Metagenome / Metatranscriptome Family F096134

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096134
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	49 residues
Representative Sequence	MLTSKEYLQQAEECSQLANASSDVYVKEALTELASDFKAMAKDLEQRNER
Number of Associated Samples	96
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	34.29 %
% of genes near scaffold ends (potentially truncated)	55.24 %
% of genes from short scaffolds (< 2000 bps)	90.48 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.143 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (19.048 % of family members)
Environment Ontology (ENVO)	Unclassified (28.571 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.571 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 88.00% β-sheet: 0.00% Coil/Unstructured: 12.00%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF11752	DUF3309	3.81
PF05532	CsbD	2.86
PF08281	Sigma70_r4_2	2.86
PF00106	adh_short	1.90
PF14347	DUF4399	1.90
PF00916	Sulfate_transp	1.90
PF13358	DDE_3	1.90
PF00005	ABC_tran	1.90
PF04542	Sigma70_r2	1.90
PF00664	ABC_membrane	0.95
PF07883	Cupin_2	0.95
PF00313	CSD	0.95
PF13384	HTH_23	0.95
PF00392	GntR	0.95
PF01710	HTH_Tnp_IS630	0.95
PF09361	Phasin_2	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	2.86
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.90
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	1.90
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.90
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.90
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	1.90
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	1.90
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.90
COG3415	CRISPR-associated protein Csa3, CARF domain	Defense mechanisms [V]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.14 %
Unclassified	root	N/A	2.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.14 %
Unclassified	root	N/A	2.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.14 %
Unclassified	root	N/A	2.86 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	92.38 %
Unclassified	root	N/A	2.86 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	92.38 %
Unclassified	root	N/A	2.86 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	81.90 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.71 %
Unclassified	root	N/A	2.86 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	81.90 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.71 %
Unclassified	root	N/A	2.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17412194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2680	Open in IMG/M
2166559005\|cont_contig68276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	746	Open in IMG/M
2170459009\|GA8DASG02JO9LV	Not Available	522	Open in IMG/M
3300000787\|JGI11643J11755_11757868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	647	Open in IMG/M
3300002245\|JGIcombinedJ26739_101034092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	707	Open in IMG/M
3300002911\|JGI25390J43892_10043256	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300002914\|JGI25617J43924_10005116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3966	Open in IMG/M
3300004463\|Ga0063356_103817852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	649	Open in IMG/M
3300004643\|Ga0062591_102294674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	563	Open in IMG/M
3300005147\|Ga0066821_1011256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	654	Open in IMG/M
3300005163\|Ga0066823_10019296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1046	Open in IMG/M
3300005177\|Ga0066690_11060477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	506	Open in IMG/M
3300005181\|Ga0066678_10186594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1318	Open in IMG/M
3300005347\|Ga0070668_100662059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	918	Open in IMG/M
3300005434\|Ga0070709_10094270	All Organisms → cellular organisms → Bacteria	1980	Open in IMG/M
3300005436\|Ga0070713_100367615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1337	Open in IMG/M
3300005437\|Ga0070710_10037746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2650	Open in IMG/M
3300005439\|Ga0070711_100816611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	792	Open in IMG/M
3300005440\|Ga0070705_100342768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1087	Open in IMG/M
3300005444\|Ga0070694_100053698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2728	Open in IMG/M
3300005468\|Ga0070707_100130461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2444	Open in IMG/M
3300005471\|Ga0070698_100837553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	864	Open in IMG/M
3300005536\|Ga0070697_101654003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	572	Open in IMG/M
3300005546\|Ga0070696_101939486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	511	Open in IMG/M
3300005557\|Ga0066704_10728840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	622	Open in IMG/M
3300005598\|Ga0066706_10292300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1280	Open in IMG/M
3300006028\|Ga0070717_10789998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	863	Open in IMG/M
3300006042\|Ga0075368_10509031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300006058\|Ga0075432_10550919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	521	Open in IMG/M
3300006163\|Ga0070715_10159436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1114	Open in IMG/M
3300006172\|Ga0075018_10245271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	865	Open in IMG/M
3300006173\|Ga0070716_100203863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1317	Open in IMG/M
3300006175\|Ga0070712_100295928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1308	Open in IMG/M
3300006603\|Ga0074064_11753837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1162	Open in IMG/M
3300006845\|Ga0075421_100810948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1077	Open in IMG/M
3300006852\|Ga0075433_11654710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	552	Open in IMG/M
3300006854\|Ga0075425_101337774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	811	Open in IMG/M
3300006854\|Ga0075425_102237354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	608	Open in IMG/M
3300006871\|Ga0075434_102326849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300006904\|Ga0075424_101305299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	772	Open in IMG/M
3300007076\|Ga0075435_101383907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	616	Open in IMG/M
3300007076\|Ga0075435_101942502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	517	Open in IMG/M
3300009038\|Ga0099829_10306705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1302	Open in IMG/M
3300009101\|Ga0105247_11847563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504	Open in IMG/M
3300009137\|Ga0066709_103147405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	603	Open in IMG/M
3300009156\|Ga0111538_12041754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	721	Open in IMG/M
3300009162\|Ga0075423_10849290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	967	Open in IMG/M
3300009553\|Ga0105249_10701618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1072	Open in IMG/M
3300010154\|Ga0127503_10073639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1074	Open in IMG/M
3300010304\|Ga0134088_10082280	All Organisms → cellular organisms → Bacteria	1504	Open in IMG/M
3300010371\|Ga0134125_12837814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300010403\|Ga0134123_12916792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	547	Open in IMG/M
3300011120\|Ga0150983_10151831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	894	Open in IMG/M
3300011120\|Ga0150983_13510750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	831	Open in IMG/M
3300011269\|Ga0137392_10951591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	706	Open in IMG/M
3300012180\|Ga0153974_1096434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	669	Open in IMG/M
3300012198\|Ga0137364_10620786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	815	Open in IMG/M
3300012206\|Ga0137380_10837169	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300012212\|Ga0150985_116199113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	584	Open in IMG/M
3300012356\|Ga0137371_11007462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	631	Open in IMG/M
3300012361\|Ga0137360_10238142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1489	Open in IMG/M
3300012683\|Ga0137398_10192422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1342	Open in IMG/M
3300012923\|Ga0137359_10174554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1919	Open in IMG/M
3300012923\|Ga0137359_11185071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	652	Open in IMG/M
3300012924\|Ga0137413_11702217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	518	Open in IMG/M
3300012938\|Ga0162651_100027535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	815	Open in IMG/M
3300012957\|Ga0164303_10268612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	988	Open in IMG/M
3300012960\|Ga0164301_10369446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	993	Open in IMG/M
3300012985\|Ga0164308_11702973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	585	Open in IMG/M
3300012986\|Ga0164304_11773009	Not Available	516	Open in IMG/M
3300012988\|Ga0164306_10731428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	790	Open in IMG/M
3300015374\|Ga0132255_105065611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	558	Open in IMG/M
3300016294\|Ga0182041_10604126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	964	Open in IMG/M
3300018468\|Ga0066662_12095368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	593	Open in IMG/M
3300018468\|Ga0066662_12421409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	552	Open in IMG/M
3300018482\|Ga0066669_10804606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	833	Open in IMG/M
3300020579\|Ga0210407_10426889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1037	Open in IMG/M
3300021405\|Ga0210387_10083371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2643	Open in IMG/M
3300021479\|Ga0210410_10184388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1867	Open in IMG/M
3300025916\|Ga0207663_11094424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	640	Open in IMG/M
3300025922\|Ga0207646_10311154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1423	Open in IMG/M
3300025922\|Ga0207646_10344085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1347	Open in IMG/M
3300025928\|Ga0207700_10610329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	971	Open in IMG/M
3300025928\|Ga0207700_11787816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	540	Open in IMG/M
3300025939\|Ga0207665_11422496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	552	Open in IMG/M
3300026118\|Ga0207675_102247251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	560	Open in IMG/M
3300026304\|Ga0209240_1007799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4039	Open in IMG/M
3300026310\|Ga0209239_1074629	All Organisms → cellular organisms → Bacteria	1475	Open in IMG/M
3300026489\|Ga0257160_1047715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	736	Open in IMG/M
3300026494\|Ga0257159_1030999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	890	Open in IMG/M
3300026494\|Ga0257159_1039322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	796	Open in IMG/M
3300026557\|Ga0179587_10353621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	953	Open in IMG/M
3300027310\|Ga0207983_1036544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	626	Open in IMG/M
3300028047\|Ga0209526_10010683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6327	Open in IMG/M
3300028536\|Ga0137415_10149082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2176	Open in IMG/M
3300028720\|Ga0307317_10261141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	585	Open in IMG/M
3300029636\|Ga0222749_10345675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	778	Open in IMG/M
3300029636\|Ga0222749_10426965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	706	Open in IMG/M
3300030902\|Ga0308202_1154498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	513	Open in IMG/M
3300031231\|Ga0170824_114877422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	539	Open in IMG/M
3300031573\|Ga0310915_10016967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4355	Open in IMG/M
3300031720\|Ga0307469_11813027	Not Available	590	Open in IMG/M
3300031820\|Ga0307473_10735708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	697	Open in IMG/M
3300032180\|Ga0307471_103736100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300034681\|Ga0370546_081919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	541	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.00%
Host-Associated	Host-Associated	19.05%
Engineered	Engineered	0.95%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.10%
Plants	Host-Associated → Plants	18.10%
Aquatic	Environmental → Aquatic	1.90%
Fungi	Host-Associated → Fungi	0.95%
Modeled	Engineered → Modeled	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.81%
Freshwater	Environmental → Aquatic → Freshwater	0.95%
Sediment	Environmental → Aquatic → Sediment	0.95%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.95%
Roots	Host-Associated → Plants → Roots	0.95%
Mycelium	Host-Associated → Fungi → Mycelium	0.95%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.29%
Loam	Environmental → Terrestrial → Soil → Loam	22.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.90%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.90%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.95%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.95%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.95%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.95%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.95%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	19.05%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	14.29%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.38%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.95%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.95%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.95%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.95%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	19.05%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.43%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.62%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.86%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.90%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.95%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.95%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.95%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.95%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.95%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.95%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.95%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.95%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005147	Soil and rhizosphere microbial communities from Laval, Canada - mgLMC	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012180	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA058 MetaG	Host-Associated	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027310	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_00693090	2088090014	Soil	MLTSKKYLQQAEECLKLANASSDVYVKDALTELASDFKAMAKDLEQRNEL
cont_0276.00004400	2166559005	Simulated	MLTSKEYLQQAEECSQLANASSDVYVKEALTELASDFKATAKDLEQRNER
F47_05468480	2170459009	Grass Soil	MLTSKEYLQRAEECSQLANASSDVYVKKALTELASEFKATAKDLE
JGI11643J11755_117578682	3300000787	Soil	MLTSKKYLQQAEECLKLANASSDVYVKDALTELASDFKAMAKDLEQRNEL*
JGIcombinedJ26739_1010340922	3300002245	Forest Soil	MLTSKEYLQRAEQCSQLANASCDAYVKEALAELASEFKAMAKDLEQRNER*
JGI25390J43892_100432561	3300002911	Grasslands Soil	GEFYLLAFGAVMLTSKEYLQQAEECSQLANASSDVYVKEALTELASDFKAMAKDLEQRNER*
JGI25617J43924_100051161	3300002914	Grasslands Soil	MLTSKAYIQQAEECLQLANASSDVYVKEALTELASDFKAMAKDLDQRNER*
Ga0063356_1038178521	3300004463	Arabidopsis Thaliana Rhizosphere	MLTSKEYLQQAEECSQLANASSDVYVKEALTELASDFKAMAKDLEQRNER*
Ga0062591_1022946742	3300004643	Soil	KEYLQQAEECLQLANASSDVYVKDALTELASDFKAMAKDLEQRNEH*
Ga0066821_10112561	3300005147	Soil	MLTSKEYLQQAEECLQLANASSDVYVKDALTELASDFKAMAKDLEQRNEH*
Ga0066823_100192962	3300005163	Soil	MLTSKEYLQRAEECSQLANASSDVYVKKALTELACEFKATAKDLEQRNER*
Ga0066690_110604771	3300005177	Soil	AEECSQLANASSDVYVKKALTELACEFKATAKDLEQRNER*
Ga0066678_101865941	3300005181	Soil	MLTSKEYLQQAEDCSQLANASSDVYVKEALTELASDFKAMAKDLEQRNER
Ga0070668_1006620592	3300005347	Switchgrass Rhizosphere	MLTSKKYLQQAEECLKLANASSDVYVKDALTELASDFKAMAKDLEQRNEH*
Ga0070709_100942702	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MLTSKEYVRQAEDCLQLANASSDVYVREALTELASDFKSIAKALEQRERNA*
Ga0070713_1003676154	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	QAEECLQLANASSDVYVKDALTELASDFKAMAKDLEQRNEH*
Ga0070710_100377467	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	AFGAVMLTSKEYVRQAEDCLQLANASSDVYVREALTELASDFKSIAKALEQRERNA*
Ga0070711_1008166111	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MLTSKKYLQQAEECLQLANASSDVYVKDALTELASDFKAMA
Ga0070705_1003427682	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	KEYLQQAEECSQLANATSDVYVKEALTELASDFKAMAKDLEQRNER*
Ga0070694_1000536984	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MLTSKEYLQQAEECSQLANATSDVYVKEALTELASDFKAMAKDLEQRNER*
Ga0070707_1001304615	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MLTSKEYLQRAEECSQLANASSDVYVKKALTELASEFKATAKDLEQRNER*
Ga0070698_1008375533	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	GLMLTSKEYLQRAEECSQLANASSDVYVKKALTELASEFKATAKDLEQRKER*
Ga0070697_1016540032	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MLTSKAYIQQAEECLQLANASSDVYVKEALTELASDFKAMAKD
Ga0070696_1019394861	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MLTSKEYLQQAEECSQLANATSDVYVKEALTELASDFKAMAKDLEQRNE
Ga0066704_107288402	3300005557	Soil	MLTSKAYLQQAEECLQLANASSDVYVKEALTELASDFKAMAEDLEQRNGR*
Ga0066706_102923001	3300005598	Soil	TSKEYLQQAEECSQLANASSDVYVKEALTELASDFKAMAKDLEQRNER*
Ga0070717_107899981	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	AFGGLMLTSKEYLQRAEECSQLANASSDVYVKKALTELASEFKATAKDLEQRKER*
Ga0075368_105090311	3300006042	Populus Endosphere	MLTSKEYVRQAEDCLQLANASSDVFVREALTELASDFKSIAKALEQRERNA*
Ga0075432_105509191	3300006058	Populus Rhizosphere	MLTSKEYLQQAEECLQLANASSDVYVKDALTELASDFKAMAKDLEQRNER*
Ga0070715_101594363	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MLTSKKYLQQAEECLKLANASSDVYVKDALTELASDFKAMA
Ga0075018_102452711	3300006172	Watersheds	AFGGLMLTSKEYLQRAEECSQLANASSDVYVKKALTELASEFKATAKDLEQRNER*
Ga0070716_1002038631	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MLTSKEYLQQAEECSQLANASSDVYVKKALTELASEFKATAKDVERATNADEE*
Ga0070712_1002959282	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MLTSKKYLQQAEECLQLANASSDVYVKDALTELASDFKAMAKDLEQRNEH*
Ga0074064_117538372	3300006603	Soil	MLTSKEYLQQAEECFQLANASSDVYVKDALTELASDFKAMAKDLEQRNEH*
Ga0075421_1008109482	3300006845	Populus Rhizosphere	MLTSKEYLQQAEDCSQLANAPSDVYVKEALTELASDFKAMAKDLEQRNER*
Ga0075433_116547101	3300006852	Populus Rhizosphere	TSKEYLQRAEECSQLANASSDVYVKKALTELASEFKATAKDLEQRNER*
Ga0075425_1013377741	3300006854	Populus Rhizosphere	MLTSKKYLQQAEECLQLANASSDVYVKDALTELASDFKAMAKDLEQRNE
Ga0075425_1022373542	3300006854	Populus Rhizosphere	MLTSKEYVRQAEDCLQLANASSDVYVREALTELASDFK
Ga0075434_1023268491	3300006871	Populus Rhizosphere	MLTSKEYLQRAEECSQLANASGDVYVKKALTELACEFKATANNER*
Ga0075424_1013052991	3300006904	Populus Rhizosphere	FGAVMLTSKEYVRQAEDCLQLANASSDVYVREALTELASDFKSIAKALEQRERNA*
Ga0075435_1013839072	3300007076	Populus Rhizosphere	MLTSKEYLQRAEECSQLANASSDVYVKEALTELASDFKAMAKDLEQRNER*
Ga0075435_1019425021	3300007076	Populus Rhizosphere	MLTSKKYLQQAEECLKLANASSDVYVKDALTELASDFKAMAKDLEQRNEP*
Ga0099829_103067054	3300009038	Vadose Zone Soil	MLTSKEYLQQAEECLQLANASSDVYVKEALTELASDFKAMAEDLEQRNGR*
Ga0105247_118475632	3300009101	Switchgrass Rhizosphere	MLTSKEYLQRAEECSQLANASSDVYVKEALTELASDF
Ga0066709_1031474052	3300009137	Grasslands Soil	MLTSKEYLQQAEECSQLANASSDVYVKEALTELASDFKAMA
Ga0111538_120417541	3300009156	Populus Rhizosphere	AFGAVMLTSKKYLQQAEECLQLANASSDVYVKDALTELASDFKAMAKDLEQRNEH*
Ga0075423_108492902	3300009162	Populus Rhizosphere	MLTSKAYIQQAEECLQLANASSDVYVKEALTELASDFKAMAKDLERRNER*
Ga0105249_107016183	3300009553	Switchgrass Rhizosphere	SKEYLQQAEECLQLANASSDVYVKEALTELASDFEAMAKELEQRNER*
Ga0127503_100736393	3300010154	Soil	LTSKAYIQQAEECLQLANASSDVYVKEALTELASDFKAMAKDLDQRNER*
Ga0134088_100822801	3300010304	Grasslands Soil	AEECSQLANASSDVYVKEALTELASDFKAMAKDLEQRNER*
Ga0134125_128378142	3300010371	Terrestrial Soil	GAVMLTSKKYLQQAEECLQLANASSDVYVKDALTELASDFKAMAKDLEQRNEH*
Ga0134123_129167921	3300010403	Terrestrial Soil	MLTSKEYVRQAEDCLQLANASSDVYVREALTELASDFKS
Ga0150983_101518311	3300011120	Forest Soil	GAVMLTSKEYVRQAEDCLQLANASSDVFVREALTELASDFKSIAKALEQRERNA*
Ga0150983_135107503	3300011120	Forest Soil	GLMLTSKEYLQRAEECSQLANASSDVYVKKALTELASEFKATAKDLEQRNER*
Ga0137392_109515912	3300011269	Vadose Zone Soil	MLTSKEYLQQAEDCSRLANASSDVYVKEALTELASNFKAMAKDLARNER*
Ga0153974_10964342	3300012180	Attine Ant Fungus Gardens	FLPAFGGLMLTSKEYLQRAEECSQLANASSDVYVKKALTELASEFKATAKDLEQRNER*
Ga0137364_106207862	3300012198	Vadose Zone Soil	MLTSKEYLQQAEDCSQLANASSDVYVKEALTELASDFKAMAKDLEQRNER*
Ga0137380_108371691	3300012206	Vadose Zone Soil	MLRSKEYLQQAEECLQLATASSDVYVKEALTELAS
Ga0150985_1161991131	3300012212	Avena Fatua Rhizosphere	KEYVRQAEDCLQLANASSDVYVREALTELASDFKSIAKALEQRERNA*
Ga0137371_110074621	3300012356	Vadose Zone Soil	LAFGAVMLTSKEYLQQAEDCSQLANAPSDVYVKEALTELASDFKAMAKDLEQRNER*
Ga0137360_102381421	3300012361	Vadose Zone Soil	RERSNYSANCAHERFGAVMLTSKAYIQQAEECLQLANASSDVYVKEALTELASDFKAMAKDLDQRNER*
Ga0137398_101924222	3300012683	Vadose Zone Soil	MLTSKEYLQQAEDCSRLANASSDVYVKEALTELASDFKAMAKDLDQRNER*
Ga0137359_101745543	3300012923	Vadose Zone Soil	LGELYLLAFGAVMLTSKEYLQQAEDCSQLASASSDVYVKEALTELASDFKAMAKELEQRNER*
Ga0137359_111850711	3300012923	Vadose Zone Soil	ANCAHERFGAVMLTSKAYIQQAEECLQLANASSDVYVKEALTELASDFKAMAKDLEQRNER*
Ga0137413_117022171	3300012924	Vadose Zone Soil	MLTSKEYLQQAEDCSQLASASSDVYVKEALTELASDFKAMAKELEQRNER*
Ga0162651_1000275352	3300012938	Soil	MLTSKAYLQQAEECLQLANASSDVYVKEALTELASDFKAMAENLDQRNER*
Ga0164303_102686121	3300012957	Soil	MLTSKEYLQRAEECSQLANASSDVYVKDALTELAS
Ga0164301_103694461	3300012960	Soil	MLTSKEYLQQAEECLQLANASSDVYVKDALTELSSDFKAMAKDLEQRNEH*
Ga0164308_117029732	3300012985	Soil	LMLTSKEYLQRAEECSQLANASSDVYVKKALTELASEFKATAKDLEQRNER*
Ga0164304_117730092	3300012986	Soil	MLTSKEYLQRAEECSQLANASSDVYVKDALTELASDFKAMAKDLEQRNEH*
Ga0164306_107314281	3300012988	Soil	KYLQQAEECLKLANASSDVYVKDALTELASDFKAMAKDLEQRNEP*
Ga0132255_1050656111	3300015374	Arabidopsis Rhizosphere	MLTSKEYVRQAEDCLQLANASTDVYVREALTELASDFKSIAK
Ga0182041_106041262	3300016294	Soil	MLTSKEYLQRAEECSQLANASSDVYVKKALTELACEF
Ga0066662_120953681	3300018468	Grasslands Soil	MLTSKEYLQQAEECSQLANASSDVYVKEALTELASDFKAMAKDLEQRNER
Ga0066662_124214091	3300018468	Grasslands Soil	MLTSKEYVRQAEDCLQLANASSDVYVREALTELASDFKSIAKALEQRERNA
Ga0066669_108046062	3300018482	Grasslands Soil	MLTSKEYLEQAEDCSQLASASSDVYVKEALTELASDFKAMAKDLEQRNER
Ga0210407_104268892	3300020579	Soil	MLTSKEYVRQAEDCLQLANASSDVYVREALTELASDFKSIAKALEQREHHGWMENATVGR
Ga0210387_100833715	3300021405	Soil	MLTSKEYVRQAEDCLQLANASSDVYVREALTELASDFKSIAKALEQREHHGWMENA
Ga0210410_101843884	3300021479	Soil	MLTSKEYVRQAEDCLQLANASSDVYVREALTELASDFKSIAKALEQREH
Ga0207663_110944242	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MLTSKKYLQQAEECLQLANASSDVYVKDALTELASDFKAMAKDLEQRNEP
Ga0207646_103111541	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MLTSKEYLQQAEECSQLANATSDVYVKEALTELASDFKAMAKDLEQRNER
Ga0207646_103440853	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MLTSKEYLQRAEECSQLANASSDVYVKKALTELACEFKAT
Ga0207700_106103291	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MLTSKEYVRQAEDCLQLANASSDVYVREALTELAS
Ga0207700_117878161	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	ELYSRAFSAVILTSKEYLQQAEECLQLANASSDVYVKEALTELASDFEAMAKELEQRNER
Ga0207665_114224961	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MLTSKEYLQQAEECSQLANASSDVYVKEALTELASDFKAMAKDLEQRNE
Ga0207675_1022472511	3300026118	Switchgrass Rhizosphere	LAFGAVMLTSKEYVRQAEDCLQLANASSDVFVREALTELASDFKSIAKALEQRERNA
Ga0209240_10077992	3300026304	Grasslands Soil	MLTSKAYIQQAEECLQLANASSDVYVKEALTELASDFKAMAKDLDQRNER
Ga0209239_10746294	3300026310	Grasslands Soil	GAVMLTSKEYLQQAEECSQLANASSDVYVKEALTELASDFKAMAKDLEQRNER
Ga0257160_10477152	3300026489	Soil	YLQQAEECLQLANASSDVYVKDALTELASDFKAMAKDLEQRNEH
Ga0257159_10309992	3300026494	Soil	MLTSKAYIQQAEECLQLANASGDVYVKEALTELASDFKAMAKDLDQRNER
Ga0257159_10393222	3300026494	Soil	MLTSKEYLQRAEECSQLANASSDVYVKDALTELASDFKAMAKDLEQRNEH
Ga0179587_103536211	3300026557	Vadose Zone Soil	MLTSKAYIQQAEECLQLANASSDVYVKDALTKLASDFKAMAKDLEQRNEH
Ga0207983_10365442	3300027310	Soil	VPSSAFGGLMLTSKEYLQRAEECSQLANASSDVYVKKALTELASEFKATAKDLEQRNER
Ga0209526_100106834	3300028047	Forest Soil	MLTSKEYLQRAEECSQLANASSDVYVKKALTELASEFKATAKDLEQRKER
Ga0137415_101490825	3300028536	Vadose Zone Soil	MLTSKAYIQQAEECLQLANASSDVYVKEALTELASDFKAMAEDLEQRNGR
Ga0307317_102611411	3300028720	Soil	MLTSKEYVRQAEDCLQLANASSDVYVREALTELASDFKSIAKAFEQRERNA
Ga0222749_103456752	3300029636	Soil	MLTSKEYLQRAEECSQLANASSDVYVKKALTELASEIKATAKDLEQRNER
Ga0222749_104269651	3300029636	Soil	MLTSKEYVRQAEDCLQLAKASSDVYVREALTELASD
Ga0308202_11544981	3300030902	Soil	LTSKEYVRQAEDCLQLANASSDVYVREALTELASDFKSIAKALEQRERNA
Ga0170824_1148774222	3300031231	Forest Soil	ERFGAVMLTSKAYIQQAEECLQLANASSDVYVKEALTELASDFKAMAKDLDQRNER
Ga0310915_100169676	3300031573	Soil	MLTSKEYLQRAEECSQLANASSDVYVKKALTELACEFKATAKDLEQRNER
Ga0307469_118130272	3300031720	Hardwood Forest Soil	MLTSKAYLQQAEECLQLANASSDVYVKKALTELACEFKATAKDLEQRNER
Ga0307473_107357082	3300031820	Hardwood Forest Soil	MLTSKEYLQQAEECLQLANASSDVYVKDALTELASDFKAMAKDLDQRNER
Ga0307471_1037361001	3300032180	Hardwood Forest Soil	MLTSKAYLQQAEECLQFANASSDVYVKEALTELASEWPWTWKQR
Ga0370546_081919_257_409	3300034681	Soil	MLTSKEYLQQAEDCSQLANASSDVYVKEALTELASNFKAIAKDLEQRNER

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096134

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences