Metagenome Family F096840

Basic Information
Family ID	F096840
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	83 residues
Representative Sequence	MIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYVSLGSQVNIFCTEEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI
Number of Associated Samples	88
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	76.92 %
% of genes near scaffold ends (potentially truncated)	34.62 %
% of genes from short scaffolds (< 2000 bps)	91.35 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (71.154 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (12.500 % of family members)
Environment Ontology (ENVO)	Unclassified (37.500 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (71.154 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.88% β-sheet: 4.88% Coil/Unstructured: 40.24%
Feature Viewer

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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00072	Response_reg	3.85
PF01068	DNA_ligase_A_M	1.92
PF00903	Glyoxalase	1.92
PF09084	NMT1	0.96
PF13091	PLDc_2	0.96
PF00854	PTR2	0.96
PF04392	ABC_sub_bind	0.96
PF00753	Lactamase_B	0.96
PF00216	Bac_DNA_binding	0.96
PF13492	GAF_3	0.96
PF02735	Ku	0.96
PF03070	TENA_THI-4	0.96
PF00565	SNase	0.96
PF13683	rve_3	0.96
PF07885	Ion_trans_2	0.96
PF01510	Amidase_2	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.92
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.92
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.96
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.96
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.96
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.96
COG3104	Dipeptide/tripeptide permease	Amino acid transport and metabolism [E]	0.96
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.96

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.15 %
All Organisms	root	All Organisms	28.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.15 %
cellular organisms	root	All Organisms → cellular organisms	28.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.15 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	28.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.15 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	10.58 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.85 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.96 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.96 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.15 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	10.58 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.96 %
Zetaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria	0.96 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.96 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.96 %
Candidatus Omnitrophica	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.15 %
candidate division NC10	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10	10.58 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.96 %
Zetaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria	0.96 %
Candidatus Omnitrophica	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.15 %
unclassified candidate division NC10	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10	10.58 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.96 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.96 %
Zetaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria	0.96 %
Candidatus Omnitrophica	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.15 %
candidate division NC10 bacterium CSP1-5	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	10.58 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.96 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.96 %
Zetaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria	0.96 %
Candidatus Omnitrophica	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886012\|MBSR1b_contig_1822885	Not Available	811	Open in IMG/M
2199352025\|deepsgr__Contig_184350	Not Available	1215	Open in IMG/M
3300000041\|ARcpr5oldR_c011800	Not Available	746	Open in IMG/M
3300002899\|JGIcombinedJ43975_10043103	Not Available	752	Open in IMG/M
3300004114\|Ga0062593_100791338	Not Available	941	Open in IMG/M
3300004114\|Ga0062593_101657296	Not Available	697	Open in IMG/M
3300004157\|Ga0062590_101542318	Not Available	669	Open in IMG/M
3300004463\|Ga0063356_102286930	Not Available	824	Open in IMG/M
3300004479\|Ga0062595_101465205	Not Available	627	Open in IMG/M
3300005276\|Ga0065717_1012358	Not Available	575	Open in IMG/M
3300005289\|Ga0065704_10305735	Not Available	877	Open in IMG/M
3300005290\|Ga0065712_10605671	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	588	Open in IMG/M
3300005294\|Ga0065705_10234940	Not Available	1256	Open in IMG/M
3300005295\|Ga0065707_10356507	Not Available	900	Open in IMG/M
3300005328\|Ga0070676_10118646	All Organisms → cellular organisms → Bacteria	1657	Open in IMG/M
3300005328\|Ga0070676_10226745	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1237	Open in IMG/M
3300005330\|Ga0070690_100640919	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300005332\|Ga0066388_100383062	Not Available	2052	Open in IMG/M
3300005334\|Ga0068869_100390240	Not Available	1143	Open in IMG/M
3300005353\|Ga0070669_100407303	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1114	Open in IMG/M
3300005440\|Ga0070705_101661852	Not Available	539	Open in IMG/M
3300005456\|Ga0070678_100539141	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1034	Open in IMG/M
3300005459\|Ga0068867_100679030	Not Available	907	Open in IMG/M
3300005467\|Ga0070706_101886313	Not Available	542	Open in IMG/M
3300005526\|Ga0073909_10039919	All Organisms → cellular organisms → Bacteria	1656	Open in IMG/M
3300005543\|Ga0070672_100850664	Not Available	804	Open in IMG/M
3300005547\|Ga0070693_101438454	Not Available	537	Open in IMG/M
3300005547\|Ga0070693_101483667	Not Available	529	Open in IMG/M
3300005549\|Ga0070704_101158848	Not Available	704	Open in IMG/M
3300005577\|Ga0068857_100993338	Not Available	808	Open in IMG/M
3300005719\|Ga0068861_100269369	Not Available	1462	Open in IMG/M
3300005764\|Ga0066903_100241229	Not Available	2773	Open in IMG/M
3300005843\|Ga0068860_101086832	Not Available	819	Open in IMG/M
3300006844\|Ga0075428_100061801	All Organisms → cellular organisms → Bacteria	4102	Open in IMG/M
3300006844\|Ga0075428_101268483	Not Available	775	Open in IMG/M
3300006844\|Ga0075428_101986240	Not Available	603	Open in IMG/M
3300006845\|Ga0075421_100126893	All Organisms → cellular organisms → Bacteria	3200	Open in IMG/M
3300006852\|Ga0075433_10332267	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1344	Open in IMG/M
3300006852\|Ga0075433_11882464	Not Available	513	Open in IMG/M
3300006871\|Ga0075434_102545995	Not Available	512	Open in IMG/M
3300006881\|Ga0068865_101456200	Not Available	613	Open in IMG/M
3300006969\|Ga0075419_10119754	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1704	Open in IMG/M
3300009094\|Ga0111539_10283755	All Organisms → cellular organisms → Bacteria	1927	Open in IMG/M
3300009147\|Ga0114129_10259761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria	2328	Open in IMG/M
3300009148\|Ga0105243_10627918	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	1038	Open in IMG/M
3300009156\|Ga0111538_11403640	Not Available	881	Open in IMG/M
3300009162\|Ga0075423_10429667	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1387	Open in IMG/M
3300009162\|Ga0075423_10598849	Not Available	1161	Open in IMG/M
3300009610\|Ga0105340_1220585	Not Available	804	Open in IMG/M
3300009678\|Ga0105252_10285580	Not Available	732	Open in IMG/M
3300010362\|Ga0126377_11542069	Not Available	738	Open in IMG/M
3300010375\|Ga0105239_10796887	Not Available	1082	Open in IMG/M
3300010396\|Ga0134126_10548793	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1327	Open in IMG/M
3300010400\|Ga0134122_10597121	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1019	Open in IMG/M
3300010400\|Ga0134122_11712143	Not Available	657	Open in IMG/M
3300010401\|Ga0134121_11517893	Not Available	686	Open in IMG/M
3300012478\|Ga0157328_1022343	Not Available	544	Open in IMG/M
3300012922\|Ga0137394_10086717	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2623	Open in IMG/M
3300012957\|Ga0164303_10000614	All Organisms → cellular organisms → Bacteria	8727	Open in IMG/M
3300012957\|Ga0164303_11126807	Not Available	568	Open in IMG/M
3300012961\|Ga0164302_10151597	All Organisms → cellular organisms → Bacteria → Proteobacteria	1366	Open in IMG/M
3300013105\|Ga0157369_11721267	Not Available	637	Open in IMG/M
3300013296\|Ga0157374_12666233	Not Available	527	Open in IMG/M
3300013297\|Ga0157378_10361460	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1421	Open in IMG/M
3300013297\|Ga0157378_10547372	Not Available	1162	Open in IMG/M
3300013306\|Ga0163162_10145350	Not Available	2487	Open in IMG/M
3300014325\|Ga0163163_10263305	All Organisms → cellular organisms → Bacteria	1775	Open in IMG/M
3300014969\|Ga0157376_12868816	Not Available	522	Open in IMG/M
3300015371\|Ga0132258_11273224	All Organisms → cellular organisms → Bacteria	1859	Open in IMG/M
3300015371\|Ga0132258_11492727	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1707	Open in IMG/M
3300015371\|Ga0132258_12827454	Not Available	1208	Open in IMG/M
3300015372\|Ga0132256_100593777	Not Available	1222	Open in IMG/M
3300015373\|Ga0132257_100799803	All Organisms → cellular organisms → Bacteria	1177	Open in IMG/M
3300015373\|Ga0132257_100847277	Not Available	1143	Open in IMG/M
3300015374\|Ga0132255_101168334	Not Available	1158	Open in IMG/M
3300015374\|Ga0132255_103709998	Not Available	649	Open in IMG/M
3300015374\|Ga0132255_105260270	Not Available	548	Open in IMG/M
3300017792\|Ga0163161_10805710	Not Available	790	Open in IMG/M
3300017965\|Ga0190266_10707104	Not Available	630	Open in IMG/M
3300018072\|Ga0184635_10041249	Not Available	1764	Open in IMG/M
3300018469\|Ga0190270_10226320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1605	Open in IMG/M
3300019886\|Ga0193727_1150882	Not Available	632	Open in IMG/M
3300019997\|Ga0193711_1041249	Not Available	564	Open in IMG/M
3300025903\|Ga0207680_10564866	Not Available	813	Open in IMG/M
3300025907\|Ga0207645_11016592	Not Available	561	Open in IMG/M
3300025915\|Ga0207693_11031616	Not Available	627	Open in IMG/M
3300025920\|Ga0207649_10624669	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	830	Open in IMG/M
3300025923\|Ga0207681_10247244	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1391	Open in IMG/M
3300025926\|Ga0207659_10425047	Not Available	1115	Open in IMG/M
3300025930\|Ga0207701_10373559	Not Available	1231	Open in IMG/M
3300025938\|Ga0207704_10327710	All Organisms → cellular organisms → Bacteria	1184	Open in IMG/M
3300025942\|Ga0207689_11340106	Not Available	601	Open in IMG/M
3300025949\|Ga0207667_12064870	Not Available	529	Open in IMG/M
3300025949\|Ga0207667_12261665	Not Available	500	Open in IMG/M
3300026089\|Ga0207648_10037884	All Organisms → cellular organisms → Bacteria	4244	Open in IMG/M
3300026116\|Ga0207674_10993955	Not Available	808	Open in IMG/M
3300027533\|Ga0208185_1087484	Not Available	734	Open in IMG/M
3300031562\|Ga0310886_10656407	Not Available	649	Open in IMG/M
3300031854\|Ga0310904_11090701	Not Available	572	Open in IMG/M
3300031858\|Ga0310892_11169699	Not Available	547	Open in IMG/M
3300031890\|Ga0306925_10762783	Not Available	1007	Open in IMG/M
3300031908\|Ga0310900_11334388	Not Available	601	Open in IMG/M
3300031944\|Ga0310884_10527320	Not Available	697	Open in IMG/M
3300032205\|Ga0307472_101944444	Not Available	588	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	58.65%
Environmental	Environmental	41.35%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	58.65%
Terrestrial	Environmental → Terrestrial	37.50%
Aquatic	Environmental → Aquatic	3.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	37.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	28.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.85%
Sediment	Environmental → Aquatic → Sediment	3.85%
Roots	Host-Associated → Plants → Roots	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	28.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.23%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	15.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	12.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.62%
Loam	Environmental → Terrestrial → Soil → Loam	8.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.85%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.23%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	15.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	12.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.73%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.50%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	9.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.85%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.96%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000041	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere	Host-Associated	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005276	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Mutant cpr5	Host-Associated	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012478	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.9.old.080610	Host-Associated	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019997	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m2	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
MBSR1b_0137.00001330	2162886012	Miscanthus Rhizosphere	MIMLELSQASFECLLEHASEALPQLFKQRANESGYVSFGSQVNIFCTENEAKELLVIAEKDCTGAVSAIKIGLRIGDEERLAEKKS
deepsgr_03161460	2199352025	Soil	MIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYVSLGSQVNIFCTEEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI
ARcpr5oldR_0118002	3300000041	Arabidopsis Rhizosphere	MIMLELSRPSFDCLLDHASETLPQLFEQRAKDNESGYVSLGSLVNIFCTEDQAKELLAIAEKDCTGAVSAIKTGIRVGDEERRXEKKS*
JGIcombinedJ43975_100431032	3300002899	Soil	MLLIELSRASFDCLLEHASEALPNLFKPRANSESGYVSLDSQVNMYCTEEEAKQLLVIAERDCTGAVSAVRTGIRLGDAAI*
Ga0062593_1007913382	3300004114	Soil	MIMLELSRPSFECLLDHASETLPQLFEQRTKDKESGYVSLDSQVNIFCTENEANELLVIAERDCTGAVSAIRTGIRIGDEEPPAEKKS*
Ga0062593_1016572963	3300004114	Soil	GRSMIMLELSRPSFDCLLDHASETLPQLFEQRAKDNESGYVSLGSLVNIFCTEDQAKELLAIAEKDCTGAVSAIKTGIRVGDEKRLAEKKS*
Ga0062590_1015423181	3300004157	Soil	MITLELSQPSFDCLRDHASETLPELFKPRGKDNESGYVSLGSQVNVFCTESQAKELLAIAERDCTGAVSAIRTGIRLGDEEI*
Ga0063356_1022869301	3300004463	Arabidopsis Thaliana Rhizosphere	MIMLELSQASFECLLEHASEALPQLFKQRANESGYVSFGSQVNIFCTENEAKELLVIAEKDCTGAVSAIKIGLRIGDEERLAEKKS*
Ga0062595_1014652051	3300004479	Soil	MLLIELSRASFDCLLEHASEALPKLFKPRANNESGYVSLDSQVNMYCTEEEAKQLLVIAERDCTGAVSAVRTGIRLGDAAI*
Ga0065717_10123581	3300005276	Arabidopsis Rhizosphere	MIMLELSRPSFDCLLDHASETLPQLFEQRAKDNESGYVSLGSLVNIFCTEDQAKELLAIAEKDCTGAVSAIKTGIRVGDEERRAEKKS*
Ga0065704_103057351	3300005289	Switchgrass Rhizosphere	MIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYVPLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0065712_106056711	3300005290	Miscanthus Rhizosphere	FDCLLDHASETLPELFKPRGKDNESGYVSLGSQVNVFCTESQAKELLAIAERDCTGAVSAIRTGIRLGDEEI*
Ga0065705_102349404	3300005294	Switchgrass Rhizosphere	MIMLELSRPSFDCLLDHASETLPQLFEQRAKDNESGYVSLGSLVNIFCTEDQAKELLAIAEKDCTGAVSAIKTGIRVGDEERRAEK
Ga0065707_103565071	3300005295	Switchgrass Rhizosphere	MIMLELSRASFDCLLDHASEALPELFKQQAKDDETGYVSLGSQVNILCTEEQAKELLAIAEKDCTGAISAIKTGIRLGNEDRLAEKKS*
Ga0070676_101186461	3300005328	Miscanthus Rhizosphere	MIMLELSQASFECLLEHASEALPQLFKQRANESGYVSFGSQVNIFCTENEAKELLVIAEKDCTGAVSAIKIGL
Ga0070676_102267452	3300005328	Miscanthus Rhizosphere	TQGDNRMITLELSQPSFDCLLDHASETLPELFKPRGKDNESGYVSLGSQVNVFCTESQAKELLAIAERDCTGAVSAIRTGIRLGDEEI*
Ga0070690_1006409191	3300005330	Switchgrass Rhizosphere	MIMLELSQASFECLLEHASEALPQLFKQRANESGYVSFGSQVNIFCTENEAKELLVIAEKDCTGAVSAI
Ga0066388_1003830621	3300005332	Tropical Forest Soil	MIMLELSRASFDCLLGHASEALPQLFKQRAKDNESGYVSLGSQVNIFCTKEQAKELLAIAEKDCTGAISAIKTGIRLGDEEPLAEKKS*
Ga0068869_1003902401	3300005334	Miscanthus Rhizosphere	MITLELSQPSFDCLLDHASEALPQLFNQRAKDNETGYVSLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0070669_1004073031	3300005353	Switchgrass Rhizosphere	LDHASETLPELFKPRGKDNESGYVSLGSQVNVFCTESQAKELLAIAERDCTGAVSAIRTGIRLGDEEI*
Ga0070705_1016618521	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYESLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0070678_1005391412	3300005456	Miscanthus Rhizosphere	MITLELSQPSFDCLLDHASETLPELFKPRGKDNESGYVSLGSQVNVFCTESQAKELLAIAERDCTGAVSAIRTGIRLGDEEI*
Ga0068867_1006790302	3300005459	Miscanthus Rhizosphere	MIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYVSLGSQVNIFCTEEQAKELLAIAEKDCTGAISAIKTGIRVGDE*
Ga0070706_1018863131	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MIMLELSQASFECLLEHASEALPQLFKQRANESGYVSFGSQVNIFCTENEAKELLVIAEKDCTGAVSAIKIGLRIGDEERLAEK
Ga0073909_100399193	3300005526	Surface Soil	MIMLELSRASFDCLLDHASEALPQLFNQRAKDNETGYVSLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0070672_1008506641	3300005543	Miscanthus Rhizosphere	MITLELSQPSFDCLLDHASETLPELFKPRGKDNESGYVSLGSQVNVFCTESQAKELLAIAERDCTGAVSAIRTGIRLGDEE
Ga0070693_1014384541	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MIMLELSRPSFDCLLDHASETLPQLFEQRAKDNQSGYVSLGSLVNIFCTEDQAKELLAIAEKDCTGAVSAIKTGIRAGDEKRLAEKKS*
Ga0070693_1014836671	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MIMLELSQASFECLLEHASEALPQLFKQRANESGYVSFGSQVNIFCTENEAKELLVIAEKDCTGAVSAIKIGLRIGDEERLAEKK
Ga0070704_1011588482	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYVPLGSQVNIVCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0068857_1009933382	3300005577	Corn Rhizosphere	MIMLELSRPSFDCLLDHASETLPQLFEQRAKDNQSGYVSLGSLVNIFCTEDQAKELLAIAEKDCTGAVSAIKTGIRVGDEERRAEKKS*
Ga0068861_1002693691	3300005719	Switchgrass Rhizosphere	MIMLELSRPSFDCLLDHASETLPQLFEQRAKDNESGYVSLGSLVNIFCTEDQAKELLAIAEKDCTGA
Ga0066903_1002412293	3300005764	Tropical Forest Soil	MIMLELSRASFDCLLGHASETLPQLFKQRAKDNESGYVSLGSQVNIFCTKEQAKELLAIAEKDCTGAISAIKTGIRLGDEEPLAEKKS*
Ga0068860_1010868321	3300005843	Switchgrass Rhizosphere	MIMLELSRASFDCLLDHASEALPQLFKQRAKDNESGYVSLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0075428_1000618011	3300006844	Populus Rhizosphere	NRMIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYESLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDE*
Ga0075428_1012684831	3300006844	Populus Rhizosphere	NRMIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYVSLDSQVNIFCTEEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0075428_1019862401	3300006844	Populus Rhizosphere	EPCNARDISGEVMEGRSMIMLELSRPSFDCLLDHASETLPQLFEQRAKDNQSGYVSLGSLVNIFCTEDQAKELLAIAEKDCTGAVSAIKTGIRVGDEERRAEKKS*
Ga0075421_1001268931	3300006845	Populus Rhizosphere	MIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYVSLDSQVNIFCTEEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0075433_103322672	3300006852	Populus Rhizosphere	MVLIELSRASFDCLLKHGSEALPNLSKPRANNESGYVSLDSQVNMYCTEEEAKQLLVIAERDCTGAVSAVRTGIRLGDAAI*
Ga0075433_118824641	3300006852	Populus Rhizosphere	MIMLELSRASFDCLLDHAFEALPQLFKQRAKDNESGYESLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0075434_1025459951	3300006871	Populus Rhizosphere	ASKEGRAMLLIELSRASFDCLLEHASEALPNLFKPRANNESGYVSLDSQVNMYCTEEEAKQLLVIAERDCTGAVSAVRTGIRVGDDAI*
Ga0068865_1014562001	3300006881	Miscanthus Rhizosphere	MLELSRASFDCLLDHASEALPQLFNQRAKDNETGYVSLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0075419_101197543	3300006969	Populus Rhizosphere	MIMLELSRASFDCLLDHASEALPQLFNQRAKNNETGYVSVGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0111539_102837551	3300009094	Populus Rhizosphere	MIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYESLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDE*
Ga0114129_102597613	3300009147	Populus Rhizosphere	MLLIELSRASFDCLLEHASEALPNLFKPRANNESGYASLDSQVNMYCTEEEAKQLLVIAERDCTGAVSAVRTGIRLGDAAI*
Ga0105243_106279181	3300009148	Miscanthus Rhizosphere	MIMLELSRASFDCLLDHASEALRQLFNQRAKDDESGYVSLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0111538_114036402	3300009156	Populus Rhizosphere	ELSRASFDCLLDHASEALPQLFNQRAKDNETGYVSLGSQVNIFCTDEQAKELLAIAERDCTGAISAIKTGIRVGDEAI*
Ga0075423_104296671	3300009162	Populus Rhizosphere	MITLELSQPSFDCLLDHGSETLRELFKPRGKDNESGYVSLGSQVNVFCTESQAKELLAIAERDCTGAVSAIRTGIRLGDEEI*
Ga0075423_105988491	3300009162	Populus Rhizosphere	MIMLELSRASFECLLEHGSEALPQLFKQRPKDNESGYVSLASQVNIFCTEDQAKELLAIAERDCTGAVSAIRTGIRLGDEEPLAEKKS*
Ga0105340_12205852	3300009610	Soil	MIMLELSRARFDCLLDHASEVLPQLFNQRAKDNETGYVSLGSQVNIFCTEEQAKELLAIAEKDCTGAISAIKTGIRVDDEAI*
Ga0105252_102855802	3300009678	Soil	MIMLELSRARFDCLLDHASEVLPQLFNQRAKDNETGYVSLGSQVNIFCTEEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0126377_115420691	3300010362	Tropical Forest Soil	MLAALVSPRYNPTPMIMIELSLASFDCLLEHASEALPQLFRQRLRDNESGYVPLASQVNIYCTEDQAKELLVIAERDCTGAVSAIRTGIRLGD*
Ga0105239_107968871	3300010375	Corn Rhizosphere	MIMLELSRPSFDCLLDHASETLPQLFEQRAKDNESGYVSLGSLVNIFCTEDQAKELLAIAEKDCTGAV
Ga0134126_105487931	3300010396	Terrestrial Soil	LLDHASETLPELFKPRGKDNESGYVSLGSQVNVFCTESQAKELLAIAERDCTGAVSAIRTGIRLGDEEI*
Ga0134122_105971211	3300010400	Terrestrial Soil	ITLELSQPSFDCLLDHASETLPELFKPRGKDNESGYVSLGSQVNVFCTESQAKELLAIAERDCTGAVSAIRTGIRLGDEEI*
Ga0134122_117121431	3300010400	Terrestrial Soil	MIVLELSRPSFDCLLDHASETLPQLFEQRAKDNESGYVSLGSLVNIFCTEDQAKELLAIAEKDCTGAVSAIKTGIRVGDEERRAEKKS*
Ga0134121_115178931	3300010401	Terrestrial Soil	MIMLELSRASFDCLLDHASEALPQLFKQRAKDNESGYVSLGSQVNIFCTEEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0157328_10223431	3300012478	Arabidopsis Rhizosphere	MIMLELSRASFDCLLDHASEALPQLFKQRAKDNESGYVPLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0137394_100867175	3300012922	Vadose Zone Soil	MIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYVSLGSQMNIFCTEEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0164303_100006143	3300012957	Soil	MIMLELSRPSFDCLLDHASETLPQLFEQRAKDNESGYVSLGSLVNIFCTEDQAKELLAIAEKDCTGAVSAIKTGIRVGDEKRLAEKKS*
Ga0164303_111268071	3300012957	Soil	MIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYVPLGSQVNIFCTEEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0164302_101515971	3300012961	Soil	MIMLDLSRASFDCLLDHASEALPQLFNQRAKDNETGYVSLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0157369_117212672	3300013105	Corn Rhizosphere	ELSQASFECLLEHASEALPQLFKQRANESGYVSFGSQVNIFCTENEAKELLVIAEKDCTGAVSAIKIGLRIGDEERLAEKKS*
Ga0157374_126662331	3300013296	Miscanthus Rhizosphere	MIMLELSQASFECLLEHASEALPQLFKQRANESGYVSFGSQVNIFCTENEAKELLVIAEKDCTGAVSAIKIGLRIGDEERLA
Ga0157378_103614603	3300013297	Miscanthus Rhizosphere	MNTLELRQTSFDCLLDHASETLPELFKPRGKDNESGYVSLGSQVNVFCTESQAKELLAIAERDCTGAVSAIRTGIRLGDEEI*
Ga0157378_105473722	3300013297	Miscanthus Rhizosphere	MIMLELSRASFDCLLDHASEALPQLFKQRANDNESGYVSLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0163162_101453501	3300013306	Switchgrass Rhizosphere	GRANRMIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYVPLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0163163_102633054	3300014325	Switchgrass Rhizosphere	IMLELSQASFECLLEHASEALPQLFKQRANESGYVSFGSQVNIFCTENEAKELLVIAEKDCTGAVSAIKIGLRIGDEERLAEKKS*
Ga0157376_128688161	3300014969	Miscanthus Rhizosphere	MIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYVSLGSLVNIFCTEDQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0132258_112732241	3300015371	Arabidopsis Rhizosphere	MIMIELSRASFDCLLDHASEALSQLFNKRAKDDESGYESLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIR
Ga0132258_114927273	3300015371	Arabidopsis Rhizosphere	MITLELSQPSFDCLLDHASETLRELFKPRGKDNESGYVSLGSQVNVFCTESQAKELLAIAERDCTGAVSAIRTGIRLGDEEI*
Ga0132258_128274543	3300015371	Arabidopsis Rhizosphere	MIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYVSLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVG
Ga0132256_1005937771	3300015372	Arabidopsis Rhizosphere	MIMIELSRASFDCLLDHASEALSQLFNQRAKDDESGYESLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0132257_1007998031	3300015373	Arabidopsis Rhizosphere	MIMIELSRASFDCLLDHASEALSQLFNQRAKDDESGYESLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVG
Ga0132257_1008472771	3300015373	Arabidopsis Rhizosphere	MIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYVPLGSQVNIFCTDEQAKELLAIAEKDCTGAVSAIRTGIRLGDEEPLAEKKS*
Ga0132255_1011683342	3300015374	Arabidopsis Rhizosphere	MIMIELSRASFDCLLDHASEALSQLFNKRAKDDESGYESLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0132255_1037099982	3300015374	Arabidopsis Rhizosphere	MLELSRASFDCLLDHASEALPQLFKQRAKDNESGYVSLGSQVNIFCTEAHAKELLAIAEKDCTGAISAIKTGIRVGDEAI*
Ga0132255_1052602701	3300015374	Arabidopsis Rhizosphere	ECLLEHGSEALPQLFKQRPKDNESGYVSLASQVNIFCTEDQAKELLAIAERDCTGAVSAIRTGIRLGDEEPLAEKKS*
Ga0163161_108057102	3300017792	Switchgrass Rhizosphere	MIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYVPLGSQVNIFCTDEQAKELLAIAERDCTGAISAIKTGIRVGDEAI
Ga0190266_107071041	3300017965	Soil	MIMLELSRARFDCLLDHASEVLPQLFNQRARDNETGYVSLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI
Ga0184635_100412492	3300018072	Groundwater Sediment	MIMLELSRASFDCLLDHASEALPQLFNQRAKDNETGYVSLGSQVNIFCTEEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI
Ga0190270_102263204	3300018469	Soil	MIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYESLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI
Ga0193727_11508821	3300019886	Soil	MIMLELSRASFDCLLDHASEALPQLFNQRTKDNESGYESLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI
Ga0193711_10412491	3300019997	Soil	MIMLELRRASFDCLLDHASEALPQLFNQRAKDNESGYVSLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI
Ga0207680_105648661	3300025903	Switchgrass Rhizosphere	MITLELSQPSFDCLLDHASETLPELFKPRGKDNESGYVSLGSQVNVFCTESQAKELLAIAERDCTGAVSAIRTGIRLGDEEI
Ga0207645_110165921	3300025907	Miscanthus Rhizosphere	MIMLELSQASFECLLEHASEALPQLFKQRANESGYVSFGSQVNIFCTENEAKELLVIAEKDCTGAVSAIKIGLRIGDEERL
Ga0207693_110316162	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MIMLELSRPSFDCLLDHASETLPQLFEQRAKDNESGYVSLGSLVNIFCTEDQAKELLAIAEKDCTGAVSAIKTGIRVGDEER
Ga0207649_106246692	3300025920	Corn Rhizosphere	MIMLELSRPSFDCLLDHASETLPELFKPRGKDNESGYVSLGSQVNVFCTESQAKELLAIAERDCTGAVSAIRTGIRLGDEEI
Ga0207681_102472443	3300025923	Switchgrass Rhizosphere	MIMLELSRASFDCLLDHASETLPELFKPRGKDNESGYVSLGSQVNVFCTESQAKELLAIAERDCTGAVSAIRTGIRLGDEEI
Ga0207659_104250471	3300025926	Miscanthus Rhizosphere	CLLDHASETLPQLFEQRAKDNESGYVSLGSLVNIFCTEDQAKELLAIAEKDCTGAVSAIKTGIRVGDEERRAEKKS
Ga0207701_103735592	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYVPLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI
Ga0207704_103277101	3300025938	Miscanthus Rhizosphere	MIMLELSRASFECLLEHGSEALPQLFNQRAKDNETGYVSLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI
Ga0207689_113401062	3300025942	Miscanthus Rhizosphere	MIMLELSRPSFDCLLDHASETLPQLFEQRAKDNETGYVSLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI
Ga0207667_120648701	3300025949	Corn Rhizosphere	MITLELSQPSFDCLRDHASETLPELFKPRGKDNESGYVSLGSQVNVFCTESQAKELLAIAERDCTGAVSAIRTGIRLGDEEI
Ga0207667_122616651	3300025949	Corn Rhizosphere	EPCNARDISGEVKEGRSMIMLELSRPSFDCLLDHASETLPQLFEQRAKDNESGYVSLGSLVNIFCTEDQAKELLAIAEKDCTGAVSAIKTGIRVGDEERRAEKKS
Ga0207648_100378842	3300026089	Miscanthus Rhizosphere	MIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYVSLGSQVNIFCTEEHAKELLAIAEKDCTGAISAIKTGIRVGDEAI
Ga0207674_109939552	3300026116	Corn Rhizosphere	MIMLELSRPSFDCLLDHASETLPQLFEQRAKDNQSGYVSLGSLVNIFCTEDQAKELLAIAEKDCTGAVSAIKTGIRVGDEERRAEKKS
Ga0208185_10874841	3300027533	Soil	MIMLELSRARFDCLLDHASEVLPQLFNQRAKDNETGYVSLGSQVNIFCTEEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI
Ga0310886_106564071	3300031562	Soil	LSRASFDCLLDHASEALPQFNQRAKDNESGYASLDSQVNIFCTEEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI
Ga0310904_110907012	3300031854	Soil	YKRLKSGRANRMIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYVSLDSQVNIFCTEEQAKELLAIAEKDCTGAVSAIKTGIRVGDEERRAEKKS
Ga0310892_111696992	3300031858	Soil	MIMLELSRPSFDCLLDHASETLPQLFEQRAKDNESGYVSLGSLVNIFCTEDQAKELLAIAEKDCTGAISAIKTGIRVGDEAI
Ga0306925_107627831	3300031890	Soil	MIMFELSRASFDCLLDHASEALPQLFKQRAKDNESGYVSLSSQVNIFCTEEQAKELLAIAEKDCTGAISAIKTGIRSGDEERLVQKKN
Ga0310900_113343881	3300031908	Soil	MIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYVSLDSQVNIFCTEEQAKELLAIAEKDCTGAISAIKTGIRVGDEAI
Ga0310884_105273201	3300031944	Soil	MIMLELSRPSFDCLLDHASETLPQLFEQRAKDNESGYVSLGSLVNIFCTEDQAKELLAIAEKDCTGAVSA
Ga0307472_1019444441	3300032205	Hardwood Forest Soil	MIMLELSRASFDCLLDHASEALPQLFNQRAKDNESGYESLGSQVNIFCTDEQAKELLAIAEKDCTGAISAIKTGIRVGDE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F096840

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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