Metagenome / Metatranscriptome Family F096171

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096171
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	84 residues
Representative Sequence	MFFRFGSKSGKAVPPAGQALEEIHSQLQQQQPLWTEKLAQDPSCFAALEQEVHLRFGQLADQFVASLLAGVANQPALQDAAKKK
Number of Associated Samples	91
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	84.76 %
% of genes near scaffold ends (potentially truncated)	13.33 %
% of genes from short scaffolds (< 2000 bps)	96.19 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (61.905 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.048 % of family members)
Environment Ontology (ENVO)	Unclassified (25.714 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.048 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.25% β-sheet: 0.00% Coil/Unstructured: 43.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF00072	Response_reg	0.95
PF00982	Glyco_transf_20	0.95
PF09509	Hypoth_Ymh	0.95
PF13683	rve_3	0.95
PF07592	DDE_Tnp_ISAZ013	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0380	Trehalose-6-phosphate synthase, GT20 family	Carbohydrate transport and metabolism [G]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.90 %
All Organisms	root	All Organisms	38.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.90 %
cellular organisms	root	All Organisms → cellular organisms	38.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.90 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.90 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	20.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.86 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.90 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	20.00 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.90 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	20.00 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.95 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.95 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.90 %
unclassified Planctomycetia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia	18.10 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.95 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.95 %
Saccharospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Saccharospirillaceae	0.95 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.90 %
Planctomycetia bacterium 21-64-5	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	18.10 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.95 %
Gynuella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Saccharospirillaceae → Gynuella	0.95 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.95 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.90 %
Planctomycetia bacterium 21-64-5	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	18.10 %
Gynuella sunshinyii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Saccharospirillaceae → Gynuella → Gynuella sunshinyii	0.95 %
Zavarzinella	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella	0.95 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	0.95 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.90 %
Planctomycetia bacterium 21-64-5	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	18.10 %
unclassified Zavarzinella	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella → unclassified Zavarzinella	0.95 %
Archangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium	0.95 %
Gynuella sunshinyii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Saccharospirillaceae → Gynuella → Gynuella sunshinyii	0.95 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.90 %
Planctomycetia bacterium 21-64-5	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	18.10 %
Zavarzinella sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella → unclassified Zavarzinella → Zavarzinella sp.	0.95 %
Archangium violaceum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium → Archangium violaceum	0.95 %
Gynuella sunshinyii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Saccharospirillaceae → Gynuella → Gynuella sunshinyii	0.95 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001686\|C688J18823_10882709	Not Available	567	Open in IMG/M
3300002245\|JGIcombinedJ26739_101744211	Not Available	522	Open in IMG/M
3300002568\|C688J35102_118417250	Not Available	557	Open in IMG/M
3300002568\|C688J35102_119767794	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	770	Open in IMG/M
3300004092\|Ga0062389_103659203	Not Available	577	Open in IMG/M
3300004114\|Ga0062593_103264603	Not Available	520	Open in IMG/M
3300004152\|Ga0062386_100143837	All Organisms → cellular organisms → Bacteria	1857	Open in IMG/M
3300004463\|Ga0063356_103055812	Not Available	721	Open in IMG/M
3300004635\|Ga0062388_101138254	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300005093\|Ga0062594_103407559	Not Available	500	Open in IMG/M
3300005332\|Ga0066388_104366789	Not Available	720	Open in IMG/M
3300005355\|Ga0070671_101069136	Not Available	708	Open in IMG/M
3300005365\|Ga0070688_101416362	Not Available	564	Open in IMG/M
3300005436\|Ga0070713_100993588	Not Available	809	Open in IMG/M
3300005466\|Ga0070685_10271455	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	1132	Open in IMG/M
3300005562\|Ga0058697_10838138	Not Available	500	Open in IMG/M
3300005764\|Ga0066903_100295186	All Organisms → cellular organisms → Bacteria	2558	Open in IMG/M
3300005921\|Ga0070766_11064893	Not Available	557	Open in IMG/M
3300009143\|Ga0099792_10134438	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	1344	Open in IMG/M
3300009789\|Ga0126307_10321183	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	1246	Open in IMG/M
3300009789\|Ga0126307_11294127	All Organisms → cellular organisms → Bacteria → Proteobacteria	590	Open in IMG/M
3300009792\|Ga0126374_10383648	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	976	Open in IMG/M
3300009840\|Ga0126313_10932000	Not Available	710	Open in IMG/M
3300010036\|Ga0126305_10258719	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	1121	Open in IMG/M
3300010038\|Ga0126315_10594528	Not Available	714	Open in IMG/M
3300010038\|Ga0126315_11025139	Not Available	554	Open in IMG/M
3300010039\|Ga0126309_10319498	Not Available	904	Open in IMG/M
3300010041\|Ga0126312_10640231	Not Available	766	Open in IMG/M
3300010042\|Ga0126314_11254463	Not Available	555	Open in IMG/M
3300010044\|Ga0126310_10891353	Not Available	692	Open in IMG/M
3300010045\|Ga0126311_11657773	Not Available	539	Open in IMG/M
3300010045\|Ga0126311_11854576	Not Available	512	Open in IMG/M
3300010154\|Ga0127503_10615424	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	980	Open in IMG/M
3300010358\|Ga0126370_11128518	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium → Archangium violaceum	724	Open in IMG/M
3300010371\|Ga0134125_10218830	All Organisms → cellular organisms → Bacteria	2117	Open in IMG/M
3300010375\|Ga0105239_12793829	Not Available	570	Open in IMG/M
3300010379\|Ga0136449_100680443	All Organisms → cellular organisms → Bacteria	1731	Open in IMG/M
3300010379\|Ga0136449_101967778	Not Available	865	Open in IMG/M
3300011120\|Ga0150983_16367499	Not Available	582	Open in IMG/M
3300011271\|Ga0137393_10260522	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	1473	Open in IMG/M
3300012212\|Ga0150985_115243249	Not Available	658	Open in IMG/M
3300012212\|Ga0150985_117185220	Not Available	561	Open in IMG/M
3300012212\|Ga0150985_122418134	Not Available	615	Open in IMG/M
3300012355\|Ga0137369_10182598	All Organisms → cellular organisms → Bacteria	1638	Open in IMG/M
3300012469\|Ga0150984_109956882	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella → unclassified Zavarzinella → Zavarzinella sp.	682	Open in IMG/M
3300012469\|Ga0150984_110272722	Not Available	600	Open in IMG/M
3300012469\|Ga0150984_116101008	Not Available	509	Open in IMG/M
3300012897\|Ga0157285_10332172	Not Available	527	Open in IMG/M
3300012905\|Ga0157296_10303735	Not Available	560	Open in IMG/M
3300012911\|Ga0157301_10441618	Not Available	514	Open in IMG/M
3300012924\|Ga0137413_10508583	Not Available	887	Open in IMG/M
3300012944\|Ga0137410_10499349	Not Available	994	Open in IMG/M
3300012955\|Ga0164298_11456251	Not Available	532	Open in IMG/M
3300012976\|Ga0134076_10549209	Not Available	533	Open in IMG/M
3300014164\|Ga0181532_10700862	Not Available	546	Open in IMG/M
3300014201\|Ga0181537_11169523	Not Available	519	Open in IMG/M
3300015201\|Ga0173478_10543367	Not Available	591	Open in IMG/M
3300015206\|Ga0167644_1042828	All Organisms → cellular organisms → Bacteria	1692	Open in IMG/M
3300015371\|Ga0132258_12608892	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	1262	Open in IMG/M
3300015372\|Ga0132256_101006727	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	949	Open in IMG/M
3300015374\|Ga0132255_104372475	Not Available	599	Open in IMG/M
3300016294\|Ga0182041_11547166	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	611	Open in IMG/M
3300016750\|Ga0181505_10891452	Not Available	507	Open in IMG/M
3300018064\|Ga0187773_10373509	Not Available	818	Open in IMG/M
3300018089\|Ga0187774_10778023	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300018089\|Ga0187774_11205933	Not Available	543	Open in IMG/M
3300018429\|Ga0190272_11948969	Not Available	620	Open in IMG/M
3300018431\|Ga0066655_11004980	Not Available	577	Open in IMG/M
3300018465\|Ga0190269_10216656	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	1050	Open in IMG/M
3300018466\|Ga0190268_10847209	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300018468\|Ga0066662_10554914	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	1063	Open in IMG/M
3300018468\|Ga0066662_11582393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Saccharospirillaceae → Gynuella → Gynuella sunshinyii	683	Open in IMG/M
3300018476\|Ga0190274_11256416	Not Available	826	Open in IMG/M
3300018481\|Ga0190271_12435338	Not Available	626	Open in IMG/M
3300018920\|Ga0190273_10977184	Not Available	695	Open in IMG/M
3300019362\|Ga0173479_10416818	Not Available	653	Open in IMG/M
3300019767\|Ga0190267_10159933	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	999	Open in IMG/M
3300019767\|Ga0190267_10671820	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300019889\|Ga0193743_1055640	All Organisms → cellular organisms → Bacteria	1681	Open in IMG/M
3300020060\|Ga0193717_1039487	All Organisms → cellular organisms → Bacteria	1758	Open in IMG/M
3300020061\|Ga0193716_1125930	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	1063	Open in IMG/M
3300021432\|Ga0210384_10551275	Not Available	1037	Open in IMG/M
3300021439\|Ga0213879_10016373	All Organisms → cellular organisms → Bacteria	1711	Open in IMG/M
3300021474\|Ga0210390_10294406	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	1375	Open in IMG/M
3300021478\|Ga0210402_11100440	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	722	Open in IMG/M
3300023046\|Ga0233356_1030713	Not Available	648	Open in IMG/M
3300024430\|Ga0196962_10156751	Not Available	723	Open in IMG/M
3300027619\|Ga0209330_1072264	Not Available	786	Open in IMG/M
3300027738\|Ga0208989_10225806	Not Available	615	Open in IMG/M
3300027795\|Ga0209139_10315719	Not Available	548	Open in IMG/M
3300028578\|Ga0272482_10093631	Not Available	843	Open in IMG/M
3300028906\|Ga0308309_11866694	Not Available	507	Open in IMG/M
3300030741\|Ga0265459_13714263	Not Available	535	Open in IMG/M
3300031057\|Ga0170834_103804603	Not Available	563	Open in IMG/M
3300031058\|Ga0308189_10412607	Not Available	561	Open in IMG/M
3300031548\|Ga0307408_101478575	Not Available	642	Open in IMG/M
3300031708\|Ga0310686_103747932	All Organisms → cellular organisms → Bacteria	2069	Open in IMG/M
3300031708\|Ga0310686_103927737	All Organisms → cellular organisms → Bacteria	2126	Open in IMG/M
3300031753\|Ga0307477_10611854	Not Available	734	Open in IMG/M
3300031879\|Ga0306919_10170268	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	1602	Open in IMG/M
3300031912\|Ga0306921_10600584	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	1273	Open in IMG/M
3300032001\|Ga0306922_10346038	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	1595	Open in IMG/M
3300032159\|Ga0268251_10291516	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	674	Open in IMG/M
3300032515\|Ga0348332_12737963	Not Available	630	Open in IMG/M
3300032515\|Ga0348332_12881170	Not Available	506	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.71%
Host-Associated	Host-Associated	14.29%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.10%
Plants	Host-Associated → Plants	14.29%
Aquatic	Environmental → Aquatic	7.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.19%
Freshwater	Environmental → Aquatic → Freshwater	7.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.71%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.90%
Phylloplane	Host-Associated → Plants → Phylloplane	1.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.05%
Loam	Environmental → Terrestrial → Soil → Loam	13.33%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.76%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.76%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.86%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.90%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	1.90%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.95%
Sand	Environmental → Terrestrial → Soil → Sand	0.95%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.62%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.86%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.86%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.86%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.90%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.90%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.95%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.95%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.05%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	11.43%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.76%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.86%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.86%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.86%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.86%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.90%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.90%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.90%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	1.90%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.95%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.95%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.95%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.95%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.95%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.95%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.95%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.95%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015206	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019889	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2	Environmental	Open in IMG/M
3300020060	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2	Environmental	Open in IMG/M
3300020061	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300023046	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS	Environmental	Open in IMG/M
3300024430	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20	Environmental	Open in IMG/M
3300027619	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300028578	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J18823_108827091	3300001686	Soil	MFFRFGSKSGKAVPPAGQALEDIHSQLQQQQPLWTEKLAHDPSCFAALEQEVHLRFGQLADQFVAGLLAGVANQHTLXDAAKKK*
JGIcombinedJ26739_1017442111	3300002245	Forest Soil	MFFRSGSKAGDAVPPAQQALDDMHTQLTQQQQRWADLLARDPAAFAALEQEIHLCFGRFADQVVASLLAGAAAQPALGQAAQKK*
C688J35102_1184172502	3300002568	Soil	MFFRFGSKSGEAVPDAQRALQDIHARLQQQQQLWAERLAKDPGCFATLEQEIHHQFGRLADQLVASLLSGAASQPALAEASKKK*
C688J35102_1197677941	3300002568	Soil	MFFRLGSKSGKAVPPAGQALEAIHSQLQRQQHLWTEKLARDPSCFAALEQEVHLRFGQLADQFVAGLLVGVADQPALQDAAKKK*
Ga0062389_1036592031	3300004092	Bog Forest Soil	MFFRFGTKAGAAVPPAQQALRGIHSQLQQQQQLWADKLAQDPACFPSLEQEIHLRFGQLADQFVASLLAGAAEQPALADAAKKK*
Ga0062593_1032646032	3300004114	Soil	MFFRFGSKSGKAVPPAGQALEEIHSQLQQQQQLWTEKLAQDPSCFAALELEVHLRFGQLADQFVASLLAGVANLPALQDAAKKK*
Ga0062386_1001438372	3300004152	Bog Forest Soil	MFFRFGAKSGAAIPPAGQAVQDIHTQLQQQQLLWADKLAGDPACFAALEQEIHLRFGQLADHLVASLLAGTAEQPALKDAAKKK*
Ga0063356_1030558122	3300004463	Arabidopsis Thaliana Rhizosphere	MFFRFGSKSGKAVPPGGQALEEIHSQLQQQQPLWTEKLAQDPSCFAALEQEVHLHFGQLADQFVASLLAGVASQPALQDAAKKK*
Ga0062388_1011382542	3300004635	Bog Forest Soil	MFFRFHSKSGEAVPPAEQALARIHEQLQQQKQTWAEQLARDPASFAVLEQEIHLRFGQHADQLVAGLLAGVAGQPALQEAAKKK*
Ga0062594_1034075591	3300005093	Soil	MFFRFRAKSGEAVPPTQEALAGIQSQLQRHQQLWAQRLAQDPGCFATLEQEVHLRFGQLADQLVASLLAGAAGQPSLQEAAKKK*
Ga0066388_1043667891	3300005332	Tropical Forest Soil	MFFRFRSKSGEAVPPAQQALQDIRSQLQQQQQLWAEKLAQDPACFATLEQEVHLRFGQLADQLVASLLAGVASQPALQDAAKKK*
Ga0070671_1010691362	3300005355	Switchgrass Rhizosphere	MFFRFGSKSGKAVPPAGQALEDIHSQLQQQQPLWTEKLAHDPSCFAPLEQEVHLRFGQLADQFVAGLLAGVANQHTLHDAAKKK*
Ga0070688_1014163621	3300005365	Switchgrass Rhizosphere	MFFRFGSKSGKAVPPGGQALEEIHSQLQQQQPLWTEKLAQDPSCFAALEQEVHLRFGRLADQFVASLLAGVASQPALQDAAKRK*
Ga0070713_1009935881	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MFFRFGSKSGKAVPPGGQALEEIHSQLQQQQPLWTEKLAQDPSCFAALEHEVHLHFGQLADQFVASLLAGVASQPALQDAAKKK*
Ga0070685_102714551	3300005466	Switchgrass Rhizosphere	MFFRFGSKSGKAVPPAGQALEDIHSQLQQQQPLWTEKLAHDPSCFAALEQEVHLRFGQLADQFVAGLLAGVANQHTLHDAAKKK*
Ga0058697_108381381	3300005562	Agave	MFFRFSSKSGKAVPPAGQALEAIHSQLQQQQHLWTEKLSQDPSCFAALEQEVHLRFGQLADQFVAGLLAGVANQPALQDAAKKK*
Ga0066903_1002951865	3300005764	Tropical Forest Soil	MFFRFKTKSGEAVPPTREALADIQAQLQQQQQLWSQRLARDPSCFAALEQEVHLRFGQLADQLVASLLAGAADQPALPEAAQKK*
Ga0070766_110648932	3300005921	Soil	MFFRFGTKAGAAVPPAQQALQGIHSQLQQQQQLWADKLAQDPACFPSLEQEIHLRFGQLADQLVASLLAGAAEQPALDDAAKKK*
Ga0099792_101344381	3300009143	Vadose Zone Soil	MYFRFGSKSGKAVPPAGQALEEIHFQLQQQQPLWTEKLAQDPSCFAALEQEVHLRFGQLADQFVASLLAGVASQPALQDAAKKK*
Ga0126307_103211831	3300009789	Serpentine Soil	MFFRFGSKSGKAVPPAGQALEEIHSQLQQQQRLWAETLAQDPSCFAALEHEVHLRFGQLADQFVASLLAGVASQPALQDAAKKK*
Ga0126307_112941272	3300009789	Serpentine Soil	MFFRFGSKSGKAVPPAGQALEDIHSQLQQQQPLWTETLAQDPSCFAALEQEVHLRFGQLADQFVASLLAGVANQPALQDAAKKK*
Ga0126374_103836481	3300009792	Tropical Forest Soil	MFFRFRSKSGEAVPPAQEALAGIQSQLQQMQQLWAERLAQDPGCFASLEQEVHLRFGQLAGQLVASLLAGAAGQPALTEAAKKK*
Ga0126313_109320002	3300009840	Serpentine Soil	MFFRFGSKSGKAVPPAGQALEEVHSQLQQQQHLWTEKLAQDPSCFAALEQEVHLRFGQLADQFVASLLAGVASQPALQDAAKKK*
Ga0126305_102587191	3300010036	Serpentine Soil	MFFRFGSKSGKAVPSARQALKGIHSQLQQQQQLWTEKLAQDPSCFAALEQEVHLRFGQLADQFVAGLLAGVANQHTLHDAAKKK*
Ga0126315_105945281	3300010038	Serpentine Soil	MIFRFGSKSGEAVPPTQQALQDIHSQLQQQQRLWAEKLAHDPACFASLEQAIHLRFGQLADQLVASLLAGAANQPALPEAAKKK*
Ga0126315_110251392	3300010038	Serpentine Soil	MFFRFGSKSGKAVPPAGQALEDIHFQLQQQQQLWTEKLAQDPSCFAALEQEVHLRFGQFADQFVASLLAGVASQPALQDAAKKK*
Ga0126309_103194981	3300010039	Serpentine Soil	MFFRFGSKSGKAVPPAGQALQDIHFQLQQQQQLWTEKLAQDPSCFTALEQEVHLRFGQLADQFVASLLAGVANQPALQDAAKKK*
Ga0126312_106402312	3300010041	Serpentine Soil	MFFRFGSKSGKAVPPAGQALEEIHFQLQQQQQLWTEKLAQDPSCFAALEQEVHLRFGQLADQFVASLLAGVASQPALQDAAKKK*
Ga0126314_112544631	3300010042	Serpentine Soil	MFFRFGSKSGKAVPPAGQALEEVHSQLQQQQHLWTEKLAQDPSCFAALEQEVHLRFGQLADQFVASLLAGIANQPALHDAAKKK*
Ga0126310_108913532	3300010044	Serpentine Soil	MFFRFGSKSGKAVPPAGQALEEIHSQLQQQQQLWTGKLAQDPSCFAALEQEVHLRFGQLADQFVASLLAGVASQPALQDAAKKK*
Ga0126311_116577732	3300010045	Serpentine Soil	FFRFGSKSGKAVPPAGQALEDIHSQLQQQQQLWTGKLAQDPSCFAALEQEVHLRFGQLADQFVASLLAGVASQPALQDAAKKK*
Ga0126311_118545761	3300010045	Serpentine Soil	MFFRFGSKSGKAVPPAGQALEEVHSQLQQQQHLWTEKLAQDPSCFAALEQEVHLRFGQLADQFVASLLAGIASQPALQDAAKKK*
Ga0127503_106154241	3300010154	Soil	RGRAMFFRFKTKFGEAIPPAQETLAAIQAQLQQQQQFWAQRLAQDPACFATLEQEVHLRFGQLADQLVASLLAGAAAQPALPEAAKKK*
Ga0126370_111285182	3300010358	Tropical Forest Soil	MFFRFKTKSGQAVPPTQEALADIQAQLQQQQQLWSQRLARDPSCFAALEQEVHLRFGQLADQLVASLLAGAADQPALPEAAQKK*
Ga0134125_102188303	3300010371	Terrestrial Soil	MFFRFHSKSGAAVPPAEQALAHIHEQLQQQQQTWAEQLARDPASFAVLEQEIHLHFGQHADQLVAGLLAGVAGQPALQEAAKKK*
Ga0105239_127938292	3300010375	Corn Rhizosphere	MLFRFGSESGKAVPPAGQALEEIHSQLQQQQQLWTEKLAQDPSCFAALEQEVHLRFGQLADQLVASLLAGAAGQPALQEAAKKK*
Ga0136449_1006804432	3300010379	Peatlands Soil	MFFRFGSKSGEAVPAAPQALQDIQAQLQQQQRLWAEKLAKDPACFATLEQEVHLRFGELADKLVASLLAGAAAQPALDQAAKKK*
Ga0136449_1019677781	3300010379	Peatlands Soil	MFFRFGTTAGVAVPPAQQTLQGIHAQLQQQQQLWADKLAQDPACFPALEQEIHLRFGQLADQLVASLLAGAAEQPALADAAKKK*
Ga0150983_163674992	3300011120	Forest Soil	MVFRFGSKSGQAVPPAGQALEDIHFQLQQQQQLWTEKLAQDPSCFAALEQEVHLRFGQLADQFVASLLAGVASQPALQDAAKKK*
Ga0137393_102605221	3300011271	Vadose Zone Soil	MFFRFRSKSGEVVPLAQQALVDIHANLQQQQQLWADKLAQDPACFASLEHEIHLRFGQLADQLVASLLAGAAAQPALTDAAKKK*
Ga0150985_1152432491	3300012212	Avena Fatua Rhizosphere	MLFRFGSKSGAAVPPAQQALTGIHAQMQQQQQLWAQGLAEDPASFASIEQEVHLRFGQFADHLVASLLAGAAGEPALQEAAKKK*
Ga0150985_1171852201	3300012212	Avena Fatua Rhizosphere	MFFRFGSKSGEAVPDAHRALQDIHARLQQQQQLWAERLAKDPGCFATLEQEIHHQFGRLADQLVASLLSGAASQPALAEASKKK*
Ga0150985_1224181341	3300012212	Avena Fatua Rhizosphere	MFFRFGSKSGKAVPPAGQALEEIHSQLQQQQHLWTEMLSQDPSCFAALEHEVHLRFGQLADQFVAGLLAGVANQPALQDAAKKK*
Ga0137369_101825981	3300012355	Vadose Zone Soil	MFFRFGSKSGKAVPPAGQALEEIHFQLQQQQQLWTEKLAQDPSCFAALEQEVHLRFGQLADQVVASLLAGVASQPALQDAAKKRHSSPNTTARCAGFNVNCP
Ga0150984_1099568822	3300012469	Avena Fatua Rhizosphere	MVFRFGSKSGEAVPDAQRALQDIHARLQQQQQLWAERLAKDPGCFATREQEIHHQFGRLADQLVASLLSGAPSQPALAEASKKK*
Ga0150984_1102727221	3300012469	Avena Fatua Rhizosphere	MFFRFGSKSGKAVPPAGQALEDIHSQLQQQQQLWTEELAQDPSCFAALEQEVHLRFGQLADQFVASLLAGVANQPALQDAAKKK*
Ga0150984_1161010081	3300012469	Avena Fatua Rhizosphere	MFFRFGSKSGKAVPPAGHALEDIHSQLQQPQPLWTEKLAHDPSCFAALEQEVHLRFGQLADQVVASLLAGVASQPALQDAAKKK*
Ga0157285_103321721	3300012897	Soil	MFFRFGSKSGQAVPPAGQALEGIHFQLQQQQQLWTEKLAQDPSCFAALEQEVHLRFGQLADQFVAGLLAGVANQRTLHDAAKKK*
Ga0157296_103037351	3300012905	Soil	MFFRFGSKSGKAVPPAGQALEEIHSQLQQQQPLWTEKLAQDPSCFAALEQEVHLRFGQLADQFVAGLLAGVANQRTLHDAAKKK*
Ga0157301_104416181	3300012911	Soil	MFFRFGSQSGEAVPPAQQALADIHSQLHRQQQRWAEQLAQDPACFAALEQEIHLHFGQLADQLVASLLAGVANQPALQDAAKKK*
Ga0137413_105085831	3300012924	Vadose Zone Soil	MFFRFGSKSGKAVPPAGQALEGIHFQLQQQQPLWTEKLAQDPSCFAALEQEVHLRFGQLADQFVAGLLAGVANQPALQDAAKKK*
Ga0137410_104993492	3300012944	Vadose Zone Soil	MFFRFGTKAGAAIPPTQQALQGIHSQLQQQQQLWADQLAHDPACFPSLEQEIHLRFGQLADQLVASLLARVVREAVLDEAAQKK*
Ga0164298_114562511	3300012955	Soil	MFFRFGSKSGKAVPPAGQALEGIHFQLRQQQQLWTEKLAQDPSCFAALEQEVHLRFGQLADQFVAGLLAGVASQPALRDAAKKK*
Ga0134076_105492091	3300012976	Grasslands Soil	MFFRFGTKAGAAVPPTQQMLQGIHSQLQQQQQLWADQLAHDPACFPSLEQEIHLRFGQLADQLVASLLAGAAEQPALDQAAKKK*
Ga0181532_107008622	3300014164	Bog	MFFRFGSKSGEAVPAAPQALQDIQAQLQQEQQTWAEKLAKDPACFASLEQEVHLRFGQLADKLVASLLAGAAAQPSLDQAAKKK*
Ga0181537_111695232	3300014201	Bog	MFFRFGSTAGAAVPPAQQALQGIHAQLQQQQQLWADKLTQDPACFPALEHEIHLRFGQLADQLVASLLAGTAEQPALADAAKKK*
Ga0173478_105433671	3300015201	Soil	MFFRFGSKSGKAVPPGGQALQDIRSQLQQRQQLWAEKLAQDPSCFAALEQEVHLRFGQLADQFVASLLAGVASQPALQDAAKKK*
Ga0167644_10428282	3300015206	Glacier Forefield Soil	MFFRFGTKTGAAVPPTQQALQGIHAHLQQQQQLWADQLAHDPACFPALEQEIHLRFGQLADQLVASLLAGTAQQPTLADAAKKK*
Ga0132258_126088922	3300015371	Arabidopsis Rhizosphere	KEREQGQGGWSMFFRFGSQSGKAVPPAGQALEDIHSQLQQQQHLWTEKLAQDPSCFAALEQEVHLRFGQLADQFVASLLAGVANQPALQDAAKKK*
Ga0132256_1010067272	3300015372	Arabidopsis Rhizosphere	FRFRSKSGEAVPPAQQALQDIRSQLQQQQQLWAEKLAQDPACFATLEQEVHLRFGQLADQFVASLLAGVANQPALQDAAKKK*
Ga0132255_1043724751	3300015374	Arabidopsis Rhizosphere	MFFRFGSKSGKAVPPAGQALEGIHFQLQQQQQLWTEKLAQDPSCFAALEQEVHLRFGQLADQVVASLLAGVASQPALQDAAKKN*
Ga0182041_115471661	3300016294	Soil	MFFRFRSKSGEVVPPAQEALAAIQAQLQQQQQLWAQRLAQDPACFATLEQEVHLRFGQLADQLVASLLAGAAGQPA
Ga0181505_108914522	3300016750	Peatland	SMFFRFGTKAGAAVPPAQQALQGIHSQLQQQQQLWADKLAQDPACFPSLEQEIHLRFGQLADQLVASLLAGAAEQPALDDAAKKK
Ga0187773_103735091	3300018064	Tropical Peatland	SKSGEAVPPAPQALADIHSQLQQQQHFWAEKLAQDPACFAALEQEVHLRFGQLADQLVASLLAGVANQAALQEAAQKK
Ga0187774_107780231	3300018089	Tropical Peatland	MFFRFGSKAGKAVPPAGQALEEIHSQLQQQQQLWTEQLAQDPSCFAALEQEVHLRFGQLADQVVASLLAGVASQPALQDAAKKK
Ga0187774_112059331	3300018089	Tropical Peatland	MFFRFGSKSGEAVPPAPQALADIHSQLQQQQHFWAEKLAQDPACFVALEQEVHLRFGQLADQLVASLLAGVANQAALQEAAQKSS
Ga0190272_119489692	3300018429	Soil	MFFRFGSKSGKAVPPAGQALEEVHSQLQQQQHLWTDKLAQDPSCFAALEQEVHLRFGQLADQFVASLLAGVAYQPALQDAAKKK
Ga0066655_110049801	3300018431	Grasslands Soil	MFFRFGSEAGKAVPPAGQALEEIHSQLQQQQQLWTEKLARDPSCFAALEQEVHLRFGQLADQFVAGLLAGVANQPALHDAAKKK
Ga0190269_102166562	3300018465	Soil	MFFRFGSKSGKAVPPAGQALEEIHFQLQQQQPLWTEKLAQDPSCFAALEQEVHLRFGQLADQFVASLLAGVANQPALQDAAKKK
Ga0190268_108472091	3300018466	Soil	MFFRFGSKSGKAVPPAGQALEEVHSQLQQQQHLWTEKLAQDPSCFAALEQEVHLRFGQLADQYVAGLLAGVANQPTLQDAAKKK
Ga0066662_105549142	3300018468	Grasslands Soil	MFFRFGSKFGEAVPPAEQALQQIQFQLQQQQRLWAEKLAQDPSCFDALEEEVHLRFGRLADQLVASLLASVADHPARPEAAKKK
Ga0066662_115823931	3300018468	Grasslands Soil	MVFRFGSKSGKAVPPAGQALEEIHSQLQQQQHLWTDKLARDPSCFAALEQEVHLRFGQLADQFVAGLLAGVADQPALQDAVKKK
Ga0190274_112564162	3300018476	Soil	MFFRFGSKSGKAVPPAGQALEDIHSQLQQQQPLWTEKLAHDPSCFAALEQEVHLRFGQLADQFVAGLLAGVANQHTLHDAAKKK
Ga0190271_124353381	3300018481	Soil	MFFRFGSKSGKAVPPGGQALEEIHSQLQQQQPLWTEKLAQDPSCFAALEQEVHLHFGQLADQFVASLLAGVASQPALQDAAKKK
Ga0190273_109771841	3300018920	Soil	MFFRFGSKSGKAVPPAGQALEEIHSQLQQQQPLWTEKLAQDPSCFAALEQEVHLRFGQLADQFVASLLAGVANQPALQDAAKKK
Ga0173479_104168182	3300019362	Soil	MFFRFGSKSGKAVPPAGQALEDIHSQLQQQQPLWTEKLAHDPSCFAALEQEVHLRFGQLADQFVASLLAGVANQPALQDAAKKK
Ga0190267_101599331	3300019767	Soil	RPQKCSRAPSWVECKERSSGQGGWSMFFRYGSKSGKAVPPVGQALEDIHSQLQQQQHLWTEKLAQDPSCFAALEQEVHLRFGQLADQFVAGLLAGVANRPALQDAAKKK
Ga0190267_106718202	3300019767	Soil	MFFRFGSKSGKAVPPAGQALEDIHSQLQQQQSLWTEKLAHDPSCFAALEQEVHLRFGQLADQFVAGLLAGVANQRTLHDAAKKK
Ga0193743_10556401	3300019889	Soil	MFFRFGSKSGQAVPPAGQALEGIHFQLQQQQQLWTEKLARDPSCFAALEQEVHLRFGQLADQFVASLLAGVANQPALQDAAKKK
Ga0193717_10394871	3300020060	Soil	MFFRFGSKSGKAVPPGGQALEGIPFQLQQQQQLWTEKLARDPSCFAALEQEVHLRFGQLADQFVASLLAGVANQPALQDAAKKK
Ga0193716_11259301	3300020061	Soil	MFFRFGSKSGKAVPPGGQALEGIHFQLQQQQQLWTEKLARDPSCFAALEQEVHLRFGQLADQFVASLLAGVANQPALQDAAKKK
Ga0210384_105512751	3300021432	Soil	MFFRFGSKSGKAVLPAGQALEEIHSQLQQQQQLWTEKLAQDPSCFAALEQEVHLRFGQLADQLVAGLLAGVANQPALQDAAKKK
Ga0213879_100163731	3300021439	Bulk Soil	MFFRFGSKSGKAVPPAGQALEEIHFQLQQQQQLWTEKLAQDPSCFAALEQEVHLRFGQLADQFVASLLAGVANQPALQDTAKKK
Ga0210390_102944062	3300021474	Soil	MFFRFRSKSGAAVPPAPQALHDLHAQLQQQQQHWADKLARDPACFAALEQEIHLHFGQLADQLVASLLAGAAAQPTLDEAAKKK
Ga0210402_111004401	3300021478	Soil	MFFRFGSKSGKAVPPARQALEEIHSQLQQQQQLWTETLAQDPSCFAALEQEVHLRFGQLAAQFVASLLAGVANQPALQDAAKKK
Ga0233356_10307132	3300023046	Soil	MFFRFGSKSGKAVPPAGQALEEIHFQLQHQQQLWTEELAQDPSCFAALEHEVHLRFGQLADQFVASLLAGVANQPALQDAAKKK
Ga0196962_101567512	3300024430	Soil	MFFRFGSKSGKAVPPAGQALEEIHFQLQQQQQLWTEKLAQDPSCFAALEHEVHLRFGQLADQFVAGLLAGVADPPILQDAAKKK
Ga0209330_10722642	3300027619	Forest Soil	MFFRSGSKAGDAVPPAQQALDDMHTQLTQQQQRWADLLARDPAAFAALEQEIHLCFGRFADQVVASLLAGAAAQPALGQAAQKK
Ga0208989_102258061	3300027738	Forest Soil	MFFRFGSKSGKAVPPAGQALEEIHFQLQQQQQLWTEELAQDPSCFAALEHEVHLRFGQLADQFVASLLAGVANQPALQDAAKKK
Ga0209139_103157192	3300027795	Bog Forest Soil	MFFRFHSKSGEAVPPAEQALAHIHEQLQQQKQTWAEQLARDPASFAVLEQEIHLRFGQHADQLVAGLLAGVAGQPALQEAAKKK
Ga0272482_100936312	3300028578	Soil	MFFRFGSKSGKAVPPAGQALEEIHFQLQQQQQRWTEKLAQDPSCFAALEQEVHLRFGQLADQFVASLLAGVANQPALQDAAKKK
Ga0308309_118666942	3300028906	Soil	KAGDAVPPAQQALDDMHTQLTQQQQRWADLLARDPAAFAALEQEIHLCFGRFADQVVASLLAGAAAQPALGQAAQKK
Ga0265459_137142631	3300030741	Soil	MFFRFGTKAGAAVPPAQQALRGIHSQLQQEQQLWANKLAQDPACFPSLEQEIHLRFGQLADQLVASLLAGAAVQPALDDAVKKKVTE
Ga0170834_1038046032	3300031057	Forest Soil	MFFRFGTKAGAAIPPTQQALQGIHSQLQQQQQLWADKLAHDPACFPSLEQEIHLRFGQLADQLVASLLAGAVREPALDEAAQKK
Ga0308189_104126071	3300031058	Soil	MVFRFGSKSGKAVPPAGQALEDIHSQLQQQQPLWTEKLAQDPSRFAALEHEVHLHFGQLADQFVASLLAGVANPPALHDAAKKK
Ga0307408_1014785752	3300031548	Rhizosphere	MFFRFGSKSGKAVPSAGQALKDIHSQLQQQQQLWTETLAQDPSCFAALEQEVHLRFGQLADQFVAGLLAGVANQPALQDAAKKK
Ga0310686_1037479322	3300031708	Soil	MFFRFGTKAGAAVPPAQQALRGIHSQLQQEQQLWANKLAQDPACFPSLEQEIHLRFGQLADQLVASLLAGAAEQPTLADAAKKK
Ga0310686_1039277372	3300031708	Soil	MFFRFGTKSGAIVPPTGQAVQDIHTQLQQQQQLWADKLAHDPACFAALEQEIHLRFGQLADQLVASLLAGAADQPALDEAAKKK
Ga0307477_106118542	3300031753	Hardwood Forest Soil	MFFRFRSKSGEAVPAAQQALQDIHSQLRRQQQLWAEKLAQDPACFATLEQEVHLRFGELADQLVASLLAGVASQPALQDAAKKK
Ga0306919_101702681	3300031879	Soil	SKSGEVVPPAQEALAAIQAQLQQQQQLWAQRLAQDPACFATLEQEVHLRFGQLADQLVASLLAGAAGQPALAQAAKKK
Ga0306921_106005842	3300031912	Soil	MFFRFGSKSGEGVPPAEQALPQIQSQLQQQQRLWAEKLAQDPSCFDALEEEVHLRFGRLADQLVASLLASVADHPALPDAAKKK
Ga0306922_103460382	3300032001	Soil	KSGEVVPPAQEALAAIQAQLQQQQQLWAQRLAQDPACFATLEQEVHLRFGQLADQLVASLLAGAAGQPALAQAAKKK
Ga0268251_102915162	3300032159	Agave	MFFRFGSKSGKAVPPAGQALEAIHFQLQQQQQLWTEKLAQDPSCFAALEQEVHLHFGQLADQFVAGLLTGVANQPALQDAAKKK
Ga0348332_127379632	3300032515	Plant Litter	MFFRFGTKSGATVPPAGQAVQDIHTQLQQQQQLWADQLARDPACFAALEQQIHLRFGQLADQLVASLLGGVAAQPALADAAKKK
Ga0348332_128811701	3300032515	Plant Litter	GRSMFFRFGSKSGTTVPPAEQAVADIHSELKQQQQLWADQLAQDPARFASLEQHIHLRFGQLADQLVASLLVDAAQQATLQDAAKKK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096171

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences