Metagenome / Metatranscriptome Family F096641

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F096641
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	67 residues
Representative Sequence	ITAPAEDYLRESASPYTLPALIDALGEVTGQLSRAERQALGGIPPDPPACPPAGSNPAASF
Number of Associated Samples	81
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.96 %
% of genes near scaffold ends (potentially truncated)	94.23 %
% of genes from short scaffolds (< 2000 bps)	85.58 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (51.923 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.346 % of family members)
Environment Ontology (ENVO)	Unclassified (22.115 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.731 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.45% β-sheet: 0.00% Coil/Unstructured: 59.55%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF13424	TPR_12	2.88
PF03050	DDE_Tnp_IS66	1.92
PF00589	Phage_integrase	1.92
PF03328	HpcH_HpaI	1.92
PF01695	IstB_IS21	1.92
PF13546	DDE_5	1.92
PF01610	DDE_Tnp_ISL3	1.92
PF13683	rve_3	1.92
PF00690	Cation_ATPase_N	1.92
PF02899	Phage_int_SAM_1	1.92
PF00872	Transposase_mut	0.96
PF13535	ATP-grasp_4	0.96
PF13936	HTH_38	0.96
PF16859	TetR_C_11	0.96
PF08044	DUF1707	0.96
PF01548	DEDD_Tnp_IS110	0.96
PF14192	DUF4314	0.96
PF09924	LPG_synthase_C	0.96
PF13601	HTH_34	0.96
PF03466	LysR_substrate	0.96
PF13443	HTH_26	0.96
PF00561	Abhydrolase_1	0.96
PF00106	adh_short	0.96
PF02604	PhdYeFM_antitox	0.96
PF14690	zf-ISL3	0.96
PF12696	TraG-D_C	0.96
PF01979	Amidohydro_1	0.96
PF03551	PadR	0.96
PF13180	PDZ_2	0.96
PF01609	DDE_Tnp_1	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	1.92
COG0474	Magnesium-transporting ATPase (P-type)	Inorganic ion transport and metabolism [P]	1.92
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	1.92
COG2301	Citrate lyase beta subunit	Carbohydrate transport and metabolism [G]	1.92
COG3436	Transposase	Mobilome: prophages, transposons [X]	1.92
COG3464	Transposase	Mobilome: prophages, transposons [X]	1.92
COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	Carbohydrate transport and metabolism [G]	1.92
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	1.92
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	1.92
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.96
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.96
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.96
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.96
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.96
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.96
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.96
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.96
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.96
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.96
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.96
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.96
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.92 %
All Organisms	root	All Organisms	48.08 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.92 %
cellular organisms	root	All Organisms → cellular organisms	48.08 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.92 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.08 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	44.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	43.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	37.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.92 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	7.69 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	3.85 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.92 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.96 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.96 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.92 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	4.81 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	3.85 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	2.88 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.92 %
Kribbellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae	0.96 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.96 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.92 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	4.81 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	1.92 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.92 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.96 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	0.96 %
Acrocarpospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora	0.96 %
Dactylosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Dactylosporangium	0.96 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.92 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	4.81 %
unclassified Dactylosporangium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Dactylosporangium → unclassified Dactylosporangium	0.96 %
unclassified Kribbella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella	0.96 %
Micromonospora andamanensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora andamanensis	0.96 %
unclassified Arthrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter	0.96 %
Nocardia arthritidis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia arthritidis	0.96 %
Streptomyces mirabilis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces mirabilis	0.96 %
Acrocarpospora macrocephala	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora → Acrocarpospora macrocephala	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.92 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	4.81 %
Kribbella sp. VKM Ac-2500	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella → Kribbella sp. VKM Ac-2500	0.96 %
Arthrobacter sp. 9AX	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. 9AX	0.96 %
Dactylosporangium sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Dactylosporangium → unclassified Dactylosporangium → Dactylosporangium sp.	0.96 %
Micromonospora andamanensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora andamanensis	0.96 %
Nocardia arthritidis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia arthritidis	0.96 %
Streptomyces mirabilis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces mirabilis	0.96 %
Acrocarpospora macrocephala	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora → Acrocarpospora macrocephala	0.96 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100865667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora andamanensis	785	Open in IMG/M
3300002906\|JGI25614J43888_10116262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	697	Open in IMG/M
3300004092\|Ga0062389_104129441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	546	Open in IMG/M
3300004629\|Ga0008092_11287683	Not Available	606	Open in IMG/M
3300005162\|Ga0066814_10105667	Not Available	532	Open in IMG/M
3300005363\|Ga0008090_15727383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia arthritidis	519	Open in IMG/M
3300005435\|Ga0070714_100071484	All Organisms → cellular organisms → Bacteria	3000	Open in IMG/M
3300005435\|Ga0070714_101351756	Not Available	695	Open in IMG/M
3300005467\|Ga0070706_100373545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1328	Open in IMG/M
3300005764\|Ga0066903_104737152	Not Available	724	Open in IMG/M
3300005764\|Ga0066903_108069286	Not Available	540	Open in IMG/M
3300007788\|Ga0099795_10002197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4514	Open in IMG/M
3300009672\|Ga0116215_1305141	Not Available	692	Open in IMG/M
3300009683\|Ga0116224_10049813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	2045	Open in IMG/M
3300009698\|Ga0116216_10167570	All Organisms → cellular organisms → Bacteria	1350	Open in IMG/M
3300009698\|Ga0116216_10495398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	739	Open in IMG/M
3300009792\|Ga0126374_11048022	Not Available	643	Open in IMG/M
3300009824\|Ga0116219_10458897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	707	Open in IMG/M
3300010333\|Ga0134080_10205834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	854	Open in IMG/M
3300010361\|Ga0126378_11309814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	819	Open in IMG/M
3300010366\|Ga0126379_13196036	Not Available	548	Open in IMG/M
3300010366\|Ga0126379_13707945	Not Available	512	Open in IMG/M
3300010373\|Ga0134128_12660069	Not Available	551	Open in IMG/M
3300010376\|Ga0126381_100383124	All Organisms → cellular organisms → Bacteria	1954	Open in IMG/M
3300010379\|Ga0136449_101942554	Not Available	872	Open in IMG/M
3300011107\|Ga0151490_1342582	Not Available	597	Open in IMG/M
3300012202\|Ga0137363_10372308	Not Available	1186	Open in IMG/M
3300012209\|Ga0137379_10941570	Not Available	768	Open in IMG/M
3300012357\|Ga0137384_10022694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5123	Open in IMG/M
3300012359\|Ga0137385_10663067	Not Available	873	Open in IMG/M
3300012359\|Ga0137385_11511784	Not Available	535	Open in IMG/M
3300012971\|Ga0126369_11289691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	820	Open in IMG/M
3300016422\|Ga0182039_11524008	Not Available	609	Open in IMG/M
3300016422\|Ga0182039_11715441	Not Available	575	Open in IMG/M
3300016445\|Ga0182038_11533288	Not Available	599	Open in IMG/M
3300016445\|Ga0182038_11783855	Not Available	555	Open in IMG/M
3300017822\|Ga0187802_10379524	Not Available	558	Open in IMG/M
3300017926\|Ga0187807_1017023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2240	Open in IMG/M
3300017926\|Ga0187807_1046939	Not Available	1338	Open in IMG/M
3300017932\|Ga0187814_10093367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1109	Open in IMG/M
3300017937\|Ga0187809_10026945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces mirabilis	1833	Open in IMG/M
3300017937\|Ga0187809_10107289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	941	Open in IMG/M
3300017942\|Ga0187808_10429593	Not Available	606	Open in IMG/M
3300017955\|Ga0187817_10353366	Not Available	937	Open in IMG/M
3300017972\|Ga0187781_10881251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora → Acrocarpospora macrocephala	651	Open in IMG/M
3300017975\|Ga0187782_11477462	Not Available	535	Open in IMG/M
3300017999\|Ga0187767_10163558	Not Available	677	Open in IMG/M
3300018007\|Ga0187805_10041743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2056	Open in IMG/M
3300018058\|Ga0187766_10459437	Not Available	851	Open in IMG/M
3300018058\|Ga0187766_10721706	Not Available	690	Open in IMG/M
3300018058\|Ga0187766_11310819	Not Available	528	Open in IMG/M
3300018060\|Ga0187765_10756066	Not Available	644	Open in IMG/M
3300018064\|Ga0187773_11227279	Not Available	505	Open in IMG/M
3300018085\|Ga0187772_10995406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	612	Open in IMG/M
3300020581\|Ga0210399_10125344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2112	Open in IMG/M
3300021401\|Ga0210393_10568729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	926	Open in IMG/M
3300021401\|Ga0210393_10779834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	778	Open in IMG/M
3300024288\|Ga0179589_10287065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	738	Open in IMG/M
3300026879\|Ga0207763_1027138	Not Available	544	Open in IMG/M
3300026945\|Ga0207743_1028952	Not Available	562	Open in IMG/M
3300026981\|Ga0207822_1012089	Not Available	972	Open in IMG/M
3300027047\|Ga0208730_1011019	Not Available	971	Open in IMG/M
3300027575\|Ga0209525_1147029	Not Available	540	Open in IMG/M
3300027625\|Ga0208044_1174266	Not Available	586	Open in IMG/M
3300027662\|Ga0208565_1001801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12177	Open in IMG/M
3300027812\|Ga0209656_10477410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	548	Open in IMG/M
3300027895\|Ga0209624_10823843	Not Available	609	Open in IMG/M
3300030494\|Ga0310037_10050069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1988	Open in IMG/M
3300030659\|Ga0316363_10053419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1919	Open in IMG/M
3300030707\|Ga0310038_10061637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	2070	Open in IMG/M
3300031543\|Ga0318516_10698772	Not Available	576	Open in IMG/M
3300031719\|Ga0306917_11135523	Not Available	608	Open in IMG/M
3300031724\|Ga0318500_10153297	Not Available	1085	Open in IMG/M
3300031724\|Ga0318500_10599251	Not Available	558	Open in IMG/M
3300031736\|Ga0318501_10343081	Not Available	801	Open in IMG/M
3300031770\|Ga0318521_10260088	Not Available	1015	Open in IMG/M
3300031771\|Ga0318546_10418262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	937	Open in IMG/M
3300031821\|Ga0318567_10757898	Not Available	550	Open in IMG/M
3300031833\|Ga0310917_10912766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	591	Open in IMG/M
3300031880\|Ga0318544_10115997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1016	Open in IMG/M
3300031897\|Ga0318520_10633355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	666	Open in IMG/M
3300031910\|Ga0306923_11063831	Not Available	874	Open in IMG/M
3300031910\|Ga0306923_11566016	Not Available	686	Open in IMG/M
3300031910\|Ga0306923_11743489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	642	Open in IMG/M
3300031946\|Ga0310910_11244560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	576	Open in IMG/M
3300031959\|Ga0318530_10412782	Not Available	560	Open in IMG/M
3300032035\|Ga0310911_10842651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Dactylosporangium → unclassified Dactylosporangium → Dactylosporangium sp.	529	Open in IMG/M
3300032043\|Ga0318556_10263502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	900	Open in IMG/M
3300032076\|Ga0306924_10466759	Not Available	1441	Open in IMG/M
3300032160\|Ga0311301_10297914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2587	Open in IMG/M
3300032160\|Ga0311301_11326134	Not Available	906	Open in IMG/M
3300032160\|Ga0311301_12537999	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300032174\|Ga0307470_10588427	Not Available	830	Open in IMG/M
3300032770\|Ga0335085_10025139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8383	Open in IMG/M
3300032770\|Ga0335085_10041696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6288	Open in IMG/M
3300032770\|Ga0335085_11102156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. 9AX	850	Open in IMG/M
3300032770\|Ga0335085_11809923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	625	Open in IMG/M
3300032782\|Ga0335082_10041058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4851	Open in IMG/M
3300032783\|Ga0335079_10713350	Not Available	1047	Open in IMG/M
3300032783\|Ga0335079_11370203	Not Available	704	Open in IMG/M
3300032954\|Ga0335083_11053633	All Organisms → cellular organisms → Bacteria → Terrabacteria group	637	Open in IMG/M
3300032955\|Ga0335076_10010366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9396	Open in IMG/M
3300032955\|Ga0335076_10110355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella → Kribbella sp. VKM Ac-2500	2678	Open in IMG/M
3300032955\|Ga0335076_10345123	Not Available	1375	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.42%
Aquatic	Environmental → Aquatic	10.58%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.42%
Freshwater	Environmental → Aquatic → Freshwater	10.58%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.65%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	19.23%
Loam	Environmental → Terrestrial → Soil → Loam	11.54%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.58%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	19.23%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	8.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.92%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.35%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	13.46%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	10.58%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	8.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.65%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	8.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.85%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.92%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004629	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A01 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300026879	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 50 (SPAdes)	Environmental	Open in IMG/M
3300026945	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 55 (SPAdes)	Environmental	Open in IMG/M
3300026981	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 67 (SPAdes)	Environmental	Open in IMG/M
3300027047	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF042 (SPAdes)	Environmental	Open in IMG/M
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1008656671	3300002245	Forest Soil	ESASPYSLPALIDALGAVTDQLSHAERQALDSIPPDMPACDPADRDPANDTF*
JGI25614J43888_101162621	3300002906	Grasslands Soil	DVMLMLLDVHAVLDHLYLDGTRPRATGPAEDYLRESDSPYTLPALISALDEVINQLTGAMRAAVLAIPGPGHDHPGPVSF*
Ga0062389_1041294411	3300004092	Bog Forest Soil	PYSLPALIDALGEVTSQLSRAERQALDRIPPDMPACDPADRDPANDTF*
Ga0008092_112876831	3300004629	Tropical Rainforest Soil	QITAPAEDYLRESASPYSLPALIDALGEATGQLSRAERQALGSIPPGPPASEPADSNPAVSF*
Ga0066814_101056671	3300005162	Soil	PEITSPAEDYLHESASPYSLPALIDALDEVTTQLSHAERKALHGIPPDMPACDPAGRDPAHDTF*
Ga0008090_157273831	3300005363	Tropical Rainforest Soil	LIDVHAVLDHLYLDGTQPQITAPAEHYLHQSASPYTLPALIDALAAATGQLSRAERQALGSIPPGPPAPEPAGSNPAASF*
Ga0070714_1000714843	3300005435	Agricultural Soil	MLIDIHAVLDHLYLDGTQPEITAPAGDYLRESASPYTLAALIDAIGEATSQLSRAERQALDGIPPDPPASEPAGRNPAASS*
Ga0070714_1013517561	3300005435	Agricultural Soil	VLDHLYLDGTQPQITAPAEDYLRESASPYSLPALIDALGEAAGQLSRAQRQALDSIPPHPPASGPADSNPAASF*
Ga0070706_1003735451	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	ITAPAEDYLRESASPYTLPALIDALGEVTGQLSRAERQALGGIPPDPPACPPAGSNPAASF*
Ga0066903_1047371521	3300005764	Tropical Forest Soil	YLRESASPYSLPALIDALGEATDQLSRAERHALSGIPPGPPAPGPAGSNPASF*
Ga0066903_1080692862	3300005764	Tropical Forest Soil	PAEDYLRESASPYSLPALIEALREATDRLSRAECQALGGIPPGPPASEPADGNPAASF*
Ga0099795_100021974	3300007788	Vadose Zone Soil	DHLYLDGTQPEITSPAEDYLRESASPYTLPALIDARGAVTGQLSRAEREALHGIPPDLPACDPADRDPAHDTF*
Ga0116215_13051411	3300009672	Peatlands Soil	DLILMLIDVHAVLDHLYLDGTQPQITSPAEDYLRESASPYSLPALIDALCEVTDQLSRAERQALDSIPPSPPACEPASSNPAASF*
Ga0116224_100498132	3300009683	Peatlands Soil	DHLYLDGTQPQITSPAEDYLRESASPYNLPALIAALGEVTDQLSRAESEALGSIPPGPPPCEPAGSNPAASF*
Ga0116216_101675702	3300009698	Peatlands Soil	DLILMLIDVHAVLDHLYLDGTQPQITSPAEDYLRESASPYTLPALIDALGAVTGQLSHAERQALDSIPPDMPACDPADRDPANDTF*
Ga0116216_104953981	3300009698	Peatlands Soil	IRAVLDHLYLDGTQPEITSPAEDYLRESASPYSLPALIDALDEVTTQLSHAEREAFHGIPPDMPARDPAGRDLANDTF*
Ga0126374_110480221	3300009792	Tropical Forest Soil	MPTAASPYTLPALIDALAEATGQLSRAERHALSAIPPDPPAAEPARGNPAASF*
Ga0116219_104588971	3300009824	Peatlands Soil	LILMLIDVHAVLDHLYLDGTQPEITSPAEDCLRESTSPYSLPALIDALGEVTDQLSRAERQALDGIPPGPPTCEPASSNPAASF*
Ga0134080_102058341	3300010333	Grasslands Soil	PEITSPAEDYLRESASPYTLPALIDALDEVTTQLSHAEREAFHGIPPDMPAFDPPGRDPANDTF*
Ga0126378_113098141	3300010361	Tropical Forest Soil	ITAPAEDYLLQSASPYTLPALIGALCQVTDQLSRAERQALGSIPPGPPAREPADSNPAASF*
Ga0126379_131960361	3300010366	Tropical Forest Soil	DVHAVLDHLYLDGTQPEITAPAEDYLHQSASPYSLPALIEALGEVTGQLSHAERQALGSIPPGPPASEPADGNPAASF*
Ga0126379_137079451	3300010366	Tropical Forest Soil	DLILLLIDVHAVLDHLYLDGTQPEITAPAEDYLRESASPYTLPALIDALGAAAGQLSHAERHALSAIPPGPPAAGPAAGNPAASF*
Ga0134128_126600691	3300010373	Terrestrial Soil	ESASPYSLPALIEALSQVTGQLSRAERQALGGIPPDPPAPEPAISSVTASF*
Ga0126381_1003831241	3300010376	Tropical Forest Soil	MPTAASPYTLPALIDALAEATGQLSRAERHALSAIPPGPPAAGPAAGNPAASF*
Ga0136449_1019425541	3300010379	Peatlands Soil	VHAVLDHLYLDGTQPQITSPAEDYLRESASPYSLPALIDALCEVTDQLSRAERQALDSIPPSPPACEPASSNPAASF*
Ga0151490_13425821	3300011107	Soil	LDGTRPQTTRPAGDYLRESSSPYTLPALIEALGEVINMLSHAEREALHGIPPGPPACQPPDGDPAACSF*
Ga0137363_103723081	3300012202	Vadose Zone Soil	DVHAVLDHLYLDGTQPQITSPAEDYLRESASPYTLPALIDALGEVTDQLSGAERRAPGGIPPDPAVCEPAAGDPAASF*
Ga0137379_109415701	3300012209	Vadose Zone Soil	ITSPAQDYLRESASPYSLPALIDALGEATGQLSHAERHALGSIPPGPPAAEPAGGNPAASF*
Ga0137384_100226948	3300012357	Vadose Zone Soil	ILMLTDVHAVLDHLYLDGTQPQITSPAEDYLRESASPYTLPALIDALGEVTGQLSHAEREALHGIPPDLPARDPAHDTF*
Ga0137385_106630672	3300012359	Vadose Zone Soil	LYLDGTQPQITSPAEDYLRESASPYSLPALIDAPGAVTGQLSHAEREALHGIPPDLPACDPAGRDPARDTF*
Ga0137385_115117841	3300012359	Vadose Zone Soil	ASPCTLPALIDALGEATGQLSRAERQALGAIPPGPPASEPADGDPAASF*
Ga0126369_112896912	3300012971	Tropical Forest Soil	MLIDVHAVLDHLYLDGTQPQITAPAEDYLRQSASPYTLPALIDALGQVTDQLSRAERQALGGIPPDPPASEPAHGNPAASF*
Ga0182039_115240081	3300016422	Soil	SPYTLPALIDALGEATGQLSHAEHQALGSIPPDPAAGGNPAASF
Ga0182039_117154412	3300016422	Soil	APAEHYLRESASPCILAALIDALGAVTGQLSRAERHAPGSIPRGPPAAEPAGSNPAASF
Ga0182038_115332881	3300016445	Soil	DVHAVLDHLYLDGTQPAITGPAEEYLRASASPYTLPALIDALGAATGQLSHAEHQALSSIPADPPAPEPARSNPAASF
Ga0182038_117838551	3300016445	Soil	MALISQPGSDYQLAEITAPAEDYLRESASPYTLPGLIDALGEATDQLSRAERQALGSIPPGPPASEPAGGNPAASF
Ga0187802_103795241	3300017822	Freshwater Sediment	RDLILMLIDVHAVLDHLYLDGTQPQITSPAEDYLRESASPYTLPALIDALGEVTDQLSHAERQALDSIPPGAPACEPASSNPAASF
Ga0187807_10170233	3300017926	Freshwater Sediment	LLIDVHAVLDHLYLDGTQPEITSPAEDYLRESASPYSLPALIDALGEVTDQLSRAERQALDGIPPGPPTCESAGSNPAASF
Ga0187807_10469391	3300017926	Freshwater Sediment	AVLDHLYLDGTQPQITSPAEDYLRESASPYSLPALIDALGEVTNQLSHAERQALDGVPPGPPACEPASTNPAASF
Ga0187814_100933674	3300017932	Freshwater Sediment	TSPAEDYLRESASPYSLPALIDALGEVTDQLSRAERQALDGISPGPPACEPAGSNPAASF
Ga0187809_100269451	3300017937	Freshwater Sediment	DGTQPQITSPAEDYLRESASPYSLPALIDALGEVTGQLTRAERQALDGIPPGPPACQPASSNPAASF
Ga0187809_101072891	3300017937	Freshwater Sediment	APAEDYLRESASPYTLPALIDALGEATDHLGHAERHALSAIPPGPPAAEPAGGNPAASF
Ga0187808_104295931	3300017942	Freshwater Sediment	AEDYLRESASPYSLPALIDALGEVTDQLSRAERQALDGIPPGPPTCESAGSNPAASF
Ga0187817_103533662	3300017955	Freshwater Sediment	DHLYLDGTQPEITSPAEDYLRESASPYSLPALIDALGEVTDQLSRAERQALDGIPPGPPTCESAASNPAASF
Ga0187781_108812512	3300017972	Tropical Peatland	RESASPYTLPALIDALGAVTDHLSRAERHALGSIPPDPPASEPAGSNPAASF
Ga0187782_114774621	3300017975	Tropical Peatland	QPGITAPAEDYLRESASPYTLPALIDALGQVTDQLSRAERQALGGIPPDPPACQPAGSDPAATF
Ga0187767_101635582	3300017999	Tropical Peatland	LIDVHAVLDHLYLDGTQPQITAPAEDYLRESASPYTLPALIDALGEVTDHLSHAERHALGSIPPGPPAPGPARSNPAASF
Ga0187805_100417432	3300018007	Freshwater Sediment	TQPEITSPAEDYLRESASPYSLPALIDALGEVTGQLSRAERQALDGIPPGPPACEPASRNPAASF
Ga0187766_104594371	3300018058	Tropical Peatland	DLILMLIDVHAVLDHLYLDGTQPQITAPAEHYLRESASPYTLPALIDALGEVTDHLSRAERHALDGIPPGPPAPGPARSNPAASF
Ga0187766_107217061	3300018058	Tropical Peatland	ASPYSLPALIDALGEATDRLSRAEREALASIPPGPPACQPSGGTPAGSF
Ga0187766_113108191	3300018058	Tropical Peatland	DGTQPEITSPAEDYLRESASPYSLPALIDALGEVTGQLSHAERQALGGIPPDPPARQPAGSNPAASS
Ga0187765_107560661	3300018060	Tropical Peatland	SASPYTLPALIDALGEATGQLSHAERQALSSIPPDLPASEPARGNPAASF
Ga0187773_112272791	3300018064	Tropical Peatland	LRESASPYSLPALIDALGEATSQLSHAERQALRSIPPGPTAPEPARGNPAASF
Ga0187772_109954062	3300018085	Tropical Peatland	PTASPYTLPALIDALGEATGQLSHAERQALGGIPPDPPARQPASSNPAASF
Ga0210399_101253443	3300020581	Soil	TQPQITAPAEDYLRESASPYSLPALIEALGEVTGQLSRAERQALSGIPPAPEPARSNPAASF
Ga0210393_105687291	3300021401	Soil	MLIDVHAVLDHLYLDGTQPQITSPAEDYLRESASPYTLPALIDALGEVTGQLSRAERQALDSIPPGPPAC
Ga0210393_107798341	3300021401	Soil	VHAVLDHLYLDGTQPQITSPAEDYLRESASPYTLPALIDALGEVTGQLSRAERQALGSIPPGPPAREPAGSNPAASF
Ga0179589_102870651	3300024288	Vadose Zone Soil	RDLILMLTDVHAVLDHLYLDGTQPEITSPAEDYLRESASPYTLPALIDTLGEVTGQLSRAERRALDGIPPDPAACEPAGSDPAASF
Ga0207763_10271381	3300026879	Tropical Forest Soil	IPAPAEDYLRESASPCTLPALIDALGEVTDHLSYAERHALDGIPPAPGPADTNPAASF
Ga0207743_10289521	3300026945	Tropical Forest Soil	DHLYLDGTQPEITAPAEDYLRESASPCTLPALIDALGEVTDHLSYAERHALDGIPPAPGPADTNPAASF
Ga0207822_10120891	3300026981	Tropical Forest Soil	RPEITSPAEDYLRESASPCTLPALIDALGEVTDHLSYAERHALDGIPPAPGPADTNPAAS
Ga0208730_10110191	3300027047	Forest Soil	LRESASPYSLPALIDALGEVTGQLSRAERQALHDIPPGPPAGEPASSNPAASF
Ga0209525_11470291	3300027575	Forest Soil	QPEITSPAEDYLRESASPYSLPALINALGEVTGHLSRAERQALDRIPPSPPACEPASSNPAASF
Ga0208044_11742661	3300027625	Peatlands Soil	QPQITSPAEDYLRESASPYNLPALIAALGEVTGQLSRAERQALGSIPPSPPPCEPARSNPAASF
Ga0208565_10018011	3300027662	Peatlands Soil	TQPQITSPAEDYLRESASPYNLPALIAALGEVTDQLSRAERQALDGIPPGPPPCEPASSNPAASF
Ga0209656_104774101	3300027812	Bog Forest Soil	PQTTRPAEDYLRESSSPYTLPALIEALGEVINMLSHAEREALHGIPPGPPACQPPDSDPAACSF
Ga0209624_108238431	3300027895	Forest Soil	TRDLILMLTDVHAVLDHLYLDGTQPEITSPAEDYLRESASPYSLPALINALGEVTGHLSRAERQALDRIPPSPPACEPASSNPAASF
Ga0310037_100500691	3300030494	Peatlands Soil	TRDLILMLIDVHAVLDHLYLDGTQPQITSPAEDYLRESASPYTLPALIDALGAVTGQLSHAERQALDSIPPDMPACDPADRDPANDTF
Ga0316363_100534191	3300030659	Peatlands Soil	PAEDYLRESASPYNLPALIAALGEVTDQLSRAESEALGSIPPGPPPCEPAGSNPAASF
Ga0310038_100616372	3300030707	Peatlands Soil	DGTQPQITSPAEDYLRESASPYNLPALIAALGEVTDQLSRAESEALGSIPPGPPPCEPAGSNPAASF
Ga0318516_106987722	3300031543	Soil	VLDHLYLDGTQPQITAPAEAYLRESASPYSLPALIEALGDVINMLSHAERGALHGIPPDTPACDPADGDLAHGTF
Ga0306917_111355231	3300031719	Soil	TAPAEDYLRASASPYTLPALIDALGEATGQLSHAEHQALGSIPPDPAAGGNPAASF
Ga0318500_101532971	3300031724	Soil	ITGPAEEYLRASASPYTLPALIDALGAATGQLSHAEHQALSSIPADPPAPEPARSNPAAS
Ga0318500_105992511	3300031724	Soil	LLLTDVHAVLDHLHLDGTQPQITAPAEHYLRESASPCILAALIDALGAVTGQLSRAERHAPGSIPRGPPAAEPAGSNPAASF
Ga0318501_103430811	3300031736	Soil	GEVTGQLSHAESHALGSIPPDLPARDPASSNPAASF
Ga0318521_102600882	3300031770	Soil	YTLPALIDALGAATGQLSHAEHQALSSIPADPPAPEPARSNPAASF
Ga0318546_104182622	3300031771	Soil	LILMLIDVHAVLDHLYLDGTQPQITAPAEHYLRESASPCILAALIDALGAVTGQLSRAERHAPGSIPRGPPAAEPAGSNPAASF
Ga0318567_107578981	3300031821	Soil	LTDVHAVLDHLHLDGTQPQITAPAEHYLRESASPCILAALIDALGAVTGQLSRAERHAPGSIPRGPPAAEPAGSNPAASF
Ga0310917_109127662	3300031833	Soil	ASASPYSLPALIEALGEVTGQLSHAESHALGSIPPDLPARDPASSNPAASF
Ga0318544_101159971	3300031880	Soil	APAEDYLRESASPYTLPGLIDALGEATDQLSRAERQALGSIPPEPADSNPAASF
Ga0318520_106333551	3300031897	Soil	RESASPCILAALIDALGAVTGQLSRAERHAPGSIPRGPPAAEPAGSNPAASF
Ga0306923_110638311	3300031910	Soil	LILMLTDVHAVLDHLYLDGTQPQITAPAEDYLLQSASPYTLPALIDALGEATGQLSRAEHHALGGIPPGPPAPEPARSNPAASF
Ga0306923_115660162	3300031910	Soil	YTLPALIDALGEVTGQLSHAEGQALGSIPPDPPAPGPAGSNPAASF
Ga0306923_117434891	3300031910	Soil	NLRESASPCILAALIDDLGAVTGQLSRAERHAPGSIPRGPPAAEPAGSNPAASF
Ga0310910_112445601	3300031946	Soil	MLIDVHAVLDHLYLDGTQPAITGPAEEYLRASASPYTLPALIDALGAATGQLSHAEHQALSSIPADPPAPEPARSNPAASF
Ga0318530_104127821	3300031959	Soil	LMLTDVHAVLDHLYLDGTQPEITAPAEAYLRESASPYSLPALIEALGDVINMLSHAEREALHGIPPDMPACDPADGDLAHGTF
Ga0310911_108426512	3300032035	Soil	ILMLTDVHAVLDHLHLDGTQPQITGPAEEYLRASASPYTLPALIDALGAATGQLSHAEHQALSSIPADPPAPEPARSNPAASF
Ga0318556_102635022	3300032043	Soil	LILLLTDVHAVLDHLDLDGTQPQITAPAEHYLRESASPCILAALIDALGAVTGQLSRAERHAPGSIPRGPPAAEPAGSNPAASF
Ga0306924_104667592	3300032076	Soil	LYLDGTQPAITGPAEEYLRASASPYTLPALIDALGAATGQLSHAEHQALSSIPADPPAPEPARSNPAASF
Ga0311301_102979141	3300032160	Peatlands Soil	RDLILMLIDVHAVLDHLYLDGTQPQITSPAEDYLRESASPYTLPALIDALGAVTGQLSHAERQALDSIPPDMPACDPADRDPANDTF
Ga0311301_113261342	3300032160	Peatlands Soil	TRDLILMLIDVHAVLDHLYLDGTQPQITSPAEDYLRESASPYSLPALIDALCEVTDQLSRAERQALDSIPPSPPACEPASSNPAASF
Ga0311301_125379992	3300032160	Peatlands Soil	MLIDVHAVLDHLYLDGTQPEITSPAEDYLRESASPYSLPALIDALGEVTDQLSRAERQALDGIPPGPPLVVSG
Ga0307470_105884272	3300032174	Hardwood Forest Soil	PYTLPALIDALGEVTDQLSRAERRALDGIPPDPAVCEPAGGDPAASF
Ga0335085_100251391	3300032770	Soil	LPALIDALGEATGQLSHAERQALGSIPPDPPAPGPADGNPAASF
Ga0335085_100416961	3300032770	Soil	PAQDYLRESASPYTLPALIDALGAVTGQLSHAERQALGSIPPDSPAHGPAGSNPAASF
Ga0335085_111021561	3300032770	Soil	DTTLMLVDVHAVLDHLYLDGTRPQATRPAEDYLRESSSPYTLPALIEALGEVINMLSHAEREAHHGIPPGPPACQPPDSDPAACSF
Ga0335085_118099231	3300032770	Soil	APAEDYLLQSASPCTLPALTDAPGEATSQLSHAERQALGSIPPDPAADGNLAASS
Ga0335082_100410582	3300032782	Soil	MLIDVHAVLDHLYLDGTQPEITAPAEDYLRESASPYSLPALIDALGEATGQLSHAERQALGSIPPDPPAPEPARGNPAASF
Ga0335079_107133502	3300032783	Soil	VHAVLDHLYLDGTQPQITAPAEHYLRESASPYTLPALIDALSEVTGHLSRAERQALDDIPPDPPACEPAGSNPAASF
Ga0335079_113702031	3300032783	Soil	MLTDVHAVLDHLYLDGTQPQITAPAEDYLHESASPYTLPALIDALSEATGQLIRAERQALGSIPPGPPAPEPAVSNPAASF
Ga0335083_110536332	3300032954	Soil	ILLLTDVHAVLDHFYLDGTQPQITAPAEDYLRESASPYTLAALIEALGAVTDQLSRAERQALDGIPAEPPACEPADINPAASF
Ga0335076_100103661	3300032955	Soil	EITAPAEAYLRESASPYSLPALIEALGDVINMLSHAEREALHGIPPDMPACDPADGDLAHGTF
Ga0335076_101103551	3300032955	Soil	IDVHAVLDHLYLDGTQPQITAPAEDYLRESASPYTLPALIDALGQATDRLSRAERHALGGIPPGPSAPDPAGSNPAASF
Ga0335076_103451232	3300032955	Soil	VPALIDALSEATGQLSHAEHHALSNTPPDPTTPEPAGGNPAATF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096641

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences