NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F096923

Metagenome / Metatranscriptome Family F096923

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096923
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 46 residues
Representative Sequence MKTIGIVLLWFVFIGVLASFVSCASGHHCDAYGQTKQVETKTVSK
Number of Associated Samples 79
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 24.04 %
% of genes from short scaffolds (< 2000 bps) 70.19 %
Associated GOLD sequencing projects 73
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (72.115 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(36.538 % of family members)
Environment Ontology (ENVO) Unclassified
(65.385 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(68.269 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 54.79%    β-sheet: 0.00%    Coil/Unstructured: 45.21%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF01832Glucosaminidase 8.65
PF04851ResIII 3.85
PF12705PDDEXK_1 2.88
PF02617ClpS 0.96
PF00136DNA_pol_B 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG0417DNA polymerase B elongation subunitReplication, recombination and repair [L] 0.96
COG2127ATP-dependent Clp protease adapter protein ClpSPosttranslational modification, protein turnover, chaperones [O] 0.96


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A72.12 %
All OrganismsrootAll Organisms27.88 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000126|BS_KBB_SWE26_205mDRAFT_c1005039All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium2380Open in IMG/M
3300000736|JGI12547J11936_1005142All Organisms → cellular organisms → Bacteria3562Open in IMG/M
3300001968|GOS2236_1010774All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium1760Open in IMG/M
3300002835|B570J40625_100980030Not Available724Open in IMG/M
3300004792|Ga0007761_10037347All Organisms → cellular organisms → Bacteria3413Open in IMG/M
3300004793|Ga0007760_10012657All Organisms → Viruses → Predicted Viral1974Open in IMG/M
3300005527|Ga0068876_10017437All Organisms → cellular organisms → Bacteria4575Open in IMG/M
3300005527|Ga0068876_10333864Not Available855Open in IMG/M
3300005662|Ga0078894_11228434Not Available634Open in IMG/M
3300006802|Ga0070749_10036978Not Available3015Open in IMG/M
3300006919|Ga0070746_10011296All Organisms → cellular organisms → Bacteria5049Open in IMG/M
3300007541|Ga0099848_1008988All Organisms → cellular organisms → Bacteria4445Open in IMG/M
3300007974|Ga0105747_1158481Not Available733Open in IMG/M
3300008107|Ga0114340_1062967All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium1586Open in IMG/M
3300008108|Ga0114341_10025003All Organisms → Viruses → Predicted Viral4152Open in IMG/M
3300008262|Ga0114337_1008634All Organisms → cellular organisms → Bacteria7114Open in IMG/M
3300008262|Ga0114337_1065341Not Available1825Open in IMG/M
3300008266|Ga0114363_1008614All Organisms → cellular organisms → Bacteria7605Open in IMG/M
3300008266|Ga0114363_1135853Not Available834Open in IMG/M
3300008267|Ga0114364_1004305All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium7490Open in IMG/M
3300008448|Ga0114876_1031596Not Available2582Open in IMG/M
3300008448|Ga0114876_1037516All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin0282303Open in IMG/M
3300008448|Ga0114876_1051740All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium1850Open in IMG/M
3300008448|Ga0114876_1131550Not Available943Open in IMG/M
3300008448|Ga0114876_1225607Not Available607Open in IMG/M
3300009085|Ga0105103_10295412Not Available882Open in IMG/M
3300009149|Ga0114918_10732041Not Available517Open in IMG/M
3300009180|Ga0114979_10018146Not Available4510Open in IMG/M
3300009529|Ga0114919_10259880Not Available1226Open in IMG/M
3300010233|Ga0136235_1038346Not Available949Open in IMG/M
3300012012|Ga0153799_1000614All Organisms → cellular organisms → Bacteria11382Open in IMG/M
3300012013|Ga0153805_1031707Not Available899Open in IMG/M
3300012017|Ga0153801_1034154Not Available898Open in IMG/M
3300012711|Ga0157607_1116672Not Available586Open in IMG/M
3300012719|Ga0157600_1128366Not Available534Open in IMG/M
3300012725|Ga0157610_1086985Not Available2612Open in IMG/M
3300012733|Ga0157606_1328882Not Available563Open in IMG/M
3300012752|Ga0157629_1032511Not Available577Open in IMG/M
3300013372|Ga0177922_10186447Not Available705Open in IMG/M
3300015050|Ga0181338_1002083Not Available3522Open in IMG/M
3300015050|Ga0181338_1009705Not Available1590Open in IMG/M
3300017700|Ga0181339_1011939Not Available1010Open in IMG/M
3300017700|Ga0181339_1032145Not Available575Open in IMG/M
3300017716|Ga0181350_1028522Not Available1542Open in IMG/M
3300017716|Ga0181350_1057361Not Available1021Open in IMG/M
3300017736|Ga0181365_1122783Not Available622Open in IMG/M
3300017754|Ga0181344_1023476All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium1904Open in IMG/M
3300017754|Ga0181344_1024874Not Available1844Open in IMG/M
3300017754|Ga0181344_1051218Not Available1232Open in IMG/M
3300017754|Ga0181344_1055531Not Available1177Open in IMG/M
3300017754|Ga0181344_1100152Not Available842Open in IMG/M
3300017754|Ga0181344_1181511Not Available594Open in IMG/M
3300017761|Ga0181356_1186900Not Available621Open in IMG/M
3300017761|Ga0181356_1215008Not Available562Open in IMG/M
3300017761|Ga0181356_1215076Not Available562Open in IMG/M
3300017766|Ga0181343_1154330Not Available639Open in IMG/M
3300017777|Ga0181357_1019571Not Available2693Open in IMG/M
3300017784|Ga0181348_1193776Not Available733Open in IMG/M
3300019781|Ga0181360_106026All Organisms → Viruses → Predicted Viral1026Open in IMG/M
3300019783|Ga0181361_101594All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin0281611Open in IMG/M
3300019783|Ga0181361_102746Not Available1298Open in IMG/M
3300019783|Ga0181361_114064Not Available629Open in IMG/M
3300019784|Ga0181359_1004929All Organisms → cellular organisms → Bacteria4290Open in IMG/M
3300019784|Ga0181359_1067693Not Available1356Open in IMG/M
3300020511|Ga0208593_1041247Not Available517Open in IMG/M
3300022173|Ga0181337_1029890Not Available727Open in IMG/M
3300022190|Ga0181354_1185586Not Available629Open in IMG/M
3300024262|Ga0210003_1056734Not Available1959Open in IMG/M
3300024433|Ga0209986_10325597Not Available720Open in IMG/M
3300024555|Ga0255280_1004931Not Available2604Open in IMG/M
3300024556|Ga0256341_1021123Not Available1371Open in IMG/M
3300024557|Ga0255283_1094007Not Available644Open in IMG/M
3300024859|Ga0255278_1106022Not Available542Open in IMG/M
3300025646|Ga0208161_1091651Not Available856Open in IMG/M
3300025769|Ga0208767_1017469All Organisms → cellular organisms → Bacteria4118Open in IMG/M
3300027468|Ga0209247_1038552Not Available677Open in IMG/M
3300027656|Ga0209357_1124559Not Available706Open in IMG/M
3300027763|Ga0209088_10000030Not Available113521Open in IMG/M
3300027772|Ga0209768_10366886Not Available583Open in IMG/M
3300027785|Ga0209246_10030230Not Available2059Open in IMG/M
3300027797|Ga0209107_10000011All Organisms → cellular organisms → Bacteria114922Open in IMG/M
3300027816|Ga0209990_10226260Not Available859Open in IMG/M
3300027816|Ga0209990_10362006Not Available638Open in IMG/M
3300027899|Ga0209668_10021755All Organisms → Viruses → Predicted Viral3179Open in IMG/M
(restricted) 3300027977|Ga0247834_1095601Not Available1346Open in IMG/M
3300031539|Ga0307380_10058115Not Available4201Open in IMG/M
3300031539|Ga0307380_11434081Not Available518Open in IMG/M
3300031565|Ga0307379_10230602All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Lewinellaceae → Lewinella → Lewinella agarilytica1872Open in IMG/M
3300031578|Ga0307376_10826737Not Available570Open in IMG/M
3300031673|Ga0307377_10350513All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium1107Open in IMG/M
3300031784|Ga0315899_11251402Not Available639Open in IMG/M
3300031787|Ga0315900_10002534Not Available27705Open in IMG/M
3300031963|Ga0315901_10056003All Organisms → cellular organisms → Bacteria3834Open in IMG/M
3300032093|Ga0315902_10446646Not Available1148Open in IMG/M
3300033994|Ga0334996_0128687Not Available1437Open in IMG/M
3300033996|Ga0334979_0000025All Organisms → cellular organisms → Bacteria117565Open in IMG/M
3300033996|Ga0334979_0105334All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Lewinellaceae → Lewinella → Lewinella agarilytica1751Open in IMG/M
3300034071|Ga0335028_0133440All Organisms → Viruses → Predicted Viral1595Open in IMG/M
3300034104|Ga0335031_0286759Not Available1077Open in IMG/M
3300034118|Ga0335053_0321962Not Available963Open in IMG/M
3300034272|Ga0335049_0088000Not Available2273Open in IMG/M
3300034272|Ga0335049_0675885Not Available629Open in IMG/M
3300034272|Ga0335049_0704398Not Available611Open in IMG/M
3300034418|Ga0348337_038175Not Available2094Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake36.54%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater14.42%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton6.73%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous5.77%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake4.81%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil4.81%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater3.85%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater3.85%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface3.85%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater2.88%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater1.92%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake1.92%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.96%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment0.96%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment0.96%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment0.96%
FreshwaterEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater0.96%
Surface IceEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice0.96%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.96%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.96%
MarineEnvironmental → Aquatic → Marine → Wetlands → Sediment → Marine0.96%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000126Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBB sample SWE 26_20.5mEnvironmentalOpen in IMG/M
3300000736Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011EnvironmentalOpen in IMG/M
3300001968Marine microbial communities from Lake Gatun, Panama - GS020EnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300004792Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004793Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005527Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaGEnvironmentalOpen in IMG/M
3300005662Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)EnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300007541Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaGEnvironmentalOpen in IMG/M
3300007974Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2umEnvironmentalOpen in IMG/M
3300008107Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NAEnvironmentalOpen in IMG/M
3300008108Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NAEnvironmentalOpen in IMG/M
3300008262Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-C-NAEnvironmentalOpen in IMG/M
3300008266Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300008267Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTREnvironmentalOpen in IMG/M
3300008448Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigsEnvironmentalOpen in IMG/M
3300009085Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015EnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300009180Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaGEnvironmentalOpen in IMG/M
3300009529Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaGEnvironmentalOpen in IMG/M
3300010233Filterable freshwater microbial communities from Conwy River, North Wales, UK. Fraction, filtered through 0.2 um filter. After WGA.EnvironmentalOpen in IMG/M
3300012012Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012013Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface IceEnvironmentalOpen in IMG/M
3300012017Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012711Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES133 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012719Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES123 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012725Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES137 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012733Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES131 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012752Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES162 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300015050Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017700Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.D.DEnvironmentalOpen in IMG/M
3300017716Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.DEnvironmentalOpen in IMG/M
3300017736Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.NEnvironmentalOpen in IMG/M
3300017754Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.DEnvironmentalOpen in IMG/M
3300017761Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017766Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.DEnvironmentalOpen in IMG/M
3300017777Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300019781Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM15.S.DEnvironmentalOpen in IMG/M
3300019783Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020511Freshwater microbial communities from Lake Mendota, WI - 15JUL2010 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300022173Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM15.D.DEnvironmentalOpen in IMG/M
3300022190Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.NEnvironmentalOpen in IMG/M
3300024262Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024433Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024555Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepB_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024556Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepB_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024557Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepA_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024859Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025646Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300027468Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027656Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027763Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027772Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027785Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027797Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)EnvironmentalOpen in IMG/M
3300027816Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027899Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)EnvironmentalOpen in IMG/M
3300027977 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_12mEnvironmentalOpen in IMG/M
3300031539Soil microbial communities from Risofladan, Vaasa, Finland - UN-3EnvironmentalOpen in IMG/M
3300031565Soil microbial communities from Risofladan, Vaasa, Finland - UN-2EnvironmentalOpen in IMG/M
3300031578Soil microbial communities from Risofladan, Vaasa, Finland - TR-2EnvironmentalOpen in IMG/M
3300031673Soil microbial communities from Risofladan, Vaasa, Finland - TR-3EnvironmentalOpen in IMG/M
3300031784Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112EnvironmentalOpen in IMG/M
3300031787Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114EnvironmentalOpen in IMG/M
3300031963Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116EnvironmentalOpen in IMG/M
3300032093Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117EnvironmentalOpen in IMG/M
3300033994Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046EnvironmentalOpen in IMG/M
3300033996Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004EnvironmentalOpen in IMG/M
3300034071Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110EnvironmentalOpen in IMG/M
3300034104Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120EnvironmentalOpen in IMG/M
3300034118Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165EnvironmentalOpen in IMG/M
3300034272Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156EnvironmentalOpen in IMG/M
3300034418Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
BS_KBB_SWE26_205mDRAFT_100503923300000126MarineMKTIGIVLAWFVFIGLLASFVSCSSTVHCDAYGQTEQVQNKSVSK*
JGI12547J11936_100514223300000736Freshwater And SedimentMKTIAIVVLWFVFIGVLATFVSCASGHHCDAYGQTKQVETKTVSK*
GOS2236_101077433300001968MarineMKTVGILVLWFASIITLAVLVSCGSTHHCDAYGQTEHIQNKSVSK*
B570J40625_10098003023300002835FreshwaterMKTIGIVLLWFVFIGILASFVSCASGHQCDAYGQEKQIETKTVSK*
Ga0007761_1003734753300004792Freshwater LakeMKTIGIVILWFVFVGALASLVSCSSAVHCDAYGQTKQIETKTVSK*
Ga0007760_1001265753300004793Freshwater LakeMIMKTIAIVLLWFVFIGVLASFVSCASGHHCDAYGQTKQVETKTVSK*
Ga0068876_1001743783300005527Freshwater LakeMKTIGIVLAWFVFIGVLASFVSCSSTVHCDAYGQTEQVQNKTVSK*
Ga0068876_1033386423300005527Freshwater LakeMKTIGIVLLWFVFIGILASFVSCASGHQCDAYGQTEQVENRTVSK*
Ga0078894_1122843433300005662Freshwater LakeMKTIGIVLLWFVFIGVLASFVSCASGHHCDAYGQTKQVETKTVSK*
Ga0070749_1003697843300006802AqueousMKTIGIVVLWFVFIGVLASLVSCASGHHCDAYGQTKQVETKTVSK*
Ga0070746_1001129633300006919AqueousMKTIGIVVLWFVFIGVLASLVSCASGHHCDAYGQTKQVESKTVSR*
Ga0099848_100898833300007541AqueousMKTIGIIIAWFVFIGVLASFVSCSSTVHCDAYGQTEQLQNKSVSK*
Ga0105747_115848123300007974Estuary WaterMKTIGLVLLWFVVMGVLATFVSCGSAYHCDAYGQTEQVETKTVSR*
Ga0114340_106296773300008107Freshwater, PlanktonMIYPFNKIIMKTIGIVLAWFVFIGVLASFVSCSSTVHCDAYGQTEQVQNKTVSK*
Ga0114341_1002500373300008108Freshwater, PlanktonMIYPFNKIIMKTIGIVLAWFVFIGVLASFVSCSSTVHCDAYGQTEQVQNKSVSK*
Ga0114337_100863433300008262Freshwater, PlanktonMIYPFNKIIMKTIGIVLAWFVFIGVLASFVSCSSTVHCDAYGQTEQVQNKTISK*
Ga0114337_106534133300008262Freshwater, PlanktonMIMKTIGIVLLWFVFIGILASFVSCASGHQCDAYGQTEQVENRTVSK*
Ga0114363_100861413300008266Freshwater, PlanktonIMKTIGIVLLWFVFIGILASFVSCASGHQCDAYGQTEQVENRTVSK*
Ga0114363_113585313300008266Freshwater, PlanktonMKTIGIVLLWFVFIGILASFVSCASGHQCDAYGQTEQ
Ga0114364_1004305153300008267Freshwater, PlanktonMKTIGIVLLWFVFIGILASFVSCASGHHCDAYGQTKQVETKTVSK*
Ga0114876_103159663300008448Freshwater LakeMKTIGIVLLWFVFIGVLASFVSCASGHQCDAYGQTEQVENRTVSK*
Ga0114876_103751633300008448Freshwater LakeMKTIGIVLLWFVFIGVLASFVSCTTTHHCDAYGQTEQVQNKSVSK*
Ga0114876_105174073300008448Freshwater LakeIVLLWFVFIGILASFVSCASGHHCDAYGQTKQVETKTVSK*
Ga0114876_113155043300008448Freshwater LakeMKTIGIVLAWFLFIGVLASFVSCASSHHCDAYGQTEHVQNKSVSK*
Ga0114876_122560723300008448Freshwater LakeMKTIGIVLAWFVFIGVLASFVSCTTTHHCDAYGQTEQVQNKSVSK*
Ga0105103_1029541223300009085Freshwater SedimentMIMKAIGIVLLWFVVMGALATFVSCGSAHHCDAYGQTEQVETKTVSR*
Ga0114918_1073204123300009149Deep SubsurfaceMIMKTIGIVLAWFLFIGLLASFVSCSSTVHCDAYGQTEQVQNKSVSK*
Ga0114979_1001814633300009180Freshwater LakeMKTIAIVVLWFLFIGVLASFVSCGTTHHCDAYGQTKQVQNKTVSK*
Ga0114919_1025988043300009529Deep SubsurfaceMKTIGIVLAWFLFIGLLASFVSCGSSVHCDAYGQTEQVQNKSVSK*
Ga0136235_103834653300010233FreshwaterMKTVGIVLVWFVFIGILASFISCGSTIHCDAYGQTEQVQNKSVSK*
Ga0153799_1000614113300012012FreshwaterMKTIAIVVLWFVFIGVLATFVSCGSTHQCDAYGQTKQVETKTVSK*
Ga0153805_103170753300012013Surface IceVVLWFVFIGVLATFVSCGSTHQCDAYGQTKQVETKTVSK*
Ga0153801_103415423300012017FreshwaterMKTITIVLLWFVFIGVLASFVSCASGHQCDAYGQTKQVETKTVSK*
Ga0157607_111667233300012711FreshwaterFNKIIMKTIGIVLAWFVFIGVLASFVSCSSTVHCDAYGQTEQVQNKTVSK*
Ga0157600_112836633300012719FreshwaterFVFIGVLASFVSCSSTVHCDAYGQTEQVQNKTVSK*
Ga0157610_108698543300012725FreshwaterMIYPFNKIIMKTIGIVLAWFVFIGVLASFVSCSSTVHCDAYGQTEQ
Ga0157606_132888233300012733FreshwaterAWFVFIGVLASFVSCSSTVHCDAYGQTEQVQNKTVSK*
Ga0157629_103251113300012752FreshwaterIMKTIGIVLAWFVFIGVLASFVSCSSTVHCDAYGQTEQVQNKTVSK*
Ga0177922_1018644723300013372FreshwaterMKTIAIVLLWFVFIGVLASFVSCASGHQCDAYGQTKQVETKTVSK*
Ga0181338_100208333300015050Freshwater LakeMIMKAIGIVLLWFVFIGVLASFVSCSSAHHCDAYGQTEQVETKTISK*
Ga0181338_100970543300015050Freshwater LakeMIMKAIGIVLLWFVFIGVLASFVSCGSAHHCDAYGKTEQIETKTVSK*
Ga0181339_101193913300017700Freshwater LakeMKTIGIVLLWFVFIGVLASFVSCSSAHHCDAYGQTEQVDF
Ga0181339_103214533300017700Freshwater LakeMKAIGIVLLWFVVMGALATFVSCGSTHHCDAYGQTEQVETKTVSK
Ga0181350_102852223300017716Freshwater LakeMIMKTIGIVLLWFVFIGVLATFVSCGSTHQCDAYGQTKQVETKTVSK
Ga0181350_105736143300017716Freshwater LakeRFTLLKIMIMKAIGIVLLWFVFIGVLASFVSCGSAHHCDAYGKTEQIETKTVSK
Ga0181365_112278323300017736Freshwater LakeMKAIGIVLLWFVFIGVLASFVSCGSAHHCDAYGQTEQVETKTVSK
Ga0181344_102347633300017754Freshwater LakeMKTIGIVVLWFVFIGVLASFVSCASGHQCDAYGQTKQIETKTVSK
Ga0181344_102487443300017754Freshwater LakeMKTIAIVLGWFVFIGVLASLVSCGSSHHCDAYGNTEQVQTKNVSR
Ga0181344_105121833300017754Freshwater LakeMKTIGIVVLWFVFIGVLASFVSCASGHHCDAYGQTKQVETKTVSR
Ga0181344_105553153300017754Freshwater LakeMKTIGIVLLWFVFIGVLASFVSCASGHQCDAYGQTKQVQNKTVSK
Ga0181344_110015223300017754Freshwater LakeMKTIGIVLLWFVFIGVLASFVSCASGHHCDAYGQTKQVQTKNVSR
Ga0181344_118151123300017754Freshwater LakeMKTLGIVLLWFLFIGVLASFVSCASGHHCDAYGQTKQVQKKDISK
Ga0181356_118690043300017761Freshwater LakeLWFVFIGVLASFVSCASGHHCDAYGQTKQVETKTVSK
Ga0181356_121500823300017761Freshwater LakeMIMKTIAIVVLWFVFIGVLASFVSCASGHHCDAYGQTKQVETKTVSKXFT
Ga0181356_121507623300017761Freshwater LakeMIMKTIAIVLLWFVFIGVLASFVSCASGHHCDAYGQTKQVETKTVSKXFT
Ga0181343_115433033300017766Freshwater LakeMKTIGIVILWFVFIGVLASFVSCASGHHCDAYGQTKQVETKTVSKXFTESLEN
Ga0181357_101957163300017777Freshwater LakeMKAIGIVLLWFVFIGVLASFVSCGSAHHCDAYGKTKQIETKTVSK
Ga0181348_119377633300017784Freshwater LakeRFTLLKFMIMKAIGIVLLWFVFIGVLASFVSCGSTHQCDAYGQTKQVETKTVSK
Ga0181360_10602623300019781Freshwater LakeMIMKAIGIVLLWFVFIGVLASFVSCGSAHHCDAYGKTEQIETKTVSK
Ga0181361_10159423300019783Freshwater LakeMIMKAIGIVLLWFVVMGALATFVSCGSAHHCDAYGQTEQVETKTVSK
Ga0181361_10274623300019783Freshwater LakeMIMKTIGIVLLWFVFIGVLASFVSCSSAHHCDAYGQTEQVETKTISK
Ga0181361_11406433300019783Freshwater LakeMIMKAIGIVLLWFVFIGVLASFVSCGSAHHCDAYGQTEQVETKTVSK
Ga0181359_1004929103300019784Freshwater LakeMKTIGIVILWFVFVGALASLVSCSSAVHCDAYGQTKQIETKTVSK
Ga0181359_106769353300019784Freshwater LakeMIMKTIAIVLLWFVFIGVLASFVSCASGHHCDAYGQTKQVETKTVSK
Ga0208593_104124713300020511FreshwaterKKRVMKTIGIVLAWFVFIGVLASFVSCTTTHHCDAYGQTEQVQNKSVSK
Ga0181337_102989013300022173Freshwater LakeMKAIGIVLLWFVFIGVLASFVSCGSTHQCDAYGKTEQIETKTVSK
Ga0181354_118558633300022190Freshwater LakeMKTIAIVLLWFVFIGVLASFVSCASGHHCDAYGQTKQVETKTVSK
Ga0210003_105673453300024262Deep SubsurfaceMIMKTIGIVLAWFLFIGLLASFVSCSSTVHCDAYGQTEQVQNKSVSK
Ga0209986_1032559723300024433Deep SubsurfaceMIMKTIGIVLAWFLFIGLLASFVSCGSSVHCDAYGQTEQVQNKSVSK
Ga0255280_100493143300024555FreshwaterMKTVGILLLWFTSIITLAILVSCGSTHHCDAYGQTEHIQNKSVSK
Ga0256341_102112363300024556FreshwaterMKTIAIILAWFLFIGTLATLVSCASGHHCDAYGQTETIHSKTVSK
Ga0255283_109400743300024557FreshwaterMKTVGILLLWFTSIITLAILVSCGSTHHCDAYGQTEHIQNKSV
Ga0255278_110602223300024859FreshwaterMITSMKTVGILLLWFTSIITLAILVSCGSTHHCDAYGQTEHIQNKSVSK
Ga0208161_109165143300025646AqueousFKERIMKTIGIIIAWFVFIGVLASFVSCSSTVHCDAYGQTEQVQNKSVSK
Ga0208767_101746933300025769AqueousMKTIGIVVLWFVFIGVLASLVSCASGHHCDAYGQTKQVETKTVRN
Ga0209247_103855223300027468Freshwater LakeMKAIGIVLLWFVFIGVLASFVSCGSAHHCDAYGKTEQIETKTVSK
Ga0209357_112455943300027656Freshwater LakeVLLWFVFIGVLASFVSCASGHHCDAYGQTKQVETKTVSK
Ga0209088_10000030213300027763Freshwater LakeMIMKTIAIVVLWFLFIGVLASFVSCGTTHHCDAYGQTKQVQNKTVSK
Ga0209768_1036688633300027772Freshwater LakeLKIMIMKAIGIVLLWFVFIGVLASFVSCGSAHHCDAYGKTEQIETKTVSK
Ga0209246_1003023073300027785Freshwater LakeIMKAIGIVLLWFVFIGVLASFVSCGSTHQCDAYGQTKQVETKTVSK
Ga0209107_10000011193300027797Freshwater And SedimentMIMKTIAIVVLWFVFIGVLATFVSCASGHHCDAYGQTKQVETKTVSK
Ga0209990_1022626033300027816Freshwater LakeMKTIGIVLLWFVFIGILASFVSCASGHQCDAYGQTEQVENRTVSK
Ga0209990_1036200613300027816Freshwater LakeMKTIGIVLAWFVFIGVLASFVSCSSTVHCDAYGQTEQVQNKTVSK
Ga0209668_1002175533300027899Freshwater Lake SedimentMKTIGIVVLWFVFIGVLASFVSCASGHHCDAYGQTKQVETKTVSK
(restricted) Ga0247834_109560113300027977FreshwaterMKTVGIVLVWFVFIGILASFVSCGSSYHCDAYGQTEQVQNKSVSK
Ga0307380_10058115113300031539SoilMKTIGIVLAWFLFIGLLASFVSCSSTVHCDAYGQTEQVQNKSVSK
Ga0307380_1143408113300031539SoilMIMKTIGIVLAWFLFIGVLACFVSCGSTVHCDAYGQTEQVQNKSVSK
Ga0307379_1023060273300031565SoilLAWFVFIGLLASFVSCSSTVHCDAYGQTEQVQNKSVSK
Ga0307376_1082673733300031578SoilMKTIGIVLAWFLFIGILASFVSCSSTVHCDAYGQTEQVQNKSVSK
Ga0307377_1035051333300031673SoilMKTIGIVLLWFLFIGVIACFVSCGSSHHCDAYGQTEQVQNKSVSK
Ga0315899_1125140233300031784FreshwaterMKTIGIVLLWFVFIGVLASFVSCASGHQCDAYGQTEQVENRTVSK
Ga0315900_10002534363300031787FreshwaterMIMKTIGIVLLWFVFIGILASFVSCASGHQCDAYGQTEQVENRTVSK
Ga0315901_1005600393300031963FreshwaterMKTIGIVLAWFVFIGVLASFVSCSSTVHCDAYGQTEQVQNKSVSK
Ga0315902_1044664633300032093FreshwaterMKTIGIVLAWFVFIGVLASFVSCSSTVHCDAYGQTEQVQNKTIS
Ga0334996_0128687_764_9073300033994FreshwaterMIMKTIAIVLLWFVFIGVLASFVSCASGHQCDAYGQTKQVETKTVSK
Ga0334979_0000025_112538_1127023300033996FreshwaterMIYPFNKIIMKTIGIVLAWFVFIGVLASFVSCSSTVHCDAYGQTEQVQNKTVSK
Ga0334979_0105334_1281_14183300033996FreshwaterMKTIGIVLAWFVFIGVLASFVSCTTTHHCDAYGQTEQVQNKSVSK
Ga0335028_0133440_675_8123300034071FreshwaterMKTIGIVVLWFVFIGVLASFVSCASGHQCDAYGQTKQVETKTVSK
Ga0335031_0286759_201_3383300034104FreshwaterMKTIGIVILWFVFIGVLASFVSCASGHQCDAYSQEKQVETKTVSK
Ga0335053_0321962_845_9613300034118FreshwaterMKTIGIVLLWFVFIGILASFVSCASGHHCDAYGQTKQVE
Ga0335049_0088000_1016_11593300034272FreshwaterMIMKTIGIVLLWFVFIGILASFVSCASGHHCDAYGQTKQVETKTVSK
Ga0335049_0675885_369_5123300034272FreshwaterMIMKTIGLVLLWFVVMGALSTLVSCGSAHHCDAYGQTEQVETKTVSR
Ga0335049_0704398_253_3963300034272FreshwaterMIMKTIAIVLGWFVFIGVLASLVSCGSTHHCDAYGKTEQVQTKNVSR
Ga0348337_038175_385_5283300034418AqueousMIMKTIGIVVLWFVFIGVLASLVSCASGHHCDAYGQTKQVETKTVSK


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