Metagenome / Metatranscriptome Family F096112

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096112
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	56 residues
Representative Sequence	LTDVTSQTLRQWRESQGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWERG
Number of Associated Samples	83
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	74.04 %
% of genes near scaffold ends (potentially truncated)	97.14 %
% of genes from short scaffolds (< 2000 bps)	95.24 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (65.714 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (37.143 % of family members)
Environment Ontology (ENVO)	Unclassified (47.619 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.762 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 77.78% β-sheet: 0.00% Coil/Unstructured: 22.22%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF00441	Acyl-CoA_dh_1	3.81
PF06071	YchF-GTPase_C	2.86
PF00459	Inositol_P	2.86
PF02566	OsmC	1.90
PF01022	HTH_5	1.90
PF02738	MoCoBD_1	1.90
PF00072	Response_reg	0.95
PF13808	DDE_Tnp_1_assoc	0.95
PF00561	Abhydrolase_1	0.95
PF02371	Transposase_20	0.95
PF00171	Aldedh	0.95
PF00012	HSP70	0.95
PF12728	HTH_17	0.95
PF03435	Sacchrp_dh_NADP	0.95
PF12146	Hydrolase_4	0.95
PF13738	Pyr_redox_3	0.95
PF01814	Hemerythrin	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	3.81
COG0012	Ribosome-binding ATPase YchF, GTP1/OBG family	Translation, ribosomal structure and biogenesis [J]	2.86
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	1.90
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	1.90
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.95
COG0443	Molecular chaperone DnaK (HSP70)	Posttranslational modification, protein turnover, chaperones [O]	0.95
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.95
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.95
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
All Organisms	root	All Organisms	34.29 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
cellular organisms	root	All Organisms → cellular organisms	34.29 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	34.29 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	30.48 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	29.52 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	19.05 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	3.81 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.86 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.90 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.95 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.95 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.95 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.95 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	3.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.86 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.90 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	0.95 %
Brevundimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas	0.95 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.95 %
Cellulomonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae	0.95 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	3.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.86 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.90 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.95 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	0.95 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	0.95 %
Brevundimonas terrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas → Brevundimonas terrae	0.95 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	3.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.86 %
Streptomyces himalayensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces himalayensis	1.90 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.95 %
Nocardioides guangzhouensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides guangzhouensis	0.95 %
unclassified Cellulomonas	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas	0.95 %
Brevundimonas terrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas → Brevundimonas terrae	0.95 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	3.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.86 %
Streptomyces himalayensis subsp. aureolus	subspecies	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces himalayensis → Streptomyces himalayensis subsp. aureolus	1.90 %
Cellulomonas sp. Leaf395	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas → Cellulomonas sp. Leaf395	0.95 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.95 %
Nocardioides guangzhouensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides guangzhouensis	0.95 %
Brevundimonas terrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas → Brevundimonas terrae	0.95 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_117762099	Not Available	554	Open in IMG/M
3300005434\|Ga0070709_10483888	Not Available	938	Open in IMG/M
3300005434\|Ga0070709_11462884	Not Available	554	Open in IMG/M
3300005444\|Ga0070694_100841359	Not Available	754	Open in IMG/M
3300005540\|Ga0066697_10626821	Not Available	594	Open in IMG/M
3300005764\|Ga0066903_106963832	Not Available	587	Open in IMG/M
3300006028\|Ga0070717_10965641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	776	Open in IMG/M
3300006046\|Ga0066652_100867398	Not Available	862	Open in IMG/M
3300006163\|Ga0070715_10462168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	719	Open in IMG/M
3300006580\|Ga0074049_13008351	Not Available	811	Open in IMG/M
3300006605\|Ga0074057_12231768	Not Available	728	Open in IMG/M
3300006804\|Ga0079221_11781907	Not Available	504	Open in IMG/M
3300006854\|Ga0075425_100302201	Not Available	1842	Open in IMG/M
3300006854\|Ga0075425_102847129	Not Available	532	Open in IMG/M
3300006904\|Ga0075424_102753699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	513	Open in IMG/M
3300006954\|Ga0079219_10140030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1271	Open in IMG/M
3300006954\|Ga0079219_11447885	Not Available	618	Open in IMG/M
3300007076\|Ga0075435_101070215	Not Available	705	Open in IMG/M
3300007076\|Ga0075435_101228922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	656	Open in IMG/M
3300009792\|Ga0126374_11791872	Not Available	513	Open in IMG/M
3300010048\|Ga0126373_12839191	Not Available	541	Open in IMG/M
3300010358\|Ga0126370_11140407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	721	Open in IMG/M
3300010359\|Ga0126376_13094035	Not Available	514	Open in IMG/M
3300010360\|Ga0126372_11072101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	822	Open in IMG/M
3300010360\|Ga0126372_11791603	Not Available	657	Open in IMG/M
3300010361\|Ga0126378_12449537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	596	Open in IMG/M
3300010361\|Ga0126378_12490768	Not Available	591	Open in IMG/M
3300010366\|Ga0126379_12714428	Not Available	592	Open in IMG/M
3300010376\|Ga0126381_100500114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1714	Open in IMG/M
3300010376\|Ga0126381_102896946	Not Available	683	Open in IMG/M
3300010376\|Ga0126381_103586743	Not Available	609	Open in IMG/M
3300010376\|Ga0126381_104487681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas → Brevundimonas terrae	539	Open in IMG/M
3300010396\|Ga0134126_11380476	Not Available	779	Open in IMG/M
3300010400\|Ga0134122_12554156	Not Available	561	Open in IMG/M
3300012211\|Ga0137377_10438655	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1244	Open in IMG/M
3300012505\|Ga0157339_1045630	Not Available	564	Open in IMG/M
3300015245\|Ga0137409_10899712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	721	Open in IMG/M
3300015371\|Ga0132258_10619642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2718	Open in IMG/M
3300015374\|Ga0132255_100888151	Not Available	1332	Open in IMG/M
3300016294\|Ga0182041_10941368	Not Available	778	Open in IMG/M
3300016294\|Ga0182041_11369754	Not Available	649	Open in IMG/M
3300016341\|Ga0182035_10806052	Not Available	824	Open in IMG/M
3300016371\|Ga0182034_10097533	All Organisms → cellular organisms → Bacteria	2096	Open in IMG/M
3300016422\|Ga0182039_11791127	Not Available	563	Open in IMG/M
3300016422\|Ga0182039_11987603	Not Available	535	Open in IMG/M
3300016445\|Ga0182038_11629629	Not Available	581	Open in IMG/M
3300017947\|Ga0187785_10207509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	856	Open in IMG/M
3300017959\|Ga0187779_11375391	Not Available	502	Open in IMG/M
3300017970\|Ga0187783_10843520	Not Available	661	Open in IMG/M
3300018058\|Ga0187766_10726958	Not Available	688	Open in IMG/M
3300018085\|Ga0187772_11279674	Not Available	542	Open in IMG/M
3300018090\|Ga0187770_11277175	Not Available	595	Open in IMG/M
3300020581\|Ga0210399_11080957	Not Available	643	Open in IMG/M
3300021560\|Ga0126371_11598799	Not Available	778	Open in IMG/M
3300021560\|Ga0126371_13095220	Not Available	563	Open in IMG/M
3300025915\|Ga0207693_11236289	Not Available	562	Open in IMG/M
3300025916\|Ga0207663_11282679	Not Available	590	Open in IMG/M
3300025928\|Ga0207700_10557820	Not Available	1017	Open in IMG/M
3300025933\|Ga0207706_11204216	Not Available	629	Open in IMG/M
3300026301\|Ga0209238_1039998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1713	Open in IMG/M
3300027680\|Ga0207826_1071188	Not Available	958	Open in IMG/M
3300031544\|Ga0318534_10540207	Not Available	664	Open in IMG/M
3300031561\|Ga0318528_10245051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	961	Open in IMG/M
3300031564\|Ga0318573_10070327	All Organisms → cellular organisms → Bacteria	1748	Open in IMG/M
3300031564\|Ga0318573_10153582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1208	Open in IMG/M
3300031572\|Ga0318515_10082630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1666	Open in IMG/M
3300031573\|Ga0310915_11162094	Not Available	535	Open in IMG/M
3300031680\|Ga0318574_10204863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1134	Open in IMG/M
3300031724\|Ga0318500_10242016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces himalayensis → Streptomyces himalayensis subsp. aureolus	873	Open in IMG/M
3300031736\|Ga0318501_10395714	Not Available	746	Open in IMG/M
3300031747\|Ga0318502_10226205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1087	Open in IMG/M
3300031747\|Ga0318502_10923188	Not Available	531	Open in IMG/M
3300031748\|Ga0318492_10433275	Not Available	693	Open in IMG/M
3300031764\|Ga0318535_10043053	All Organisms → cellular organisms → Bacteria	1861	Open in IMG/M
3300031765\|Ga0318554_10017825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3664	Open in IMG/M
3300031765\|Ga0318554_10143572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1353	Open in IMG/M
3300031778\|Ga0318498_10085270	Not Available	1427	Open in IMG/M
3300031781\|Ga0318547_10907599	Not Available	550	Open in IMG/M
3300031782\|Ga0318552_10320397	Not Available	789	Open in IMG/M
3300031798\|Ga0318523_10092849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1473	Open in IMG/M
3300031798\|Ga0318523_10397496	Not Available	685	Open in IMG/M
3300031805\|Ga0318497_10229491	Not Available	1028	Open in IMG/M
3300031805\|Ga0318497_10298390	Not Available	897	Open in IMG/M
3300031805\|Ga0318497_10635894	Not Available	598	Open in IMG/M
3300031890\|Ga0306925_10825577	Not Available	960	Open in IMG/M
3300031890\|Ga0306925_11793853	Not Available	588	Open in IMG/M
3300031893\|Ga0318536_10094546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides guangzhouensis	1493	Open in IMG/M
3300031893\|Ga0318536_10181444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1071	Open in IMG/M
3300031894\|Ga0318522_10096621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces himalayensis → Streptomyces himalayensis subsp. aureolus	1091	Open in IMG/M
3300031896\|Ga0318551_10952436	Not Available	502	Open in IMG/M
3300031954\|Ga0306926_11296951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	850	Open in IMG/M
3300032001\|Ga0306922_10991801	Not Available	867	Open in IMG/M
3300032008\|Ga0318562_10664611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas → Cellulomonas sp. Leaf395	600	Open in IMG/M
3300032025\|Ga0318507_10290464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	711	Open in IMG/M
3300032043\|Ga0318556_10725360	Not Available	517	Open in IMG/M
3300032052\|Ga0318506_10197893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	886	Open in IMG/M
3300032054\|Ga0318570_10498925	Not Available	555	Open in IMG/M
3300032054\|Ga0318570_10535407	Not Available	534	Open in IMG/M
3300032063\|Ga0318504_10418367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	639	Open in IMG/M
3300032068\|Ga0318553_10637242	Not Available	558	Open in IMG/M
3300032089\|Ga0318525_10509540	Not Available	616	Open in IMG/M
3300032090\|Ga0318518_10011385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3688	Open in IMG/M
3300032954\|Ga0335083_11550523	Not Available	501	Open in IMG/M
3300033289\|Ga0310914_11162937	Not Available	673	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.43%
Host-Associated	Host-Associated	8.57%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.43%
Plants	Host-Associated → Plants	8.57%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.43%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.24%
Loam	Environmental → Terrestrial → Soil → Loam	9.52%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.90%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.95%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.95%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	48.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.62%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	37.14%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.43%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.62%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.71%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.90%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012505	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.yng.090610	Host-Associated	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1177620991	3300000956	Soil	VADVTSETLRQWRESQGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQW
Ga0070709_104838881	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTGETLRRWREGQGWDVPRMARELRKVARDSGEDVAAHHGLVKMIPQWE
Ga0070709_114628841	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MRELTDVTGETLRWWRESSGWDVPRMARELRKAARDSGEDVAAHRGLVKMIPQWERGGR
Ga0070694_1008413592	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MRALTDVTSEALRRWRQSQGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQWERGNRAPRE
Ga0066697_106268212	3300005540	Soil	MHALTDVTSETLRRWRQSQGWDVPRMGTGEDIAAHHGLVKMIPQWERGARARERYRLLYLKVF
Ga0066903_1069638321	3300005764	Tropical Forest Soil	LADVTGENLRQWRESKGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWERGGRA
Ga0070717_109656411	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VADVTSQELRQWREAKGWDVPRLARELRKAAKDTGEDVAAHHGLVKMIPQWE
Ga0066652_1008673982	3300006046	Soil	MHELTDVTGETLRLWREGKGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQWERGGR
Ga0070715_104621681	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VTDVTSETLRQWREAKGWDVPRMARELRNAARDTGEDVAAHHGLVKMIPQWE
Ga0074049_130083513	3300006580	Soil	VTDVTSETLRQWRESQGWDVPRMARELRRAARDTGEDVAAHHGLVKMIPQWERGNR
Ga0074057_122317681	3300006605	Soil	VTDVTSETLRQWRESQGWDVPRMARELRRAARDTGEDVAAHHGLVKMIPQWE
Ga0079221_117819072	3300006804	Agricultural Soil	MTDMTSQTLRLLRESKGWDVPRMARELRNAARDTGEDVAAHHGLVKMIP
Ga0075425_1003022011	3300006854	Populus Rhizosphere	LTDVTSQTLRQWRESQGWDVPRMARELRKAARDTGEDVAAHHGLVKMI
Ga0075425_1028471292	3300006854	Populus Rhizosphere	LTDVTGKTLRRWREGKGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQWERGG
Ga0075424_1027536991	3300006904	Populus Rhizosphere	LTDVTSETLRRWRQSQGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQWERGNRAPRERYMLLNLKIFEDMLG
Ga0079219_101400303	3300006954	Agricultural Soil	MTGETLRRWREGQGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQWERGGRAPR
Ga0079219_114478852	3300006954	Agricultural Soil	LLPSCARMRALTDVTSETLRRWRESQGWDVPRMARELRKAAKVSGEDVAAHHGLVKMIPQWERGNRAPRE
Ga0075435_1010702152	3300007076	Populus Rhizosphere	VLTDVTGETLRRWREAKGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQWERGG
Ga0075435_1012289222	3300007076	Populus Rhizosphere	LTDMTGETLRRWREGKGWDVPRMARELRRVARDSGEDVAAHHGLVKMIPQWERGGRVPRERYRLLYMK
Ga0126374_117918721	3300009792	Tropical Forest Soil	MRVLADVTGETLRRWREAKGWDVPRMARELRKVARDSGEDVAAHHGLVKMI
Ga0126373_128391912	3300010048	Tropical Forest Soil	MYALTELTGERLRRWREAKGWDVPRMARELRKAAKDTGEDVAAHHGLVKMIPQWER
Ga0126370_111404072	3300010358	Tropical Forest Soil	MRALTDVTGDNLRKWRESKGWDVPRMARELRKVARDSGEDVAAHHGLVKMIPQWER
Ga0126376_130940352	3300010359	Tropical Forest Soil	MRVLADVTGEALRRWRESQGWDVPRMAREIRKAARDCGEDVAAHHGLVKMI
Ga0126372_110721011	3300010360	Tropical Forest Soil	MRVLADVTGETLRRWREAKGWDVPRMARELRKVARDSGEDVAAHHGLVKMIPQW
Ga0126372_117916032	3300010360	Tropical Forest Soil	MRALTDVTSESLRRWRQSQGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQWE
Ga0126378_124495372	3300010361	Tropical Forest Soil	MRVLADVTGETLRRWRESQGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWERG
Ga0126378_124907681	3300010361	Tropical Forest Soil	MHALTGLTGEKLRRWREAKGWDVPRMAREFRKAATDTGEDVAAHHGLVKMIPQWERGNRAPASDTGCCT*
Ga0126379_127144281	3300010366	Tropical Forest Soil	MTDVTSQTLRQWRKAKGWDVPRMARELRKAARDTGENVAAHRGLVKMNPQWER
Ga0126381_1005001141	3300010376	Tropical Forest Soil	VTDVTSQTLRQWRESKGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQWERGNRAPRE
Ga0126381_1028969461	3300010376	Tropical Forest Soil	VTDVSSQTLRLLRESKGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQ
Ga0126381_1035867432	3300010376	Tropical Forest Soil	LTDVTSETLRLWRESQGWDVPRMARELRRAARDSGEDVAAHHGLVKMIPQWERGARAPRE
Ga0126381_1044876811	3300010376	Tropical Forest Soil	MTDVTSQTLRQLRESKGWDVPRMARELRNAARDTGEDVAAHHGLVKMIPQ
Ga0134126_113804761	3300010396	Terrestrial Soil	MPELTDVTGETLRRWREGQGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQWERGGRAPRERYR
Ga0134122_125541561	3300010400	Terrestrial Soil	MRAVTDVTSETLRQWREAKGWDVPRMARELRNAARDTGEDVAAHHGLVKMIPQWERGGRA
Ga0137377_104386551	3300012211	Vadose Zone Soil	VTDVTSETLRQWRESQGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWERGGRAPRERY
Ga0157339_10456301	3300012505	Arabidopsis Rhizosphere	VTDVTSESLRRWREAKGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWERGGRAPR
Ga0137409_108997122	3300015245	Vadose Zone Soil	LNDVTGEALRRWRESQGWDVPRMAREIRKAARDCGEDVAAHHGLVKMIPQWER
Ga0132258_106196421	3300015371	Arabidopsis Rhizosphere	MRVLADVTGENLRQWRESKGWDVPRMARELRKAARDTGEDVAAHHGLVKMIP*
Ga0132255_1008881511	3300015374	Arabidopsis Rhizosphere	VHAVTDVTSETLRRWRESQGWDVPRMARELRNAAKGSGEDVAAHHGLVKMIPQWERGNRAPRERSRLLYLKIFEDML
Ga0182041_109413682	3300016294	Soil	VTDVTSETSRLWRESKGWDVPRMARELRNAARDTGEDVAAHHGLVKMIPQWERGNRAP
Ga0182041_113697541	3300016294	Soil	VSDVTSQTLRQWRESKGWDVPRMARELRKAARDTGEDVAAHHGLVKMI
Ga0182035_108060522	3300016341	Soil	LTDVTSQTLRQWRESQGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWERGNRA
Ga0182034_100975331	3300016371	Soil	LTDVTNETLRLWRESKGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWE
Ga0182039_117911271	3300016422	Soil	VTDVTSQTLRQWRESKGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQWER
Ga0182039_119876031	3300016422	Soil	MTDVTSQTLRLLRESKGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWE
Ga0182038_116296292	3300016445	Soil	LTDVTSETLRRWRQSKGWDVPRMARELRKAARDSGEDIAAHHGLVKMIPQWE
Ga0187785_102075091	3300017947	Tropical Peatland	VRALADVTSETLRRWRQSKGWDVPRMARELRKAARDSGEDVAAHHGLVKM
Ga0187779_113753911	3300017959	Tropical Peatland	MTDVTSQSLRLWRESKGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWE
Ga0187783_108435201	3300017970	Tropical Peatland	LTDVTSETLRQWREAKGWDVPRMARELRKAARDTGEDVEAHHGLVKMIPQWERGSRAP
Ga0187766_107269581	3300018058	Tropical Peatland	VTDVTSQTLRQWRESKGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWERGD
Ga0187772_112796741	3300018085	Tropical Peatland	VTEVTSQTLRRWRESKGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQWERGARAPR
Ga0187770_112771751	3300018090	Tropical Peatland	LTDVTSETLRQWRESKGWDVPRMARELRKATRDTGEDVAAHHGLVKMIPQWER
Ga0210399_110809571	3300020581	Soil	VTDVTSETLRRWREAKGWDVPRMARELRKVARDSGEDVAAHHGLVKMIPQWER
Ga0126371_115987992	3300021560	Tropical Forest Soil	LTDVTSQTLRQWRESQGWDVPRMARELRKAAKDTGEDVAAHHGLVKMIPQWERGNRVP
Ga0126371_130952202	3300021560	Tropical Forest Soil	MRVLADVTGEALRRWRESQGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWERGGRA
Ga0207693_112362892	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VTDVTSETLRQWREAQGWDVPRMARELRRAARDTGEDVAAHHGLVKMIPQ
Ga0207663_112826791	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MRVLTDVTGETLRRWREAKGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQWERGGRAPRERCRL
Ga0207700_105578201	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MTGETLRRWREGQGWDVPRMARELRKVARDSGEDVAAHHGLVKMIPQWERGGRAPRERYRLLY
Ga0207706_112042161	3300025933	Corn Rhizosphere	MRALTDVTSEALRRWRQSQGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQWERGNRAPRERYR
Ga0209238_10399981	3300026301	Grasslands Soil	RESKGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWERGDRAPREPGIRQSRCGSV
Ga0207826_10711881	3300027680	Tropical Forest Soil	MRALTDVTGETLQQWRESQGWDVPRMARELRKAARNSGEDVAAHHGLVKMIP
Ga0318534_105402071	3300031544	Soil	VTDVTSETLRLWRESQGWDVPRMARELRKAARDTGEDVAAHHGLVKM
Ga0318528_102450513	3300031561	Soil	MRALADMTGETLRLWRESQGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQWE
Ga0318573_100703274	3300031564	Soil	LTDVTNETLRLWRESKGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWERGSRAP
Ga0318573_101535821	3300031564	Soil	LTDVTSQTLRQWRESQGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWERG
Ga0318515_100826303	3300031572	Soil	MTDVTSQTLRLLRESKGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWERG
Ga0310915_111620941	3300031573	Soil	MRALTDVTGENLRQWRESQGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQWEQGG
Ga0318574_102048632	3300031680	Soil	MRALTDVTSETLRRWRQSQGWDVPRMARELRRAARDSGEDVAAHHGLVKMIPQWERGDRAPRERY
Ga0318500_102420162	3300031724	Soil	VTDVTSQTLRLLRESKGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWERGNRTPR
Ga0318501_103957141	3300031736	Soil	MRALTDVTSETLRQWRESQGWDVPRMARELRKVARDTGEDVAAHHGLVKMIPQWERGARA
Ga0318502_102262053	3300031747	Soil	LTDVTGEILRSWRQSQGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQWE
Ga0318502_109231882	3300031747	Soil	VADVTSQTLRLWRESKGWDVSRMARELRKAARDTGEDVAAHHGLVK
Ga0318492_104332752	3300031748	Soil	MHALTELTGEKLRWWREAKGWDVPRMARELRKAARDSGEDVAAHHGLVKMIP
Ga0318535_100430531	3300031764	Soil	LTDVTNETLRLWRESKGWDVPRMARELRKAARDTGEDVAAHHGLM
Ga0318554_100178251	3300031765	Soil	LTDVTSQTLRQWRESQGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWE
Ga0318554_101435723	3300031765	Soil	MTDVTSQTLRLLRESKGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWER
Ga0318498_100852701	3300031778	Soil	VTDVTSQTWRLLRESKGWDVPRMARELRRAARDTGEDVAAHHGLVKMIPQWERGNRAPRERYR
Ga0318547_109075992	3300031781	Soil	LADVTGENLRQWRESQGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWE
Ga0318552_103203971	3300031782	Soil	MRALTDVTNETLRQWRQSQGWDVPRMARELRKAAKDSGEDVAAHHGLVKMIPQWE
Ga0318523_100928491	3300031798	Soil	MTDVTSQTLRLLRESKGWDVPRMARELRKAARDTGEDVAAHHG
Ga0318523_103974963	3300031798	Soil	VTDVTSQTLRQWRESKGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQWERGSRAPRE
Ga0318497_102294911	3300031805	Soil	VTDVTSQTLRQWRESKGWDVPRMARELRKAARDSGEDVAAHHGLVK
Ga0318497_102983901	3300031805	Soil	VVTDVTSQTLRLWRESKGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQWERGNRAPR
Ga0318497_106358942	3300031805	Soil	MRALTDVTGENLRQWRESQGWDVPRMARELRKAARDSGEDVAAHHGLVRMIPQWE
Ga0306925_108255771	3300031890	Soil	VTDVTSQTLRLWRESKGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQWERGNRAPRE
Ga0306925_117938531	3300031890	Soil	VTDVTSETLRLWRESQGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWERGSRAPRERYR
Ga0306925_117988541	3300031890	Soil	VSDVTSQTLRQWRESKGWDVPRMARELRKAARDTGEDVAAHHG
Ga0318536_100945461	3300031893	Soil	MLALTDMTSQTLRRWRESQGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQWEQGNRAPRERY
Ga0318536_101814441	3300031893	Soil	LTDVTSQTLRQWRESQGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWERGNRAPRE
Ga0318522_100966211	3300031894	Soil	VTDVTSQTLRLLRESKGWDVPRMARELRKAARDTGEDVAAHHGLVK
Ga0318551_109524362	3300031896	Soil	VSDVTSQTLRQWRESKGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWERGNRVPRERYS
Ga0306926_112969512	3300031954	Soil	VSDVTSQTLRQWRESKGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWE
Ga0306922_109918012	3300032001	Soil	VTDVTSQTWRLLRESKGWDVPRMARELRRAARDTGEDVAAHHGL
Ga0318562_106646112	3300032008	Soil	VTDVTSQTWRLLRESKGWDVPRMARELRRAARDTGEDVAAHHGLVK
Ga0318507_102904641	3300032025	Soil	VTDVTGETLRSWRQSKGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQWERGGRAPRERYR
Ga0318556_107253601	3300032043	Soil	VADVTSQTLRLWRESKGWDVSRMARELRKAARDTGEDVAAHHGLVKMIPQWERG
Ga0318506_101978933	3300032052	Soil	MRALTDVTGDTLRLWRESKGWDVPRMARELRKVARDSGEDVAAHHGLVKMIPQWERGDRVPRERYR
Ga0318570_104989251	3300032054	Soil	MRALTDVTSETLRRWRQSQGWDVPRMARELRRAARDSGEDVAAHHGLVKMIPQWERGDRA
Ga0318570_105354071	3300032054	Soil	LTDVTNETLRLWRESKGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWERGSRAPRE
Ga0318504_104183671	3300032063	Soil	MTDVTSQTLRLLRESKGWDVPRMARELRKAARDTGEDVAAHHGLVKM
Ga0318553_106372421	3300032068	Soil	VTDVTSQTLRQWRESKGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQ
Ga0318525_105095403	3300032089	Soil	LTDVTSQTLRLWRESQGWDVPRMARELRKAARDTGENVAAHHGLVKMIPQWERG
Ga0318518_100113851	3300032090	Soil	LTDVTSQTLRQWRESQGWDVPRMARELRKAARDTGEDVAAHHGLVKMIPQWERGDRAPRE
Ga0335083_115505231	3300032954	Soil	VTDVTGEILRLWRESKGWDVSRMARELRKAARDTGEDVAAHHGPVKMIPQWERGNRVPRERYR
Ga0310914_111629371	3300033289	Soil	LADVTGENLRLWRESKGWDVPRMARELRKAARDSGEDVAAHHGLVKMIPQWERG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096112

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences