Metagenome / Metatranscriptome Family F096663

Basic Information
Family ID	F096663
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	43 residues
Representative Sequence	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDP
Number of Associated Samples	91
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	93.62 %
% of genes near scaffold ends (potentially truncated)	44.23 %
% of genes from short scaffolds (< 2000 bps)	40.38 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Most Common Taxonomy
Group	Unclassified (76.923 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine (22.115 % of family members)
Environment Ontology (ENVO)	Unclassified (52.885 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (58.654 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.72% β-sheet: 8.33% Coil/Unstructured: 56.94%
Feature Viewer

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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF04488	Gly_transf_sug	0.96
PF01391	Collagen	0.96
PF01464	SLT	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3774	Mannosyltransferase OCH1 or related enzyme	Cell wall/membrane/envelope biogenesis [M]	0.96

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.92 %
All Organisms	root	All Organisms	23.08 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.92 %
Viruses	superkingdom	All Organisms → Viruses	22.12 %
cellular organisms	root	All Organisms → cellular organisms	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.46 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	8.65 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.46 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	8.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.46 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	8.65 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.46 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8.65 %
Neisseriales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.46 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	8.65 %
Neisseriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.46 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	8.65 %
Eikenella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Eikenella	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.46 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	8.65 %
unclassified Eikenella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Eikenella → unclassified Eikenella	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.46 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	8.65 %
Eikenella sp. HMSC061C02	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Eikenella → unclassified Eikenella → Eikenella sp. HMSC061C02	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003393\|JGI25909J50240_1072783	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	693	Open in IMG/M
3300003499\|JGI25930J51415_1030502	Not Available	975	Open in IMG/M
3300004792\|Ga0007761_11363718	Not Available	515	Open in IMG/M
3300005517\|Ga0070374_10119522	All Organisms → Viruses → Predicted Viral	1371	Open in IMG/M
3300005582\|Ga0049080_10018358	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2438	Open in IMG/M
3300005584\|Ga0049082_10076137	All Organisms → Viruses → Predicted Viral	1177	Open in IMG/M
3300007617\|Ga0102897_1072727	All Organisms → Viruses → Predicted Viral	1076	Open in IMG/M
3300007621\|Ga0102872_1204678	Not Available	518	Open in IMG/M
3300007622\|Ga0102863_1141828	Not Available	707	Open in IMG/M
3300007954\|Ga0105739_1018908	All Organisms → Viruses → Predicted Viral	1403	Open in IMG/M
3300007974\|Ga0105747_1287023	Not Available	555	Open in IMG/M
3300008262\|Ga0114337_1186067	Not Available	861	Open in IMG/M
3300008953\|Ga0104241_1001518	All Organisms → Viruses → Predicted Viral	1795	Open in IMG/M
3300008953\|Ga0104241_1010252	Not Available	643	Open in IMG/M
3300008999\|Ga0102816_1027530	All Organisms → Viruses → Predicted Viral	1654	Open in IMG/M
3300009152\|Ga0114980_10479196	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	710	Open in IMG/M
3300010354\|Ga0129333_10328176	Not Available	1365	Open in IMG/M
3300012663\|Ga0157203_1010433	All Organisms → Viruses → Predicted Viral	1543	Open in IMG/M
3300012663\|Ga0157203_1049941	Not Available	567	Open in IMG/M
3300012715\|Ga0157599_1113661	Not Available	502	Open in IMG/M
3300012731\|Ga0157616_1235883	Not Available	687	Open in IMG/M
3300013005\|Ga0164292_10493216	Not Available	803	Open in IMG/M
3300013295\|Ga0170791_15321425	Not Available	548	Open in IMG/M
3300019784\|Ga0181359_1194286	Not Available	659	Open in IMG/M
3300020141\|Ga0211732_1001765	All Organisms → Viruses → Predicted Viral	1125	Open in IMG/M
3300020141\|Ga0211732_1001816	Not Available	581	Open in IMG/M
3300020161\|Ga0211726_10949541	Not Available	504	Open in IMG/M
3300020493\|Ga0208591_1016619	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	966	Open in IMG/M
3300021963\|Ga0222712_10368220	Not Available	882	Open in IMG/M
3300022752\|Ga0214917_10228206	Not Available	889	Open in IMG/M
3300024346\|Ga0244775_10003330	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	17094	Open in IMG/M
3300027365\|Ga0209300_1022463	All Organisms → Viruses → Predicted Viral	1373	Open in IMG/M
3300027380\|Ga0208432_1009891	All Organisms → Viruses → Predicted Viral	1788	Open in IMG/M
3300027387\|Ga0208311_1127016	Not Available	547	Open in IMG/M
3300027468\|Ga0209247_1028262	Not Available	779	Open in IMG/M
3300027563\|Ga0209552_1035064	All Organisms → Viruses → Predicted Viral	1463	Open in IMG/M
3300027644\|Ga0209356_1001711	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	8530	Open in IMG/M
3300027689\|Ga0209551_1193549	Not Available	625	Open in IMG/M
3300027707\|Ga0209443_1150310	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	848	Open in IMG/M
3300027736\|Ga0209190_1044993	Not Available	2269	Open in IMG/M
3300027754\|Ga0209596_1262138	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	704	Open in IMG/M
3300027763\|Ga0209088_10099512	All Organisms → Viruses → Predicted Viral	1335	Open in IMG/M
3300027763\|Ga0209088_10388694	Not Available	541	Open in IMG/M
3300027797\|Ga0209107_10133263	All Organisms → Viruses → Predicted Viral	1289	Open in IMG/M
3300027971\|Ga0209401_1002143	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	12867	Open in IMG/M
3300028025\|Ga0247723_1025058	All Organisms → Viruses → Predicted Viral	1949	Open in IMG/M
3300028112\|Ga0256335_1155399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Eikenella → unclassified Eikenella → Eikenella sp. HMSC061C02	596	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	97.12%
Terrestrial	Environmental → Terrestrial	2.88%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	67.31%
Marine	Environmental → Aquatic → Marine	29.81%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	2.88%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	30.77%
Lentic	Environmental → Aquatic → Freshwater → Lentic	29.81%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	22.12%
Coastal	Environmental → Aquatic → Marine → Coastal	5.77%
Lotic	Environmental → Aquatic → Freshwater → Lotic	2.88%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	2.88%
River	Environmental → Aquatic → Freshwater → River	1.92%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.96%
Ice	Environmental → Aquatic → Freshwater → Ice	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	30.77%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	24.04%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	22.12%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	5.77%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	3.85%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	2.88%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	2.88%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	1.92%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.96%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	22.12%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	20.19%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	10.58%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	10.58%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	7.69%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	4.81%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	2.88%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	1.92%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	1.92%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	1.92%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	1.92%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	1.92%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	1.92%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment	0.96%
Lake	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake	0.96%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.96%
Freshwater And Marine	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine	0.96%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.96%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater	0.96%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.96%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.96%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.96%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental	Open in IMG/M
3300000882	Freshwater microbial communities from the Columbia River	Environmental	Open in IMG/M
3300001250	Freshwater microbial communities from Lake Mendota, WI - 13AUG2008 deep hole epilimnion	Environmental	Open in IMG/M
3300002195	Freshwater microbial communities from San Paulo Zoo lake, Brazil - AUG 2013	Environmental	Open in IMG/M
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300003393	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD	Environmental	Open in IMG/M
3300003430	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD	Environmental	Open in IMG/M
3300003499	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN	Environmental	Open in IMG/M
3300004125	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (version 2)	Environmental	Open in IMG/M
3300004792	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004836	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005517	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M
3300005584	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF	Environmental	Open in IMG/M
3300007545	Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3	Environmental	Open in IMG/M
3300007551	Estuarine microbial communities from the Columbia River estuary - metaG 1549B-3	Environmental	Open in IMG/M
3300007559	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541	Environmental	Open in IMG/M
3300007561	Estuarine microbial communities from the Columbia River estuary - metaG 1561A-3	Environmental	Open in IMG/M
3300007617	Estuarine microbial communities from the Columbia River estuary - metaG 1554B-02	Environmental	Open in IMG/M
3300007621	Estuarine microbial communities from the Columbia River estuary - metaG 1547A-3	Environmental	Open in IMG/M
3300007622	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02	Environmental	Open in IMG/M
3300007630	Estuarine microbial communities from the Columbia River estuary - metaG 1555C-02	Environmental	Open in IMG/M
3300007651	Estuarine microbial communities from the Columbia River estuary - metaG 1555C-3	Environmental	Open in IMG/M
3300007954	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373B_0.2um	Environmental	Open in IMG/M
3300007955	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373B_3.0um	Environmental	Open in IMG/M
3300007972	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0um	Environmental	Open in IMG/M
3300007974	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2um	Environmental	Open in IMG/M
3300007992	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um	Environmental	Open in IMG/M
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental	Open in IMG/M
3300008262	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-C-NA	Environmental	Open in IMG/M
3300008953	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT4	Environmental	Open in IMG/M
3300008990	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT3	Environmental	Open in IMG/M
3300008999	Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545	Environmental	Open in IMG/M
3300009003	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725	Environmental	Open in IMG/M
3300009059	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703	Environmental	Open in IMG/M
3300009152	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG	Environmental	Open in IMG/M
3300009163	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG	Environmental	Open in IMG/M
3300010312	Estuarine microbial communities from the Columbia River estuary - metaG 1549B-02	Environmental	Open in IMG/M
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental	Open in IMG/M
3300011010	Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice	Environmental	Open in IMG/M
3300012663	Freshwater microbial communities from Indian River, Ontario, Canada - S50	Environmental	Open in IMG/M
3300012715	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES122 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012731	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES145 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013005	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG	Environmental	Open in IMG/M
3300013295	northern Canada Lakes metatranscriptome co-assembly	Environmental	Open in IMG/M
3300017701	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N	Environmental	Open in IMG/M
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental	Open in IMG/M
3300020141	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1	Environmental	Open in IMG/M
3300020161	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1	Environmental	Open in IMG/M
3300020172	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1	Environmental	Open in IMG/M
3300020493	Freshwater microbial communities from Lake Mendota, WI - 14NOV2009 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300021963	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D	Environmental	Open in IMG/M
3300022752	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300024348	0.2um to 3um size fraction coassembly	Environmental	Open in IMG/M
3300027145	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepA_8h	Environmental	Open in IMG/M
3300027198	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753 (SPAdes)	Environmental	Open in IMG/M
3300027206	Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02 (SPAdes)	Environmental	Open in IMG/M
3300027216	Estuarine microbial communities from the Columbia River estuary - metaG 1546A-3 (SPAdes)	Environmental	Open in IMG/M
3300027236	Estuarine microbial communities from the Columbia River estuary - metaG 1554A-3 (SPAdes)	Environmental	Open in IMG/M
3300027244	Estuarine microbial communities from the Columbia River estuary - metaG 1555C-02 (SPAdes)	Environmental	Open in IMG/M
3300027258	Estuarine microbial communities from the Columbia River estuary - metaG 1562A-3 (SPAdes)	Environmental	Open in IMG/M
3300027294	Estuarine microbial communities from the Columbia River estuary - metaG 1548B-02 (SPAdes)	Environmental	Open in IMG/M
3300027365	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)	Environmental	Open in IMG/M
3300027380	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series LW 2014_7_11 (SPAdes)	Environmental	Open in IMG/M
3300027387	Estuarine microbial communities from the Columbia River estuary - metaG 1562A-02 (SPAdes)	Environmental	Open in IMG/M
3300027468	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DN (SPAdes)	Environmental	Open in IMG/M
3300027563	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)	Environmental	Open in IMG/M
3300027621	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF (SPAdes)	Environmental	Open in IMG/M
3300027644	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN (SPAdes)	Environmental	Open in IMG/M
3300027679	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes)	Environmental	Open in IMG/M
3300027689	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (SPAdes)	Environmental	Open in IMG/M
3300027707	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes)	Environmental	Open in IMG/M
3300027720	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)	Environmental	Open in IMG/M
3300027736	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027754	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027756	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)	Environmental	Open in IMG/M
3300027763	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027797	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)	Environmental	Open in IMG/M
3300027892	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)	Environmental	Open in IMG/M
3300027969	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027971	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300028025	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC	Environmental	Open in IMG/M
3300028112	Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental	Open in IMG/M
3300033993	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037	Environmental	Open in IMG/M
3300034105	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127	Environmental	Open in IMG/M
3300034120	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172	Environmental	Open in IMG/M
3300034122	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2014-rr0181	Environmental	Open in IMG/M
3300034200	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190	Environmental	Open in IMG/M
3300034356	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12421J11937_101336161	3300000756	Freshwater And Sediment	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILE
FwDRAFT_100336711	3300000882	Freshwater And Marine	MKSQFEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAIGL
B570J13876_1032693	3300001250	Freshwater	MKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILEC
metazooDRAFT_12229381	3300002195	Lake	MKTDFEIELEMKEAYNQMLDECYPEVKIGYATFSASEILFCCDPVM
B570J29032_1088815614	3300002408	Freshwater	MKSQLEKDLDIKDSFDQMLDDSYPDVKIGYSTFTASEILFNC
JGI25909J50240_10727831	3300003393	Freshwater Lake	MKSQLEKEIEIKESFDQMLDDSYPDVKIGYATYTASEIVFNCDPIA
JGI25921J50272_100662511	3300003430	Freshwater Lake	MKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAIG
JGI25930J51415_10305021	3300003499	Freshwater Lake	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDP
Ga0066182_100992451	3300004125	Freshwater Lake	MKSQFEKDLDIKDSFIEMLDELYPKYKIGNSTFTASEILECCDPVAFAIGLL
Ga0007761_113637182	3300004792	Freshwater Lake	MTKSQFEKDLDIKDSFIDLLNDVYPSVKIGYSTFTPAEILECCDPVAF
Ga0007761_113834275	3300004792	Freshwater Lake	MTKSQFEKDLDIKDSFIDLLNDVYPSVKIGYSTFTPAEILECC
Ga0007759_113066031	3300004836	Freshwater Lake	MKSQLEKEIEIKESFDQMLDDSYPDVKIGYATYTASEILFNCDPIAYQM
Ga0070374_101195228	3300005517	Freshwater Lake	MKTQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPA
Ga0049080_100183581	3300005582	Freshwater Lentic	MKSQLEKEIEIKESFDQMLDDSYPDVKIGYSTFTASEILFNCDPIA
Ga0049082_100761371	3300005584	Freshwater Lentic	MKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFAI
Ga0102873_10641655	3300007545	Estuarine	MKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAF
Ga0102881_10191621	3300007551	Estuarine	MKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPIA
Ga0102828_10582661	3300007559	Estuarine	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPIAF
Ga0102914_10601066	3300007561	Estuarine	MKSQFEKDLEIKESFIDLLNDVYPYVKIGYSTFTAAEILECCDP
Ga0102897_10350256	3300007617	Estuarine	MKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEI
Ga0102897_10727276	3300007617	Estuarine	MKSQFEIDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAF
Ga0102872_12046781	3300007621	Estuarine	MKSQFEIDLEIKESFIDLLNDVYPTVKIGYSTFTPAEI
Ga0102863_11418284	3300007622	Estuarine	MSMTQFERDLTKKDSCIDLLNEIYREVKIGYSTFTPAEILECCDPIAFHIGVI
Ga0102903_10672431	3300007630	Estuarine	MKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPI
Ga0102900_10248025	3300007651	Estuarine	MTKSQFEKDLDIKDSFIDLLNDVYPSVKIGYSTFT
Ga0105739_10189081	3300007954	Estuary Water	MKSDFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEI
Ga0105740_10307283	3300007955	Estuary Water	MKSQLEKDIETKESFIDLLNDVYPSVKIGYSTFTPAEILECCD
Ga0105745_11052731	3300007972	Estuary Water	MKSQFEKDLDIKDSFIDFLNDVYPSVKIGYSTFTPAEILECCDPIAF
Ga0105747_12870233	3300007974	Estuary Water	MKSQFEKDLEIKDSFIEMLDELYPKYKIGNSTFTASE
Ga0105748_101999113	3300007992	Estuary Water	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPI
Ga0114340_11455403	3300008107	Freshwater, Plankton	MKTEFEKELEMKEAYNALLDEVYPEIKIGYSTFTASEILFNCDPIMYN
Ga0114337_11860675	3300008262	Freshwater, Plankton	MEKTQFEKDLEIKESFIDLLNDIYPSVKIGYSTFTPAEILEC
Ga0104241_10015181	3300008953	Freshwater	MEKTQFEKDLEIKESFIDLLNDVYPDVKIGYSTFTAA
Ga0104241_10102521	3300008953	Freshwater	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPA
Ga0104240_1044501	3300008990	Freshwater	MKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDP
Ga0102816_10275301	3300008999	Estuarine	MKSQFEKDLEIKESFIDLLNDIYPSVKIGYSTFTPA
Ga0102813_10962895	3300009003	Estuarine	MTKSQFEKDLDIKDSFIDLLNDVYPSVKIGYSTFTPAEILECCDP
Ga0102830_11144912	3300009059	Estuarine	KKSQLEKDLEIKESFIDLLNEIYPTVKIGYSTATC*
Ga0114980_104791961	3300009152	Freshwater Lake	MKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECC
Ga0114970_103677225	3300009163	Freshwater Lake	MKSEFEKDLEIKESYNQLLDEIYPDVKIGYSTFTASEILFNCDPIAY
Ga0102883_10570695	3300010312	Estuarine	MTKSQFEKDLDIKDSFIDLLNDVYPSVKIGYSTFTP
Ga0129333_103281767	3300010354	Freshwater To Marine Saline Gradient	MKTDFEKQLEIKESFDAMLDECYPEVKIGYSTFTASEILFNCDPVA
Ga0139557_10844803	3300011010	Freshwater	MTQFERDLTIKESFIDLLNDIYPEVKIGYSTFTPAEILECCDPVAFNIGVI
Ga0157203_10104336	3300012663	Freshwater	MNKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAI
Ga0157203_10499413	3300012663	Freshwater	MKSQFEIDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPIAFSIG
Ga0157599_11136614	3300012715	Freshwater	MKSQFEKDLEIKESFIDFLNDLYPTVKIGYSTFTP
Ga0157616_12358834	3300012731	Freshwater	MKSQFEKDLEIKESFIDLLNDLYPTVKIGYSTFTPAEILECCDPVAFAIG*
Ga0164292_104932165	3300013005	Freshwater	MKTDFEKELEIKESYDAMLDECYSPVKIGYATFTAS
Ga0170791_101612631	3300013295	Freshwater	MNKSQFEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAE
Ga0170791_148920303	3300013295	Freshwater	MSKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAE
Ga0170791_153214254	3300013295	Freshwater	MKSQFEIDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPIAFSI
Ga0170791_157402635	3300013295	Freshwater	MKSQFEKDLEIKDSFIEMLDELYPKYKIGSSTFTASEI
Ga0181364_100432910	3300017701	Freshwater Lake	MKSQFEKDLDIKDSFIDLLNDVYPSVKIGYSTFTPA
Ga0181359_11942861	3300019784	Freshwater Lake	MKSQFEKDLDIKDSFIEMLDELYPKYKIGNSTFTASEILECCDPVA
Ga0211732_10017651	3300020141	Freshwater	LSMTQFERDLTIKESFIDLLNEIYPEVKIGYSTFTPAEILECCDPIAFS
Ga0211732_10018161	3300020141	Freshwater	MTQFERDLTIKESFIDLLNEIYPEVKIGYSTFTPAEILECCDPIAFS
Ga0211726_109495413	3300020161	Freshwater	MKSQLEKDIITKESFDQALDDIYPDVKIGYSTFTASEILFNCDPIAYQIGL
Ga0211729_113981624	3300020172	Freshwater	MKTQLEKDLEIKEGYDALLDECYPSVKIGYSTFTAS
Ga0208591_10166191	3300020493	Freshwater	MKSQLEKDLDIKDSFDQMLDDSYPDVKIGYSTFTASE
Ga0222712_103682201	3300021963	Estuarine Water	MKSQLEKDLDIKDSFDQMLDDMYPDVKIGYSTFTASEILFNCDP
Ga0214917_102282061	3300022752	Freshwater	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFL
Ga0244775_1000333031	3300024346	Estuarine	MKSQFEIDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCD
Ga0244776_108664303	3300024348	Estuarine	MTKSQFEKDLDIKDSFIDLLNDVYPSVKIGYSTFTPAEILECCDPVA
Ga0255114_10426433	3300027145	Freshwater	MSKSQLEKDLEIKESFIDLLNDVYPSVKIGYSTFTPAEILE
Ga0208163_10071431	3300027198	Estuarine	MTKSQFEKDLDIKDSFIDLLNDVYPSVKIGYSTFTPAEILECCD
Ga0208023_10142385	3300027206	Estuarine	MNKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAIV
Ga0208677_10147771	3300027216	Estuarine	MKSQFEKDLEIKESFIDLLNDVYPDVKIGYSTFTAAEILE
Ga0208026_10059396	3300027236	Estuarine	MKSQFEKDLEIKESFIDLLNDVYPDVKIGYSTFTAAEILECC
Ga0208173_10174891	3300027244	Estuarine	MKSQFEKDLEIKESFIDLLNDVYPDVKIGYSTFTAAEILEC
Ga0208558_10086951	3300027258	Estuarine	MKSQFEKDLEIKESFIDLLNDVYPDVKIGYSTFTA
Ga0208441_10163561	3300027294	Estuarine	MKSQFEKDLEIKESFIDLLNDVYPDVKIGYSTFTAAEILECCDPIAFAI
Ga0209300_10224631	3300027365	Deep Subsurface	MKTDFEIALEIKEAYDAMLDECYPDVKIGYSTFTASEIL
Ga0208432_10098911	3300027380	Deep Subsurface	MSKSQLEKDLEIKESFIDLLNDLYPTVKIGYSTFTPAEILE
Ga0208311_11270161	3300027387	Estuarine	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFSI
Ga0209247_10282625	3300027468	Freshwater Lake	MKSQLEKEIEIKESFDQMLDDSYPDVKIGYATYTASEI
Ga0209552_10350641	3300027563	Freshwater Lake	MKSQFEKDLDIKDSFIEMLDELYPKYKIGSSTFTASEILE
Ga0208951_10978711	3300027621	Freshwater Lentic	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFAIGL
Ga0209356_10017111	3300027644	Freshwater Lake	MSKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTP
Ga0209356_11807964	3300027644	Freshwater Lake	MKSQFEIDLEIKESFIDLLNDVYPTIKIGYSTFTPAEILE
Ga0209769_10540961	3300027679	Freshwater Lake	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAE
Ga0209551_11935491	3300027689	Freshwater Lake	MKTDFEMALEIKEAYDQMLDECYPEVKIGYSTFTASDILA
Ga0209443_10895051	3300027707	Freshwater Lake	MKSQFEIDLEIKESFIDLLNDVYPTIKIGYSTFTPAE
Ga0209443_11503105	3300027707	Freshwater Lake	MKSQLEKEIEIKESFDQMLDDSYPDVKIGYATYTASEILFNC
Ga0209443_12077963	3300027707	Freshwater Lake	MSMTQFERDLTIKESFIDLLNDVYPEVKIGYSTFTPAEILE
Ga0209617_101646591	3300027720	Freshwater And Sediment	MSKSQLEKDLEIKESFIDLLNDVYPSVKIGYSTFTPAEILECCDPVAFAI
Ga0209190_10449931	3300027736	Freshwater Lake	MKSEFEKDLEIKESYNQLLDEIYPDVKIGYSTFTASEILFN
Ga0209596_12621383	3300027754	Freshwater Lake	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEI
Ga0209444_102474241	3300027756	Freshwater Lake	MSKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFT
Ga0209088_100995121	3300027763	Freshwater Lake	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTP
Ga0209088_103886941	3300027763	Freshwater Lake	MSKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFA
Ga0209107_101332635	3300027797	Freshwater And Sediment	MNKSQFEKDLDIKDSFIDLLNDVYPSVKIGYSTFTPAEIL
Ga0209550_104487581	3300027892	Freshwater Lake	MEKTQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCD
Ga0209191_11948423	3300027969	Freshwater Lake	MKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEIL
Ga0209401_100214328	3300027971	Freshwater Lake	MKSEFEKDLEIKESYDQLLDEIYPDVKIGYSTFTASEILFNCDP
Ga0247723_10250581	3300028025	Deep Subsurface Sediment	MEKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPIAF
Ga0256335_11553991	3300028112	Freshwater	MKTDFEKQLEIKESFDAMLDECYPEVKIGYSTFTASEILFNCDP
Ga0315909_109339431	3300031857	Freshwater	MHEDLDMKDQYDRLLDDMYPEVKIGYSTFTASEILFCCDPIAYKEGFADF
Ga0334994_0525405_392_544	3300033993	Freshwater	MKSQLEKEIEIKESFDQMLDDSYPDVKIGYSTFTASEILFNCDPIAYQIGL
Ga0335035_0734667_373_501	3300034105	Freshwater	MSMTQFERDLTIKESFMDLLNEIYPEVKIGYSTFTPAEILECC
Ga0335056_0276543_835_939	3300034120	Freshwater	MSMTQFERDLTIKESFIDLLNDIYPNVKIGYSTFT
Ga0335060_0167688_2_142	3300034122	Freshwater	MSMTQFERDLTIKESFIDLLNDIYPNVKIGYSTFTPAEILECCDPIA
Ga0335065_0563926_2_157	3300034200	Freshwater	MEKTQFEKDLEIKESFIDLLNDIYPSVKIGYSTFTPAEILECCDPVAFAIGL
Ga0335048_0524790_443_562	3300034356	Freshwater	MKSDFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILE
Ga0335048_0538281_2_118	3300034356	Freshwater	MKSQFEKDLELKESFCQMLDEIYPTYKIGVSTFTASEIL

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096663

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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