Metagenome Family F096237

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096237
Family Type	Metagenome
Number of Sequences	105
Average Sequence Length	47 residues
Representative Sequence	MMTFIATSNDEDLLTHEVSDEALEAAGGNEARNFTLAACTQDWGCAG
Number of Associated Samples	57
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	88.57 %
% of genes near scaffold ends (potentially truncated)	27.62 %
% of genes from short scaffolds (< 2000 bps)	82.86 %
Associated GOLD sequencing projects	52
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.19

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (54.286 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (21.905 % of family members)
Environment Ontology (ENVO)	Unclassified (37.143 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.619 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 9.33% β-sheet: 0.00% Coil/Unstructured: 90.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.19
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.19
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF09335	SNARE_assoc	2.86
PF04392	ABC_sub_bind	1.90
PF04909	Amidohydro_2	1.90
PF02550	AcetylCoA_hydro	1.90
PF01068	DNA_ligase_A_M	1.90
PF00072	Response_reg	0.95
PF13458	Peripla_BP_6	0.95
PF03795	YCII	0.95
PF12680	SnoaL_2	0.95
PF00571	CBS	0.95
PF01042	Ribonuc_L-PSP	0.95
PF16868	NMT1_3	0.95
PF11149	DUF2924	0.95
PF07045	DUF1330	0.95
PF05661	DUF808	0.95
PF03992	ABM	0.95
PF06577	EipA	0.95
PF13683	rve_3	0.95
PF00753	Lactamase_B	0.95
PF07883	Cupin_2	0.95
PF14525	AraC_binding_2	0.95
PF13442	Cytochrome_CBB3	0.95
PF03734	YkuD	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	2.86
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	2.86
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	2.86
COG0427	Propionyl CoA:succinate CoA transferase	Energy production and conversion [C]	1.90
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.90
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.90
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.90
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.95
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.95
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.95
COG2354	Membrane protein MutK/YedI, may be involved in DNA repair	Replication, recombination and repair [L]	0.95
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.95
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.29 %
All Organisms	root	All Organisms	45.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.29 %
cellular organisms	root	All Organisms → cellular organisms	45.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.29 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	45.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.29 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	38.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.29 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.67 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.29 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15.24 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	6.67 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.95 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.95 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.29 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.67 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.67 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	1.90 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.95 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.95 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.95 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.95 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.29 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.67 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.71 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	1.90 %
Ponticoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ponticoccus	0.95 %
Methylobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter	0.95 %
Beijerinckia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia	0.95 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.95 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.29 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.67 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.71 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1.90 %
Ponticoccus alexandrii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ponticoccus → Ponticoccus alexandrii	0.95 %
unclassified Beijerinckia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia	0.95 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.95 %
Methylobacter marinus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter → Methylobacter marinus	0.95 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.29 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.67 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.71 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1.90 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.95 %
Beijerinckia sp. 28-YEA-48	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. 28-YEA-48	0.95 %
Ponticoccus alexandrii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ponticoccus → Ponticoccus alexandrii	0.95 %
Methylobacter marinus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter → Methylobacter marinus	0.95 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig46942	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
2199352025\|deepsgr__Contig_51619	Not Available	561	Open in IMG/M
2228664022\|INPgaii200_c1190338	Not Available	809	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_10929648	Not Available	707	Open in IMG/M
3300000787\|JGI11643J11755_11773783	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300000956\|JGI10216J12902_101590720	Not Available	585	Open in IMG/M
3300001431\|F14TB_101619095	Not Available	1053	Open in IMG/M
3300003911\|JGI25405J52794_10026366	Not Available	1193	Open in IMG/M
3300003911\|JGI25405J52794_10161751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. 28-YEA-48	512	Open in IMG/M
3300004479\|Ga0062595_100601078	Not Available	857	Open in IMG/M
3300005332\|Ga0066388_100528555	All Organisms → cellular organisms → Bacteria → Proteobacteria	1812	Open in IMG/M
3300005332\|Ga0066388_100675740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1643	Open in IMG/M
3300005332\|Ga0066388_100892643	All Organisms → cellular organisms → Bacteria → Proteobacteria	1468	Open in IMG/M
3300005332\|Ga0066388_102844473	Not Available	884	Open in IMG/M
3300005332\|Ga0066388_104138238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	740	Open in IMG/M
3300005332\|Ga0066388_105812079	Not Available	624	Open in IMG/M
3300005332\|Ga0066388_108589868	Not Available	508	Open in IMG/M
3300005332\|Ga0066388_108636190	Not Available	506	Open in IMG/M
3300005456\|Ga0070678_100437484	Not Available	1143	Open in IMG/M
3300005457\|Ga0070662_101421600	Not Available	598	Open in IMG/M
3300005526\|Ga0073909_10466243	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	606	Open in IMG/M
3300005617\|Ga0068859_102432097	Not Available	577	Open in IMG/M
3300005713\|Ga0066905_100032703	All Organisms → cellular organisms → Bacteria → Proteobacteria	2974	Open in IMG/M
3300005713\|Ga0066905_100092617	All Organisms → cellular organisms → Bacteria	2025	Open in IMG/M
3300005713\|Ga0066905_100113387	All Organisms → cellular organisms → Bacteria → Proteobacteria	1873	Open in IMG/M
3300005713\|Ga0066905_100220156	All Organisms → cellular organisms → Bacteria → Proteobacteria	1435	Open in IMG/M
3300005713\|Ga0066905_100292960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1274	Open in IMG/M
3300005713\|Ga0066905_100468931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1039	Open in IMG/M
3300005713\|Ga0066905_100564707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	957	Open in IMG/M
3300005713\|Ga0066905_100609162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	925	Open in IMG/M
3300005713\|Ga0066905_100804899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	815	Open in IMG/M
3300005713\|Ga0066905_101054802	Not Available	719	Open in IMG/M
3300005713\|Ga0066905_101110586	Not Available	703	Open in IMG/M
3300005713\|Ga0066905_101180088	All Organisms → cellular organisms → Bacteria → Proteobacteria	683	Open in IMG/M
3300005713\|Ga0066905_101518649	Not Available	610	Open in IMG/M
3300005713\|Ga0066905_101708019	Not Available	578	Open in IMG/M
3300005713\|Ga0066905_101755113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	571	Open in IMG/M
3300005937\|Ga0081455_10084739	Not Available	2586	Open in IMG/M
3300005937\|Ga0081455_10095970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2392	Open in IMG/M
3300005983\|Ga0081540_1005062	All Organisms → cellular organisms → Bacteria → Proteobacteria	9893	Open in IMG/M
3300005983\|Ga0081540_1040461	Not Available	2429	Open in IMG/M
3300006049\|Ga0075417_10000979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7360	Open in IMG/M
3300006049\|Ga0075417_10033795	All Organisms → cellular organisms → Bacteria	2134	Open in IMG/M
3300006049\|Ga0075417_10056684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1706	Open in IMG/M
3300006049\|Ga0075417_10268835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	821	Open in IMG/M
3300006049\|Ga0075417_10381410	Not Available	695	Open in IMG/M
3300006058\|Ga0075432_10004247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4878	Open in IMG/M
3300006844\|Ga0075428_101087804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	845	Open in IMG/M
3300006844\|Ga0075428_102008943	Not Available	599	Open in IMG/M
3300006854\|Ga0075425_100426000	All Organisms → cellular organisms → Bacteria → Proteobacteria	1528	Open in IMG/M
3300006854\|Ga0075425_101528219	Not Available	753	Open in IMG/M
3300006854\|Ga0075425_101539288	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300006871\|Ga0075434_100605554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1115	Open in IMG/M
3300006871\|Ga0075434_101137375	Not Available	793	Open in IMG/M
3300009092\|Ga0105250_10511466	Not Available	546	Open in IMG/M
3300009094\|Ga0111539_10253956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2047	Open in IMG/M
3300009094\|Ga0111539_10833951	Not Available	1073	Open in IMG/M
3300009094\|Ga0111539_11544035	Not Available	770	Open in IMG/M
3300009101\|Ga0105247_10426264	Not Available	951	Open in IMG/M
3300009162\|Ga0075423_10156415	All Organisms → cellular organisms → Bacteria → Proteobacteria	2393	Open in IMG/M
3300009162\|Ga0075423_10797915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	999	Open in IMG/M
3300009545\|Ga0105237_10361802	Not Available	1455	Open in IMG/M
3300010043\|Ga0126380_10005745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5282	Open in IMG/M
3300010043\|Ga0126380_10013827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3703	Open in IMG/M
3300010043\|Ga0126380_10758077	Not Available	788	Open in IMG/M
3300010046\|Ga0126384_10481467	Not Available	1066	Open in IMG/M
3300010046\|Ga0126384_11733727	Not Available	591	Open in IMG/M
3300010047\|Ga0126382_10066980	All Organisms → cellular organisms → Bacteria	2183	Open in IMG/M
3300010047\|Ga0126382_10171747	Not Available	1510	Open in IMG/M
3300010047\|Ga0126382_10345938	Not Available	1137	Open in IMG/M
3300010047\|Ga0126382_10819627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	796	Open in IMG/M
3300010359\|Ga0126376_10994078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	838	Open in IMG/M
3300010359\|Ga0126376_12981140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	523	Open in IMG/M
3300010362\|Ga0126377_11085848	Not Available	869	Open in IMG/M
3300010362\|Ga0126377_12856795	Not Available	557	Open in IMG/M
3300010375\|Ga0105239_10381438	Not Available	1594	Open in IMG/M
3300010400\|Ga0134122_10838144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ponticoccus → Ponticoccus alexandrii	882	Open in IMG/M
3300011003\|Ga0138514_100100650	Not Available	626	Open in IMG/M
3300012480\|Ga0157346_1019632	Not Available	579	Open in IMG/M
3300012515\|Ga0157338_1077603	Not Available	531	Open in IMG/M
3300012948\|Ga0126375_10974699	Not Available	688	Open in IMG/M
3300012960\|Ga0164301_11478907	Not Available	558	Open in IMG/M
3300014968\|Ga0157379_10039114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4232	Open in IMG/M
3300015371\|Ga0132258_10321632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3813	Open in IMG/M
3300015372\|Ga0132256_100315696	Not Available	1650	Open in IMG/M
3300015373\|Ga0132257_100561558	Not Available	1407	Open in IMG/M
3300015373\|Ga0132257_102892526	Not Available	626	Open in IMG/M
3300015374\|Ga0132255_100436129	Not Available	1914	Open in IMG/M
3300015374\|Ga0132255_102065000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter → Methylobacter marinus	868	Open in IMG/M
3300018072\|Ga0184635_10342135	Not Available	577	Open in IMG/M
3300021560\|Ga0126371_11732705	Not Available	748	Open in IMG/M
3300025986\|Ga0207658_10779478	Not Available	867	Open in IMG/M
3300027873\|Ga0209814_10001125	All Organisms → cellular organisms → Bacteria → Proteobacteria	9315	Open in IMG/M
3300027873\|Ga0209814_10025972	All Organisms → cellular organisms → Bacteria	2397	Open in IMG/M
3300027873\|Ga0209814_10094810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1264	Open in IMG/M
3300027880\|Ga0209481_10583961	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300028379\|Ga0268266_11756997	Not Available	595	Open in IMG/M
3300028589\|Ga0247818_11119854	Not Available	560	Open in IMG/M
3300028814\|Ga0307302_10528310	Not Available	586	Open in IMG/M
3300031538\|Ga0310888_10710153	Not Available	617	Open in IMG/M
3300031847\|Ga0310907_10084921	Not Available	1328	Open in IMG/M
3300031847\|Ga0310907_10740285	Not Available	546	Open in IMG/M
3300031854\|Ga0310904_11395592	Not Available	510	Open in IMG/M
3300032122\|Ga0310895_10545451	Not Available	588	Open in IMG/M
3300032205\|Ga0307472_101185446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	728	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	55.24%
Host-Associated	Host-Associated	43.81%
Engineered	Engineered	0.95%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.29%
Plants	Host-Associated → Plants	43.81%
Aquatic	Environmental → Aquatic	0.95%
Modeled	Engineered → Modeled	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	29.52%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.29%
Sediment	Environmental → Aquatic → Sediment	0.95%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.95%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.71%
Loam	Environmental → Terrestrial → Soil → Loam	22.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.76%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.95%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.95%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.95%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	21.90%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.05%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.57%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.95%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.95%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.95%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.95%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	21.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	20.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.71%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	5.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.95%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.95%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.95%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.95%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.95%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300012480	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.yng.040610	Host-Associated	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0942.00003300	2166559005	Simulated	MMTSNEEDLLTHEVSDEALEAAGGNAARNFTMAACTYHVGCAG
deepsgr_00572290	2199352025	Soil	NEEDLLTHEVSDEALEAAGAYEVAANFTLAACTNMWHCAA
INPgaii200_11903383	2228664022	Soil	MMTFHTTSNEEDFLIHEVSDEALEAAGGNEVAARYTLANCTGLSECPG
ICChiseqgaiiFebDRAFT_109296482	3300000363	Soil	MITFVTTSNDEDLLIHEVSDEALEAARGQDIGASYTLANCTGLSECPA*
JGI11643J11755_117737832	3300000787	Soil	MMTFHTTSNEEDFLIHEVSDEALEAAGGNEVAARYTLANCTGLSECPG*
JGI10216J12902_1015907201	3300000956	Soil	MMTFLAEEDLPACEVSDEALEAAGANEVVRNYTLAACT
F14TB_1016190952	3300001431	Soil	MITFVTTSNDEDLLIHEVSDEALEAARGQDIGASYPLANCTGLSECPA*
JGI25405J52794_100263663	3300003911	Tabebuia Heterophylla Rhizosphere	MDRLLDKNIVSNEEDLLTHEVSDEALEAAGAYEVAANFTLAACTNNWYCAA*
JGI25405J52794_101617512	3300003911	Tabebuia Heterophylla Rhizosphere	MMTFVETSNEEDLLTHEVSDEALEAAGAYEVAANFTLAACTNMWYCAA*
Ga0062595_1006010782	3300004479	Soil	MMTLIATSNKEEHLLTHEVSDEALEAAGGNEARNYSLATCTYCFGCVPAISN*
Ga0066388_1005285552	3300005332	Tropical Forest Soil	MMTFIATSNDEDLLTHEVSDESLEAAGGNEARNEARNFTLAACTQDWGCAG*
Ga0066388_1006757403	3300005332	Tropical Forest Soil	MMTFLATSNEEDLLTHEVSDEALEAAGANEVAANFSLAGCTNMWYCAA*
Ga0066388_1008926432	3300005332	Tropical Forest Soil	MMTFIATSNEEDLLAHEVSDEALEAAGGNEATNFTMAACTFHIGCAG*
Ga0066388_1028444733	3300005332	Tropical Forest Soil	MTFLAPSNEEDLLTHEVSDEALERAGGNEEAGNYTLANCTGLSECPG*
Ga0066388_1041382381	3300005332	Tropical Forest Soil	MMTFIATSNEEDLLTHEVSDEALEAAGGNQAPNFTMAACTFHVGCAG*
Ga0066388_1058120792	3300005332	Tropical Forest Soil	MITFLAISNEEDLLTHEVSDEALEAAGGNNEVAGNYTLAACTGLSVCPG*
Ga0066388_1085898681	3300005332	Tropical Forest Soil	MITLLATSNEEDLLTHDVSDEALEAAGGNEVVGNFTLGNCTGLSVCPG*
Ga0066388_1086361902	3300005332	Tropical Forest Soil	MMTFLATSNEEDLLTHELSDEALERAGGNEVARNYTLANCTGLSECPG*
Ga0070678_1004374842	3300005456	Miscanthus Rhizosphere	MMTFIATSNDEDLLTHEVSDEALEAAGGNEARNFTLAACTQDWGCAG*
Ga0070662_1014216002	3300005457	Corn Rhizosphere	MMTFIATSNDEDLLTHEVSDEALEAAGGNEARNFTLAACT
Ga0073909_104662432	3300005526	Surface Soil	MMTFIATSNDEELLTHEVSDEALEAAGGNEARNFTLAACT
Ga0068859_1024320972	3300005617	Switchgrass Rhizosphere	MMTFIATSNDEELLTHEVSDEALEAAGGNEARNFTLAACTQDWGCAG*
Ga0066905_1000327035	3300005713	Tropical Forest Soil	MMTFLATLSEEDLLTHEVSDEALEAAGGIEAAGNYTLAACTGLSVCPG*
Ga0066905_1000926172	3300005713	Tropical Forest Soil	MTFLATSNEEDLLTHEVSDEALERAGGNEEAGNYTLANCTGLSECPG*
Ga0066905_1001133875	3300005713	Tropical Forest Soil	MMTFPAISLEEDLLIREVSDEALEAAGGNDVAENYTLADCTGLSVCPA*
Ga0066905_1002201562	3300005713	Tropical Forest Soil	MMTFIDTSNEEDLLTHEVSDEALEAAGVYEVAAKFTLAACTNMWYCAA*
Ga0066905_1002929602	3300005713	Tropical Forest Soil	MMTFIATSNDEDLLTHEVSDESLEAAGGNEARNFTLAACTQDWGCAG*
Ga0066905_1004689312	3300005713	Tropical Forest Soil	MMTFIVTSNEEDLLTHEVSDEALEAAGANNKVAGNFSLAGCTLQWYCSA*
Ga0066905_1005647072	3300005713	Tropical Forest Soil	MILFIDTPNEEDFLTHEVSDEALEAAGGNEATNFTMAACTFHVGCAG*
Ga0066905_1006091621	3300005713	Tropical Forest Soil	MITLLATSNEDDLLTHDVSDEALEAAGGNEVVGNFTLGNCTGLSVCPG*
Ga0066905_1008048992	3300005713	Tropical Forest Soil	MMTFIATSNEEDLLTHEVSDEALEAAGGNEATNFTMAACTFHVGCAG*
Ga0066905_1010548021	3300005713	Tropical Forest Soil	TFIDTSNEEDLLTHEVSDEALEAAGAYEVAANFSLAGCTNMWHCAA*
Ga0066905_1011105861	3300005713	Tropical Forest Soil	MITFLTTSSEEETLTCDVSDEALESAGANGGAANYTLANCTGLSECPG*
Ga0066905_1011800881	3300005713	Tropical Forest Soil	MMTFLGTSNEEDLLTHEVPDEALERAGGNEVAGNYTLANCTGLSECPG*
Ga0066905_1015186491	3300005713	Tropical Forest Soil	MMTFIDTSNEEDLLTHEVSDEALEAAGAYEVAAKFTLAACTNMWYCAA*
Ga0066905_1017080191	3300005713	Tropical Forest Soil	MMTFLYDFLATSNEEDLFTREVSDEVLEAAGANEVAGNFTLAACTNMWYCA
Ga0066905_1017551131	3300005713	Tropical Forest Soil	MTFIDTSNEEDLLTHEVSDEALEAAGAYEVTANFTLAACTNNWYCAA*
Ga0081455_100847394	3300005937	Tabebuia Heterophylla Rhizosphere	MMTFLVSSNEEDLLIHEVSDEALEAAGANEVAANFTLAACTNMWYCAA*
Ga0081455_100959703	3300005937	Tabebuia Heterophylla Rhizosphere	MMTFIDTSNDEDLLTHEVSDEALEAAGAYEVAANFTLAACTNMWYCAA*
Ga0081540_10050624	3300005983	Tabebuia Heterophylla Rhizosphere	MMTFIATSNEEELLTHEVSDEALEAAGGNEVTNFTMAACTFHVGCAG*
Ga0081540_10404613	3300005983	Tabebuia Heterophylla Rhizosphere	MMTFLATSNEEDLLTHEVSDEALEAAGANEVAANFTLAACTNMWYCAA*
Ga0075417_100009794	3300006049	Populus Rhizosphere	MMTFHTTSNEEDFLIHELSDEALEAAGGNEVAARYTLANCTGLSECPG*
Ga0075417_100337952	3300006049	Populus Rhizosphere	MMTFLATSNKEDLLIHEVSDEALEAAGGNEVAARYTLANCTGLSECPG*
Ga0075417_100566844	3300006049	Populus Rhizosphere	MTFIDTSNEEDLLTHEVSDETLEAAGGNEARNFSMSTCTYYFGCAG*
Ga0075417_102688351	3300006049	Populus Rhizosphere	MMTFIATSKEEDLLTHEVSDEALEAAGGNEARNFTMAACTFHVGCAG*
Ga0075417_103814103	3300006049	Populus Rhizosphere	MMTFLAVSSEEDLLTHEVSDEALEAAGGGDAAGNYTLAACTGLS
Ga0075432_100042475	3300006058	Populus Rhizosphere	MMTFPATSREEDLLIREVSDEALEAAGGNDAAGNYTLADCTGLSVCPA*
Ga0075428_1010878042	3300006844	Populus Rhizosphere	MMTFIATPNKEEDLLTHEVSDEALEAAGGNEARNYSLATCTYCFGCVPAISN*
Ga0075428_1020089431	3300006844	Populus Rhizosphere	MSTFLATSNEEDLLIHEVSDEALEAASGNEVAARYTLANCTGLSECPG*
Ga0075425_1004260004	3300006854	Populus Rhizosphere	MTFIDTSNEEDLLTHEVLDETLEAAGGNEARNFSMSTCTYYFGCAG*
Ga0075425_1015282191	3300006854	Populus Rhizosphere	MMTFLATSNKEDLLIHEVSDEALEAAGGNEVAARYTLANC
Ga0075425_1015392882	3300006854	Populus Rhizosphere	MTFLATSNKEDLLIHEVSDEALEAAGGNEVAARYTLANCTGLSECPG*
Ga0075434_1006055541	3300006871	Populus Rhizosphere	EEDLLTHEVSDEALEAAGGNEARNFTMAACTFHVGCAG*
Ga0075434_1011373752	3300006871	Populus Rhizosphere	MMTSIATSNDEDLLTHEVSDEALEAAGGNEARNFTLAACTQDWGCAG*
Ga0105250_105114662	3300009092	Switchgrass Rhizosphere	MMTFIATSNDEELLTHEVSDEALEAAGGNEARNFTLAACTHDWGCAG*
Ga0111539_102539562	3300009094	Populus Rhizosphere	MMTFLATSNKEDLLIHEVSDEALEAAGGSEVAARYTLANCTGLSECPG*
Ga0111539_108339511	3300009094	Populus Rhizosphere	NEEDLLTHEVSDEALEAAGGNEAGNFTMAACTFHVGCAG*
Ga0111539_115440351	3300009094	Populus Rhizosphere	MMTFLATSNEEDLLTHEVSDEALERAGGNEIAGNYTLANCT
Ga0105247_104262642	3300009101	Switchgrass Rhizosphere	MVTKMMTFIATSNDEDLLTHEVSDEALEAAGGNEARNFTLAACTQDWGCAG*
Ga0075423_101564156	3300009162	Populus Rhizosphere	MMTFIATPNKEEDLLTHEVSDEALEAAGGNEARNYSL
Ga0075423_107979152	3300009162	Populus Rhizosphere	MMTFIATSKEEDLLTHEVSDEALEAAGGNEARKFTMAACTFHVGCAG*
Ga0105237_103618021	3300009545	Corn Rhizosphere	EMVTIMMTFIATSNDEELLTHEVSDEALEAAGGNEARNFTLAACTHDWGCAG*
Ga0126380_100057457	3300010043	Tropical Forest Soil	MMTFPAISLEEELLIREVSDEALEAAGGNDVAGNYTLADCTGLSVCPA*
Ga0126380_100138274	3300010043	Tropical Forest Soil	MMTFIETSNEEDLLTHEVSDEALEAAGAYEVAANFTLAACTNMWYCAA*
Ga0126380_107580772	3300010043	Tropical Forest Soil	VTMMTFIATSNEEDLLTHEVSDEALEAAGGNEATNFTMAACTFHVGCAG*
Ga0126384_104814671	3300010046	Tropical Forest Soil	MVTMMTFIATSNDEDLLTHEVSDESLEAAGGNEARNFTLAACTQDWGCAG*
Ga0126384_117337271	3300010046	Tropical Forest Soil	MTFLATSNEEDLLTHEVSDEALERAGGNEVGGNYTLANCTGLSECPG*
Ga0126382_100669803	3300010047	Tropical Forest Soil	MMTFLGTSNEEGLPTHEVPDEALERAGGNEVAGNYTLANCTGLSECPG*
Ga0126382_101717471	3300010047	Tropical Forest Soil	MMTFIATSNEEDLLTHEVSDEALEAAGGNEATNFTMAACTFH
Ga0126382_103459381	3300010047	Tropical Forest Soil	MVTMMTFIATSNEEDLLTHEVSDEALEAAGGNEATNFTMAACTFHVGCAG*
Ga0126382_108196272	3300010047	Tropical Forest Soil	MVTMMTFIATSNEEDVLIHEVSDEALEAAGGNEATNFTMAACTFHVGCAG*
Ga0126376_109940782	3300010359	Tropical Forest Soil	MTFIDTSNEEDLLTHEVSDEALEAAGAYEVAAKFTLAACTNMWYCAA*
Ga0126376_129811401	3300010359	Tropical Forest Soil	MVTMMTFIATSNEEDVLIHEVSDEALEAAGGNEATNFTMAACTFH
Ga0126377_110858482	3300010362	Tropical Forest Soil	MVTMMTFIVTSNEEDLLTHEVSDEALEAAGANNKVAGNFSLAGCTLQWYCSA*
Ga0126377_128567951	3300010362	Tropical Forest Soil	MTFLATSNEEDLLTHEVSDEALERAGGNEVAGNYTLANCTGLSECPG*
Ga0105239_103814384	3300010375	Corn Rhizosphere	MVTKMMTFIATSNDEDLLTHEVSDEALEAAGGNEARNFTLAACTHDWGCAG*
Ga0134122_108381442	3300010400	Terrestrial Soil	MVTKMMTSIATSNDEDLLTHEVSDEALEAAGGNEARNFTLAACTQDWGCAG*
Ga0138514_1001006502	3300011003	Soil	MMTFLHTSNEEDLLTHEVSDEALEAAGAYEVAANFTLAACTNMWHCAA*
Ga0157346_10196322	3300012480	Arabidopsis Rhizosphere	MVTKMMTSIATSNDEDLLTHEVSDEALEAAGGNEARNFTLA
Ga0157338_10776031	3300012515	Arabidopsis Rhizosphere	MVTKMMTSIAASNDEDLLTHEVSDEALEAAGGNEARNFTLAACTHDWGCAG*
Ga0126375_109746991	3300012948	Tropical Forest Soil	MMTFIETSNEEDLLTHEVSDEALEAAGAYEVAAKFTLAACTNMWYCAA*
Ga0164301_114789071	3300012960	Soil	MVTKMMTSIATSNDEDLLTHEVSDEALEAAGGNEARNFTLAACTQD*
Ga0157379_100391145	3300014968	Switchgrass Rhizosphere	FIATSNDEDLLTHEVSDEALEAAGGNEARNFTLAACTHDWGCAG*
Ga0132258_103216324	3300015371	Arabidopsis Rhizosphere	MVTKMMTFIATSNDEDLLTHEVSDEALEAAGGNEARNFTLAA
Ga0132256_1003156962	3300015372	Arabidopsis Rhizosphere	MVTKMMTSIATSNDEDLLTHEVSDEALEAAGGNEARNFTLAACTHDWGCAG*
Ga0132257_1005615582	3300015373	Arabidopsis Rhizosphere	MVTKMMTSIAASNDEDLLTHEVSDEALEAAGGNEARNFTLAACTQ
Ga0132257_1028925262	3300015373	Arabidopsis Rhizosphere	SNDEDLLTHEVSDEALEAAGGNEARNFTLAACTQDWGCAG*
Ga0132255_1004361293	3300015374	Arabidopsis Rhizosphere	MVTKMMTSIAASNDEDLLTHEVSDEALEAAGGNEARNFTLAACTQDWGCAG*
Ga0132255_1020650001	3300015374	Arabidopsis Rhizosphere	MMTSNEEDLLTHEISDEALEAAGGNAARNFTMAACTYHVGCAG*
Ga0184635_103421351	3300018072	Groundwater Sediment	MMTFIDTSNEEDLLTHEVSDEALEAAGAYEVAANFTLAACTNMWHCAA
Ga0126371_117327052	3300021560	Tropical Forest Soil	MVTMMTFIPTSNDEDLLTHEVSDESLEAAGRNEARNFTLAACTQDWGCAG
Ga0207658_107794781	3300025986	Switchgrass Rhizosphere	MVTKIMTFIATSNDEDLLTHEVSDEALEAAGGNEARNFTLAACTHDWGCAG
Ga0209814_100011254	3300027873	Populus Rhizosphere	MMTFHTTSNEEDFLIHELSDEALEAAGGNEVAARYTLANCTGLSECPG
Ga0209814_100259723	3300027873	Populus Rhizosphere	MMTFLATSNKEDLLIHEVSDEALEAAGGNEVAARYTLANCTGLSECPG
Ga0209814_100948101	3300027873	Populus Rhizosphere	MTFIDTSNEEDLLTHEVSDETLEAAGGNEARNFSMSTCTYYFGCAG
Ga0209481_105839611	3300027880	Populus Rhizosphere	MMTFIATSKEEDLLTHEVSDEALEAAGGNEARNFTMAACTFHVGCAG
Ga0268266_117569971	3300028379	Switchgrass Rhizosphere	MVTKMMTFIATSNDEDLLTHEVSDEALEAAGGNEARNFTLAACTHDWGCAG
Ga0247818_111198542	3300028589	Soil	MTFPATSRDEDLLIREVPDEALEAAGGNDVAGSYTLANCTG
Ga0307302_105283101	3300028814	Soil	AFLATPNEEDLLTHEVSDEALERAGGNEVAGNYTLANCTGLSVCPG
Ga0310888_107101531	3300031538	Soil	MMTFIATSNDEELLTHEVSDEALEAAGGNEARNFTLAACTHDWGCAG
Ga0310907_100849212	3300031847	Soil	MVTKMMTSIATSNDEDLLTHEVSDEALEAAGGNEARNFTLAACTQDWGCAG
Ga0310907_107402851	3300031847	Soil	MMTFIATSNDEDLLTHEVSDEALEAAGGNEARNFTLAACTQ
Ga0310904_113955921	3300031854	Soil	SNDEDLLTHEVSDEALEAAGGNEARNFTLAACTQDWGCAG
Ga0310895_105454511	3300032122	Soil	IMMTFIATSNDEELLTHEVSDEALEAAGGNEARNFTLAACTQDWGCAG
Ga0307472_1011854462	3300032205	Hardwood Forest Soil	MMTFIATSNDEELLTHEVSDEALEAAGGNEARNFTL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F096237

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences