Metagenome / Metatranscriptome Family F096129

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096129
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	69 residues
Representative Sequence	MTDTLSAPSKHSEQPRYYRDRATAIRARLPTLQDDEVFTELYLLAAHYERLAEFAESSGSLGVFSRR
Number of Associated Samples	67
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	82.86 %
% of genes near scaffold ends (potentially truncated)	26.67 %
% of genes from short scaffolds (< 2000 bps)	73.33 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (51.429 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (40.000 % of family members)
Environment Ontology (ENVO)	Unclassified (42.857 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (67.619 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.37% β-sheet: 0.00% Coil/Unstructured: 52.63%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF01053	Cys_Met_Meta_PP	2.86
PF03069	FmdA_AmdA	1.90
PF12852	Cupin_6	1.90
PF05957	DUF883	1.90
PF13676	TIR_2	1.90
PF01841	Transglut_core	1.90
PF12833	HTH_18	1.90
PF00912	Transgly	0.95
PF00903	Glyoxalase	0.95
PF00892	EamA	0.95
PF08379	Bact_transglu_N	0.95
PF00041	fn3	0.95
PF10738	Lpp-LpqN	0.95
PF03729	DUF308	0.95
PF11157	DUF2937	0.95
PF04226	Transgly_assoc	0.95
PF06537	DHOR	0.95
PF00589	Phage_integrase	0.95
PF02776	TPP_enzyme_N	0.95
PF07589	PEP-CTERM	0.95
PF00498	FHA	0.95
PF00990	GGDEF	0.95
PF14534	DUF4440	0.95
PF01799	Fer2_2	0.95
PF12681	Glyoxalase_2	0.95
PF00467	KOW	0.95
PF09851	SHOCT	0.95
PF05231	MASE1	0.95
PF08240	ADH_N	0.95
PF12697	Abhydrolase_6	0.95
PF00884	Sulfatase	0.95
PF08530	PepX_C	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	2.86
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	2.86
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	2.86
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	2.86
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	2.86
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	2.86
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	2.86
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	2.86
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	2.86
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	2.86
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	2.86
COG2421	Acetamidase/formamidase	Energy production and conversion [C]	1.90
COG4575	Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family	Translation, ribosomal structure and biogenesis [J]	1.90
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.95
COG0744	Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase	Cell wall/membrane/envelope biogenesis [M]	0.95
COG1305	Transglutaminase-like enzyme, putative cysteine protease	Posttranslational modification, protein turnover, chaperones [O]	0.95
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.95
COG2936	Predicted acyl esterase	General function prediction only [R]	0.95
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	0.95
COG3447	Integral membrane sensor domain MASE1	Signal transduction mechanisms [T]	0.95
COG3488	Uncharacterized conserved protein with two CxxC motifs, DUF1111 family	General function prediction only [R]	0.95
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.95
COG4953	Membrane carboxypeptidase/penicillin-binding protein PbpC	Cell wall/membrane/envelope biogenesis [M]	0.95
COG5009	Membrane carboxypeptidase/penicillin-binding protein	Cell wall/membrane/envelope biogenesis [M]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.43 %
Unclassified	root	N/A	48.57 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.43 %
Unclassified	root	N/A	48.57 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.43 %
Unclassified	root	N/A	48.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.57 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	24.76 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.90 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.95 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.95 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.57 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	11.43 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.95 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.95 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.57 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	7.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.90 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	0.95 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.95 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.57 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	7.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.90 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	0.95 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	0.95 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.57 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	7.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.90 %
Dictyobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Dictyobacteraceae	0.95 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	0.95 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.57 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	7.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.90 %
Dictyobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Dictyobacteraceae → Dictyobacter	0.95 %
Opitutus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus	0.95 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.57 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	7.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.90 %
unclassified Opitutus	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus	0.95 %
Dictyobacter formicarum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Dictyobacteraceae → Dictyobacter → Dictyobacter formicarum	0.95 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.57 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	7.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.90 %
Opitutus sp. GAS368	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus → Opitutus sp. GAS368	0.95 %
Dictyobacter formicarum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Dictyobacteraceae → Dictyobacter → Dictyobacter formicarum	0.95 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY01CYMH1	Not Available	516	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101229848	Not Available	588	Open in IMG/M
3300004479\|Ga0062595_100228595	All Organisms → cellular organisms → Bacteria	1183	Open in IMG/M
3300004479\|Ga0062595_102264615	Not Available	534	Open in IMG/M
3300004631\|Ga0058899_11411177	Not Available	609	Open in IMG/M
3300004631\|Ga0058899_11779040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	853	Open in IMG/M
3300005355\|Ga0070671_101870372	Not Available	534	Open in IMG/M
3300005434\|Ga0070709_10138020	All Organisms → cellular organisms → Bacteria → Proteobacteria	1672	Open in IMG/M
3300005434\|Ga0070709_10888537	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300005439\|Ga0070711_100054676	Not Available	2755	Open in IMG/M
3300005439\|Ga0070711_101361974	Not Available	617	Open in IMG/M
3300005541\|Ga0070733_10054536	All Organisms → cellular organisms → Bacteria	2505	Open in IMG/M
3300005544\|Ga0070686_101768662	Not Available	526	Open in IMG/M
3300005545\|Ga0070695_100278500	All Organisms → cellular organisms → Bacteria	1228	Open in IMG/M
3300005591\|Ga0070761_10015790	All Organisms → cellular organisms → Bacteria → Proteobacteria	4198	Open in IMG/M
3300005591\|Ga0070761_10062441	All Organisms → cellular organisms → Bacteria	2105	Open in IMG/M
3300005602\|Ga0070762_10143373	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1423	Open in IMG/M
3300005602\|Ga0070762_10961012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	584	Open in IMG/M
3300005712\|Ga0070764_10938418	Not Available	543	Open in IMG/M
3300005921\|Ga0070766_10007166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5659	Open in IMG/M
3300005921\|Ga0070766_10090531	All Organisms → cellular organisms → Bacteria	1796	Open in IMG/M
3300006163\|Ga0070715_10251706	Not Available	923	Open in IMG/M
3300006176\|Ga0070765_100867916	Not Available	853	Open in IMG/M
3300006176\|Ga0070765_101096694	Not Available	752	Open in IMG/M
3300006893\|Ga0073928_10597319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	780	Open in IMG/M
3300006914\|Ga0075436_101353644	Not Available	539	Open in IMG/M
3300006954\|Ga0079219_11971129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	554	Open in IMG/M
3300010154\|Ga0127503_11087486	Not Available	608	Open in IMG/M
3300010396\|Ga0134126_10919274	Not Available	983	Open in IMG/M
3300010401\|Ga0134121_11178882	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300011120\|Ga0150983_12991055	Not Available	627	Open in IMG/M
3300011120\|Ga0150983_14563884	Not Available	677	Open in IMG/M
3300012917\|Ga0137395_10718774	Not Available	723	Open in IMG/M
3300012918\|Ga0137396_10946579	Not Available	628	Open in IMG/M
3300015371\|Ga0132258_10412309	All Organisms → cellular organisms → Bacteria → Proteobacteria	3359	Open in IMG/M
3300020199\|Ga0179592_10257453	Not Available	782	Open in IMG/M
3300020579\|Ga0210407_10045993	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus → Opitutus sp. GAS368	3253	Open in IMG/M
3300020579\|Ga0210407_10263492	All Organisms → cellular organisms → Bacteria	1344	Open in IMG/M
3300020581\|Ga0210399_11392299	Not Available	548	Open in IMG/M
3300020582\|Ga0210395_10085670	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2324	Open in IMG/M
3300020582\|Ga0210395_10186117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1556	Open in IMG/M
3300020582\|Ga0210395_10550186	Not Available	868	Open in IMG/M
3300020583\|Ga0210401_10005692	All Organisms → cellular organisms → Bacteria	12798	Open in IMG/M
3300020583\|Ga0210401_10061128	All Organisms → cellular organisms → Bacteria	3548	Open in IMG/M
3300020583\|Ga0210401_10091147	All Organisms → cellular organisms → Bacteria → Proteobacteria	2865	Open in IMG/M
3300020583\|Ga0210401_10174764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2003	Open in IMG/M
3300020583\|Ga0210401_10748751	Not Available	837	Open in IMG/M
3300020583\|Ga0210401_10813548	Not Available	794	Open in IMG/M
3300021088\|Ga0210404_10086405	All Organisms → cellular organisms → Bacteria	1556	Open in IMG/M
3300021171\|Ga0210405_10057050	All Organisms → cellular organisms → Bacteria	3085	Open in IMG/M
3300021178\|Ga0210408_11437959	Not Available	518	Open in IMG/M
3300021180\|Ga0210396_10065801	Not Available	3303	Open in IMG/M
3300021180\|Ga0210396_10321554	Not Available	1368	Open in IMG/M
3300021181\|Ga0210388_10087545	All Organisms → cellular organisms → Bacteria	2652	Open in IMG/M
3300021401\|Ga0210393_10000450	All Organisms → cellular organisms → Bacteria → Proteobacteria	37092	Open in IMG/M
3300021402\|Ga0210385_10000522	All Organisms → cellular organisms → Bacteria	26958	Open in IMG/M
3300021402\|Ga0210385_10425211	All Organisms → cellular organisms → Bacteria	1000	Open in IMG/M
3300021402\|Ga0210385_11470609	Not Available	521	Open in IMG/M
3300021403\|Ga0210397_10658913	Not Available	803	Open in IMG/M
3300021406\|Ga0210386_10052917	All Organisms → cellular organisms → Bacteria	3228	Open in IMG/M
3300021406\|Ga0210386_10173866	Not Available	1813	Open in IMG/M
3300021407\|Ga0210383_10019778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5667	Open in IMG/M
3300021407\|Ga0210383_10033211	All Organisms → cellular organisms → Bacteria	4314	Open in IMG/M
3300021420\|Ga0210394_10000182	All Organisms → cellular organisms → Bacteria → Proteobacteria	152702	Open in IMG/M
3300021420\|Ga0210394_10000649	All Organisms → cellular organisms → Bacteria → Proteobacteria	68294	Open in IMG/M
3300021420\|Ga0210394_10272443	All Organisms → cellular organisms → Bacteria	1482	Open in IMG/M
3300021420\|Ga0210394_10436709	Not Available	1152	Open in IMG/M
3300021432\|Ga0210384_10087855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2793	Open in IMG/M
3300021432\|Ga0210384_10242718	All Organisms → cellular organisms → Bacteria	1621	Open in IMG/M
3300021432\|Ga0210384_10394743	Not Available	1246	Open in IMG/M
3300021433\|Ga0210391_10425685	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300021474\|Ga0210390_10052276	Not Available	3359	Open in IMG/M
3300021477\|Ga0210398_10001436	All Organisms → cellular organisms → Bacteria → Proteobacteria	24677	Open in IMG/M
3300021477\|Ga0210398_10452545	Not Available	1046	Open in IMG/M
3300021477\|Ga0210398_11180319	Not Available	605	Open in IMG/M
3300021477\|Ga0210398_11491375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	526	Open in IMG/M
3300021559\|Ga0210409_10270169	Not Available	1537	Open in IMG/M
3300021559\|Ga0210409_11127262	Not Available	660	Open in IMG/M
3300022515\|Ga0224546_1010375	Not Available	721	Open in IMG/M
3300025906\|Ga0207699_10719025	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300025910\|Ga0207684_10639731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	907	Open in IMG/M
3300025915\|Ga0207693_10181347	Not Available	1657	Open in IMG/M
3300025915\|Ga0207693_10309382	All Organisms → cellular organisms → Bacteria → Proteobacteria	1237	Open in IMG/M
3300025916\|Ga0207663_10156773	Not Available	1602	Open in IMG/M
3300025928\|Ga0207700_10233873	Not Available	1563	Open in IMG/M
3300027867\|Ga0209167_10221598	Not Available	1011	Open in IMG/M
3300027889\|Ga0209380_10162083	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
3300027908\|Ga0209006_10047461	All Organisms → cellular organisms → Bacteria → Proteobacteria	3863	Open in IMG/M
3300028047\|Ga0209526_10373187	All Organisms → cellular organisms → Bacteria → Proteobacteria	951	Open in IMG/M
3300028906\|Ga0308309_10851139	Not Available	792	Open in IMG/M
3300031708\|Ga0310686_101639144	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2638	Open in IMG/M
3300031715\|Ga0307476_10827718	Not Available	684	Open in IMG/M
3300031715\|Ga0307476_11325723	Not Available	525	Open in IMG/M
3300031718\|Ga0307474_10165186	Not Available	1675	Open in IMG/M
3300031740\|Ga0307468_101568325	All Organisms → cellular organisms → Bacteria → FCB group	613	Open in IMG/M
3300031753\|Ga0307477_10307047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Dictyobacteraceae → Dictyobacter → Dictyobacter formicarum	1095	Open in IMG/M
3300031823\|Ga0307478_10158972	All Organisms → cellular organisms → Bacteria	1798	Open in IMG/M
3300031823\|Ga0307478_10468653	Not Available	1048	Open in IMG/M
3300031962\|Ga0307479_10151018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2279	Open in IMG/M
3300031962\|Ga0307479_10237042	All Organisms → cellular organisms → Bacteria → Proteobacteria	1800	Open in IMG/M
3300031962\|Ga0307479_10393717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1370	Open in IMG/M
3300031962\|Ga0307479_10801996	Not Available	917	Open in IMG/M
3300031962\|Ga0307479_11713034	Not Available	582	Open in IMG/M
3300032174\|Ga0307470_10127447	Not Available	1516	Open in IMG/M
3300032180\|Ga0307471_101492438	Not Available	834	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.14%
Host-Associated	Host-Associated	2.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.24%
Plants	Host-Associated → Plants	2.86%
Aquatic	Environmental → Aquatic	1.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.29%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.90%
Freshwater	Environmental → Aquatic → Freshwater	0.95%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.95%
Peat	Environmental → Terrestrial → Peat	0.95%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.71%
Loam	Environmental → Terrestrial → Soil → Loam	28.57%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.95%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.95%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.95%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.95%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	53.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.19%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.38%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.62%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.95%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.95%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	40.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	13.33%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.43%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	10.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.71%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.86%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.90%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.90%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.95%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.95%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.95%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.95%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.95%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022515	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 1-5	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_06709010	2170459010	Grass Soil	LTPSEHSEQSRCYSDRASRYYRDRASAIRARLPTLQDDEVFSELYLLAAHYERLAEFAESSGSLGSVED
INPhiseqgaiiFebDRAFT_1012298481	3300000364	Soil	VMTDLASAPSQHSEQSRYYRGRANAIRARLPTVQDDEIFSELYVLAAHYERLAQFAESSGSLASIED*
Ga0062595_1002285952	3300004479	Soil	MTDPASVPSEHSEQPRYYRDRATAIRARLPTLEDDEAFTELYLLAAYYERLAEFAESAGSLGSVED*
Ga0062595_1022646151	3300004479	Soil	MTDAASAPSKHSEQCRYYRDRATAIRARLPTLQDDEVFTELYLLADHYERLAKFAESSGSLAG
Ga0058899_114111771	3300004631	Forest Soil	MARTQISFAHLEGMTDPASAFKRAQQPRYYRDRATAIRARLPTLQDDEVFTELYLLAAYYERLAEFAESSGSLASVGN*
Ga0058899_117790402	3300004631	Forest Soil	PTRRGPMMTDPGAAPSIHSEPSRGYRDRAIAIRARLPTLKDDEIFVELYLLAAHYERLAEFAESSGPFATLED*
Ga0070671_1018703722	3300005355	Switchgrass Rhizosphere	MTDPASALSKHSEQPHYYRDRATAIRARLPTLHDDEVFTELYLLAAHYERLAEFAESSGSLGVFFRR*
Ga0070709_101380205	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTDAASAPSKHSEQCRYYRDRATAIRARLPTLQDDEVFTELYLLADHYERLAKFAESSGSLAGFSRR*
Ga0070709_108885371	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	RGPVMTDPASVPSEHSEQPRYYRDRATAIRARLPTLEDDEAFTELYLLAAYYERLAEFAESAGSLGSVED*
Ga0070711_1000546765	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTDTLSAPSKHSEQPRYYRDRATAIRARLPTLQDDEVFTELYLLAAHYERLAEFAESSGSLGVFSRR*
Ga0070711_1013619742	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	KQATEDGPVMTDAASAPSKHSEQCRYYRDRATAIRARLPTLQDDEVFTELYLLADHYERLAKFAESSGSLAGFSRR*
Ga0070733_100545362	3300005541	Surface Soil	MTDPAPSRHSEQVRYYHDRAIAIRARLPVVADDEAFIELYLLAAYYERLAEFVESSGSLACIED*
Ga0070686_1017686622	3300005544	Switchgrass Rhizosphere	MTEPLSAPSKHSEQPRYYRDRATAIRARLPTLQDDEVFTELYLLAAHYERLAEFAES
Ga0070695_1002785001	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MTDPASVPSEHSEQPRYYRDRATAIRARLPTLEDDEAFTELYLLAAYYERLAEFAESAGS
Ga0070761_100157905	3300005591	Soil	MMTYPASTASKHPEQSRHYRDLAIAIRDRLAMLEDDELYTELYLLAVHYERLAAFADSSGSLGSFNARVVSN*
Ga0070761_100624412	3300005591	Soil	MMTDSASAPSKQFRYYHDRAIAIRARLPAVEDDEAFIELYLLAAYYERLAEFVESSGSLASVED*
Ga0070762_101433732	3300005602	Soil	MMHSQLAPSEHCEQSRHYRDQASAIRTLLPTLQDDEAFNELYLLAAHYERLAEFADSSGSLESFSDQTYRGRRWGSAET*
Ga0070762_109610121	3300005602	Soil	MTDPAPSRHSEQFRYYHDRAIAIRARLPVVEDDEAFIELYLLAAYYERLAEFVESSGSLACIED*
Ga0070764_109384182	3300005712	Soil	MMTDSASAPSKQFRYYHERAIAIRARLPAVEDDEAFIELYLLAAYYERLA
Ga0070766_100071663	3300005921	Soil	MMTDSASAPSKQFRYYHERAIAIRARLPAVEDDEAFIELYLLAAYYERLAEFVESSGSLASVED*
Ga0070766_100905313	3300005921	Soil	MTYAASGPSLHASQPRYYRDRATAIRARIRTLQDDEVFTELYLLAAYYERLAEFAESSGSLASIED*
Ga0070715_102517062	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MTDTLSAPSKHSEQHHYYRDRATAIRARLPTLHDDEVFTELYLLAAHYERLAEFAESSGSLGVFFRR*
Ga0070765_1008679161	3300006176	Soil	MTYAASGHSLHASQPRYYRDRATAIRARIRTLRDDEVFTELYLLAAYYERLAEFAESSGSLASIED*
Ga0070765_1010966942	3300006176	Soil	MTNPASAPSKHSEQSRYYSGRASRYYSARASAIRARLRTLQDDEVFSELYLLAAHYERLAEFAESSGSFASIED*
Ga0073928_105973191	3300006893	Iron-Sulfur Acid Spring	MTDPAPSRHSEQFRYYHDRAIAIRARLPVVVDDEAFIELYLLAAYYERLAEFVESSGSLACIED*
Ga0075436_1013536441	3300006914	Populus Rhizosphere	MTDTLSAPSKHSEQPHYYRDRATAIRARLPTLHDDEVFTELYLLAAHYERLAEFAESSGSLGVFFRR
Ga0079219_119711292	3300006954	Agricultural Soil	MTDPASAFSKHSEQPHYYRERATAIRARLPTLHDDEVFTELYLLAAHYERLAEFAESSGSLGVFFRR*
Ga0127503_110874862	3300010154	Soil	MTDTASAPSKHSEQSRYYRGQANAIRARLPTVQDDEIFSELYVLAAHYERLAEFADSSGSLASIED*
Ga0134126_109192743	3300010396	Terrestrial Soil	HSEQCRYYRDRATAIRARLPTLQDDEVFTELYLLADHYERLAKFAESSGSLAGFSRR*
Ga0134121_111788822	3300010401	Terrestrial Soil	MTDPASVPSEHSEQPRYYRDRATAIRARLPTLEDDEAFTELYLLAAYYERLAEFADSAGSLGSVED*
Ga0150983_129910552	3300011120	Forest Soil	AVVMTDPASATSKHCEQSRYYRDRATAIRARLPTLQDDEVYNELYLLAAHFERLAEFADSSGPLGSLED*
Ga0150983_145638842	3300011120	Forest Soil	AGGCVPQRQWFGGAKMARTQISFAHLEGMTDPASAFKRAQQPRYYRDRATAIRARLPTLQDDEVFTELYLLAAYYERLAEFAESSGSLASVGN*
Ga0137395_107187741	3300012917	Vadose Zone Soil	PSKRSEHSRYYRDQASAIRARLPTLQDEEAFNELYLLAAHYERLAEFAESSGSLGSVED*
Ga0137396_109465791	3300012918	Vadose Zone Soil	MTDPQSAPSKHCEQSRYYRDRASAIRARLPTLQEEEVYNELYLLAAHYERLAEFADSSGSLGPLGDLTP*
Ga0132258_104123095	3300015371	Arabidopsis Rhizosphere	ASALSKHSEQPHYYRDRATAIRARLPTLHDDEVFTELYLLAAHYERLAEFAESSGSLGVFFRR*
Ga0179592_102574531	3300020199	Vadose Zone Soil	MTDPQSAPSKHCEQSRYYRDRASAIRARLPTLQDEEVYNELYLLAAHYERLAEFTDSSGSPGPLGDLTP
Ga0210407_100459934	3300020579	Soil	MNLASTPSKYSEQSRCYSDRASHYYRDRASAIRARLPTLQDDEVFSELYLLAAHYERLAEFAESSGSLGSVED
Ga0210407_102634922	3300020579	Soil	MTDPQSAPSKHCEQSRYYRDKASAIRARLPTLQDEEVFNELYLLATHYERLAEFADSSGSLGSLGDLTYCSRRWCSAER
Ga0210399_113922991	3300020581	Soil	MMHSQLAPSEHCEQSRHYRDQASAIRTLLPTLQDDEAFNELYLLAAHYERLAEFADSSGSLESFSDQTYRGRR
Ga0210395_100856701	3300020582	Soil	MWRGAKWLGGAEMARMRISCAHRGALAPPQHSEQPRYYRNRATAIRARLPTLQDDEVFAELYLLAAYYERLAEFAKSSGPF
Ga0210395_101861172	3300020582	Soil	MMTDSASAPSKQFRYYHERAIAIRARLPAVEDDEAFIELYLLAAYYERLAEFVESSGSLASVED
Ga0210395_105501861	3300020582	Soil	MANLPSTPSKHCEQSRYYRDRASAIRARLPTLQDDEVFSELYLLAAHYEQLAEFAESSGSLASIED
Ga0210401_1000569214	3300020583	Soil	MARMRISCAHRGASAPPQHAVQPSYYRDRATAIRARLPTLQDDEAFTELYLLASYYEQLAEFAESSGSLGGFSQR
Ga0210401_100611284	3300020583	Soil	MARMRISCAHRGASAPPQHSEQPRYYRDRANAIRARLPTLQDDEVFTELYLLAAYYERLAEFAESSGSLGGFSRR
Ga0210401_100911475	3300020583	Soil	MNLASTPSKYSEQSRSYSDRASHYYRDRASAIRARLPTLQDDEVFSELYLLAAHYERLAEFAESSGSLGSVED
Ga0210401_101747641	3300020583	Soil	MANLPSTPSKHSEQSRYYRDRASAIRARLPTLQDDEVFSELYLLAAHYEQLAEFAESSGSLASIED
Ga0210401_107487511	3300020583	Soil	MWRGAKWLGGAEMARMRISCAHRGALAPPQHSEQPRYYRNRATAIRARLPTLQDDEVFTELYLLAAYYERLAEFAESSGSLGVFSRR
Ga0210401_108135481	3300020583	Soil	MARMRILCAHRGASAPPQHSEEPRYYRDRATAIRARLPTLQDDEVFTELYLLAAYYEQLAEFAELSGSLGGFSRR
Ga0210404_100864052	3300021088	Soil	MMHSQLAPSEHCEQSRHYRDQASAIRTLLPTLQDDEAFNELYLLAAHYERLAEFADSSGSLESFSDQTYR
Ga0210405_100570505	3300021171	Soil	MADLPSTPSKHSEQSRCYRDRASAIRARLPTLQDDEVFSEFYLLAAHYEQLAEFAESSGSLASIED
Ga0210408_114379591	3300021178	Soil	MMHSQLAPSKHCEQSRHYRDQASAIRTLLPTLQDDEAFNELYLLAAHYERLAEFADSSGSLESFSDQTYRGRRWGSAET
Ga0210396_100658013	3300021180	Soil	MARMRISCAHRGASAPPQHAVQPSYYRDRATAIRARLPTLQDDEAFTELYLLASYYEQLAEFAESAGSLGGFSQR
Ga0210396_103215541	3300021180	Soil	AKWLGGAVMARMRISCAHRGALAPPQHSEQPRYYRDRATAIRARLPTLQDDEVFTELYLLAAYYERLAEFAESSGSFGGFSRR
Ga0210388_100875453	3300021181	Soil	MANLPSTPSKHSEQSRYYRDRASAIRTRLPTLQDDEVFSELYLLAAHYEQLAEFAESSGSLASIED
Ga0210393_1000045016	3300021401	Soil	MTDPAPSRHSEQFRYYHDRAIAIRARLPVVVDDEAFIELYLLAAYYERLAEFVESSGSLACIED
Ga0210385_1000052216	3300021402	Soil	MMTYPASTASKHPEQSRHYRDLAIAIRDRLAMLEDDELYTELYLLAVHYERLAAFADSSGSLGSFNARVVSN
Ga0210385_104252111	3300021402	Soil	MMTDSASAPSKQFRYYHERAIAIRARLPAVEDDEAFIELYLLAAYYERLAEFVESSGSLACIED
Ga0210385_114706092	3300021402	Soil	MTDPAPSRHSEQFRYYHDRAIAIRARLPVVEDDEAFIELYLLAAYYERLAEFVESS
Ga0210397_106589132	3300021403	Soil	MARMRISCAHRGALAPPQHSEQPRYYRNRATAIRARLPTLQDDEVFTELYLLAAYYERLAEFAESSGSLGVFSRR
Ga0210386_100529173	3300021406	Soil	MARMRISCAHRGASAPPQHAVQPSYYRDRATAIRARLPTLQDDETFTELYLLASYYEQLAEFAESSGSLGGFSQR
Ga0210386_101738661	3300021406	Soil	MNLASTPSKYSEQSGCYSDRASHYYRDRASAIRARLPTLQDDEVFSELYLLAAHYERLAEFAESSGSLGSVED
Ga0210383_100197782	3300021407	Soil	MTDPAPSRHSEQFRYYHDRAIAIRARLPVVEDDEAFIELYLLAAYYERLAEFVESSGSLACIED
Ga0210383_100332113	3300021407	Soil	MDNLASTPFKRSQQSRYYCDGASRYYRDRASAIRARLTTLQDDEVFSELYLLAAHYERLAEFAESSGSLGRGV
Ga0210394_10000182127	3300021420	Soil	MTDPAPSRHSEQFRYYHDRAIAIRARLPVVQDDEAFIELYLLAAYYERLAEFVESSGSLACIED
Ga0210394_1000064919	3300021420	Soil	MMTDPGAAPSIHSEPSRGYRDRAIAIRARLPTLKDDEIFVELYLLAAHYERLAEFAESSGPFATLED
Ga0210394_102724432	3300021420	Soil	MWRGAKWLGGAEMARMRISCAHRGALAPPQHSEQPRYYRDRATAIRARLPTLQDDEVFAELYLLAAYYERLAEFAKSSGPFGGFSRR
Ga0210394_104367092	3300021420	Soil	MTDPASATSKHCEQSRYYRDRATAIRARLPTLQDDEVYNELYLLAAHFERLAEFADSSGPLGSLED
Ga0210384_100878553	3300021432	Soil	MTNPASAPSKHSEQSRYYSGRASRYYSARASAIRARLRTLQDDEVFSELYLLAAHYERLAEFAKSSGSLGSVED
Ga0210384_102427182	3300021432	Soil	MTHPQSAPSRHCEQSRYYRDQARTIRARLPTLQDEEVFNELYLLAAHYERLAEFADSSGSLGSFGDLT
Ga0210384_103947433	3300021432	Soil	MTDRASATSKHCEQSRYYRDRATAIRARLPTLQDDEVYNELYLLAAHFERLAEFADSSGPLGSLED
Ga0210391_104256851	3300021433	Soil	RGPMMTYPASTASKHPEQSRHYRDLAIAIRDRLAMLEDDELYTELYLLAVHYERLAAFADSSGSLGSFNARVVSN
Ga0210390_100522763	3300021474	Soil	MARMRISCAHRGALAPPQHSEQPRYYRDRATAIRARLPTLQDDEVFTELYLLAAYYERLAEFAESSGSFGGFSRR
Ga0210398_1000143619	3300021477	Soil	MMTYPASTASKHPEQSRHYRDLAIAIRDRLAMLEDDELYTELYLLAVHYERLAAFADSSGSLGSFNARVVLN
Ga0210398_104525451	3300021477	Soil	MWRGAKWLGGAEMARMRISCAHRGALAPPQHSEQPRYYRDRATAIRARLPTLQDDEVFTELYLLAAYYERLAEFAESSGSFGGFSRR
Ga0210398_111803192	3300021477	Soil	MMTDSASAPSKQFRYYHDRAIAIRARLPAVEDDEAFIELYLLAAYYERLAEFVESSGSLASVED
Ga0210398_114913751	3300021477	Soil	PAPSRHSEQFRYYHDRAIAIRARLPVVEDDEAFIELYLLAAYYERLAEFVESSGSLACIE
Ga0210409_102701691	3300021559	Soil	MTDPQSAPSKHCEQSRYYRDQASAIRARLPTLQDEEVFNELYLLATHYERLAEFADSSGSLGSLGDLTYCSRRWCSAER
Ga0210409_111272621	3300021559	Soil	MARMRISCAHRGALAPPQHSEQPRYYRDRATAIRARLPTLQDDEVFTELYLLAAYYEQLAEFAELSGSLGGFSRR
Ga0224546_10103751	3300022515	Soil	MTDPASAPSRHSKHSEQSRYYRDRAIAIRTRLPTLDDDEAFIELYLLAAHYERLAEFAESSGSLGSIIGD
Ga0207699_107190252	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	PSRRGPVMTDPASVPSEHSEQPRYYRDRATAIRARLPTLEDDEAFTELYLLAAYYERLAEFAESAGSLGSVED
Ga0207684_106397312	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VKTNLASTPSKHSEQSRYYRDRASAIRARLPTLQDDEVFSELYLLAAHYERLAEFAESSGSLGVFSRL
Ga0207693_101813471	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	SGGRPAEGLAMTDTLSAPSKHSEQPRYYRDRATAIRARLPTLQDDEVFTELYLLAAHYERLAEFAESSGSLGVFSRR
Ga0207693_103093821	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	EGLAMTDTLSAPSKHSEQCRYYRDRATAIRARLPTLQDDEVFTELYLLADHYERLAKFAESSGSLAGFSRR
Ga0207663_101567731	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MTDTLSAPSKHSEQPRYYRDWATAIRARLPTLQDDEVFTELYLLAAHYERLAEFAESSGSLGVFSRR
Ga0207700_102338733	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MTDTLSAPSKHSEQPRYYRDWATAIRARLPTLQDDEVFTELYLLAAYYERLAEFAESSGSLGVFSRR
Ga0209167_102215981	3300027867	Surface Soil	MTDPAPSRHSEQVRYYHDRAIAIRARLPVVADDEAFIELYLLAAYYERLAEFVESSG
Ga0209380_101620832	3300027889	Soil	SLHASQPRYYRDRATAIRARIRTLQDDEVFTELYLLAAYYERLAEFAESSGSLASIED
Ga0209006_100474613	3300027908	Forest Soil	VIIPASAACKHSEQPRYYRARASAIRARLPTLDDDEVFTELYLLAAYYERLAEFAESSGALGLSDD
Ga0209526_103731871	3300028047	Forest Soil	MAEPASAPFKHCEPSRYYRDRASAIRARLPTLQDDEVFNELYLLAAHFERLAEFAESSGSLASIED
Ga0308309_108511391	3300028906	Soil	MTYAASGHSLHASQPRYYRDRATAIRARIRTLRDDEVFTELYLLAAYYERLAEFAESSGSLASIED
Ga0310686_1016391442	3300031708	Soil	MTDPASAPSRHSEQSRYYHDRAIAIRARLPVVEDDEAFIELYLLAAYYERLAEFVESSGSLACIED
Ga0307476_108277182	3300031715	Hardwood Forest Soil	MTDAASAPSRHSQQSRYYRDRASAIRARLPTLLDDEVFNELYLLAAHYERLAEFAESSGSLASIED
Ga0307476_113257232	3300031715	Hardwood Forest Soil	SAPSKHSDQPHYYRDQATAIRARLPTLQDDEVFAELYLLAAYYDRLAEIAESSGSLGVFFRRLVRTRIAQGEAT
Ga0307474_101651862	3300031718	Hardwood Forest Soil	MTDPASAPSKHSEQPRYYRDRATAIRARLPTLQDDEVFTELYLLAAYYERLAGFAESSGSLGVFSRR
Ga0307468_1015683252	3300031740	Hardwood Forest Soil	MTELTSIPSTHSDQSRYYRARARAIRARLPMLQDDEVFNELYLLAAHYERLAEFAESSGPLASVGN
Ga0307477_103070472	3300031753	Hardwood Forest Soil	MADQLSAPCKHPEQSCFYRDQASVIRARLPTLHDDEIFIELYQLAAYYERLAEFAESSGSLGALED
Ga0307478_101589722	3300031823	Hardwood Forest Soil	MTDAASAPSRHSERPRYYRDRATAIRARLPTLQDDEVFTELYLLAAYYERLAEFAESSGSLGGFSWR
Ga0307478_104686532	3300031823	Hardwood Forest Soil	MARMRISCAHRDASAPTQHSVQPSYYRDRATAIRARLPTLQDDEVFTELYLLASYYEQLAEFAESSGSLGGFSQR
Ga0307479_101510182	3300031962	Hardwood Forest Soil	MTNPASAPSKHSEQPHYYRGQATAIRARLPTLEDEEVFTELYLLAAYYDRLAEFAESSGSLGGFFRR
Ga0307479_102370425	3300031962	Hardwood Forest Soil	MTNPASAPSKHSEQSRYYSARASRYYSARASAIRARLPTLQDDEVFTELYLLAAHYERLAEFAESSGSLASIED
Ga0307479_103937171	3300031962	Hardwood Forest Soil	MTDQVPAPPKHPEHSRFYREQASVIRARLPTLHDDEVVIELYQLAAHYERLAEFAESSGSLEALED
Ga0307479_108019961	3300031962	Hardwood Forest Soil	MTDPAAAASKRLEQPRYYRDRATAIRARLPELQDDEVFTELYLLAAYYERLAEFAESSGSLWSVED
Ga0307479_117130342	3300031962	Hardwood Forest Soil	MTDQLSAPCKHPEQSCFYRDQASVIRARLPTLHDDEIFIELYQLAAYYERLAQFAESSGSLGALED
Ga0307470_101274474	3300032174	Hardwood Forest Soil	MTDTLSAPSKHSEQPRYYRDRATAIRARLPTLHDDEVFTELYLLAAHYERLAEFAESSGSLGVFFRR
Ga0307471_1014924382	3300032180	Hardwood Forest Soil	MTDPASAPSKHSEQPRYYRDKATAIRARLPTLQDDEVFTELYLLAAHYERLAEFAESSGSLGFFSRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096129

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences