Metagenome / Metatranscriptome Family F096493

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096493
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	84 residues
Representative Sequence	MNLEIHKPELVQRVNAQIQSRHLHDADELIEQALDALDEKSPAPASAAERRRAAGRKSLVEVFAPLRGLNLDFSRNQSTGRPVDLG
Number of Associated Samples	73
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.31 %
% of genes near scaffold ends (potentially truncated)	26.92 %
% of genes from short scaffolds (< 2000 bps)	83.65 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (65.385 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog (17.308 % of family members)
Environment Ontology (ENVO)	Unclassified (30.769 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (37.500 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.84% β-sheet: 0.00% Coil/Unstructured: 63.16%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF01850	PIN	21.15
PF04255	DUF433	5.77
PF01909	NTP_transf_2	1.92
PF08238	Sel1	0.96
PF00106	adh_short	0.96
PF01555	N6_N4_Mtase	0.96
PF05016	ParE_toxin	0.96
PF14693	Ribosomal_TL5_C	0.96
PF03129	HGTP_anticodon	0.96
PF03050	DDE_Tnp_IS66	0.96
PF15919	HicB_lk_antitox	0.96
PF00221	Lyase_aromatic	0.96
PF03695	UPF0149	0.96
PF00654	Voltage_CLC	0.96
PF00464	SHMT	0.96
PF02190	LON_substr_bdg	0.96
PF08681	DUF1778	0.96
PF02796	HTH_7	0.96
PF07676	PD40	0.96
PF02518	HATPase_c	0.96
PF12704	MacB_PCD	0.96
PF08241	Methyltransf_11	0.96
PF14339	DUF4394	0.96
PF02913	FAD-oxidase_C	0.96
PF00723	Glyco_hydro_15	0.96
PF01527	HTH_Tnp_1	0.96
PF13419	HAD_2	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	5.77
COG0038	H+/Cl- antiporter ClcA	Inorganic ion transport and metabolism [P]	0.96
COG0112	Glycine/serine hydroxymethyltransferase	Amino acid transport and metabolism [E]	0.96
COG0124	Histidyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.96
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.96
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.96
COG0423	Glycyl-tRNA synthetase, class II	Translation, ribosomal structure and biogenesis [J]	0.96
COG0441	Threonyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.96
COG0442	Prolyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.96
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.96
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.96
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.96
COG2986	Histidine ammonia-lyase	Amino acid transport and metabolism [E]	0.96
COG3079	Uncharacterized conserved protein YgfB, UPF0149 family	Function unknown [S]	0.96
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	0.96
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.96
COG4453	Uncharacterized conserved protein, DUF1778 family	Function unknown [S]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.38 %
Unclassified	root	N/A	34.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.38 %
Unclassified	root	N/A	34.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.38 %
Unclassified	root	N/A	34.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.62 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	18.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.77 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.62 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11.54 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.85 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.92 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.62 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	5.77 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.81 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	3.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.92 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.62 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.81 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	3.85 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	3.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.62 %
Nevskia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia	3.85 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	2.88 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	2.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.92 %
Bryobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter	0.96 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.62 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	3.85 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	2.88 %
Granulicella rosea	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella rosea	2.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.92 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	0.96 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004092\|Ga0062389_100315060	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1640	Open in IMG/M
3300004635\|Ga0062388_100579585	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300005531\|Ga0070738_10293180	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300005563\|Ga0068855_101236171	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300005712\|Ga0070764_10588898	Not Available	677	Open in IMG/M
3300006052\|Ga0075029_100212048	Not Available	1213	Open in IMG/M
3300006162\|Ga0075030_101170811	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300009175\|Ga0073936_10086439	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	2636	Open in IMG/M
3300009500\|Ga0116229_11309045	Not Available	576	Open in IMG/M
3300009500\|Ga0116229_11309938	Not Available	576	Open in IMG/M
3300009686\|Ga0123338_10484083	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300009701\|Ga0116228_10387285	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300009709\|Ga0116227_10784400	Not Available	718	Open in IMG/M
3300009764\|Ga0116134_1007486	All Organisms → cellular organisms → Bacteria	4867	Open in IMG/M
3300009826\|Ga0123355_12021296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	533	Open in IMG/M
3300010371\|Ga0134125_10126328	All Organisms → cellular organisms → Bacteria	2847	Open in IMG/M
3300010396\|Ga0134126_10017144	All Organisms → cellular organisms → Bacteria	9180	Open in IMG/M
3300010399\|Ga0134127_10261184	All Organisms → cellular organisms → Bacteria	1647	Open in IMG/M
3300012469\|Ga0150984_121226114	Not Available	1090	Open in IMG/M
3300013104\|Ga0157370_11196583	Not Available	686	Open in IMG/M
3300014158\|Ga0181521_10004558	All Organisms → cellular organisms → Bacteria → Acidobacteria	15736	Open in IMG/M
3300014159\|Ga0181530_10186256	All Organisms → cellular organisms → Bacteria	1153	Open in IMG/M
3300014159\|Ga0181530_10268553	Not Available	906	Open in IMG/M
3300014167\|Ga0181528_10161710	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300014167\|Ga0181528_10322907	Not Available	836	Open in IMG/M
3300014168\|Ga0181534_10436006	Not Available	731	Open in IMG/M
3300014199\|Ga0181535_10885206	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300014201\|Ga0181537_10377697	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300014499\|Ga0182012_10228031	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300014499\|Ga0182012_10711903	Not Available	640	Open in IMG/M
3300014501\|Ga0182024_10123124	All Organisms → cellular organisms → Bacteria → Proteobacteria	3704	Open in IMG/M
3300014501\|Ga0182024_10846191	Not Available	1109	Open in IMG/M
3300014501\|Ga0182024_10938634	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300014838\|Ga0182030_10586119	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300014838\|Ga0182030_10605658	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300014838\|Ga0182030_11376586	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300014839\|Ga0182027_10789462	All Organisms → cellular organisms → Bacteria	995	Open in IMG/M
3300017948\|Ga0187847_10054535	All Organisms → cellular organisms → Bacteria	2271	Open in IMG/M
3300017970\|Ga0187783_11416296	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300018034\|Ga0187863_10118270	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	1482	Open in IMG/M
3300018038\|Ga0187855_10512081	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300018043\|Ga0187887_10377037	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300018043\|Ga0187887_10817986	Not Available	551	Open in IMG/M
3300018043\|Ga0187887_10853699	Not Available	539	Open in IMG/M
3300018046\|Ga0187851_10626710	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300019242\|Ga0181502_1440409	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300021181\|Ga0210388_10137854	All Organisms → cellular organisms → Bacteria → Acidobacteria	2113	Open in IMG/M
3300021181\|Ga0210388_10883323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	771	Open in IMG/M
3300021374\|Ga0213881_10112401	All Organisms → cellular organisms → Bacteria	1182	Open in IMG/M
3300021374\|Ga0213881_10119511	Not Available	1146	Open in IMG/M
3300021384\|Ga0213876_10075581	All Organisms → cellular organisms → Bacteria	1779	Open in IMG/M
3300021384\|Ga0213876_10101712	All Organisms → cellular organisms → Bacteria	1524	Open in IMG/M
3300021384\|Ga0213876_10269424	All Organisms → cellular organisms → Bacteria → Acidobacteria	905	Open in IMG/M
3300021384\|Ga0213876_10805200	Not Available	500	Open in IMG/M
3300021477\|Ga0210398_10283130	Not Available	1352	Open in IMG/M
3300022555\|Ga0212088_10121148	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2313	Open in IMG/M
3300024295\|Ga0224556_1063638	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300025949\|Ga0207667_11131842	Not Available	765	Open in IMG/M
3300028565\|Ga0302145_10068015	Not Available	1231	Open in IMG/M
3300028800\|Ga0265338_10612308	Not Available	758	Open in IMG/M
3300028866\|Ga0302278_10124618	All Organisms → cellular organisms → Bacteria	1385	Open in IMG/M
3300028882\|Ga0302154_10010821	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	5908	Open in IMG/M
3300029817\|Ga0247275_1154778	Not Available	576	Open in IMG/M
3300029883\|Ga0311327_10623851	Not Available	645	Open in IMG/M
3300029911\|Ga0311361_10991005	Not Available	705	Open in IMG/M
3300029911\|Ga0311361_11123552	Not Available	639	Open in IMG/M
3300029913\|Ga0311362_10740402	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300029915\|Ga0311358_10891513	Not Available	625	Open in IMG/M
3300029952\|Ga0311346_10447283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	1228	Open in IMG/M
3300029953\|Ga0311343_10762971	Not Available	796	Open in IMG/M
3300029954\|Ga0311331_10211622	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2192	Open in IMG/M
3300030506\|Ga0302194_10387173	Not Available	546	Open in IMG/M
3300030518\|Ga0302275_10345704	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300030580\|Ga0311355_10759013	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300031090\|Ga0265760_10089643	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella rosea	961	Open in IMG/M
3300031234\|Ga0302325_10089571	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	5831	Open in IMG/M
3300031234\|Ga0302325_10163786	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3937	Open in IMG/M
3300031234\|Ga0302325_11941216	Not Available	730	Open in IMG/M
3300031236\|Ga0302324_100216229	All Organisms → cellular organisms → Bacteria	3037	Open in IMG/M
3300031236\|Ga0302324_101850814	All Organisms → cellular organisms → Bacteria → Acidobacteria	765	Open in IMG/M
3300031524\|Ga0302320_10053451	All Organisms → cellular organisms → Bacteria → Proteobacteria	7132	Open in IMG/M
3300031524\|Ga0302320_12050883	Not Available	534	Open in IMG/M
3300031525\|Ga0302326_11349859	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella rosea	967	Open in IMG/M
3300031525\|Ga0302326_12695688	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300031525\|Ga0302326_13524472	Not Available	519	Open in IMG/M
3300031595\|Ga0265313_10176133	Not Available	901	Open in IMG/M
3300031708\|Ga0310686_100004518	All Organisms → cellular organisms → Bacteria	1371	Open in IMG/M
3300031708\|Ga0310686_101832838	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
3300031708\|Ga0310686_105772068	All Organisms → cellular organisms → Bacteria	11629	Open in IMG/M
3300031708\|Ga0310686_106496405	Not Available	795	Open in IMG/M
3300031708\|Ga0310686_110629662	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	4455	Open in IMG/M
3300031708\|Ga0310686_111304357	Not Available	639	Open in IMG/M
3300031708\|Ga0310686_117382338	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300031715\|Ga0307476_11019246	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300031788\|Ga0302319_10304186	All Organisms → cellular organisms → Bacteria → Acidobacteria	1867	Open in IMG/M
3300031788\|Ga0302319_11308939	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300031788\|Ga0302319_11396642	Not Available	631	Open in IMG/M
3300032515\|Ga0348332_14183246	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella rosea	1117	Open in IMG/M
3300032805\|Ga0335078_10402031	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1798	Open in IMG/M
3300032805\|Ga0335078_10876746	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300032892\|Ga0335081_11897773	Not Available	640	Open in IMG/M
3300033134\|Ga0335073_11003552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	864	Open in IMG/M
3300033561\|Ga0371490_1142089	Not Available	600	Open in IMG/M
3300033887\|Ga0334790_198526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	577	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.58%
Host-Associated	Host-Associated	14.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.50%
Aquatic	Environmental → Aquatic	23.08%
Plants	Host-Associated → Plants	13.46%
Arthropoda	Host-Associated → Arthropoda	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	30.77%
Peat	Environmental → Terrestrial → Peat	28.85%
Freshwater	Environmental → Aquatic → Freshwater	21.15%
Roots	Host-Associated → Plants → Roots	3.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.85%
Peat Moss	Host-Associated → Plants → Peat Moss	3.85%
Sediment	Environmental → Aquatic → Sediment	1.92%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	1.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.92%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.96%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	28.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	18.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	16.35%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.46%
Unclassified	Host-Associated → Plants → Roots → Unclassified	3.85%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	3.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.88%
Lake	Environmental → Aquatic → Freshwater → Lake	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.92%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	1.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.92%
Ice	Environmental → Aquatic → Freshwater → Ice	0.96%
Loam	Environmental → Terrestrial → Soil → Loam	0.96%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.96%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	28.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	17.31%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.50%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	8.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.85%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	3.85%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	3.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.92%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.96%
Glacier	Environmental → Aquatic → Freshwater → Ice → Glacier	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.96%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	17.31%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	8.65%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	7.69%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	7.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.69%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	4.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.85%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	3.85%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	3.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.88%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	2.88%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	1.92%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.92%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.92%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.96%
Glacier Valley	Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.96%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.96%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.96%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.96%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005531	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300009175	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG	Environmental	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009686	Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - groundupSSSS metaG	Environmental	Open in IMG/M
3300009701	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300019242	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022555	Alinen_combined assembly	Environmental	Open in IMG/M
3300024295	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028565	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_3	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028866	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2	Environmental	Open in IMG/M
3300028882	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3	Environmental	Open in IMG/M
3300029817	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029915	III_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029952	II_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029953	II_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300030506	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_1	Environmental	Open in IMG/M
3300030518	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_2	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033561	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB28FN SIP fraction	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062389_1003150602	3300004092	Bog Forest Soil	MNLEIRKPELVQRVNAHIQNGRFHDADEVLEKALDALEEKESVPMSPTERRRAAGRKSLVELFAPLQGLNLDFSRNKSTGRPVDLA*
Ga0062388_1005795853	3300004635	Bog Forest Soil	HIQNGRFHDADEVLEKALDALEEKESVPMSPTERRRAAGRKSLVELFAPLQGLNLDFSRNKSTGRPVDLA*
Ga0070738_102931802	3300005531	Surface Soil	MNIEIHKPELAQRMTAHIQAGHFHDADELIEKALDALEKKAPAPTSPAERRRAAGRRSLVELFEPLRGMDRDFSRNKSPARPVDLS*
Ga0068855_1012361712	3300005563	Corn Rhizosphere	MNLELHKPGLAARVQAHIQNGRFHDADEVIEKALDALEGKTTAPVPEQRRREAGRKSLVEVFAPLRGLNLDFGRDKSTGRPVDFS*
Ga0070764_105888982	3300005712	Soil	MNLEIHKPELVQRVNAHIQTGKFQDAEEVLEKALEALEEKDALEEKDGLEEKAPVPMLPAERRRAVGRKSLVELFAPLQGLNLDFSRNKSTGRPVDL*
Ga0075029_1002120483	3300006052	Watersheds	MNLEIHNPELVRRVRAHIRNGQFHDTDEVIEKALDALEEKTPVSVSSAAERRRAAGRKSLVEVFAPLRGLSLDFSRKQSATRPVDLG
Ga0075030_1011708111	3300006162	Watersheds	MNLEIHNPELVRRVNAHIRNGQFHDTDELIEKALDALEEKTPVPVSSAAERRRAAGRKSLVEVFAPLRGLSLDFSRKQSATRPVDLG*
Ga0073936_100864391	3300009175	Freshwater Lake Hypolimnion	VNLESVKPERARRVNAHIQSGHFHDADELLEKALDALEEEASAPGSSATERRRAAGRKSLVEVFAPLRGMNVDFERSQSASRQVVPG*
Ga0116229_113090452	3300009500	Host-Associated	GLTMNLEIHKPELVQRVNAHIRTGQFHDADELIEKALDALEEKTAAAASSAAERRRAAGRKSLVEVFAPLRGMNLDFSRNKFASRPIDLE*
Ga0116229_113099381	3300009500	Host-Associated	MNLEIHKPELVRRVNAQIQSGQFHDADELIEKALDALEGISPASAAERRRAAGRKSLVEVFAPLRGMNLDFSRN
Ga0123338_104840832	3300009686	Glacier Valley	NLEIHNPELVQRVNAQIQSGQFHDADELLEKALDALEEKTPTSVSPAVERRRAAGRKSLVEVFAPLRGMNLDYSRNQSASRPVDLTD*
Ga0116228_103872851	3300009701	Host-Associated	MNLEIHKPELLDRVHARIQSGHFQSMDDLIEKALDALDVQAAAAPPADAPPHKDIEELFAPLRGLNLDFARNPSTGRPIDL*
Ga0116227_107844001	3300009709	Host-Associated	NAQIQSGQFHDADELIEKALDALEGISPASAAERRRAAGRKSLVEVFAPLRGMNLDFSRNKSASRPVDLG*
Ga0116134_10074866	3300009764	Peatland	MNLEIRKPELVQRVNAQIQSRHLQDADELLQQALDALDEKSPAPASPAERRRAAGRKSLVEVFAPLRGLNLDFSRNKSTGRPVDLS*
Ga0123355_120212961	3300009826	Termite Gut	MNLEIRKPELIQRVHAEIHIRHLHDADELLEQALDALNEKSSPPASAAERRRAAGRKSLVEVFAPLRGMNLDFSRNQSTSRPGVF*
Ga0134125_101263283	3300010371	Terrestrial Soil	VTKSSKCVIIESETIQMNLQLHKPELAERVQAHIRNGHFHDADELIEKALDALEGKTSELPTEQRRGKAGRKNLAEVFAPLRGLNLDFSRDKSTGRPVDFS*
Ga0134126_100171445	3300010396	Terrestrial Soil	MEEMNLEIHDPELAERMNAHIQTGRFHNTDELIGKALDALDEQTPPPKSSATERRRAAGRKSLVEVFAPLRGMNLDFTRNRSASRPIDLA*
Ga0134127_102611842	3300010399	Terrestrial Soil	VTKNSKCVIIKSESIRMNLEIHKPGLADHVQAHIQNGRFHNADELIERALDALERKTTAPPPEQYRREAGRKSLVEVFAPLRGLDLDFSRNKSTGRPVDFS*
Ga0150984_1212261142	3300012469	Avena Fatua Rhizosphere	MNLEIHKPELVQRVSAYIRTGQFNSTDELIEKALDALEGKTPAPKSSAAERRRAAGRKSLVEVFAPLRGMNLDFTRNKSAGRPVDLG*
Ga0157370_111965832	3300013104	Corn Rhizosphere	MNLELHKPGLAARVQAHIQNGRFHDADEVIEKALDALEGKTTAPVPEQRRREAGRKSLVEVFAPLMGLNLDFGRDKSTGCPVDFS*
Ga0181521_100045587	3300014158	Bog	MNLEIHKPELVQRVNAQIQSRHLHDADELIEQALDALDEKSPAPVAAPAEDIEELFAPLRGLNLDFSRNPSIGRPVDL*
Ga0181530_101862562	3300014159	Bog	MNIEIHKPELAQRVNAHIRTGRFHDADELLEKALDALEEKAPAPVSPARERRRAAGRKSLVELFAPLQGLNLDFSRNKSTGRPVDLS*
Ga0181530_102685532	3300014159	Bog	MNLEIRNPGLVQRVNAQIQSGHFHDADELIEKALDALEEKTPAPSSAAERRRAAGRKSLVEVFAPLRGMNLDFSRNQSASRPVDLG*
Ga0181528_101617103	3300014167	Bog	MNLEIHKPELVRRVNAHIRTGHFHDADDLLEKALDALEGKGPAPASVAERRRAAGRKSLVEIFAPLRGMNLDFSRNKSASRPVDLG*
Ga0181528_103229072	3300014167	Bog	MNLEIHKPELVQRLNAHIQNGRFHDADEVLEKALDALEGKEDAVEEKEPLPMSPAERRRAAGRKSLVELFAPLQGLNLDFSRNKSTGRPVDLS*
Ga0181534_104360062	3300014168	Bog	MNLEIHKPELVQRVNAHIQTGKFHDADEVLEKALDALEEKAPVPMSPAERRRAAGRRNLVDLLAPLQGLNLEFSRNKSAGRPVDLS*
Ga0181535_108852062	3300014199	Bog	MNLEIHKPELVQRVNAHIQTGKFHDADEVLEKALDALEEKAPVPMSPAERRRAAGRKSLVELFAPLQGLNLDFSRNKSAGRPVDLS*
Ga0181537_103776972	3300014201	Bog	MEGLTMNLEIHRPELVQRVNAQIQSGHFHDADELIEKALDALEGKTPAPASAAERRRAAGRKSLVEVFAPLRGMNLDFSRNNSAGRPVDLG*
Ga0182012_102280311	3300014499	Bog	MNLEIHKPELVQRVNAHIQTGLFHDADELLEKALDALEGKTPAPASAAKRRRAAGRKSLVEVFAPLRGMNLDFSRNKSASRPVDLG*
Ga0182012_107119031	3300014499	Bog	LRGTRRRPPVTITLKGGLTMNLEIQKPELVQRVNAQIQSRHLHDADELIEQALDALDEKSPTAAAPAKDIEELFAPLRGLNLDFSRNQSTGRPVDL*
Ga0182024_101231243	3300014501	Permafrost	MNLEIHKPELVQRVNAQIQSRHLHDADELIEQALDALDEKSPAPASATERRRAVGRKSLVELSEPVRGLLTDEEVDRLFSRNQSASRPVDLG*
Ga0182024_108461913	3300014501	Permafrost	NAQLQSRHFQDVDELIEKALDEKTPAPAPDRRRAAGRKSLVEVFAPLRGMNLDFSRNKSASRPLDLG*
Ga0182024_109386342	3300014501	Permafrost	MNLEIQNPELVQRLDAHIRTGHFHDTEELIEKALDALDERVPAPESSAAERRHAAGRKSLVEVFAPLCGLNLDFSRNKNGSRPVDLE*
Ga0182030_105861192	3300014838	Bog	MNLEIHKPELVQRVNAQIQSRHLHDADELIEQALDALDEKSPAPAAAPAKDIEELFAPLRGLNLDFSRNPSSGRPVDL*
Ga0182030_106056582	3300014838	Bog	LKEGLTMNLEINKPELVQRVNTQIQSRRLHNADELIEQALDALDEKSPAPAAAPAKDIEELFAPLRGLNLDFSRNPSTGRPVDL*
Ga0182030_113765861	3300014838	Bog	MNLEIHKPELVQRVNAQFQSGHFHDADEFIEKALDALEGKTPAPASAAERRRVAGRKSLVEVFAPLRGMNLDFSRNESAGRPVDLG*
Ga0182027_107894623	3300014839	Fen	MNLEIHKPELVRRVNAHIQTGQFRDANEVLEKALDALEEKAPVPMSPTERRRAAGRKSLVELFAPLQGLNLDFSRNKSTGRPADLS*
Ga0187847_100545352	3300017948	Peatland	LVQRVNAHIRTGHFHDADELLEKALDALEEKALAPTSPARERRRAAGRKSLVELFAPLQGLNLDFSRNKSTGRPVDLS
Ga0187783_114162961	3300017970	Tropical Peatland	MNIEIHRPELVQRVNARIQTGQFHDADELIEKALDALDEKTDTSASPAPEKDIEQLFAPLRGLNLDFSRNPSTGRPVEL
Ga0187863_101182704	3300018034	Peatland	MNLEIHKPELVQRVNAHIRTGHFHDADDLLEKALDALEEKAPAPASPARERRRAAGRKSLVELFAPLQGLNLDFSRNKSAGRPVDLS
Ga0187855_105120811	3300018038	Peatland	IHKPELVQRVNAQIQSRHLHDADELLEQALDALDEKSPTPAPAAERRRAVGRKSLVEVFAPLRGLFTDEEVDSLFSRSRSTSRPVDLG
Ga0187887_103770372	3300018043	Peatland	MNLEIHKPELVQRVNAQIQSRQLHDADELIERALDALDEKSPAPVSAAERRRAAGRKSLVEVFAALRGLNLDFSRNKSTGRPVDLS
Ga0187887_108179861	3300018043	Peatland	MNLEIHKPELVQRVNAQIQNGRFHDADEVLEKALDALEEKESVPMSPEERRRAAGRKSLVELFAPLQGLNLDFSRNKSGGRPVDLS
Ga0187887_108536992	3300018043	Peatland	MTLEIHKPELVQRVNAHIQNGRFHDADEVLEKALDALEEKEPAPVSPAERRRAAGRKSLVELFAPLQGLNLDFSRNKSTGRPVDLS
Ga0187851_106267102	3300018046	Peatland	MNLEIHKPELVRRVNAHIRTGHFHDADDLLEKALDALEGKGPAPASVAERRRAAGRKSLVEIFAPLRGMNLDFSRNKSTGRPVDLS
Ga0181502_14404091	3300019242	Peatland	MNLEIHKPELVQRVNAHIQTGKFHDADEVLEKALDALEEKAPVPMSPAERRRAAGRKSLVELFAPLQGLNLDFSRNKSAGRPVDLS
Ga0210388_101378544	3300021181	Soil	MNLEIHKPGLVQRVNAQIQSGHFHDTDELIEKALDALEGKTPAPAAASAVERRRAAGRKSLVEVFAPLRGMNLDFSRNTSASRPVDLG
Ga0210388_108833232	3300021181	Soil	MNLEIHKPELVQRVNAQIQSRHLHDADELIEQALDALDEKSPAPAAAPAKDIEELFAPLRGLNLDFSRNPSTGRPVDL
Ga0213881_101124011	3300021374	Exposed Rock	MNLEIHKAELVQRVSAYIRTGQFNNTDELIEKALDALEEKTPVPKASAAERRRAAGRKSLVEVFAPLRGMNLDFTRNKSAGRPVDLG
Ga0213881_101195112	3300021374	Exposed Rock	VNIQIQNPELVERVHAHIQTGRFQDADDLIEKALDALDEKIPSLAPAHPSKDIEKLFAPLRGLNLEFGRNPSTGRPVDL
Ga0213876_100755812	3300021384	Plant Roots	MNLEIHKPELVQRVQAQIQTGQFRNTDELIEKALDALEEKTPLPKPSAAARRRAAGRKSLVEVFAPLRGMNLDFTGNKCAGRPVDLG
Ga0213876_101017123	3300021384	Plant Roots	MNLVIHKPELAQRVKAYIQTGQFNSTDELIEKALDALEGKTPAPPSSSVERRRAAGRKSLVEVFAPLRGMNLDFARNKSSGRPVDLG
Ga0213876_102694242	3300021384	Plant Roots	MNLVIHKPELAQRVSAYIRTGQFNSTDELIEKALDALEGRRPAPPSLAVERRRAAGRKSLVEVFAPLRGITLDFTRNRSSGGPVDLG
Ga0213876_108052001	3300021384	Plant Roots	RRVQAQIQSGHFNDTDELLEKALDALEGKTSAPASSVAERRHAAGRKSLVEVFAPLRGMNLDFSRNKSPSRPVDLG
Ga0210398_102831301	3300021477	Soil	MSLEIHKPELVQRVNAQIQSRRLHDADELIEQALDALDEKSPAPASATEHRRAVGRKSLVELSEPVRGLLTDEEVDRLFSRNQSASRPVDLG
Ga0212088_101211487	3300022555	Freshwater Lake Hypolimnion	HIQSGHFHDADELLEKALDALEEEASAPGSSATERRRAAGRKSLVEVFAPLRGMNVDFERSQSASRQVVPG
Ga0224556_10636382	3300024295	Soil	MNLEIRKPELVQRVNTEVQIRQLHDADELLEQALDALDEKSPAPASAAERRRLAGRKSLVDVFAPLRGLNLDFSRNQSTGRPVDLS
Ga0207667_111318422	3300025949	Corn Rhizosphere	MNLELHKPELVERVNAQIQIRHLHDADELIEQALDALDQQCPATASPSERRGAEGRKSLVEVFAPLRGMNLDFSRNQSPGRPVDLS
Ga0302145_100680151	3300028565	Bog	IQSGRFHDADELIEKAIHALEGKSPASIAGHLSPGRKSLVEVFAPLRGMNPDFSRNKSASRPVDLG
Ga0265338_106123082	3300028800	Rhizosphere	MSLEIHKPELVQRVNAQIQSRRLHDADELLEQALDALDEKSPAPVSAADRRRAAGRKSLVEVFAPLRGLNLDFSRNKSTGRPVDLS
Ga0302278_101246183	3300028866	Bog	MNLEIHKPALVQRVNAQLQSRHFHDLDELIEKALDALDEKTPAPPSSAAERRRAAGRKSLVEVFAPLRGMDLDFSRNKSASRPVDLG
Ga0302154_100108216	3300028882	Bog	VNAQIQSGRFHDADELIEKAIHALEGKSPASIAGHLSPGRKSLVEVFAPLRGMNPDFSRNKSASRPVDLG
Ga0247275_11547782	3300029817	Soil	MNLEIHKPELVQRVNAQIQSRHLHDADELIEQALDALDEKSPAPVAAPAEDIEELFAPLRGLNL
Ga0311327_106238512	3300029883	Bog	MTVLTMSLEIHKPELVQRVNAQIQSRHLRDADELLEQALDALDEKSPAPASAAERRRVAGRKSLVEVVAPLRGLNLDFSRNKSAGRPVDLS
Ga0311361_109910052	3300029911	Bog	MNLEIHKPELVERVNAHIQTGFFHDADELIEKALDALDEKTAAPAGCPPEKDIKELFAPLRGLNLDFNRNPSTGRPVEL
Ga0311361_111235521	3300029911	Bog	MNLEIHKPEPVQRVNAQIQSRQLHNADELIEQALEALDEKAPAPASAAERRRAAGRKSLVEVFAPLRGLNLDFSRNKSAGRPVDLS
Ga0311362_107404022	3300029913	Bog	MNLEIHKPELVQRVNAQFQSGHFHDADEFIEKALDALEGKTPAPASAAERRRVAGRKSLVEVFAPLRGMNLDFSRNESAGRPVDLG
Ga0311358_108915132	3300029915	Bog	LEIHKPELVQRVNAQIQSGRFHDADELIEKAIHALEGKSPASIAGHLSPGRKSLVEVFAPLRGMNPDFSRNKSASRPVDLG
Ga0311346_104472832	3300029952	Bog	MSLEIRKPELVQRVNAQIQIRHLHDADELLEQALDALDEKSPAPASAAERRRLAGRKSLVDVFAPLRGLNLDFSRNQSTGRPVDLS
Ga0311343_107629712	3300029953	Bog	MNLEIHKPALVQRVNAQLQSRHFHDLDELIEKALDALDEKTPAPPSSAAERRRAAGRKSLVEVFAPLRGMDLDFSRNKS
Ga0311331_102116221	3300029954	Bog	LQSRHFHDLDELIEKALDALDEKTPAPPSSAAERRRAAGRKSLVEVFAPLRGMDLDFSRNKSASRPVDLG
Ga0302194_103871732	3300030506	Bog	VQRVNAQIQSGRFHDADELIEKAIHALEGKSPASIAGHLSPGRKSLVEVFAPLRGMNPDFSRNKSASRPVDLG
Ga0302275_103457041	3300030518	Bog	HDLDELIEKALDALDEKTPAPPSSAAERRRAAGRKSLVEVFAPLRGMDLDFSRNKSASRPVDLG
Ga0311355_107590131	3300030580	Palsa	MNLEIHKPELVQRVNAHIQTGKFHNADEVLEKALEALEEKDALEEKAPVPMSPAERRRAVGRKSLVELFAPLQGLILDFSRNKSAGRPVDLS
Ga0265760_100896433	3300031090	Soil	EIHKPDLVRRVNAHIQTGHFHNADEVLEKALDALEEKAPVPMSPAERRRAEGRKSLVELFAPLQGLNLDFSRNKSTGRPVDLS
Ga0302325_100895715	3300031234	Palsa	MNLEVHKPELARRVQAHIQTGHFHDADEVREKALDALEEKATVPMSPAERRRAAGRKSLVELFAPLQGLNLDFSRNKSTGRPVNLT
Ga0302325_101637864	3300031234	Palsa	MQRHDNLEMEGLTMNLEIHKPELVERVNAQIRCRHLHDADELIEQALDALDEKSPAPAAAPAKDIEELFAPLRGLNLDFSRNPSTGRPIDL
Ga0302325_119412162	3300031234	Palsa	LKSISRSWYSAQFQSGHFHDADEFIEKALDALEGKTPAPASAAERRRVAGRKSLVEVFAPLRGMNLDFSRNESAGRPVDLG
Ga0302324_1002162294	3300031236	Palsa	KPELARRVQAHIQTGHFHDADEVREKALDALEEKATVPMSPAERRRAAGRKSLVELFAPLQGLNLDFSRNKSTGRPVNLT
Ga0302324_1018508141	3300031236	Palsa	MNLEIHKPELVERVNAQIRCRHLHDADELIEQALDALDEKSPAPAAAPAKDIEELFAPLRGLNLDFSRNPSTGRPVDL
Ga0302320_100534517	3300031524	Bog	MNLEIQKPELVQRVNAQIQSRHLHDADELIEQALDALDEKSPTAAAPAKDIEELFAPLRGLNLDFSRNQSTGRPVDL
Ga0302320_120508832	3300031524	Bog	EIHKPGLMQRVNAQIQRGCFHDVDELLEKALDALDEKTPAPPSSAAERRRAAGRKRLVEIFAPLRGQFTDEQVETPFSRNRSTARPVDLG
Ga0302326_113498592	3300031525	Palsa	MNLEIHKPELVERVNAQIRCRHLHDADELIEQALDALDEKSPAPAAAPAKDIEELFAPLRGLNLDFSRNPSTGRPIDL
Ga0302326_126956882	3300031525	Palsa	MNLEIHKPELVERVNAQIQSGHFHDADELIEKALDALEGKRPAPASAAERRSATGRKSLVEVFAPLRGMNLDFSRNKSAGRPVDLG
Ga0302326_135244721	3300031525	Palsa	MNLEIHKPELVQRVNAQFQSGHFHDADEFIEKALDALEGKTPAPASAAERRRVAGRKSLVEVFAPLRGMNLDFSRNESAG
Ga0265313_101761331	3300031595	Rhizosphere	MNLEIHKSELAERVNAQLQSRHFQDVDELIEKALDEKTPAPDRRRAAVRKSLVEVFAPLRGMNLDFSRNKSASRPLDLG
Ga0310686_1000045182	3300031708	Soil	MRHDNLEKEGRTMNLEIHNPELVQRVNAQIQSGHFHDADEFIEKALDALEVKPPAAVSAMERRRAAGRKSLVEVFAPLRGMNLDFSRNKSAGRPVDLG
Ga0310686_1018328383	3300031708	Soil	MNLEIHKPELVQRVNAQIQSRHLHNADELIEQALDALDEKSPAPAAAPAKDIEELFAPLRGLNLDFSRNPSTGRPVDL
Ga0310686_1057720684	3300031708	Soil	MNLEIHKPELVQRVNAQIQSRHLHDADELIEQALDALDEKSPAPASAAERRRAAGRKSLVEVFAPLRGLNLDFSRNQSTGRPVDLG
Ga0310686_1064964053	3300031708	Soil	MNLEIHKPDLVRRVNAHIQTGHFHNADEVLEKALDALEEKAPVPMSPAERRRAEGRKSLVELFAPLQGLNLDFSR
Ga0310686_1106296627	3300031708	Soil	YASAANNGSLQRNSAALAVTLNEGSDMNLEIHKPELVQRVNAHIQTGHFHDADEVLEKALDALEEKAPVPMSPAERRRVAGRKSLVELFAPLQGLNLDFSRNKSTGRPVDLS
Ga0310686_1113043571	3300031708	Soil	MNLEIHKPELVQRVNAQIQSRHLHDADELIEQALDALDEKSPAPASATESRRTVGRKSLVELSEPVRGLLTDEEVDRLFSRNQSASRPVDLG
Ga0310686_1173823382	3300031708	Soil	MNLEIRKPELVQRVNAQIQSRHLQDADELLQQALDALDEKSPAPASPAERRRAAGRKSLVEVFAPLRGLNLDFSRNKSTGRPVDLS
Ga0307476_110192463	3300031715	Hardwood Forest Soil	MNAQLRRRHFHDVDELIEKALDALDEKSPAPASAAERRRAAGRKSLVEVFAPLRGLNLDFSRNQSTGRPVDLS
Ga0302319_103041865	3300031788	Bog	KGPTMNLEIHKPELVERVNAHIQTGFFHDADELIEKALDALDEKTAAPAGCPPEKDIKELFAPLRGLNLDFNRNPSTGRPVEL
Ga0302319_113089391	3300031788	Bog	ESGASTMNLEIRKPELVQRVNTEVQIRQLHDADELLEQALDALDEKSPAPASAAERRRLAGRKSLVDVFAPLRGLNLDFSRNQSTGRPVDLS
Ga0302319_113966422	3300031788	Bog	MNLEIHKPELVQRVNAQIQSGHFHDADEFIEKALDALERKTPAPASAAERRRAAGRKSLVEVFAPLRGMSLDFSRNQSGSRPVDLG
Ga0348332_141832461	3300032515	Plant Litter	HKPDLVRRVNAHIQTGHFHNADEVLEKALDALEEKAPVPMSPAERRRAEGRKSLVELFAPLQGLNLDFSRNKSTGRPVDLS
Ga0335078_104020312	3300032805	Soil	MNLEIHRPELVERVNAHIQTGKFHDADEVLEKALDALEEKAPVPMSPAERRRAAGRKSLVELFAPLQGLNLDFSRDKSTGRPVDLS
Ga0335078_108767463	3300032805	Soil	MNLEIHKPELVERVNAHIQTGKFHDADEVLEKALDALEEKAPVPMSPAQRRRAAGRKSLVELFAPLQGLNLDFGRNKSTGRPVDLS
Ga0335081_118977733	3300032892	Soil	MSLEIHKPELVRRVNAHIQTGQFHDADELIEKALDALEEKTPAAPSSAAERRHAAGRKSLVEVFAPLRGMNLDFSRNKSASRPVDLA
Ga0335073_110035522	3300033134	Soil	MNLEIHKPELVQRVNAQIESRHLHDADELLEQALDALDENSPAPAKDIEELFAPLRGLNLDFSRNPPTGRPVDL
Ga0371490_11420891	3300033561	Peat Soil	VNLEIHNPELVHAHIQTGQFHDAEEVLEKALDALEEKAPVPMSPAERRRAAGRKSLVELFAPLQGLSLDFSRNKSTGRPVDLS
Ga0334790_198526_154_414	3300033887	Soil	MNLEIHKPELVRRVNAHIQTGQFRDANEVLEKALDALEEKAPVPMSPTERRRAAGRKSLVELFAPLQGLNLDFSRNKSTGRPADLS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096493

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences