NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F096409

Metagenome / Metatranscriptome Family F096409

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096409
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 49 residues
Representative Sequence MVKLISTESSLMFLDPKFYRHEYMTKIEFHKYSQIFLSKETIYYN
Number of Associated Samples 65
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 1.92 %
% of genes near scaffold ends (potentially truncated) 78.85 %
% of genes from short scaffolds (< 2000 bps) 100.00 %
Associated GOLD sequencing projects 65
AlphaFold2 3D model prediction Yes
3D model pTM-score0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (93.269 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere
(75.962 % of family members)
Environment Ontology (ENVO) Unclassified
(92.308 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant surface
(91.346 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 20.55%    β-sheet: 12.33%    Coil/Unstructured: 67.12%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.32
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A93.27 %
All OrganismsrootAll Organisms6.73 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005335|Ga0070666_11226954Not Available559Open in IMG/M
3300005367|Ga0070667_100889677Not Available829Open in IMG/M
3300009992|Ga0105120_1024782Not Available682Open in IMG/M
3300010371|Ga0134125_11360545Not Available774Open in IMG/M
3300010371|Ga0134125_12230690Not Available595Open in IMG/M
3300010397|Ga0134124_12724559Not Available538Open in IMG/M
3300014968|Ga0157379_10851798All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum863Open in IMG/M
3300014968|Ga0157379_11528144Not Available650Open in IMG/M
3300015278|Ga0182099_1033325Not Available630Open in IMG/M
3300015278|Ga0182099_1058411Not Available539Open in IMG/M
3300015284|Ga0182101_1064369Not Available587Open in IMG/M
3300015293|Ga0182103_1027686Not Available762Open in IMG/M
3300015297|Ga0182104_1063401Not Available633Open in IMG/M
3300015297|Ga0182104_1118726Not Available505Open in IMG/M
3300015306|Ga0182180_1055774Not Available609Open in IMG/M
3300015310|Ga0182162_1095970Not Available564Open in IMG/M
3300015311|Ga0182182_1023150Not Available882Open in IMG/M
3300015311|Ga0182182_1026135Not Available849Open in IMG/M
3300015312|Ga0182168_1027810Not Available889Open in IMG/M
3300015313|Ga0182164_1127981Not Available517Open in IMG/M
3300015315|Ga0182120_1011774Not Available1164Open in IMG/M
3300015315|Ga0182120_1113038Not Available547Open in IMG/M
3300015316|Ga0182121_1046892All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum782Open in IMG/M
3300015316|Ga0182121_1085806Not Available625Open in IMG/M
3300015316|Ga0182121_1124511Not Available538Open in IMG/M
3300015316|Ga0182121_1138723Not Available513Open in IMG/M
3300015317|Ga0182136_1141231Not Available502Open in IMG/M
3300015318|Ga0182181_1093909Not Available542Open in IMG/M
3300015319|Ga0182130_1037736All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum791Open in IMG/M
3300015319|Ga0182130_1091813Not Available586Open in IMG/M
3300015320|Ga0182165_1059031Not Available715Open in IMG/M
3300015320|Ga0182165_1076372Not Available651Open in IMG/M
3300015320|Ga0182165_1126071Not Available536Open in IMG/M
3300015320|Ga0182165_1132975Not Available525Open in IMG/M
3300015325|Ga0182148_1124509Not Available536Open in IMG/M
3300015328|Ga0182153_1030600Not Available894Open in IMG/M
3300015328|Ga0182153_1048973Not Available767Open in IMG/M
3300015331|Ga0182131_1082362Not Available648Open in IMG/M
3300015331|Ga0182131_1143201Not Available521Open in IMG/M
3300015331|Ga0182131_1144376Not Available519Open in IMG/M
3300015332|Ga0182117_1030432Not Available979Open in IMG/M
3300015333|Ga0182147_1064029Not Available742Open in IMG/M
3300015333|Ga0182147_1128406Not Available565Open in IMG/M
3300015333|Ga0182147_1131218Not Available560Open in IMG/M
3300015333|Ga0182147_1148688Not Available531Open in IMG/M
3300015333|Ga0182147_1151410Not Available527Open in IMG/M
3300015334|Ga0182132_1121292Not Available580Open in IMG/M
3300015335|Ga0182116_1071142Not Available741Open in IMG/M
3300015335|Ga0182116_1120152Not Available600Open in IMG/M
3300015336|Ga0182150_1129722Not Available557Open in IMG/M
3300015337|Ga0182151_1084047Not Available660Open in IMG/M
3300015338|Ga0182137_1141106Not Available558Open in IMG/M
3300015339|Ga0182149_1028203Not Available998Open in IMG/M
3300015339|Ga0182149_1121483Not Available586Open in IMG/M
3300015339|Ga0182149_1171557Not Available505Open in IMG/M
3300015340|Ga0182133_1092998Not Available684Open in IMG/M
3300015340|Ga0182133_1150980Not Available559Open in IMG/M
3300015348|Ga0182115_1129872Not Available802Open in IMG/M
3300015348|Ga0182115_1162464Not Available716Open in IMG/M
3300015348|Ga0182115_1189287Not Available660Open in IMG/M
3300015348|Ga0182115_1228262Not Available594Open in IMG/M
3300015349|Ga0182185_1123369Not Available758Open in IMG/M
3300015350|Ga0182163_1111235All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum838Open in IMG/M
3300015350|Ga0182163_1167454Not Available686Open in IMG/M
3300015350|Ga0182163_1192434Not Available639Open in IMG/M
3300015350|Ga0182163_1198276Not Available629Open in IMG/M
3300015350|Ga0182163_1242337Not Available565Open in IMG/M
3300015352|Ga0182169_1135812Not Available799Open in IMG/M
3300015352|Ga0182169_1191384Not Available669Open in IMG/M
3300015353|Ga0182179_1012692All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum1803Open in IMG/M
3300015353|Ga0182179_1100327Not Available865Open in IMG/M
3300015354|Ga0182167_1249617Not Available640Open in IMG/M
3300015354|Ga0182167_1254133Not Available633Open in IMG/M
3300017408|Ga0182197_1134547Not Available526Open in IMG/M
3300017414|Ga0182195_1175703Not Available554Open in IMG/M
3300017422|Ga0182201_1141134Not Available507Open in IMG/M
3300017432|Ga0182196_1076867Not Available644Open in IMG/M
3300017435|Ga0182194_1136976Not Available527Open in IMG/M
3300017439|Ga0182200_1118385Not Available565Open in IMG/M
3300017440|Ga0182214_1044041All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum888Open in IMG/M
3300017445|Ga0182198_1158357Not Available555Open in IMG/M
3300017447|Ga0182215_1078099Not Available724Open in IMG/M
3300017693|Ga0182216_1107466Not Available675Open in IMG/M
3300017693|Ga0182216_1201385Not Available525Open in IMG/M
3300017694|Ga0182211_1063168Not Available853Open in IMG/M
3300017694|Ga0182211_1156212Not Available543Open in IMG/M
3300025910|Ga0207684_11090999Not Available665Open in IMG/M
3300028049|Ga0268322_1042659Not Available556Open in IMG/M
3300028050|Ga0268328_1014626Not Available863Open in IMG/M
3300028053|Ga0268346_1034967Not Available545Open in IMG/M
3300028058|Ga0268332_1032059Not Available697Open in IMG/M
3300028058|Ga0268332_1051397Not Available592Open in IMG/M
3300028058|Ga0268332_1076465Not Available509Open in IMG/M
3300028143|Ga0268348_1010800Not Available663Open in IMG/M
3300028150|Ga0268343_1006538Not Available732Open in IMG/M
3300028151|Ga0268308_1015686Not Available645Open in IMG/M
3300028256|Ga0268304_1016190Not Available500Open in IMG/M
3300028467|Ga0268333_1013084Not Available519Open in IMG/M
3300028470|Ga0268307_1003567Not Available884Open in IMG/M
3300028470|Ga0268307_1011354Not Available641Open in IMG/M
3300028476|Ga0268329_1017179Not Available595Open in IMG/M
3300028527|Ga0268335_1006432Not Available690Open in IMG/M
3300028529|Ga0268311_1003313Not Available976Open in IMG/M
3300032915|Ga0314749_1102672All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Oryzinae → Oryza → Oryza sativa614Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere75.96%
PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere15.38%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.88%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.92%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.92%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.96%
Switchgrass AssociatedHost-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated0.96%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300009992Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_108 metaGHost-AssociatedOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015278Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015284Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015293Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015297Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015306Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015310Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015311Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015312Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015313Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015315Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015316Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015317Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015318Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015319Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015320Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015325Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015328Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015331Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015332Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015333Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015334Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015335Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015336Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015337Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015338Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015339Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015340Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015348Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015349Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015350Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015352Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015353Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015354Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017408Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017414Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017422Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017432Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017435Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017439Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017440Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017445Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017447Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017693Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017694Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028049Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028050Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028053Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028058Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028143Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028150Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028151Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028256Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_15MAY2017_LD1Host-AssociatedOpen in IMG/M
3300028467Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028470Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_15MAY2017_LD1Host-AssociatedOpen in IMG/M
3300028476Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028527Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028529Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300032915Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0070666_1122695413300005335Switchgrass RhizosphereMVKLISTENSIMFLDPKFYRHEHMTKIEFHKYSQIFLTMETIYYNQSLLNKH*
Ga0070667_10088967713300005367Switchgrass RhizosphereNRSNNFDKIKPHMVKLISIDRSIVFLDLKFYSHEYMTKIEFHKYSQIFLSKETIYHN*
Ga0105120_102478213300009992Switchgrass AssociatedRSNNFEKIKPHMVKLISTKSSVMFLDRKFERHKHMTKIEFHKYSQIFLRKKTIYYN*
Ga0134125_1136054523300010371Terrestrial SoilMVKLISTESSIMFLVLKFNRHGYMTKIEFYKNFQNFLSKE
Ga0134125_1223069013300010371Terrestrial SoilMVKLISTESSITFLDPKFYRLENMTKIEFHKYSQI
Ga0134124_1272455923300010397Terrestrial SoilKIKPHMVKLISTESSITFRDPKFYKHEHITKIEFHNFFQICLSKETIYYN*
Ga0157379_1085179813300014968Switchgrass RhizosphereMGKLISAEGSVMFLDPKFYKHEHITKIENHKYSQIFISKETIYYN*
Ga0157379_1152814413300014968Switchgrass RhizosphereKKINNFDKIKPYMVKLISTESSVMYLDTKFYRHEHMTKIEFNKYSQIFLSKETIYYN*
Ga0182099_103332523300015278Switchgrass PhyllosphereMVKLISTESHIVFLDFKFYRHEHMTKIEFRKYSQIFLSK
Ga0182099_105841113300015278Switchgrass PhyllosphereRSNNFDKFKPHMAKLISTESSVTFLNPKFYIHEHMTKIEFQKYSQIFLSNGTIYYN*
Ga0182101_106436913300015284Switchgrass PhyllosphereNYNFDKIKPHMEKLISRESYITFLDLKFYIHEHLTKIEFHKYSQIFLSKETIYHN*
Ga0182103_102768613300015293Switchgrass PhyllosphereMIKPISIGSYIEFMDPKFYRHEHMTEIEFHKNYQNFLGKETIYHN*
Ga0182104_106340113300015297Switchgrass PhyllosphereSTESSIMFLDPKFYRHEHMTKIEFHKYYQIFISKETIYYN*
Ga0182104_111872613300015297Switchgrass PhyllosphereMIKLISTESSVMFLDPKFYRYEHMTKIEYRKYSQI
Ga0182180_105577413300015306Switchgrass PhyllosphereNKSNNFDKAKSHTVKLIVQKISIKFMVLKFYRHGYMTKIEFHKKFQIFISKEAIYHN*
Ga0182162_109597013300015310Switchgrass PhyllosphereRSNNFDKIKPHMVKLISTESSIMFLDPKFYRHEHMNKIEFHKYSQICPSKETIYHN*
Ga0182182_102315023300015311Switchgrass PhyllosphereMVKLISTESSIVFLDLKFYRHEYMTEIEFHKFFQIFLSKETIY
Ga0182182_102613513300015311Switchgrass PhyllospherePHMIKLISTGSYIVFLDPKFYRHEHMTEIEFHKNYQNFLGKETIYHN*
Ga0182168_102781013300015312Switchgrass PhyllosphereMVKLISTESSIMFLDPKFYRQEHMTKIEFHKYSHIFL
Ga0182164_112798113300015313Switchgrass PhyllosphereMAKLISTESYITFLDPKFYIHEHMTKIEFNKNSKIFLRKETIY
Ga0182120_101177413300015315Switchgrass PhyllosphereNRSNNFDKIKPHMVKLISIESSIVFMNPKFYRHEYMTKIEFNKYSNIFLSKENIYYN*
Ga0182120_111303813300015315Switchgrass PhyllosphereMLMNKLPYRSNNFGTIKPHRVKLISTESSIVFLVLKFYRHEYITNIEFHIFSQIFLSKET
Ga0182121_104689213300015316Switchgrass PhyllosphereMVKLISTESYITFLVLNFYRHEYMTKIELHKNSQNFLRKETIYRN
Ga0182121_108580613300015316Switchgrass PhyllosphereGKIKPHMVKLISIDSSIVFMDLKLYKLEYMTKIEFQKYYHIFLNKEAIYYN*
Ga0182121_112451113300015316Switchgrass PhyllosphereVKLFSTESSIVFLDPKFYRHEHMTKVEFHNYSKIFIRK*
Ga0182121_113872313300015316Switchgrass PhyllosphereMVKLISTESSITFMDPKFYRHEHMTKIECVKFSQIFLSKETIYHNEILLNKH*
Ga0182136_114123113300015317Switchgrass PhyllospherePHMAKLIRTERSIMFLDPKFSRIEHMTKIEFHKYFQIFLSKETIYHN*
Ga0182181_109390913300015318Switchgrass PhyllosphereRSNNFNKIKPHMVKLISTEISIMFLDPKFYRHEYMNKIQFHKYSQIFLNKKTIYYN*
Ga0182130_103773613300015319Switchgrass PhyllosphereMEKLIITESFIVFLDLKFYRHEYMTKVEFHKFSQIFLS
Ga0182130_109181313300015319Switchgrass PhyllosphereMVKLISTESSITFLDLKFYRHEHMTKLESQKYFHIFLSKKTIYY
Ga0182165_105903113300015320Switchgrass PhyllosphereHGSYIYEHPINFSEFIYSQNRSNNFDKTKPYMIKLISTRSSIIFLVLKFYRHGYMTKIEFHKKFQIFISKEAIYHN*
Ga0182165_107637223300015320Switchgrass PhyllosphereMVKLISTESSIMFLDPKFYIREHMIKIEFHKYFQMFLIKETIYYN*
Ga0182165_112607113300015320Switchgrass PhyllosphereKIKPHMVKLISTESSIMFLDPTFYRHEHMTKIELHKYSQIFLRKETIYYN*
Ga0182165_113297513300015320Switchgrass PhyllosphereMVKLISTESSITFLDTKFYKHEHMIKIEFHKYSQIFLSK
Ga0182148_112450913300015325Switchgrass PhyllosphereMVKLISTESSIMFLVLNFHRHEYVTKIEFHKFSRIF
Ga0182153_103060023300015328Switchgrass PhyllosphereMEKLISIESSITFIDTKFYRHEHITKIEFNKYSQIFVSK*
Ga0182153_104897313300015328Switchgrass PhyllosphereIKLVSIGSYIVFLDPKFYRQEDMTRIEFYKNSQNFISKETIYHN*
Ga0182131_108236213300015331Switchgrass PhyllosphereKIKPHIVKLISTESSTMFLDPKFYKHEHMTKIEFHEYSQIFLSKETIYYN*
Ga0182131_114320113300015331Switchgrass PhyllosphereMAKLISTESYITFLDPKFYIHEHMTKIEFHKNSKIFLRKET
Ga0182131_114437613300015331Switchgrass PhyllosphereNNFGKIKPHMVKLISTESSIMFIVLKFY*NGYMTKIEFYKNSQNFLVKETIYHN*
Ga0182117_103043213300015332Switchgrass PhyllosphereMIKLINTGIYIVFMDPKFYRHEHMTEIEFHKNYQNFLNKETIYHN*
Ga0182147_106402913300015333Switchgrass PhyllosphereMIKLINTGIYIVFMDPKFYRHEHMTEIEFHKNYQNFLGKETIYHN*
Ga0182147_112840613300015333Switchgrass PhyllosphereMVKLISTESYITFLDPKFIRHEHMTKIKFHKYSQIF
Ga0182147_113121813300015333Switchgrass PhyllosphereNRSNNFDKIKPHMAKLISTESSITFLDSKFYIHKHMTKIEFHKYSQMFLSKETIYYN*
Ga0182147_114868813300015333Switchgrass PhyllosphereMVKLISTENFVMFLDPKFYRHEHMTKIEFHKYSYIFLTKETIYYNQSLLNKY*
Ga0182147_115141013300015333Switchgrass PhyllosphereSHMEKLISTESSITFLDPKFYKHEHMTKIEFHKYSQIFLIKETIYQN*
Ga0182132_112129213300015334Switchgrass PhyllosphereMVKLISTESFITFLDPKFCRHEHMTKIEFHKYSQIFLSKETIY
Ga0182116_107114213300015335Switchgrass PhyllosphereMEKLISIESSITFLDTKFYRHEHIPKIEFNKYSQIF
Ga0182116_112015213300015335Switchgrass PhyllosphereMVKQISTESSIVFLDLQFYRHEYMTTIEFRKFYQIFLSKETIYH
Ga0182150_112972223300015336Switchgrass PhyllosphereMIKLISTENDIVFLDLKFYKPEYMTRIEFHKNYQNFISKETIYHN*
Ga0182151_108404713300015337Switchgrass PhyllosphereAINFSEFIYESNRSNNFDKIKPHMVKLISTESYIIFLDPKFFRHEHMTYIEFHKYSQIFLSKETIYHN*
Ga0182137_114110613300015338Switchgrass PhyllosphereMAKLISTKSSIMFLDSRFYIHEHIIEIEFHKNSQNFLRKETIYH
Ga0182149_102820313300015339Switchgrass PhyllosphereSTGSAIVFPVLKVYRNEYMTKIEFYKNSRNFISKETIYHN*
Ga0182149_112148313300015339Switchgrass PhyllosphereMKPHMAKLISTESSILFLEHKFYKHEHMTKIELHKNYHIFLSKETIYHN*
Ga0182149_117155713300015339Switchgrass PhyllosphereNRSNNFDKIKPHMEKLISIESSVMFLDPKFYRHEYMAKIEFHKYSQIFLSQETIYYN*
Ga0182133_109299813300015340Switchgrass PhyllosphereKLISTESFIQFHDPKFYRHEHMTKIEFHKFSQIFLSKQTIYHN*
Ga0182133_115098013300015340Switchgrass PhyllosphereMVKLINTDSYIVFLDPKFYRHEHMTKIEFEQKSQNFLNKETFYHN*
Ga0182115_112987213300015348Switchgrass PhyllosphereMWAQNRSNNFDKIKPHMIRLISTGGSIVFLDPKFYRHEYRTKVELHKNYQNFLSKETIYHN*
Ga0182115_116246413300015348Switchgrass Phyllosphere*NNNFNNIKPHMIKLISTGSYIVFLDPKFYRHEHTTKIEFYKNSQNFLSKETIYHN*
Ga0182115_118928713300015348Switchgrass PhyllosphereNNFDKIKPHMIILISTESSITFLDAKFYRHEHMTKIEFHKYAQIFLRKETIYYN*
Ga0182115_122826213300015348Switchgrass PhyllosphereMVKPISTGIYIVFMDPKFRRHEHMTEIEFHKNSQIFLSKETIYEN*
Ga0182185_112336913300015349Switchgrass PhyllosphereMEKLISTESSIMFLDPKFYRHEHMTKIEFPKYFQIFLSKETIYYN*
Ga0182163_111123523300015350Switchgrass PhyllosphereMVKLISTESSIMFLDPQFYRLQQMTKIEFHKYSQIFLSKETIYY
Ga0182163_116745413300015350Switchgrass PhyllosphereMVKLISTESSLMFLDPKFYRHEYMTKIEFHKYSQIFLSKETIYYN
Ga0182163_119243413300015350Switchgrass PhyllosphereMVKLISTESSITFLDPKLYRHEYTTKIEFHKFSQIFLSKETIY
Ga0182163_119827613300015350Switchgrass PhyllosphereMEKLISTESYIIFLDPKFYRNEHMTKLEFHKYSQIFLSK
Ga0182163_124233713300015350Switchgrass PhyllosphereKIKPHMIKLISTGSYIVFLDPKFYIQEHMTKIQFYKNSQNFLSKETIYHNQGLLNKH*
Ga0182169_113581213300015352Switchgrass PhyllosphereNFDKSKPHMKKLISTGSSMVFLGSKFYIHEHMTKAEFYKNSKIFLSKETI*
Ga0182169_119138413300015352Switchgrass PhyllosphereAQNRSNNFDKIKPHMVKLISIDRSIVFLDLKFYSHEYMTKIEFRKYSQIFLSKETIYHN*
Ga0182179_101269243300015353Switchgrass PhyllosphereMVKLISTECSIMFLDPKFYRHEHMTKIGFHKYSQIFLSKETIYYNEILLSKH*
Ga0182179_110032713300015353Switchgrass PhyllosphereNIVKQISKESYITFRDNKFYKHEHITKIEFHNFFQICLSKETIYYN*
Ga0182167_124961713300015354Switchgrass PhyllosphereNRSNNFDKIKTHTVKLISTKGSIMFLDPKYYRHEHMTKIEFQKYSQIFLSKETIYHN*
Ga0182167_125413313300015354Switchgrass PhyllosphereMAKLISIESSITFLDPKFYRREHMTKIEFQKYSQIFISKETIYRN*
Ga0182197_113454713300017408Switchgrass PhyllosphereRSNNFDKIKPHMVKLISTESSIMFLDPKFYRHEHMTKIEFHKYSQSFLSKETIYHN
Ga0182195_117570313300017414Switchgrass PhyllosphereNFDKIKPHMAKLISTESSITFMDPKFYKHEYLTKIEFHKYSQIFLSKETIYHN
Ga0182201_114113413300017422Switchgrass PhyllospherePHMIKLISTENDIVFLDLKFYKPEYMTRIEFHKNYQNFISKETIYHN
Ga0182196_107686713300017432Switchgrass PhyllosphereMVKLISTESSITFLDTKFYKHEHMIKIEFHKYSQIF
Ga0182194_113697613300017435Switchgrass PhyllosphereSNNFDKIKPHMVKLISTESCITIMDPKFYRHETMTKIEFHKYSQIF
Ga0182200_111838513300017439Switchgrass PhyllosphereHMIKLISTGSYIVFLDPKFYRHEHMTEIEFHKNYQIFLSKETIYKN
Ga0182214_104404123300017440Switchgrass PhyllosphereMIKLISTGSYIVFMDPKFYRHEHMTEIEFHKNYQNFLGKETIYHN
Ga0182198_115835713300017445Switchgrass PhyllosphereMVKLISIESSIMFRDPKFYKHEHVTKIEFHKFSHIFLSKETI
Ga0182215_107809913300017447Switchgrass PhyllosphereMVKLISQESSVEFLDPKFFRHEHITKIEFQKYYRIF
Ga0182216_110746613300017693Switchgrass PhyllosphereRSNNFDKIKPHMVKLISTESSIVFLDIKFNRHEYMTKIEFHKYSQIFRSKETIYHN
Ga0182216_120138513300017693Switchgrass PhyllosphereMVKLISIESSIVFLDLKFYRHEYMTKIEFHKFSQIFRSKETIY
Ga0182211_106316823300017694Switchgrass PhyllosphereMKPHMVKLISTESSIVFLDPKFFRHEHMTKIEFHKYSQIFLNKE
Ga0182211_115621213300017694Switchgrass PhyllosphereMWAQNRSNNFDKIKPHVVKLISTESYITFLVLNFYRHEYMTKIELHKNSQNF
Ga0207684_1109099913300025910Corn, Switchgrass And Miscanthus RhizosphereKIKPHMVKLISTESSIMFLDPKFYRHEHMTKIEFHKYYQIFISKETIYYN
Ga0268322_104265913300028049PhyllosphereMEKLISTESSIMFLDPKFYRHEHMTKIEFPKYFQIFLSKETIYYN
Ga0268328_101462613300028050PhyllosphereMWAQNRSNNFDKIKPHMIRLISTGGSIVFLDPKFYRHEYRTKVELHKNYQNFLSKETIYH
Ga0268346_103496723300028053PhyllosphereKRSNNFDKIKPHMAKLISTESYITFLVPKFYKHEHMTKIEFHKYFQIFLSKETIYHN
Ga0268332_103205913300028058PhyllosphereMKPHMAKLISTESSILFLEHKFYKHEHMTKIELHKNYHIFLSKETIYHN
Ga0268332_105139713300028058PhyllosphereHKTEVIILTKIKPHMVKLIRKESSIMFLDPKFYKHENMTKIEFHKYSQIFLSKETIYYN
Ga0268332_107646513300028058PhyllosphereFGAINGGKIKTHMVKIISIENSIMFLDPKFYRHEYTTKVELHKNSQNFLNKETIYHN
Ga0268348_101080013300028143PhyllosphereMEKLISTESFIKFLVPIFYRHEHMSKIEFYKNSQIFLIKETI
Ga0268343_100653813300028150PhyllosphereMVKLISTESSIIFLDPKFYKHENMTKVEFHKYFHICLSKETIYY
Ga0268308_101568613300028151PhyllosphereMEKLISTESSIKFLDPKFYRHENMTEIEFHKNYQNFLSKDTIYHN
Ga0268304_101619013300028256PhyllosphereHSYCKIFRIYLGLNRSNNFDKIKPHMVKLISTESYIMFLDPKFYRHEYMTKIEFHKYSQIFLRKETIYYN
Ga0268333_101308413300028467PhyllosphereSNNFDKIKPPMVKLISTESSIIFLDPKFYKHENMTKVEFHKYFHICLSKETIYYN
Ga0268307_100356723300028470PhyllosphereEARTFTEDQNKANLATVNFSEFMWAQNRSNNFDKIKPHMIRLISTGGSIVFLDPKFYRHEYRTKVELHKNYQNFLSKETIYHN
Ga0268307_101135413300028470PhyllosphereMEKLISTESYIIFLDPKFYRHEHMTKLEFHKYSQIFLSKETIYH
Ga0268329_101717923300028476PhyllosphereNFEKIKPHMVKLVSTESSVMFLDPKFYRHEHMTKIEFHKYSHIFLIKKTIYYN
Ga0268335_100643213300028527PhyllosphereMVKLISTESSIMFLDPKFYRHEHITKIEFHKFSHICLSKE
Ga0268311_100331313300028529PhyllosphereMVKLISTESSITFLDPKLYRHEHMTKLEFLKFSQIFLSKETIYHN
Ga0314749_110267213300032915Switchgrass PhyllosphereGSNNFDKIKPHMIKLISTKSYLVFLDPKFYRHENMTKLEFYKNSQNFLSKETIYHN

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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