Metagenome Family F096310

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F096310
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	41 residues
Representative Sequence	MSKLVTLILRPIYSHKKQIKIDYETQFLTDPMLNDKIEKKIN
Number of Associated Samples	15
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	69.90 %
% of genes near scaffold ends (potentially truncated)	17.31 %
% of genes from short scaffolds (< 2000 bps)	37.50 %
Associated GOLD sequencing projects	15
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (70.192 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza (84.615 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (66.346 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.71% β-sheet: 0.00% Coil/Unstructured: 44.29%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF01842	ACT	1.92
PF04885	Stig1	1.92
PF03152	UFD1	0.96
PF04116	FA_hydroxylase	0.96
PF02535	Zip	0.96
PF00847	AP2	0.96
PF00078	RVT_1	0.96
PF13963	Transpos_assoc	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0428	Zinc transporter ZupT	Inorganic ion transport and metabolism [P]	0.96
COG3000	Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily	Lipid transport and metabolism [I]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.19 %
All Organisms	root	All Organisms	29.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.19 %
cellular organisms	root	All Organisms → cellular organisms	28.85 %
Viruses	superkingdom	All Organisms → Viruses	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.19 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	28.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.19 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	23.08 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.19 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	23.08 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.19 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	21.15 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.19 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	21.15 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.19 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	11.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.19 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	11.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.19 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	11.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.19 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	11.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.19 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	9.62 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.19 %
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	9.62 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.19 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	9.62 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.19 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	9.62 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.19 %
rosids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids	9.62 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.19 %
fabids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids	9.62 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.19 %
Malpighiales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales	9.62 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.19 %
Salicaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae	9.62 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.19 %
Saliceae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae	8.65 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.19 %
Populus	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus	6.73 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.19 %
Populus trichocarpa	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa	3.85 %
Populus alba	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus alba	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300028786\|Ga0307517_10008442	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	14780	Open in IMG/M
3300028786\|Ga0307517_10009711	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	13600	Open in IMG/M
3300028786\|Ga0307517_10013984	Not Available	10833	Open in IMG/M
3300028786\|Ga0307517_10029420	All Organisms → cellular organisms → Eukaryota	6487	Open in IMG/M
3300028786\|Ga0307517_10035103	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	5687	Open in IMG/M
3300028786\|Ga0307517_10043780	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	4756	Open in IMG/M
3300028786\|Ga0307517_10044827	Not Available	4665	Open in IMG/M
3300028786\|Ga0307517_10046881	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus alba	4495	Open in IMG/M
3300028786\|Ga0307517_10053095	Not Available	4044	Open in IMG/M
3300028786\|Ga0307517_10056122	Not Available	3849	Open in IMG/M
3300028786\|Ga0307517_10091775	Not Available	2477	Open in IMG/M
3300028786\|Ga0307517_10109060	Not Available	2120	Open in IMG/M
3300028786\|Ga0307517_10119334	Not Available	1958	Open in IMG/M
3300028786\|Ga0307517_10138139	Not Available	1723	Open in IMG/M
3300028786\|Ga0307517_10158866	Not Available	1524	Open in IMG/M
3300028786\|Ga0307517_10168462	Not Available	1447	Open in IMG/M
3300028786\|Ga0307517_10179924	Not Available	1367	Open in IMG/M
3300028786\|Ga0307517_10227744	Not Available	1123	Open in IMG/M
3300028786\|Ga0307517_10248770	Not Available	1045	Open in IMG/M
3300028794\|Ga0307515_10032872	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus	8568	Open in IMG/M
3300028794\|Ga0307515_10045203	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae	6772	Open in IMG/M
3300028794\|Ga0307515_10046670	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	6614	Open in IMG/M
3300028794\|Ga0307515_10067098	Not Available	4954	Open in IMG/M
3300028794\|Ga0307515_10072622	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa	4638	Open in IMG/M
3300028794\|Ga0307515_10077997	Not Available	4365	Open in IMG/M
3300028794\|Ga0307515_10087096	Not Available	3970	Open in IMG/M
3300028794\|Ga0307515_10093777	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	3717	Open in IMG/M
3300028794\|Ga0307515_10138358	Not Available	2629	Open in IMG/M
3300028794\|Ga0307515_10142752	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus	2557	Open in IMG/M
3300028794\|Ga0307515_10144464	Not Available	2529	Open in IMG/M
3300028794\|Ga0307515_10171116	Not Available	2164	Open in IMG/M
3300028794\|Ga0307515_10194099	Not Available	1929	Open in IMG/M
3300028794\|Ga0307515_10216393	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa	1745	Open in IMG/M
3300028794\|Ga0307515_10223883	Not Available	1691	Open in IMG/M
3300028794\|Ga0307515_10845178	Not Available	541	Open in IMG/M
3300030521\|Ga0307511_10047039	Not Available	3537	Open in IMG/M
3300030521\|Ga0307511_10100965	Not Available	1895	Open in IMG/M
3300030521\|Ga0307511_10108347	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa	1783	Open in IMG/M
3300030521\|Ga0307511_10110066	Not Available	1757	Open in IMG/M
3300030521\|Ga0307511_10133204	Not Available	1489	Open in IMG/M
3300030521\|Ga0307511_10341603	Not Available	649	Open in IMG/M
3300030521\|Ga0307511_10383499	Not Available	586	Open in IMG/M
3300030522\|Ga0307512_10177844	Not Available	1203	Open in IMG/M
3300030522\|Ga0307512_10206565	Not Available	1052	Open in IMG/M
3300030522\|Ga0307512_10290903	Not Available	771	Open in IMG/M
3300031456\|Ga0307513_10009746	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	12132	Open in IMG/M
3300031456\|Ga0307513_10039911	Not Available	5197	Open in IMG/M
3300031456\|Ga0307513_10042796	Not Available	4981	Open in IMG/M
3300031456\|Ga0307513_10065382	Not Available	3826	Open in IMG/M
3300031456\|Ga0307513_10085112	Not Available	3245	Open in IMG/M
3300031456\|Ga0307513_10142885	All Organisms → cellular organisms → Eukaryota	2316	Open in IMG/M
3300031456\|Ga0307513_10189041	Not Available	1913	Open in IMG/M
3300031456\|Ga0307513_10228631	Not Available	1674	Open in IMG/M
3300031456\|Ga0307513_10233525	Not Available	1650	Open in IMG/M
3300031456\|Ga0307513_10238336	Not Available	1626	Open in IMG/M
3300031456\|Ga0307513_10483691	Not Available	957	Open in IMG/M
3300031456\|Ga0307513_10768850	Not Available	669	Open in IMG/M
3300031507\|Ga0307509_10091132	All Organisms → cellular organisms → Eukaryota	3121	Open in IMG/M
3300031507\|Ga0307509_10129665	Not Available	2480	Open in IMG/M
3300031507\|Ga0307509_10155415	Not Available	2194	Open in IMG/M
3300031507\|Ga0307509_10210254	All Organisms → Viruses → Predicted Viral	1771	Open in IMG/M
3300031507\|Ga0307509_10255026	Not Available	1534	Open in IMG/M
3300031507\|Ga0307509_10810938	Not Available	600	Open in IMG/M
3300031616\|Ga0307508_10029239	Not Available	4983	Open in IMG/M
3300031616\|Ga0307508_10036227	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	4443	Open in IMG/M
3300031616\|Ga0307508_10123507	All Organisms → cellular organisms → Eukaryota	2191	Open in IMG/M
3300031616\|Ga0307508_10679259	Not Available	637	Open in IMG/M
3300031649\|Ga0307514_10034028	All Organisms → cellular organisms → Eukaryota	4061	Open in IMG/M
3300031649\|Ga0307514_10043012	Not Available	3549	Open in IMG/M
3300031649\|Ga0307514_10138216	Not Available	1662	Open in IMG/M
3300031730\|Ga0307516_10087605	Not Available	2947	Open in IMG/M
3300031730\|Ga0307516_10093171	Not Available	2838	Open in IMG/M
3300031730\|Ga0307516_10102873	Not Available	2670	Open in IMG/M
3300031730\|Ga0307516_10106094	Not Available	2620	Open in IMG/M
3300031730\|Ga0307516_10221757	Not Available	1599	Open in IMG/M
3300031730\|Ga0307516_10430733	Not Available	976	Open in IMG/M
3300031730\|Ga0307516_10549665	Not Available	808	Open in IMG/M
3300031838\|Ga0307518_10029934	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	3941	Open in IMG/M
3300031838\|Ga0307518_10042444	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa	3310	Open in IMG/M
3300031838\|Ga0307518_10080466	Not Available	2352	Open in IMG/M
3300031838\|Ga0307518_10172531	Not Available	1472	Open in IMG/M
3300032354\|Ga0325403_1015952	Not Available	6983	Open in IMG/M
3300032354\|Ga0325403_1017324	Not Available	6658	Open in IMG/M
3300032354\|Ga0325403_1020562	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	5964	Open in IMG/M
3300032354\|Ga0325403_1034702	Not Available	4079	Open in IMG/M
3300032354\|Ga0325403_1044826	Not Available	3263	Open in IMG/M
3300032354\|Ga0325403_1045440	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	3221	Open in IMG/M
3300032354\|Ga0325403_1066305	Not Available	2136	Open in IMG/M
3300032355\|Ga0325401_1002936	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae	15388	Open in IMG/M
3300032355\|Ga0325401_1003897	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	13865	Open in IMG/M
3300032355\|Ga0325401_1089038	Not Available	1803	Open in IMG/M
3300032389\|Ga0325405_1002476	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	18997	Open in IMG/M
3300032389\|Ga0325405_1017213	Not Available	6537	Open in IMG/M
3300032389\|Ga0325405_1025302	Not Available	4898	Open in IMG/M
3300032389\|Ga0325405_1038115	Not Available	3392	Open in IMG/M
3300032389\|Ga0325405_1040384	All Organisms → cellular organisms → Eukaryota	3196	Open in IMG/M
3300032389\|Ga0325405_1053920	Not Available	2305	Open in IMG/M
3300033179\|Ga0307507_10559193	Not Available	601	Open in IMG/M
3300033180\|Ga0307510_10054142	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	4208	Open in IMG/M
3300033180\|Ga0307510_10076180	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae	3301	Open in IMG/M
3300033180\|Ga0307510_10094258	Not Available	2820	Open in IMG/M
3300033180\|Ga0307510_10171293	Not Available	1749	Open in IMG/M
3300033180\|Ga0307510_10456723	Not Available	718	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	100.00%

Habitat	Taxonomy	Distribution
Roots	Host-Associated → Plants → Roots	84.62%
Wood	Host-Associated → Plants → Wood	15.38%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Roots → Unclassified	84.62%
Unclassified	Host-Associated → Plants → Wood → Unclassified	15.38%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	84.62%
Unclassified	Host-Associated → Plants → Wood → Unclassified → Unclassified	15.38%

Habitat	Taxonomy	Distribution
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	84.62%
Xylem	Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem	15.38%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300028786	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM	Host-Associated	Open in IMG/M
3300028794	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM	Host-Associated	Open in IMG/M
3300030521	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM	Host-Associated	Open in IMG/M
3300030522	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM	Host-Associated	Open in IMG/M
3300031456	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM	Host-Associated	Open in IMG/M
3300031507	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM	Host-Associated	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031649	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM	Host-Associated	Open in IMG/M
3300031730	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM	Host-Associated	Open in IMG/M
3300031838	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM	Host-Associated	Open in IMG/M
3300032354	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4	Host-Associated	Open in IMG/M
3300032355	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2	Host-Associated	Open in IMG/M
3300032389	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2	Host-Associated	Open in IMG/M
3300033179	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM	Host-Associated	Open in IMG/M
3300033180	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0307517_1000844213	3300028786	Ectomycorrhiza	MTLIVRPRYSYKKQIKINYEIQFPTDPMLNDKIEKKSIK
Ga0307517_1000971111	3300028786	Ectomycorrhiza	MPKLLTLILRLRYSNKKQIKIDYKTQFPTNPMLNDKIKKN
Ga0307517_100139842	3300028786	Ectomycorrhiza	MSKPVTLIIRLRYSLEKQIKIMNEAQFPTDPMLNDKI
Ga0307517_100294203	3300028786	Ectomycorrhiza	MSKLVTLILRPIYSHKKQIKIDYETQFLTDPMLNDKIEKKSIK
Ga0307517_100351034	3300028786	Ectomycorrhiza	MPKHLTLILKSRYSPKKQIKINYKAQFSIDPMLNDKIKNKIN
Ga0307517_100437803	3300028786	Ectomycorrhiza	MSKPITLILRQIYSHKKQIKIDYETQFSTDPMLNDTILKKSIK
Ga0307517_100448273	3300028786	Ectomycorrhiza	MVKIPKLMTLIARLRYSNKKQIKTYYKTQFSTDPVLNDKIF
Ga0307517_100468812	3300028786	Ectomycorrhiza	MTLILRPKYSHKKQIKIDYETQFLTDLMLNDKIEKKSIK
Ga0307517_100530952	3300028786	Ectomycorrhiza	MPKPVTLILSPEYSHKKQIKIYYEVQFPTDRMLNDKIEKK
Ga0307517_100561221	3300028786	Ectomycorrhiza	MLKLVTLILRPIYSHKKQIKIDYEAQFPTNPMLNNKIKKKIN
Ga0307517_100917751	3300028786	Ectomycorrhiza	MLKPVILIVRQKYFYKKQIKTDYETQFPTDPMLNDKIEKKIN
Ga0307517_101090601	3300028786	Ectomycorrhiza	MSKLVTLILRPRYSYKKQTKIDYETQFPTDSMFNDRIEKKSIK
Ga0307517_101193342	3300028786	Ectomycorrhiza	MVKMLKLVTLIVRQRYSYKNQIKIDYEAQFPTDLMLNDKIKNKIN
Ga0307517_101381391	3300028786	Ectomycorrhiza	MPKLVTMILKPRYSPKKQIKIDYETQFSTNPILNDKIGKKSIK
Ga0307517_101588661	3300028786	Ectomycorrhiza	MSKLVTLIVRPKYSHKKQIKTNYETQFSTDLILNDKIEKKIN
Ga0307517_101684621	3300028786	Ectomycorrhiza	MPKLMTLILKPRYSHKKQIKIDYEAQFPTDPMLNDKIK
Ga0307517_101799241	3300028786	Ectomycorrhiza	MPKPAALIMRSRYPYRKQIKIDYETQFPTDPMLND
Ga0307517_102277442	3300028786	Ectomycorrhiza	MIXFKQGXMPKPVTMILKPRYSPKKQIKIDYETQFPTDPMLNDKIEKKIN
Ga0307517_102487701	3300028786	Ectomycorrhiza	VKMPKSMTLILRPRYSHKKQIKTDYEAQFPTDPMLNDKIK
Ga0307515_100328729	3300028794	Ectomycorrhiza	MIXFKQGXMPKPVTMILKPRYSPKKQIKIDYETQFSTDPMLNDKIGKKSIK
Ga0307515_100452034	3300028794	Ectomycorrhiza	MSKLVTLIVRPIYSHKKHIQMDYEAQFSTDPMVNDKTLLQYIFC
Ga0307515_100466708	3300028794	Ectomycorrhiza	MPKLVTLILKPRYSHKKQIKIDYEAQFSTDPMLNDKIK
Ga0307515_100670982	3300028794	Ectomycorrhiza	MVKIPKLMTLIARLKYSNKKQIKTYYKTQFSTNPVLNDKILKKIN
Ga0307515_100726224	3300028794	Ectomycorrhiza	MSKLVTLILRPKYSHKKQIKTNYETQFSTDLILNDKLKKIN
Ga0307515_100779971	3300028794	Ectomycorrhiza	MSKLVTLIVRPKYSNKKQIKTDYKAQFPTDPMLNDKIKKQIN
Ga0307515_100870963	3300028794	Ectomycorrhiza	MSKLVTLILKPRYSYKKQIKIDYETQFPTDSMFNDRIEKKIN
Ga0307515_100937771	3300028794	Ectomycorrhiza	MSKPVTLILRQIYSHKKQIKIDYETQFSTDPMLNDTILKKSIK
Ga0307515_101383582	3300028794	Ectomycorrhiza	MPKLVTLILRPRYSYKKQIKIDYETQFPTDQILNDKIKKKTSIK
Ga0307515_101427521	3300028794	Ectomycorrhiza	MTMILKPRYSPKKQIKIDYETQFPTDPMLNDKIGKKIN
Ga0307515_101444641	3300028794	Ectomycorrhiza	MPKLVTLILKPRYSHKKQIKIDYEAQFPTDPMLNDKIK
Ga0307515_101711161	3300028794	Ectomycorrhiza	MPKFMTLILRPRYSHKKQIKTDYEAQFPTDPMLNDKIERKTIK
Ga0307515_101940991	3300028794	Ectomycorrhiza	MSKPVTLIIRLRYSLEKQIKINYEAQFPTDPMLNDKI
Ga0307515_102163931	3300028794	Ectomycorrhiza	MLKPVTLILKPRYSHKKQIKIDYEAQFSTNLMLNDKIEKK
Ga0307515_102238831	3300028794	Ectomycorrhiza	MPKLLTLILRLRYSNKKQIKTDYKTQFPTNPMLNDKIKKKLIK
Ga0307515_108451781	3300028794	Ectomycorrhiza	MPKLVTLILRPKYSYKKQIKIDYETQFPTDQILNDKIKKKTSIK
Ga0307511_100470392	3300030521	Ectomycorrhiza	MPKLLTLILRLRYSNKKQIKTDYKTQFPTNPMLNDKIKKN
Ga0307511_101009652	3300030521	Ectomycorrhiza	MPKSMTLILRPRYSHKKQIKTDYEAQFPTDPMLNDKIEKKQ
Ga0307511_101083472	3300030521	Ectomycorrhiza	MLKLVTLILKPRYSHKKQLKIDYETQFSTDPMLNDKIEKKSIK
Ga0307511_101100661	3300030521	Ectomycorrhiza	MPKPVTMILKPRYSPKKQIKIDYETQFSTDPMLNDKIGKKSIK
Ga0307511_101332041	3300030521	Ectomycorrhiza	TLILRLRYSYKKQTKIDYETQFPTDSMFNDRIEKKIN
Ga0307511_103416031	3300030521	Ectomycorrhiza	LKRVTLILRPRYSHKKQIKIDYEIQFPTDPMLNDKIKKKIN
Ga0307511_103834991	3300030521	Ectomycorrhiza	SVTLVMRPIYHHKKQIKIDYKVQFSTNPILNDKIRKSQLRK
Ga0307512_101778441	3300030522	Ectomycorrhiza	MPKLVTLILKLRYSHKKQIKIDYEAQFSTDPMLNDKIK
Ga0307512_102065652	3300030522	Ectomycorrhiza	MPKPVTLILRPIYSHKKQIKIDYEAQFSTDRMLNDKIKKIIIK
Ga0307512_102909031	3300030522	Ectomycorrhiza	MVKIPKLMTLIARLRYSNKKQIKTYYKTQFSTDPVLNDKILKKIN
Ga0307513_1000974612	3300031456	Ectomycorrhiza	MLKLVTLIVRPKYSNKKQIKTDYEAQFPTDPMLNDKIKKQIN
Ga0307513_100399111	3300031456	Ectomycorrhiza	MTLILRPKYSYKKQIKIDYEAQFLTDLMLNDKIKKN
Ga0307513_100427961	3300031456	Ectomycorrhiza	MPKPVTLILSPEYSHKKQIKIYYEAQFPTDRMLNDKIEKK
Ga0307513_100653822	3300031456	Ectomycorrhiza	MLKLVTLIVRQRYSHKNQIKIDYEAQLPTDLMLNDKIKNKIN
Ga0307513_100851123	3300031456	Ectomycorrhiza	MPKLVTLILRPRYSYKKQIKIDYETQFPTDQILNDKIKKKNIN
Ga0307513_101428851	3300031456	Ectomycorrhiza	MSKLVTLILRPIYSHKKQIKIDYETQFLTDPMLNDKIEKK
Ga0307513_101890411	3300031456	Ectomycorrhiza	VKMLKLVTLILRPIYSHKKQIKIDYEAQFPTNPMLNNKIKKKFN
Ga0307513_102286312	3300031456	Ectomycorrhiza	VKMSKLVTLILRPIYSHKKQIKIDYETQFLTDPMLNDKIEKKLIK
Ga0307513_102335251	3300031456	Ectomycorrhiza	VKMSKLVTLILRPIYSHKKQIKIDYETQFLTDPMLNDKIEKKSIK
Ga0307513_102383361	3300031456	Ectomycorrhiza	MPKPVTLILRPIYSHKKQIKIAYEAQFSTDRMLNDKIKKIIIK
Ga0307513_104836911	3300031456	Ectomycorrhiza	MLKLVTLILRPIYSHKKQIKIDYEAQFPTNPMLNN
Ga0307513_107688501	3300031456	Ectomycorrhiza	TLILRPRYSHKKQIKIDYKARFLTDSILNNKIKNKIN
Ga0307509_100911321	3300031507	Ectomycorrhiza	MSKLVTLILRPIYSHKKQIKIDYETQFLTDPMLNDKIEK
Ga0307509_101296651	3300031507	Ectomycorrhiza	MVKMSKPVTLILRQIYSHKKQIKIDYETQFSTDPMLNDTILKKSIK
Ga0307509_101554151	3300031507	Ectomycorrhiza	MIXFKQGXMPKPMTMILKPRYSPKKQIKIDYETQFPTDPMLNDKIEKKIN
Ga0307509_102102541	3300031507	Ectomycorrhiza	MSKLMTLILRTRCSHKKLIKIDYEVQFPTDQMLNDNFLKKTN
Ga0307509_102550261	3300031507	Ectomycorrhiza	MPKLLTLILRLRYSNKKQIKIDYKTQFPTNPILNDKIKKN
Ga0307509_108109381	3300031507	Ectomycorrhiza	RVKMSKLVTLILRPIYSHKKQIKIDYETQFLTDPMLNDKIEKKIN
Ga0307508_100292392	3300031616	Ectomycorrhiza	MPKLVTLILRPRYSHKKQIKIDYKARFLTDSILNDKIKNKIN
Ga0307508_100362272	3300031616	Ectomycorrhiza	MPKHLILILKSRYSPKKQIKINYKAQFSIDPMLNDKIKNKIN
Ga0307508_100424593	3300031616	Ectomycorrhiza	MTLILRPRYSHKRQTKIDYEAQFSTDLMLNDKIKKKLNKRQKKTT
Ga0307508_101235072	3300031616	Ectomycorrhiza	MSKLVTLILRPIYSHKKQIKIDYETQFLTDPMLNDKIEKKIN
Ga0307508_106792591	3300031616	Ectomycorrhiza	MTLIVRPRYSHKKHIKTNYEAQLSTNLILNDKIKKI
Ga0307514_100340282	3300031649	Ectomycorrhiza	MSKLVTLILKPRYSHKNQMKIDYEAHFLTDLMLNDKIFKKSIK
Ga0307514_100430122	3300031649	Ectomycorrhiza	MPKLLTLILRLRYSHKKQIKIDYKTQFPTNPMLNDKIKKN
Ga0307514_101382161	3300031649	Ectomycorrhiza	MSKLVTLIMRPKYSNKKQIKTDYKAQFPTDPMLNDKIKKQIN
Ga0307516_100876052	3300031730	Ectomycorrhiza	MPKFMTLILRPRYSHKKQIKTDYEAQFPTDPMLNDKIEKKQ
Ga0307516_100931711	3300031730	Ectomycorrhiza	MSKLVTLILKLRYSHKKQIKIDYEAQFSTDPMLNDKIK
Ga0307516_101028732	3300031730	Ectomycorrhiza	MPKSMTLILRPRYSHKKQIKTDYEAQFPTDPMLNDKIK
Ga0307516_101060941	3300031730	Ectomycorrhiza	MSKPVTLIXRPRYPHKKQIKIDYEAQFPIDQMFNDKFF
Ga0307516_102217571	3300031730	Ectomycorrhiza	MLKPVTLILKPRYSHKKQIKIDYEAQFSTNLMLNDKI
Ga0307516_104307331	3300031730	Ectomycorrhiza	MSKPTTFIMKPRYLQKKQIKTKYKVQSPTDPMLND
Ga0307516_105496651	3300031730	Ectomycorrhiza	LDLTEVKMSKPTTFIMKPRYLQKKQIKTKYKVQSPTDPMLNDKIE
Ga0307518_100299342	3300031838	Ectomycorrhiza	MPKFMTLILRPRYSHKKQIKTDYEAQFPTNPMLNDKIERKTIK
Ga0307518_100424441	3300031838	Ectomycorrhiza	MTLILRPRYSHKKQIKIDYEAQFATDPILNDKIKKKSIK
Ga0307518_100804662	3300031838	Ectomycorrhiza	MPKPVTMILKPRYSPKKQIKIDYKTQFPTDPMLNDKIGKKIN
Ga0307518_101725311	3300031838	Ectomycorrhiza	MPKLMTLILRPRILIKKQIKIDYEAQFPTDQILNDKIEKKIN
Ga0325403_10159524	3300032354	Xylem	MPKIITLILRSRYSHKKQSKTDYEAQFPIDPMLNDKIEKKIN
Ga0325403_10173241	3300032354	Xylem	MSKLVTLILKPRYSHKKQIKIDYETQFTNDPMLNDKIK
Ga0325403_10205622	3300032354	Xylem	MLKLVTLILKPRYSYKKQLKIDYETQFSTDPMLNDKIKKN
Ga0325403_10347022	3300032354	Xylem	MPKLITLILRPRYSHKKQIKIDHETQFSTDQILNDEIEKKIN
Ga0325403_10448261	3300032354	Xylem	MPKPVTLILRPKYSHKNKIKIYHEPQFLTDSMSNDKIKKN
Ga0325403_10454403	3300032354	Xylem	MSKLVTLILKPRYSHKKQIKIDYETQFPNDPMLNDKIK
Ga0325403_10663052	3300032354	Xylem	MPKLVTLIVKLRYSHKKIKTDYEDQFSTNPILNFKIKKN
Ga0325401_10029369	3300032355	Xylem	MLKLMVLILRPRYSYKKQIKIDYETQFSTYPLLNDKIEKNN
Ga0325401_10038978	3300032355	Xylem	MPKHVTLILRPRYSYKKEVKIDYETQFPTNPILNDKIENKSIK
Ga0325401_10890381	3300032355	Xylem	MPKLVNLILRPIYSYKKQIKIDYETQFPTDSMFNDRIEKKSIK
Ga0325405_10024768	3300032389	Xylem	MPKLVTLIVRPRYSYKKQIKINHKAQFSTDPVLNDKILKKSIK
Ga0325405_10172134	3300032389	Xylem	MPKIITLILRSRYSHKKQSKTDYEAQFPIDSMLNDKIEKKIN
Ga0325405_10253025	3300032389	Xylem	MPKLVTLIVRPRYTHKKQIKINYETQFSTDPMLNNKIKKSIK
Ga0325405_10381151	3300032389	Xylem	MILILRLRYSHQKQIKIDYEAQFPTDQILNDKIEKKIN
Ga0325405_10403841	3300032389	Xylem	MSKLVTLILKPRYSHKKQIKIDYEAQFPNDPMLNDKIK
Ga0325405_10539202	3300032389	Xylem	MPKPVTLILRPKYSHKNKIKIYHEPQFLTDSMSNDKIKKKLNK
Ga0307507_105591931	3300033179	Ectomycorrhiza	LILRPRYSYKKQTKIDYETQFPTDSMFNDRIEKKIN
Ga0307510_100541422	3300033180	Ectomycorrhiza	MPKPVTLILRPRYFHKKQIKIDYEAQFPTDRMLNDKIEKIIIK
Ga0307510_100761802	3300033180	Ectomycorrhiza	MPKPVTMILKPRYSPKKQIKIDYETQFPTDPMLNDKIGKKSIK
Ga0307510_100942584	3300033180	Ectomycorrhiza	MSKLVTLILRLRYSYKKQTKIDYETQFPTDSMFNDRIEKKIN
Ga0307510_101712931	3300033180	Ectomycorrhiza	MPKLLTLILRLRYSNKKQIKTDYKTQFPTNPMLNDKIKKNLIK
Ga0307510_104567231	3300033180	Ectomycorrhiza	KLVTLILKPRYSHKNQMKIDYEAHFLTDLMLNDKIFKKSIK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F096310

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences