Metagenome / Metatranscriptome Family F096917

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096917
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	56 residues
Representative Sequence	MKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYISV
Number of Associated Samples	71
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	10.34 %
% of genes near scaffold ends (potentially truncated)	9.62 %
% of genes from short scaffolds (< 2000 bps)	22.12 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (92.308 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (32.692 % of family members)
Environment Ontology (ENVO)	Unclassified (46.154 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (44.231 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.57% β-sheet: 0.00% Coil/Unstructured: 65.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF13392	HNH_3	1.92
PF13585	CHU_C	1.92
PF00722	Glyco_hydro_16	1.92
PF00593	TonB_dep_Rec	0.96
PF13661	2OG-FeII_Oxy_4	0.96
PF00037	Fer4	0.96
PF13578	Methyltransf_24	0.96
PF03073	TspO_MBR	0.96
PF13759	2OG-FeII_Oxy_5	0.96
PF16861	Carbam_trans_C	0.96
PF05728	UPF0227	0.96
PF05050	Methyltransf_21	0.96
PF07715	Plug	0.96
PF13640	2OG-FeII_Oxy_3	0.96
PF01832	Glucosaminidase	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2273	Beta-glucanase, GH16 family	Carbohydrate transport and metabolism [G]	1.92
COG3476	Tryptophan-rich sensory protein TspO/CrtK (mitochondrial benzodiazepine receptor homolog)	Signal transduction mechanisms [T]	0.96

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
All Organisms	root	All Organisms	7.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Viruses	superkingdom	All Organisms → Viruses	5.77 %
cellular organisms	root	All Organisms → cellular organisms	1.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	5.77 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	5.77 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	5.77 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5.77 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5.77 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.31 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5.77 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004793\|Ga0007760_10036245	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1446	Open in IMG/M
3300006802\|Ga0070749_10095943	Not Available	1757	Open in IMG/M
3300006802\|Ga0070749_10312347	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	879	Open in IMG/M
3300006802\|Ga0070749_10341350	Not Available	833	Open in IMG/M
3300008120\|Ga0114355_1004360	Not Available	8555	Open in IMG/M
3300009059\|Ga0102830_1225769	Not Available	547	Open in IMG/M
3300011011\|Ga0139556_1072934	Not Available	518	Open in IMG/M
3300013004\|Ga0164293_10859515	Not Available	572	Open in IMG/M
(restricted) 3300013126\|Ga0172367_10260848	Not Available	1046	Open in IMG/M
3300017723\|Ga0181362_1052423	Not Available	847	Open in IMG/M
3300017778\|Ga0181349_1166639	Not Available	782	Open in IMG/M
3300019784\|Ga0181359_1157311	Not Available	773	Open in IMG/M
3300020162\|Ga0211735_10431114	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1535	Open in IMG/M
3300020172\|Ga0211729_10972447	Not Available	631	Open in IMG/M
3300020542\|Ga0208857_1027249	Not Available	928	Open in IMG/M
3300021961\|Ga0222714_10031933	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3900	Open in IMG/M
3300022176\|Ga0212031_1037305	Not Available	801	Open in IMG/M
3300022190\|Ga0181354_1055400	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1318	Open in IMG/M
3300022190\|Ga0181354_1137558	Not Available	773	Open in IMG/M
3300022407\|Ga0181351_1031268	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2263	Open in IMG/M
3300022407\|Ga0181351_1053273	Not Available	1682	Open in IMG/M
3300022407\|Ga0181351_1176578	Not Available	740	Open in IMG/M
3300024239\|Ga0247724_1066042	Not Available	548	Open in IMG/M
3300025646\|Ga0208161_1020453	Not Available	2500	Open in IMG/M
3300025646\|Ga0208161_1021699	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2404	Open in IMG/M
3300025647\|Ga0208160_1003128	Not Available	6485	Open in IMG/M
3300027707\|Ga0209443_1206683	Not Available	687	Open in IMG/M
3300033993\|Ga0334994_0231801	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	978	Open in IMG/M
3300033994\|Ga0334996_0242474	Not Available	932	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	96.15%
Terrestrial	Environmental → Terrestrial	3.85%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	54.81%
Marine	Environmental → Aquatic → Marine	41.35%
Soil	Environmental → Terrestrial → Soil	2.88%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.96%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	32.69%
Lentic	Environmental → Aquatic → Freshwater → Lentic	28.85%
Lake	Environmental → Aquatic → Freshwater → Lake	24.04%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	3.85%
Unclassified	Environmental → Aquatic → Marine → Unclassified	3.85%
Clay	Environmental → Terrestrial → Soil → Clay	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	1.92%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.96%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	32.69%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	26.92%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	23.08%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	3.85%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	2.88%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	1.92%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	1.92%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.96%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.96%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.96%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	0.96%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	32.69%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	25.00%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	11.54%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	6.73%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	3.85%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	2.88%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	2.88%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	1.92%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	1.92%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.92%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	1.92%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	1.92%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.96%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	0.96%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.96%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine	0.96%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000792	Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 02_21m	Environmental	Open in IMG/M
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300004793	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006810	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01	Environmental	Open in IMG/M
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental	Open in IMG/M
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental	Open in IMG/M
3300007540	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG	Environmental	Open in IMG/M
3300007541	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG	Environmental	Open in IMG/M
3300007542	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG	Environmental	Open in IMG/M
3300007640	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28	Environmental	Open in IMG/M
3300007960	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG	Environmental	Open in IMG/M
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental	Open in IMG/M
3300008120	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA	Environmental	Open in IMG/M
3300008448	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs	Environmental	Open in IMG/M
3300009059	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703	Environmental	Open in IMG/M
3300011011	Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Top - Depth 1m	Environmental	Open in IMG/M
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental	Open in IMG/M
3300013126 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m	Environmental	Open in IMG/M
3300013129 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 10cm	Environmental	Open in IMG/M
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental	Open in IMG/M
3300016749	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011512AT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017701	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N	Environmental	Open in IMG/M
3300017722	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017723	Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N	Environmental	Open in IMG/M
3300017754	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D	Environmental	Open in IMG/M
3300017761	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017766	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D	Environmental	Open in IMG/M
3300017778	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017780	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N	Environmental	Open in IMG/M
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental	Open in IMG/M
3300017950	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)	Environmental	Open in IMG/M
3300019783	Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM110.S.N	Environmental	Open in IMG/M
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental	Open in IMG/M
3300020151	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1	Environmental	Open in IMG/M
3300020159	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1	Environmental	Open in IMG/M
3300020161	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1	Environmental	Open in IMG/M
3300020162	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1	Environmental	Open in IMG/M
3300020172	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1	Environmental	Open in IMG/M
3300020542	Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020556	Freshwater microbial communities from Lake Mendota, WI - 03AUG2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300021092	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015021 Mahale Deep Cast 10m	Environmental	Open in IMG/M
3300021961	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D	Environmental	Open in IMG/M
3300022063	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2)	Environmental	Open in IMG/M
3300022168	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v2)	Environmental	Open in IMG/M
3300022176	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)	Environmental	Open in IMG/M
3300022190	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N	Environmental	Open in IMG/M
3300022198	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)	Environmental	Open in IMG/M
3300022407	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D	Environmental	Open in IMG/M
3300024239	Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E	Environmental	Open in IMG/M
3300024262	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)	Environmental	Open in IMG/M
3300025646	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025647	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025671	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)	Environmental	Open in IMG/M
3300025889	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)	Environmental	Open in IMG/M
3300027707	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes)	Environmental	Open in IMG/M
3300027744	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN (SPAdes)	Environmental	Open in IMG/M
3300031565	Soil microbial communities from Risofladan, Vaasa, Finland - UN-2	Environmental	Open in IMG/M
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental	Open in IMG/M
3300031669	Soil microbial communities from Risofladan, Vaasa, Finland - TR-1	Environmental	Open in IMG/M
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental	Open in IMG/M
3300033993	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037	Environmental	Open in IMG/M
3300033994	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046	Environmental	Open in IMG/M
3300033995	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056	Environmental	Open in IMG/M
3300034051	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13May2013-rr0097	Environmental	Open in IMG/M
3300034060	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16May2013-rr0016	Environmental	Open in IMG/M
3300034102	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112	Environmental	Open in IMG/M
3300034103	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119	Environmental	Open in IMG/M
3300034112	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191	Environmental	Open in IMG/M
3300034122	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2014-rr0181	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
BS_KBA_SWE02_21mDRAFT_101188742	3300000792	Marine	MILPFGMNNGENIPNKRRNKEEGHLAQLVRRKMTQKSHGDDSKFNRNKLKREDLKGPHYIPSL*
B570J29032_1090704892	3300002408	Freshwater	MILKIGLMMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYISV*
B570J40625_1009304563	3300002835	Freshwater	MMKMNIPNKRRNTEEGHLANLIRRKMIAKNHGDKKKFSRNELKREDLKGPHYISI*
Ga0007760_100362453	3300004793	Freshwater Lake	MKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYISV*
Ga0070749_100959436	3300006802	Aqueous	GMSNGKNIPNKRRPRTEGHLAQLIRRKMTQKSHCKIKFDRNELKREDRKGPHYIVTL*
Ga0070749_101117975	3300006802	Aqueous	MNMYFGMNSGKKIPNQRRTRTEGHLAQLIRRKMIQKNHSENKFNRNKIKREDRKGPHYILA*
Ga0070749_103123471	3300006802	Aqueous	SGKKIPNQRRTRTEGHMAQLIRRKMIQKSHSENKFDRNKLKREDRKGPHYILVL*
Ga0070749_103413504	3300006802	Aqueous	SGKKIPNQRRKRTEGHMAQLIRRKMIQKSHSENKFDRNKIKREDRKGPHYIVVL*
Ga0070754_102111011	3300006810	Aqueous	MYFGMNSGKKIPNQRRKRTEGHMAQLIRRKMIQKSHSENKFDRNKIKREDRKGPHYI
Ga0070754_104958742	3300006810	Aqueous	MNSGKKIPNQRRTRTEGHMAQLIRRKMIQKSHSENKFDRNKIKREDRKGPHYIVVL*
Ga0070746_102984562	3300006919	Aqueous	MNMYFGMSNGKNIPNKRRPRTEGHLAQLIRRKMTQKSHSKIKFDRNELKREDRKGPHYIVTL*
Ga0099851_10830794	3300007538	Aqueous	MMNGKKIPNQKRTQTEGHLAQLIRRKMIQKSHSENKFNRNQLKREDRKGPHYISFV*
Ga0099851_12175672	3300007538	Aqueous	MKMEIPNKRRSTEEGHMANMIRRKMISKNHGDKKKFSRNELKREDQKGPHYILA*
Ga0099851_12626102	3300007538	Aqueous	MKPIPNKRRSTEEGHLAALVRRKMIAKNHGDKKKFSRNELKREDRKGPHYILA*
Ga0099847_10229796	3300007540	Aqueous	MYFGMNSGKKIPNQRRTRTEGHMAQLIRRKMIQKSHSENKFDRNKLKREDRKGPHYILTL
Ga0099847_10327315	3300007540	Aqueous	MYFGMSNGKNIPNKRRPRTEGHLAQLIRRKMIQKTHSKSKFDRNELKREDRK
Ga0099848_11526404	3300007541	Aqueous	ILTMKDIPNKRRSTEEGHLANLIRRKMISRDHGDKKKFSRSELKREDRKGPHYILA*
Ga0099848_11590662	3300007541	Aqueous	MKPIPNKRRSTEEGHLAALVRRKMIAKNHGDKKKFNRSELKREDRKGPHYILA*
Ga0099848_11705221	3300007541	Aqueous	MKILAMKDIPNKRRSTEEGHLANLIRRKMISKDHGDKKKFSRNELKREDRKGPYYVSVC*
Ga0099846_10035513	3300007542	Aqueous	MNMYFGMSNGKNIPNKRRPRTEGHLAQLIRRKMIQKTHSKSKFDRNELKREDRKGPHYIYKQLKSFINE*
Ga0099846_10960661	3300007542	Aqueous	MKPIPNKRRSTEEGHLAALVRRKMIAKNHGDKKKFSRSELKREDRKGLHYILA*
Ga0099846_12897841	3300007542	Aqueous	NQKRTQTEGHLAQLIRRKMIQKSHSENKFNRNQLKREDRKGPHYISFV*
Ga0070751_12349562	3300007640	Aqueous	MNSGKKIPNQRRKRTEGHMAQLIRRKMIQKSHSENKFDRNKIKREDRKGPHYIVVL*
Ga0070751_13075221	3300007640	Aqueous	KIPNKRRSTEEGHMANMIRRKMISKNHGDKKKFSRNELKREDQKGPHYILA*
Ga0099850_13411723	3300007960	Aqueous	YFGMSNGKNIPNKRRPRTEGHLAQLIRRKMTQKSHSENKFNRNELKREDRKGPHYIY*
Ga0114340_11480281	3300008107	Freshwater, Plankton	MKPIPNKRRSTEEGHLAALVRRKMIAKDHGDKKKFNRSELKREDRKGPHYIFV*
Ga0114340_12310622	3300008107	Freshwater, Plankton	MKPIPNKRRSTEEGHLAALVRRKMIAKDHGDKKKFSRNELKREDRKGPHYILA*
Ga0114355_100436011	3300008120	Freshwater, Plankton	MKPIPNKRRSTEEGHLAALVRRKMIAKDHGNKKKFSRNELKREDRKGPHYILA*
Ga0114876_12017182	3300008448	Freshwater Lake	MKITMMKDIPNKRRSTEEGHLANLIRRKMISRDHGDKKKFSRSELKREDRKGPHYIFA*
Ga0102830_12257693	3300009059	Estuarine	MKPIPNKLLDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYISL*
Ga0139556_10729343	3300011011	Freshwater	RRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYISV*
Ga0164293_108595151	3300013004	Freshwater	KIGLMMKKIPQSRRDTEEGHLANLIRRKMIAKNHGDKKKFSRNELKREDLKGPHYISV*
(restricted) Ga0172367_101813342	3300013126	Freshwater	MKPIPNKRRSTEEGHLAALIRRKMTSRDHGDKKKFNRSKLKREDQKGPHYILV*
(restricted) Ga0172367_102608482	3300013126	Freshwater	MKPIPNKRRSTEEGHLAALVRRKMIERNHGDKKKFSRNELKREDRKGPHYILA*
(restricted) Ga0172364_103836571	3300013129	Sediment	NKRRSTEEGHLAALIRRKMTSRDHGDKKKFNRSKLKREDQKGPHYILV*
Ga0177922_100488961	3300013372	Freshwater	MKDIPNKRRSTEEGHLANLIRRKMIARDHGDKKKFNRSELKREDRKGPHYIIAWS
Ga0182053_13517231	3300016749	Salt Marsh	MKNGKNIPNKRRNKEEGHLAQLVRRKMIQRDHGDCSKFDRNKLKREDRKGPHYILAL
Ga0181364_10458351	3300017701	Freshwater Lake	QYLWKMILKIGPMMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYISL
Ga0181364_10491872	3300017701	Freshwater Lake	QYLWKMILKIGPMMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKDPHYISI
Ga0181347_11086023	3300017722	Freshwater Lake	MMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKSPHYI
Ga0181362_10524235	3300017723	Freshwater Lake	MKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYISL
Ga0181344_11906532	3300017754	Freshwater Lake	MTILKILMMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYIS
Ga0181356_12537301	3300017761	Freshwater Lake	SRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYISI
Ga0181343_12101001	3300017766	Freshwater Lake	PIPNKRRSTEEGHLANLIRRKMISRDHGDKKKFSRNELKREDRKGPHYIIV
Ga0181349_11666392	3300017778	Freshwater Lake	MKTTKMKIPNKRRSTDEGHLAALVRRKMISRDHGDKKKFSRNELKREDRKGPHYIIV
Ga0181346_10588216	3300017780	Freshwater Lake	PSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYISV
Ga0181346_11878242	3300017780	Freshwater Lake	MKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYISI
Ga0181346_12008222	3300017780	Freshwater Lake	LKIGPMMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPYYISL
Ga0181355_11663792	3300017785	Freshwater Lake	MKPIPNKRRSTEEGHLAALIRRKMIARDHGNKRKFSRNELKREDRKGPHYILA
Ga0181607_100200677	3300017950	Salt Marsh	MKNGKNIPNKRRSKEEGHMSQLIRRKMIQKNHGDENKFDRNKLKNRDRKDPLYML
Ga0181361_1137402	3300019783	Freshwater Lake	MILKIGRMMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYIS
Ga0181359_11253251	3300019784	Freshwater Lake	MKPIPNKRRSTEEGHLANLIRRKMISRDHGDKKKFNRSELKREDRKGPHYIIVC
Ga0181359_11573113	3300019784	Freshwater Lake	MILKIVRMMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKSPHYIS
Ga0181359_12628592	3300019784	Freshwater Lake	VILKIGRMMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYIS
Ga0211736_104068662	3300020151	Freshwater	MILKIGRMMKKIPNNRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYIS
Ga0211734_110746742	3300020159	Freshwater	MILKILMMKKIPQNRRDTEEGHLANLIRRKMIARDHGDKKKFSRSELKREDRKGPHYILA
Ga0211726_105593634	3300020161	Freshwater	MILKIGRMMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNEL
Ga0211735_104311141	3300020162	Freshwater	MILKILMMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYISV
Ga0211729_109724473	3300020172	Freshwater	LWEVILKILMMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYIFV
Ga0208857_10272492	3300020542	Freshwater	MILKIGLMMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYIS
Ga0208486_10204664	3300020556	Freshwater	VILKIGLMMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYIS
Ga0194122_102428841	3300021092	Freshwater Lake	MKPIPNKRRSTEEGHLAALVRRKMIERDHGDKKKFSRNELKREDRKGPHYILT
Ga0222714_1001475110	3300021961	Estuarine Water	KRRTRTEGHLAQLIRRKMTQKSHSKIKFDRNELKREDRKGPHYILA
Ga0222714_1002401815	3300021961	Estuarine Water	KRRTRTEGHLAQLIRRKMTQKSHSKIKFDRNELKREDRKGPHYIITL
Ga0222714_100319338	3300021961	Estuarine Water	MKITMMKDIPNKRRSTEEGHMANLIRRKMISKNHGDKKKFNRSELKREDRKGPHYIIV
Ga0222714_103020631	3300021961	Estuarine Water	MYFGMSNGKNIPNKRRTRTEGHLAQLIRRKMTQKSHSKIKFDRNELKREDRKGP
Ga0212029_10176101	3300022063	Aqueous	NKRRSTEEGHLANLIRRKMISKDHGDKKKFSRNELKREDRKGPHYISVC
Ga0212027_10131965	3300022168	Aqueous	MYFGMNSGKKIPNQRRKRTEGHMAQLIRRKMIQKSHSENKFDRNKIKREDRKGPHYIVVL
Ga0212031_10373051	3300022176	Aqueous	SMMNGKKIPNQKRTQTEGHLAQLIRRKMIQKSHSENKFNRNQLKREDRKGPHYISFI
Ga0212031_10451113	3300022176	Aqueous	KIPNQRRKRTEGHMAQLIRRKMIQKSHSENKFDRNKIKREDRKGPHYIVVL
Ga0181354_10554005	3300022190	Freshwater Lake	MILKIGRMMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKDPHYIS
Ga0181354_11375583	3300022190	Freshwater Lake	MKPIPNKRRSTEEGHLAALIRRKMTSRDHGDKRKFSRNELKREDRKGPHYILA
Ga0196905_100133319	3300022198	Aqueous	MNMYFGMSNGKNIPNKRRPRTEGHLAQLIRRKMIQKTHSKSKFDRNELKREDRKGPHYIYKQLKSFINE
Ga0196905_10051724	3300022198	Aqueous	MNMYFGMSNGKNIPNKRRTRTEGHLAQLIRRKMTQKSHSKIKFDRNELKREDRKSPHYIY
Ga0181351_10312685	3300022407	Freshwater Lake	MILKIGPMMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYIS
Ga0181351_10532732	3300022407	Freshwater Lake	MILKIGPMMKNIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYIS
Ga0181351_11591912	3300022407	Freshwater Lake	LKIGPMMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYISL
Ga0181351_11765784	3300022407	Freshwater Lake	KITKMKIPNKRRSTDEGHLAALVRRKMIAKNHGDKKKFNRSELKREDRKGPHYILA
Ga0181351_12340332	3300022407	Freshwater Lake	VILKIGRMMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKSPHYIS
Ga0247724_10660423	3300024239	Deep Subsurface Sediment	MKTTKMKIPNKRRSTDEGHLAALVRRKMIAKNHGDKKKFNRSELKREDRKGPHYILA
Ga0210003_10487262	3300024262	Deep Subsurface	MILPFGMNNGENIPNKRRNKEEGHLAQLVRRKMTQKSHGDDSKFNRNKLKREDLKGPHYIPSL
Ga0208161_10204535	3300025646	Aqueous	MYFGMNSGKKIPNQRRTRTEGHMAQLIRRKMIQKSHSENKFDRNKIKREDRKGPHYIVVL
Ga0208161_10216996	3300025646	Aqueous	MILFISMMNGKKIPNQKRTQTEGHLAQLIRRKMIQKSHSENKFNRNQLKREDRKGPHYISFI
Ga0208161_10264354	3300025646	Aqueous	MMNGKKIPNQKRTQTEGHLAQLIRRKMIQKSHSENKFNRNQLKREDRKGPHYISFV
Ga0208160_10031285	3300025647	Aqueous	MNMYFGMSNGKNIPNKRRTRTEGHLAQLIRRKMTQKSHSKIKFDRNELKREDRKGPHYIY
Ga0208898_10061331	3300025671	Aqueous	GKKIPNQRRKRTEGHMAQLIRRKMIQKSHSENKFDRNKIKREDRKGPHYILTL
Ga0208644_10490015	3300025889	Aqueous	MNMYFGMNSGKKIPNQRRTRTEGHLAQLIRRKMIQKNHSENKFNRNKIKREDRKGPHYIL
Ga0208644_10533062	3300025889	Aqueous	MYFGMNSGKKIPNQRRKRTEGHMAQLIRRKMIQKSHSENKFDRNKIKREDRKGPHYILTL
Ga0209443_12066831	3300027707	Freshwater Lake	YLWKMILKIGRMMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYISL
Ga0209355_13621363	3300027744	Freshwater Lake	KIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYISL
Ga0307379_100494964	3300031565	Soil	MILPFGMNNGENIPNKRRNKEEGHLAQLVRRKMTQKSHGDDSKFNRNKLKREDRKGPHYIPSL
Ga0307376_108781891	3300031578	Soil	PNKRRNKEEGHLAQLVRRKMTQKSHGDDSKFNRNKLKREDRKGPHYIPSL
Ga0307375_104054022	3300031669	Soil	MKPIPNKRRSTEEGHLAALVRRKMIAKDHGDKKKFSRNELKREDRKGPHYILA
Ga0315901_104378611	3300031963	Freshwater	IGLMMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYISV
Ga0315901_109563983	3300031963	Freshwater	RRSTEEGHLANLIRRKMISRDHGDKKKFSRNELKREDRKGPHYIFA
Ga0334994_0231801_344_508	3300033993	Freshwater	MMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYISV
Ga0334996_0242474_52_210	3300033994	Freshwater	MNIPNKRRNTEEGHLANLIRRKMIAKNHGDKKKFSRNELKREDLKGPHYISI
Ga0335003_0217644_379_543	3300033995	Freshwater	MKMNIPNKRRNTEEGHLANLIRRKMIAKNHGDKKKFSRNELKREDLKGPHYISI
Ga0335024_0582500_394_537	3300034051	Freshwater	MNILNKRRNTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPH
Ga0334983_0531049_505_654	3300034060	Freshwater	MKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPH
Ga0335029_0684796_285_449	3300034102	Freshwater	MMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFNRNELKRGDLKGPHYISI
Ga0335030_0433516_66_230	3300034103	Freshwater	MKMNILNKRRNTEEGHLANLIRRKMIAKNHGDKKKFSRNELKREDLKGPHYISI
Ga0335066_0504992_471_635	3300034112	Freshwater	MMKKIPQSRRDTEEGHLANLIRRKMISKNHGDKKKFSRNELKREDLKGPHYISI
Ga0335060_0205236_385_552	3300034122	Freshwater	MMKMNIPNKRRNTEEGHLANLIRRKMIAKNHGDKKKFSRNELKREDLKGPHYISV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters