Organisms → cellular organisms	39.05 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.95 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.05 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	29.52 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.71 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.95 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.86 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1.90 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.95 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.81 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	2.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.86 %
Alphaproteobacteria bacterium BRH_c36	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium BRH_c36	0.95 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.95 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.95 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.95 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.95 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.86 %
Methylocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa	1.90 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.95 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	0.95 %
unclassified Beijerinckiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae	0.95 %
Alphaproteobacteria bacterium BRH_c36	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium BRH_c36	0.95 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.95 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.86 %
unclassified Methylocapsa	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa	1.90 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.95 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.95 %
unclassified Novosphingobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium	0.95 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.95 %
Alphaproteobacteria bacterium BRH_c36	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium BRH_c36	0.95 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.95 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.86 %
Methylocapsa sp. S129	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa → Methylocapsa sp. S129	1.90 %
Novosphingobium sp. HR1a	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. HR1a	0.95 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.95 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.95 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.95 %
Alphaproteobacteria bacterium BRH_c36	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium BRH_c36	0.95 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.95 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_101362030	Not Available	602	Open in IMG/M
3300005332\|Ga0066388_100617351	Not Available	1704	Open in IMG/M
3300005332\|Ga0066388_103300287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium BRH_c36	824	Open in IMG/M
3300005764\|Ga0066903_100405533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2246	Open in IMG/M
3300005764\|Ga0066903_101771478	All Organisms → cellular organisms → Bacteria → Proteobacteria	1179	Open in IMG/M
3300005764\|Ga0066903_103640831	Not Available	829	Open in IMG/M
3300005764\|Ga0066903_105944823	Not Available	640	Open in IMG/M
3300006057\|Ga0075026_100381682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	788	Open in IMG/M
3300006059\|Ga0075017_100031948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3472	Open in IMG/M
3300006059\|Ga0075017_100147450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1673	Open in IMG/M
3300006059\|Ga0075017_100165795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1582	Open in IMG/M
3300006059\|Ga0075017_100206158	Not Available	1424	Open in IMG/M
3300006059\|Ga0075017_101009892	Not Available	648	Open in IMG/M
3300006086\|Ga0075019_10271237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1016	Open in IMG/M
3300006086\|Ga0075019_10887048	Not Available	572	Open in IMG/M
3300006086\|Ga0075019_10970053	Not Available	548	Open in IMG/M
3300006102\|Ga0075015_100018405	Not Available	3057	Open in IMG/M
3300006102\|Ga0075015_100970216	Not Available	519	Open in IMG/M
3300006162\|Ga0075030_101653471	Not Available	501	Open in IMG/M
3300006172\|Ga0075018_10135999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1123	Open in IMG/M
3300006173\|Ga0070716_101829031	Not Available	503	Open in IMG/M
3300006174\|Ga0075014_100004041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4525	Open in IMG/M
3300006174\|Ga0075014_100063181	Not Available	1629	Open in IMG/M
3300006174\|Ga0075014_100108452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1304	Open in IMG/M
3300006174\|Ga0075014_100399978	Not Available	748	Open in IMG/M
3300006354\|Ga0075021_10434197	Not Available	826	Open in IMG/M
3300006953\|Ga0074063_13896922	Not Available	562	Open in IMG/M
3300009522\|Ga0116218_1001980	All Organisms → cellular organisms → Bacteria	12009	Open in IMG/M
3300009522\|Ga0116218_1147139	All Organisms → cellular organisms → Bacteria	1070	Open in IMG/M
3300009523\|Ga0116221_1133159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1088	Open in IMG/M
3300009525\|Ga0116220_10326936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	678	Open in IMG/M
3300010358\|Ga0126370_11926356	Not Available	576	Open in IMG/M
3300010360\|Ga0126372_13068800	Not Available	518	Open in IMG/M
3300010371\|Ga0134125_12051164	Not Available	622	Open in IMG/M
3300010376\|Ga0126381_100518285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1684	Open in IMG/M
3300010376\|Ga0126381_101449201	Not Available	992	Open in IMG/M
3300010379\|Ga0136449_101559540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1006	Open in IMG/M
3300010379\|Ga0136449_102989094	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300012989\|Ga0164305_10117781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1742	Open in IMG/M
3300015371\|Ga0132258_11886050	Not Available	1505	Open in IMG/M
3300015372\|Ga0132256_103186914	All Organisms → cellular organisms → Bacteria → Proteobacteria	552	Open in IMG/M
3300015374\|Ga0132255_100790885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1414	Open in IMG/M
3300016319\|Ga0182033_11027859	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300016319\|Ga0182033_11726642	Not Available	567	Open in IMG/M
3300016319\|Ga0182033_12071111	Not Available	519	Open in IMG/M
3300016319\|Ga0182033_12171783	Not Available	507	Open in IMG/M
3300016341\|Ga0182035_11672757	Not Available	575	Open in IMG/M
3300016341\|Ga0182035_12137713	Not Available	508	Open in IMG/M
3300016357\|Ga0182032_12019984	Not Available	506	Open in IMG/M
3300016387\|Ga0182040_11084993	Not Available	670	Open in IMG/M
3300016404\|Ga0182037_11044297	Not Available	713	Open in IMG/M
3300016404\|Ga0182037_11882157	Not Available	535	Open in IMG/M
3300016422\|Ga0182039_10096114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2173	Open in IMG/M
3300016422\|Ga0182039_11222120	Not Available	679	Open in IMG/M
3300016445\|Ga0182038_10863315	Not Available	796	Open in IMG/M
3300016445\|Ga0182038_11282964	Not Available	654	Open in IMG/M
3300017928\|Ga0187806_1302957	Not Available	564	Open in IMG/M
3300017942\|Ga0187808_10514324	Not Available	555	Open in IMG/M
3300017955\|Ga0187817_10498795	Not Available	777	Open in IMG/M
3300017955\|Ga0187817_10784629	Not Available	608	Open in IMG/M
3300017955\|Ga0187817_10816798	Not Available	595	Open in IMG/M
3300017955\|Ga0187817_11129708	Not Available	503	Open in IMG/M
3300017970\|Ga0187783_10160543	Not Available	1656	Open in IMG/M
3300017970\|Ga0187783_10248095	Not Available	1302	Open in IMG/M
3300017970\|Ga0187783_11002529	Not Available	602	Open in IMG/M
3300017972\|Ga0187781_10000075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	63915	Open in IMG/M
3300017972\|Ga0187781_10799879	Not Available	684	Open in IMG/M
3300017995\|Ga0187816_10092821	Not Available	1292	Open in IMG/M
3300017995\|Ga0187816_10106340	Not Available	1206	Open in IMG/M
3300018006\|Ga0187804_10184140	All Organisms → cellular organisms → Bacteria → Proteobacteria	888	Open in IMG/M
3300018085\|Ga0187772_10403145	All Organisms → cellular organisms → Bacteria → Proteobacteria	952	Open in IMG/M
3300018088\|Ga0187771_10255501	All Organisms → cellular organisms → Bacteria	1462	Open in IMG/M
3300018090\|Ga0187770_10249311	All Organisms → cellular organisms → Bacteria	1375	Open in IMG/M
3300020583\|Ga0210401_10730269	Not Available	851	Open in IMG/M
3300020583\|Ga0210401_10894299	Not Available	747	Open in IMG/M
3300020583\|Ga0210401_11304334	Not Available	584	Open in IMG/M
3300021178\|Ga0210408_11186081	Not Available	584	Open in IMG/M
3300021475\|Ga0210392_10353965	Not Available	1063	Open in IMG/M
3300021560\|Ga0126371_10994004	Not Available	981	Open in IMG/M
3300021560\|Ga0126371_13407643	Not Available	537	Open in IMG/M
3300027604\|Ga0208324_1080957	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	920	Open in IMG/M
3300030707\|Ga0310038_10087290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. HR1a	1659	Open in IMG/M
3300031231\|Ga0170824_109192238	All Organisms → cellular organisms → Bacteria	1310	Open in IMG/M
3300031474\|Ga0170818_102048728	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300031708\|Ga0310686_110176834	Not Available	1364	Open in IMG/M
3300031715\|Ga0307476_10983239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa → Methylocapsa sp. S129	622	Open in IMG/M
3300031718\|Ga0307474_11073641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa → Methylocapsa sp. S129	637	Open in IMG/M
3300031719\|Ga0306917_11113706	Not Available	615	Open in IMG/M
3300031719\|Ga0306917_11596507	Not Available	501	Open in IMG/M
3300031744\|Ga0306918_11496726	Not Available	516	Open in IMG/M
3300031890\|Ga0306925_10907328	Not Available	906	Open in IMG/M
3300031910\|Ga0306923_11644591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	666	Open in IMG/M
3300031912\|Ga0306921_12186378	Not Available	584	Open in IMG/M
3300031947\|Ga0310909_10964439	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	698	Open in IMG/M
3300031954\|Ga0306926_12404608	Not Available	580	Open in IMG/M
3300032001\|Ga0306922_11054703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	836	Open in IMG/M
3300032001\|Ga0306922_11767909	Not Available	610	Open in IMG/M
3300032076\|Ga0306924_11600340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	687	Open in IMG/M
3300032160\|Ga0311301_11024726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1087	Open in IMG/M
3300032160\|Ga0311301_11803218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	728	Open in IMG/M
3300032160\|Ga0311301_12849997	Not Available	526	Open in IMG/M
3300032180\|Ga0307471_103920842	Not Available	526	Open in IMG/M
3300032261\|Ga0306920_101212523	Not Available	1090	Open in IMG/M
3300032261\|Ga0306920_101334271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1031	Open in IMG/M
3300032892\|Ga0335081_10800004	Not Available	1127	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.14%
Host-Associated	Host-Associated	2.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.43%
Aquatic	Environmental → Aquatic	25.71%
Plants	Host-Associated → Plants	2.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.43%
Sediment	Environmental → Aquatic → Sediment	17.14%
Freshwater	Environmental → Aquatic → Freshwater	8.57%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.24%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	17.14%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.57%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.57%
Loam	Environmental → Terrestrial → Soil → Loam	7.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.95%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	35.24%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	17.14%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	8.57%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.57%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.76%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	17.14%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	10.48%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	8.57%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	7.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.71%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.95%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1013620301	3300002245	Forest Soil	MPETPTTPDLEKAHVILSEFGLLIGPAGELSDLIARAIAAGIALGRKEALAGMRRSGKSKSSG*
Ga0066388_1006173512	3300005332	Tropical Forest Soil	MRETPTASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALKTVRSSGGRKLSK*
Ga0066388_1033002872	3300005332	Tropical Forest Soil	MPETPTASDLEKAHLILSEFGLLIGPAGEMSDIIARAVAAGIALGRKEGLEERRRKK*
Ga0066903_1004055333	3300005764	Tropical Forest Soil	MRETPTASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALKTARSSGGRKLSK*
Ga0066903_1017714782	3300005764	Tropical Forest Soil	MPETPTASDLEKAHLILSEFGLLIGPAGEMSDIIARAVAASIALGRKEALAEKRRREE*
Ga0066903_1036408313	3300005764	Tropical Forest Soil	MPETSTASDLEKAHLILSEFGLLIGPAGEISNVIPRAVAAGIALGRKEALAKARRRSDEEKPPRLGRAR*
Ga0066903_1059448231	3300005764	Tropical Forest Soil	MPETPTSSDLEKAHLILSEFGLLIGPAGEISDVIARAVAARIALGRKEALAEERRRKE*
Ga0075026_1003816822	3300006057	Watersheds	MPEQPIADDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALAARRSGGGKPSK*
Ga0075017_1000319482	3300006059	Watersheds	MTEQPTTSDLEKAHLILSEFGLLIGPAGAMSDVIARAVAAGIALGRKEALIEKRRKQE*
Ga0075017_1001474502	3300006059	Watersheds	MPETPTASDLEKAHLILSEFGLLIGPAGEVSDIIARAVAAGIALGRKEALAEKRRRKE*
Ga0075017_1001657951	3300006059	Watersheds	EKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALATARRSGGGKPSK*
Ga0075017_1002061582	3300006059	Watersheds	MPEQPIADDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALATARRSGGGKPSK*
Ga0075017_1010098921	3300006059	Watersheds	MIDEPTKSDLAKAYQILSEFGLLIGPAGKSSDAIARAIAAGIALGRKEALTTNKQQKKG*
Ga0075019_102712371	3300006086	Watersheds	VSETQTQSDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEGLAEKRGRKK*
Ga0075019_108870482	3300006086	Watersheds	MAETPAASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALAARRSGGGKPSK*
Ga0075019_109700532	3300006086	Watersheds	MAACPRNPRSDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEGLADKRRRKE
Ga0075015_1000184056	3300006102	Watersheds	MIDEPSASDLQKAYQILSEFGLLIGPAGKNSDAIARAIAAGIALGRKEASPDKPKKKR*
Ga0075015_1009702161	3300006102	Watersheds	MPEQPTASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEGLAERRRRQE*
Ga0075030_1016534711	3300006162	Watersheds	RHNGRMPETPTTSDLEKAYVILSDFGLLIGPAGEMSDVIARAIAAGIALGRKEALAARRSGGGKPSK*
Ga0075018_101359992	3300006172	Watersheds	MPETPTASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALAARRSGGGKPSK*
Ga0070716_1018290311	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MAETPTASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALATARRSGGGKPSK*
Ga0075014_1000040418	3300006174	Watersheds	MPETPTASDLEKAHLIPSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALAARRSGGGKPSK*
Ga0075014_1000631811	3300006174	Watersheds	PAASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEVLAKARRSDENKPHRPKLK*
Ga0075014_1001084523	3300006174	Watersheds	PAASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALAARRSGGGKPSK*
Ga0075014_1003999781	3300006174	Watersheds	MAACPRNPRSDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGITLGRKEALAEKRRRKE
Ga0075021_104341971	3300006354	Watersheds	PTKSDLAKAYQILSEFGLLIGPAGKSSDAIARAIAAGIALGRKEASPDKPKKKR*
Ga0074063_138969221	3300006953	Soil	RHNSYMPEQPTADDLEKAHLILSEFGLLVGPAGAMSDVIARAVAAGIAVGRKEALAKTRRSKSSESSAS*
Ga0116218_100198016	3300009522	Peatlands Soil	MPETPTTSDLEKAHVILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALAGMRRNDKSKSGG*
Ga0116218_11471392	3300009522	Peatlands Soil	MPEEPTSSDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEGLAEKRRRQG*
Ga0116221_11331591	3300009523	Peatlands Soil	PEEPTSSDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEGLAEKRRRQG*
Ga0116220_103269361	3300009525	Peatlands Soil	MAETPTASDLENAHLILSEFGLLIGPAGEMSDVIARAVAAGIALERKEGLAERRRRQE*
Ga0126370_119263562	3300010358	Tropical Forest Soil	MPETPTASDLEKAHLIISEFGLLIGPAGEMSDVIARAVAAGIALGRKEALSKARGRPVAE
Ga0126372_130688002	3300010360	Tropical Forest Soil	MLEKPTTSDLEKAHLILSEFGLLIGPAGEMSDVIARAVEAGIALGRKEALAEKRRRKE*
Ga0134125_120511641	3300010371	Terrestrial Soil	MPETPTASDLEKAHVILSEFGLLIGPAGEMSDVIARAVAAGIAQGRKEALAGVRRDDGS*
Ga0126381_1005182853	3300010376	Tropical Forest Soil	MPETSTAADLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALAEKRGRKE*
Ga0126381_1014492012	3300010376	Tropical Forest Soil	VNAMRETPTASDLEKAHLILSEFGLLIGPAGEMSDVIARAVATGIALGRKEALKTVRSSGGRKPSKSHP*
Ga0136449_1015595402	3300010379	Peatlands Soil	MPEQPTASDLEKAHLILSEFSLLIGPAGEMSDVIARAVAAGIALERKEGLAERRRRQE*
Ga0136449_1029890941	3300010379	Peatlands Soil	MPEQPTKADLEQAHLILSEFGLLIGPAGAMSDVIARAVAAGIALGRKEAFTAARRGGKSKSSR*
Ga0164305_101177813	3300012989	Soil	AETPTASDLETHLIFIEFGLLIGPAGEMSDVIARAVAAGIALGRKEALATARRSGGGKPSK*
Ga0132258_118860503	3300015371	Arabidopsis Rhizosphere	MPEQPTADDLEKAHLIRSEFGLLIGPAGAMSDVIARAVAAGIALGRKEALGKTRRAQTKTGD*
Ga0132256_1031869141	3300015372	Arabidopsis Rhizosphere	MPEISTASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEGLAARRGKRE*
Ga0132255_1007908853	3300015374	Arabidopsis Rhizosphere	MPEIPTASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALVRKEALAAKRGKRE*
Ga0182033_110278591	3300016319	Soil	VPETPTQSDLKKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALAEKRRKRE
Ga0182033_117266421	3300016319	Soil	MPETPTASDLEKAHLIISEFGLLIGPAGEMSDVIARAVAAGIALGRKEALSKARGRPRG
Ga0182033_120711111	3300016319	Soil	MTEQPTAPDLQKAHLILDLLIGPAGAMSDVIARAVAAGIALGRKEALVEKRRK
Ga0182033_121717831	3300016319	Soil	MAEQPTADDLEKAHLILAEFGLLIGPAGAMSDVIARAVAAGIALGRKEALVSVRKGDEQKPHD
Ga0182035_116727572	3300016341	Soil	LASLWRSSHNGRMPETPTASDLEKAHLIISEFGLLIGPAGEMSDVIARAVAAGIALGRKEALSKARGRPRG
Ga0182035_121377132	3300016341	Soil	MPETPTASDVEKTHLIVSEFGLLIGPAGEMSDLIARAVAAGIALGRKEALAKKRERIKT
Ga0182032_120199841	3300016357	Soil	MPETPTASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALAEKRRTQK
Ga0182040_110849932	3300016387	Soil	MPETPTASDLEKAHLILSEFGLLIGPAGEMSDIIARAVAAGIALGRKEALGEKRRKSPTVGLPR
Ga0182037_110442972	3300016404	Soil	MPETPAASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALAEKRPKKE
Ga0182037_118821571	3300016404	Soil	MIEKPTESDLEKAHQILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALAVARKDRSTGQAQRT
Ga0182039_100961144	3300016422	Soil	MPETPTASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALAEKRRRPPPVGLPR
Ga0182039_112221201	3300016422	Soil	VLETPTQSDPEKAHLILSEFDLLIGPAGEMSDLIARAVAAGIALGRKEGLAEKRGRNK
Ga0182038_108633152	3300016445	Soil	MLETPTASDLEKAHLIISEFGLLIGPAGEMSDVIARAVAAGIALGRKEALSKARRRQD
Ga0182038_112829642	3300016445	Soil	MPETPTASDLEKAHLILSEFGLLIGPAGEMSDVIACAVAAGIALGRKEALAEKHRKSPTVGLPR
Ga0187806_13029572	3300017928	Freshwater Sediment	MAETPAASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALAARRSGGGKPSK
Ga0187808_105143242	3300017942	Freshwater Sediment	MPEQPIADDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRQEALATARRSGGGKPSK
Ga0187817_104987953	3300017955	Freshwater Sediment	LRRRCRLFCPAVPCHNVGMPENPTASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALRRKEALATARRSGGGKPSK
Ga0187817_107846292	3300017955	Freshwater Sediment	MPEQPIAHDLEKAHLILSEFDLLIGPAGEMSDVIARAVAASIALGRKEAFATARRSGGGKPSK
Ga0187817_108167981	3300017955	Freshwater Sediment	MPETPTASDLEKAHLILSEFALLIGPAGEMSDVVARAVAAGIALGRKEALAARRSGGGKPSK
Ga0187817_111297082	3300017955	Freshwater Sediment	MPETPTTPDLEKAHVILSEFGLLIGPAGELSDLIARAIAAGIALGRKEALAGMRRSGKSKSGG
Ga0187783_101605432	3300017970	Tropical Peatland	VPETPTRSDLEKAHLILSEFGLLFGPAGEMSDVIARAVAAGIALGRKEGLAEKRATKK
Ga0187783_102480953	3300017970	Tropical Peatland	MPENPTASDLEKAHSILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALTGRRGGGGKPSK
Ga0187783_110025291	3300017970	Tropical Peatland	MPENPTASDLEKAHLILSEFGLLIGPAGEMSDVIASAVAAGIALGRKEALVTGRRSGGGKSSK
Ga0187781_1000007511	3300017972	Tropical Peatland	MPETPTASDLEKAHSILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALAKTRRNEGRKSLK
Ga0187781_107998791	3300017972	Tropical Peatland	MAETPIASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALAEKRPKQK
Ga0187816_100928213	3300017995	Freshwater Sediment	MIDEPSASDLQKAYQILSEFGLLIGPAGKNSDAIARAIAAGIALGRKEASPDKPKKKR
Ga0187816_101063402	3300017995	Freshwater Sediment	MTETPAASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALATARRSGGGKPSK
Ga0187804_101841402	3300018006	Freshwater Sediment	ETPAASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEVLAKARRSDENKPHRPKLK
Ga0187772_104031451	3300018085	Tropical Peatland	MPETPTQSDLEKAYLILSEFGLLIGPAGEMSDIIACTVAAGIVLGPKEALAEKRRKPPPVGLPR
Ga0187771_102555011	3300018088	Tropical Peatland	MPDKETHTESDLEKARVILSEYGLTIGPAGQMSEVVARAVADGIALGRKEAQASKGPAPK
Ga0187770_102493112	3300018090	Tropical Peatland	MPDKETHTESDLEKARVILSEYGLTIGPAGQMSEVIARAVADGIALGRKEAQASKGPAPK
Ga0210401_107302692	3300020583	Soil	MLEKPTADDLEKAHLILSEFGLLVGPAGAMSDVIARAVAAGIAVGRKEALAKTRRSKSSESSAS
Ga0210401_108942992	3300020583	Soil	MAETPTASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAASIALGRKEALATARRSGGGKPSK
Ga0210401_113043343	3300020583	Soil	MVDEPTESDLERARLILGEFGLWIGPADGKSDIITRAIAAGIALGRKEALAGKRQKLG
Ga0210408_111860811	3300021178	Soil	GKYLVSACAPRHNSYMPEQPTADDLEKAHLILSEFGLLVGPAGAMSDVIARAVAAGIAVGRKEALAKTRRSKSSESSAS
Ga0210392_103539652	3300021475	Soil	MAETPTASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALATARRSGGGKPSK
Ga0126371_109940041	3300021560	Tropical Forest Soil	MRETPTASDLEKAHLILSEFGLLIGPAGEMSDVIARAVATGIALGRQEALKTVRSSGGRKPSK
Ga0126371_134076431	3300021560	Tropical Forest Soil	MLETPTTSDLEKAHLILSEFGLLIGPAGELSDVIARAVAAGIALGRKEALAEK
Ga0208324_10809571	3300027604	Peatlands Soil	MPETPTTSDLEKAHVILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALAGMRRNDKSKSGG
Ga0310038_100872903	3300030707	Peatlands Soil	MPEEPTSSDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEGLAEKRRRQG
Ga0170824_1091922382	3300031231	Forest Soil	MIDEPTKSDLAKAYQILSEFGLLIGPAGKSSDAIARAIAAGIALGRKEALTTNKQQKKG
Ga0170818_1020487281	3300031474	Forest Soil	TASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALAARRSGGGKPSK
Ga0310686_1101768341	3300031708	Soil	MPETPTASDLEKAHLIISEFGLLIGPAGEMSDVIARAVAAGIALGRKEALAARHSGGGKPSK
Ga0307476_109832392	3300031715	Hardwood Forest Soil	MPEQPTASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIAFGRKEGLAARRRRQE
Ga0307474_110736411	3300031718	Hardwood Forest Soil	EQPTASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIAFGRKEGLAARRRRQE
Ga0306917_111137062	3300031719	Soil	MPETPTASDLEKAHLILSEFGLLIGPAGEMSDIIARAVAAGIALGRKEALAVARKDRSTGQARRT
Ga0306917_115965071	3300031719	Soil	MPETPTASDLEKAHLIISEFGLLIGPAGEMSDVIARAVAAGIALGRKEALSKARRRQD
Ga0306918_114967262	3300031744	Soil	PLASLWRSRHNGRMLETPTASDLEKAHLIISEFGLLIGPAGEMSDVIARAVAAGIALGRKEALSKARRRRD
Ga0306925_109073282	3300031890	Soil	LAVKVNTMRETPTASDLEKAHLILSEFGLLIGPAGEMSDVIARAVATGIALGRKEALKTVRSSGGRKLSK
Ga0306923_116445912	3300031910	Soil	MPETPTASDLEKAHLIISEFGLLIGPAGEMSDVIARAVAAGFALGRKEALSKARRRGYEEKPSRH
Ga0306921_121863782	3300031912	Soil	MPETPTASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALAEKRRRKE
Ga0310909_109644391	3300031947	Soil	MPETPTASDLEKAHLIISEFGLLIGPAGEMSDVIARAVAAGIALGRKEALAKARRRSDEEKPPRLGRAR
Ga0306926_124046082	3300031954	Soil	MPTQSDLERARLILSEFGLLIGPAGKMSDVIARAVAPGIALGRKEALAEKRRKRE
Ga0306922_110547031	3300032001	Soil	TASDLEKAHLIISEFGLLIGPAGEMSDVIARAVAAGFALGRKEALSKPRRRGYEEKPSRH
Ga0306922_117679091	3300032001	Soil	LAVKVNAMRETPTASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALKTARSSGGRKLSK
Ga0306924_116003402	3300032076	Soil	MPEAPTASDLEKAHLILSELGLLIGPAGEMSDVIARAVAAGIALGRKEALAEKRRK
Ga0311301_110247262	3300032160	Peatlands Soil	VSETQTQSDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEGLAEKRGRKK
Ga0311301_118032182	3300032160	Peatlands Soil	MPGQPTASDVEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALERKEGLAERRRRQE
Ga0311301_128499971	3300032160	Peatlands Soil	MIMRETPTASDLEKAHLIPSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALATARPSGGGKSSK
Ga0307471_1039208421	3300032180	Hardwood Forest Soil	MPETPTASDLEKAHLILSEFGLLIGPAGEMSDVIARAVAAGIALGRKEALAARRSGGGKPSK
Ga0306920_1012125232	3300032261	Soil	MPETPTASDVEKTHLIVSEFGLLIGPAGEMSDLIARAVAAGIALGRKEALAKKREQIKT
Ga0306920_1013342713	3300032261	Soil	VPETPTQSDLEKAHLVLSEFGLLIGPAGEMSDVIARAVAAGIALGRKEASAEKRRKRE
Ga0335081_108000042	3300032892	Soil	MSEEPTAADLEKAHLILGEFGLLIGPAGAMSDVIARAVAAGIALGRKEGLADAHRGDQYESKA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096006

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences