Metagenome / Metatranscriptome Family F096958

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096958
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	62 residues
Representative Sequence	VQNNVLVNPDYTKAIARIVSAVAPFPEAREAVITALRDLEAASDPAPALVDHRVKGVVID
Number of Associated Samples	80
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	7.69 %
% of genes near scaffold ends (potentially truncated)	87.50 %
% of genes from short scaffolds (< 2000 bps)	93.27 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (60.577 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.923 % of family members)
Environment Ontology (ENVO)	Unclassified (38.462 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.577 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.23% β-sheet: 0.00% Coil/Unstructured: 64.77%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF03237	Terminase_6N	64.42
PF00239	Resolvase	2.88
PF00580	UvrD-helicase	0.96
PF13181	TPR_8	0.96
PF13358	DDE_3	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	2.88
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	2.88
COG0210	Superfamily I DNA or RNA helicase	Replication, recombination and repair [L]	0.96
COG1074	3Ã¢â‚¬â„¢-5Ã¢â‚¬â„¢ helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	Replication, recombination and repair [L]	0.96
COG3973	DNA helicase IV	Replication, recombination and repair [L]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
All Organisms	root	All Organisms	39.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
cellular organisms	root	All Organisms → cellular organisms	39.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	24.04 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23.08 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	18.27 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.96 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	15.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.96 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	10.58 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Bradyrhizobium sp. URHA0002	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	0.96 %
Bradyrhizobium sp. 44	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 44	0.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005165\|Ga0066869_10080950	Not Available	622	Open in IMG/M
3300005174\|Ga0066680_10493032	Not Available	771	Open in IMG/M
3300005179\|Ga0066684_10849168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	600	Open in IMG/M
3300005184\|Ga0066671_10911589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	556	Open in IMG/M
3300005187\|Ga0066675_10649502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	793	Open in IMG/M
3300005187\|Ga0066675_11278961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	542	Open in IMG/M
3300005332\|Ga0066388_107319168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	554	Open in IMG/M
3300005353\|Ga0070669_101053257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	699	Open in IMG/M
3300005406\|Ga0070703_10399357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	598	Open in IMG/M
3300005576\|Ga0066708_10869209	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300005764\|Ga0066903_103986379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	792	Open in IMG/M
3300005764\|Ga0066903_105657339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	657	Open in IMG/M
3300005764\|Ga0066903_105666592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	657	Open in IMG/M
3300005921\|Ga0070766_10290348	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300006797\|Ga0066659_11073551	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300006804\|Ga0079221_10402798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	849	Open in IMG/M
3300006844\|Ga0075428_102397181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	542	Open in IMG/M
3300006954\|Ga0079219_10709386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	767	Open in IMG/M
3300006954\|Ga0079219_10768997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	749	Open in IMG/M
3300006954\|Ga0079219_11361050	Not Available	630	Open in IMG/M
3300009012\|Ga0066710_103896908	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300009088\|Ga0099830_10291563	Not Available	1300	Open in IMG/M
3300009162\|Ga0075423_10273673	Not Available	1769	Open in IMG/M
3300009176\|Ga0105242_10231509	Not Available	1656	Open in IMG/M
3300010046\|Ga0126384_10593031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	969	Open in IMG/M
3300010359\|Ga0126376_11201534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	773	Open in IMG/M
3300010359\|Ga0126376_11345165	Not Available	736	Open in IMG/M
3300010361\|Ga0126378_11153956	Not Available	874	Open in IMG/M
3300010361\|Ga0126378_11930219	Not Available	672	Open in IMG/M
3300010361\|Ga0126378_12391671	Not Available	603	Open in IMG/M
3300010366\|Ga0126379_13269385	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300010376\|Ga0126381_100246764	Not Available	2417	Open in IMG/M
3300010376\|Ga0126381_100618735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1542	Open in IMG/M
3300010376\|Ga0126381_101143460	Not Available	1125	Open in IMG/M
3300010376\|Ga0126381_103900359	Not Available	582	Open in IMG/M
3300010396\|Ga0134126_11603035	Not Available	716	Open in IMG/M
3300010398\|Ga0126383_10526443	Not Available	1244	Open in IMG/M
3300010398\|Ga0126383_11052722	Not Available	903	Open in IMG/M
3300012169\|Ga0153990_1047123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	981	Open in IMG/M
3300012922\|Ga0137394_11155638	Not Available	638	Open in IMG/M
3300012925\|Ga0137419_11573007	Not Available	558	Open in IMG/M
3300012960\|Ga0164301_11840856	Not Available	510	Open in IMG/M
3300012971\|Ga0126369_12647748	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300012971\|Ga0126369_12753473	Not Available	575	Open in IMG/M
3300012987\|Ga0164307_11337511	Not Available	600	Open in IMG/M
3300015373\|Ga0132257_104177004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	525	Open in IMG/M
3300016294\|Ga0182041_10666967	Not Available	919	Open in IMG/M
3300016319\|Ga0182033_10170305	All Organisms → cellular organisms → Bacteria	1703	Open in IMG/M
3300016319\|Ga0182033_10833772	Not Available	814	Open in IMG/M
3300016341\|Ga0182035_10195557	Not Available	1595	Open in IMG/M
3300016341\|Ga0182035_10383102	All Organisms → cellular organisms → Bacteria	1177	Open in IMG/M
3300016341\|Ga0182035_11793985	Not Available	555	Open in IMG/M
3300016387\|Ga0182040_10494621	Not Available	976	Open in IMG/M
3300016404\|Ga0182037_10280647	Not Available	1331	Open in IMG/M
3300016445\|Ga0182038_10920615	Not Available	771	Open in IMG/M
3300016445\|Ga0182038_11474967	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300018433\|Ga0066667_11249220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	648	Open in IMG/M
3300018482\|Ga0066669_11480954	Not Available	616	Open in IMG/M
3300021377\|Ga0213874_10077988	Not Available	1069	Open in IMG/M
3300021403\|Ga0210397_10652802	Not Available	806	Open in IMG/M
3300021559\|Ga0210409_10412839	Not Available	1207	Open in IMG/M
3300021560\|Ga0126371_10418372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1484	Open in IMG/M
3300021560\|Ga0126371_13856788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 44	505	Open in IMG/M
3300022523\|Ga0242663_1082762	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300022709\|Ga0222756_1058463	Not Available	592	Open in IMG/M
3300025919\|Ga0207657_11477970	Not Available	508	Open in IMG/M
3300025923\|Ga0207681_11664112	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300025939\|Ga0207665_10142084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1713	Open in IMG/M
3300027105\|Ga0207944_1016507	Not Available	644	Open in IMG/M
3300027775\|Ga0209177_10276734	Not Available	630	Open in IMG/M
3300030945\|Ga0075373_11545459	Not Available	842	Open in IMG/M
3300031564\|Ga0318573_10661474	Not Available	562	Open in IMG/M
3300031573\|Ga0310915_10281512	All Organisms → cellular organisms → Bacteria	1173	Open in IMG/M
3300031680\|Ga0318574_10546742	Not Available	679	Open in IMG/M
3300031724\|Ga0318500_10113568	Not Available	1244	Open in IMG/M
3300031747\|Ga0318502_10090068	Not Available	1685	Open in IMG/M
3300031748\|Ga0318492_10663201	Not Available	558	Open in IMG/M
3300031751\|Ga0318494_10578388	Not Available	656	Open in IMG/M
3300031763\|Ga0318537_10242314	Not Available	669	Open in IMG/M
3300031768\|Ga0318509_10509721	Not Available	672	Open in IMG/M
3300031771\|Ga0318546_10448051	Not Available	904	Open in IMG/M
3300031771\|Ga0318546_11107454	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300031781\|Ga0318547_11059263	Not Available	507	Open in IMG/M
3300031805\|Ga0318497_10438578	Not Available	731	Open in IMG/M
3300031819\|Ga0318568_10284679	Not Available	1026	Open in IMG/M
3300031879\|Ga0306919_11442471	Not Available	519	Open in IMG/M
3300031897\|Ga0318520_10128224	Not Available	1451	Open in IMG/M
3300031910\|Ga0306923_10060506	Not Available	4204	Open in IMG/M
3300031941\|Ga0310912_10038739	All Organisms → cellular organisms → Bacteria → Proteobacteria	3291	Open in IMG/M
3300031945\|Ga0310913_10191170	Not Available	1427	Open in IMG/M
3300031946\|Ga0310910_10042725	All Organisms → cellular organisms → Bacteria	3157	Open in IMG/M
3300031946\|Ga0310910_10304562	Not Available	1254	Open in IMG/M
3300031954\|Ga0306926_10233275	Not Available	2282	Open in IMG/M
3300031954\|Ga0306926_12829156	Not Available	523	Open in IMG/M
3300031954\|Ga0306926_12944512	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300031981\|Ga0318531_10245441	Not Available	808	Open in IMG/M
3300031981\|Ga0318531_10268314	Not Available	771	Open in IMG/M
3300032001\|Ga0306922_10155208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2449	Open in IMG/M
3300032060\|Ga0318505_10393463	Not Available	655	Open in IMG/M
3300032180\|Ga0307471_101061543	Not Available	976	Open in IMG/M
3300032180\|Ga0307471_101860394	Not Available	752	Open in IMG/M
3300032205\|Ga0307472_101273730	Not Available	706	Open in IMG/M
3300032261\|Ga0306920_100310928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2346	Open in IMG/M
3300033290\|Ga0318519_10965684	Not Available	528	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.35%
Host-Associated	Host-Associated	8.65%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.35%
Plants	Host-Associated → Plants	7.69%
Fungi	Host-Associated → Fungi	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.96%
Roots	Host-Associated → Plants → Roots	0.96%
Mycelium	Host-Associated → Fungi → Mycelium	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.65%
Loam	Environmental → Terrestrial → Soil → Loam	7.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.96%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	46.15%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.08%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	16.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.96%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.96%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012169	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC074 MetaG	Host-Associated	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022523	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022709	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027105	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF018 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300030945	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066869_100809502	3300005165	Soil	LLISPDYTKAIARIVSAVASYPEAREAVIAALRDLDAASASVPALADHRSEGAPIDG*
Ga0066680_104930322	3300005174	Soil	ILVNPDYTRVIARIVSAVAYPEAREAVIAALRDLDAASDSTPVLMDRRSGGAVVDG*
Ga0066684_108491682	3300005179	Soil	NVQNNILVNPDYTRVIARIVSAVAPYPEAREAVIAALRDLDAASDSTPVLMDRRSGGAVIDG*
Ga0066671_109115891	3300005184	Soil	VLVNPDYTRAIARIVSAVAPYPEAREAVIAALRDLDSASVAAPALSDGRKERAVENG*
Ga0066675_106495021	3300005187	Soil	VQNNILVNPDYTRAIARIVSAVAPYPEAREAVIAALRELDAASGSAPALTDRRGGEAVDDG*
Ga0066675_112789611	3300005187	Soil	LQRGPLLNIQNNVLVNPDYTRAIARIVGAVAPYPEAREAVIAALRDLDAESASGTALPDRCDERAENG*
Ga0066388_1073191682	3300005332	Tropical Forest Soil	VNPDYTRAIARLVAAVAPYPEARDAVIAALRDLDAASAAPLALSDRHNEGAVVDG*
Ga0070669_1010532572	3300005353	Switchgrass Rhizosphere	GRIQRGPLLHIQNHILVNPDYTRAIARIVSAVAPYPEAREAVIAALRDLDGESASGPALTDRSDERDENG*
Ga0070703_103993571	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	ANGKQPYTPTRNQWLQRGPLLNIQNNIQVNPDYTRAIARIVSAVAPYPEAREAVIAALRDLDAESASGLALTDRSDEPAENG*
Ga0066708_108692092	3300005576	Soil	RLHENFRDCGRLTGELQRGPLLSVQNNILVNPDYTRAIARIVSAVAPYPEAREAVIAALRELDAASGSAPALTDRRGGEAVDDG*
Ga0066903_1039863792	3300005764	Tropical Forest Soil	VNPDYTRAIARLVSAVAPYPEAREAVIAALRDLDAESSSPPALADRRDERTANG*
Ga0066903_1056573392	3300005764	Tropical Forest Soil	LNIQNNVLVNPDYTKAIARIVSAVAPYPQAREAVIAALRDLDAASDPVAALEDRRPKEP*
Ga0066903_1056665922	3300005764	Tropical Forest Soil	LTGELQHGPLLNVQNNVLVNPDYTNAIARIVSAVAPYPEAREAVMAALRDLEPLSDPPPALVGHRVKGGGIDG*
Ga0070766_102903481	3300005921	Soil	PDYTRAIARIVSAVAPYLEAREAVIAALRDLDAASASAPALTDRRDEGTVVDG*
Ga0066659_110735511	3300006797	Soil	PDYTKAIARIVCAVAPYPEAREAVIAALRNLDAVSAPAPALADQRSEGAPIDD*
Ga0079221_104027983	3300006804	Agricultural Soil	VNPDYTRAIARIVSAVAPYPEARDAVIAALRDLDAASAAPAALSDRHSEGAVVDG*
Ga0075428_1023971811	3300006844	Populus Rhizosphere	TRAIARIVSAVAPYPEAREAVIAALRDLDAESASGPALTDRSDEPAENG*
Ga0079219_107093861	3300006954	Agricultural Soil	IQNNVLINPDCTRAIARIVSAVAPYPEAREAVVAVLRDLDAASTSAPALTDRRDEGALIS
Ga0079219_107689972	3300006954	Agricultural Soil	VNPDYTRAIARIVSAVAPYPEAREAVIAALRDLDAESASRTALPDRRDERAENG*
Ga0079219_113610502	3300006954	Agricultural Soil	MSGQSVNPDYARAIARIVSAVAPYPEARETVIAALRDLDSASAGVPGLPDRREKGAAENAVA*
Ga0066710_1038969081	3300009012	Grasslands Soil	IQDNILVNPDYTGAIARIVSAVAPYPEAREAVIAALRDLDGASAAAPALRDRRGGGAADD
Ga0099830_102915631	3300009088	Vadose Zone Soil	ELQRGPLLNIQNNVLVNPDYLKAIARIVSAVAPYPEAREAIIAALRELDAADASTPALADLRSEGAPSDG*
Ga0075423_102736731	3300009162	Populus Rhizosphere	RGPLLNIQNNILVNPDCTRAIARIVSAVAPYPEAREAVIAELRDLDAESASGLALTDRSDEPAENG*
Ga0105242_102315092	3300009176	Miscanthus Rhizosphere	PDYTRAIARIVSAVAPYPQAREAVIAALRDLDAGSASGSALPDRRDERAEDV*
Ga0126384_105930312	3300010046	Tropical Forest Soil	AIARIVSAVAPYPEARDAVIAALRDLDSASVAGLPDLREKGAAENG*
Ga0126376_112015341	3300010359	Tropical Forest Soil	LTGELQRGPLLNIQNNVLINPDSTRAIARIVSAVAPYSEARDAVIAALRDLDSASAGTPALPDL
Ga0126376_113451651	3300010359	Tropical Forest Soil	NVLVNPDYTRAIARIVSAVAPYPEARDAVIAALRDLDAASAAPPALSDRHNEGAVVDG*
Ga0126378_111539561	3300010361	Tropical Forest Soil	QNNVLVNPDYTKAIARIVSAVAPYPEAREAVIAALRDLDDASVSPPALADRNSRTSIDG*
Ga0126378_119302191	3300010361	Tropical Forest Soil	IQNNVLVNPDYTRAIARIVAAVTPYPEAREAVIAALRDLDAASAPALVDRSAGAVVDG*
Ga0126378_123916711	3300010361	Tropical Forest Soil	HENLRDSGRLTGELQRGPLLNIQNNVLVNPDYSKAIARIVSAVALYPEARQAVLAALRDLDATSGGSQFLEDHRSEGALIDG*
Ga0126379_132693851	3300010366	Tropical Forest Soil	NVLINPDSTRAIARIVSAVAPYSEARDGVIAALRDLDSASAGAPALPDLRQEGATGDV*
Ga0126381_1002467641	3300010376	Tropical Forest Soil	CARLTGELQRGPLLNIQNNVLVNPDYTKAIARIVSAVAPFPEARQAVIVALRDLEAASDPAPELVDHRVKGVVIDD*
Ga0126381_1006187351	3300010376	Tropical Forest Soil	PLLNIQNNILVNADYTKAIDRIVSAVAPYPEAREAVIAALRDLDAAAAPASVLEDRRGKGAVVDA*
Ga0126381_1011434603	3300010376	Tropical Forest Soil	FRDCGRLTGELQRGPLLNVQNNILVNADYTKAIARLVSAVAPYPEAREAVILALCDLEAASSAAPVLEDCRGAGASADG*
Ga0126381_1039003592	3300010376	Tropical Forest Soil	GMSAASEVGDNNALALLSGRLHENFRDCGRLTGELQRGPLLNIQNNVQVNPDYTQAIARIVSAVAPYSEARDAVIAALRDLEAVCTPALAIEDHQCNGALIDG*
Ga0134126_116030351	3300010396	Terrestrial Soil	NPDYTRAIARIVSAVAPYPEAREAVIAALRDLDAESASGLALTDRSDEPAENG*
Ga0126383_105264432	3300010398	Tropical Forest Soil	DYTKAIDRIVSAVAPFPEAREAVIAALRDLDATAAPASVLEDRRGKGAVVDG*
Ga0126383_110527222	3300010398	Tropical Forest Soil	LTGELQRGPLLNIQNNVLVNPDYTGAIARIVSAVAPYPEARDAVIAALRDLDAASASTPALVDRSEGALVDG*
Ga0153990_10471231	3300012169	Attine Ant Fungus Gardens	GRLTGELQRGPLLNIQNNVLVNPDYMKAIARIVSAVAPYPQAREAVIAALRDLEAESAPPAVLEHRRSEGAVVDG*
Ga0137394_111556381	3300012922	Vadose Zone Soil	NNVLVNPDYSKAIARIVSAVAPYPEAREAVIAALRELDAANASTPALADLRSEGAPSDG*
Ga0137419_115730072	3300012925	Vadose Zone Soil	QNNVLVNPDYSKAIARIVSAVAPYPEAREAVIAALRELDAANASTPALADLRSEGAPSDG
Ga0164301_118408562	3300012960	Soil	CGRLTGELQHGPLLNIQNNVLLNPDYTRAIAQIVSAVAGYPEARDAIIAALRDLDATSAPTLVLEDRRGKGAVVDG*
Ga0126369_126477481	3300012971	Tropical Forest Soil	IQNNVLVNPDYTRAIARIVSAVAPYSEARDAVVAALRDLDAASGAPPALSDRHNEGAVVDG*
Ga0126369_127534732	3300012971	Tropical Forest Soil	LVNPDYTRAIARLVSAVAPYPEAREAVIAALRDLDAESSSPPALADRRDERTANG*
Ga0164307_113375112	3300012987	Soil	HGPLLNIQNNVLLNPDYTRAIAQIVSAVAGYPEARDAIIAALRDLDATSAPTPVLEDRRGKGAVVDG*
Ga0132257_1041770042	3300015373	Arabidopsis Rhizosphere	VLDAVFIRRKGLNPDNTRVIARIVSAVAPYPDARAAVIAALRDLDMASASTPALTDRRNEGAVIDG*
Ga0182041_106669672	3300016294	Soil	GPLLNIQNNVLVNPDYTKAIARIVSAVAPFPEAREAVITALRDLEAASDPTPALEDHRVKGVVIDD
Ga0182033_101703053	3300016319	Soil	LNIQNNVLVNPDYSRAIARIVSAVAPYPEARQAVIAALRDLDATSGGSQLLEDHRHEGALIDG
Ga0182033_108337721	3300016319	Soil	NPDYTKAIARIVSAVAPFPEAREAVITALRDLEAASDPAPALVDHRVKGVVIDD
Ga0182035_101955573	3300016341	Soil	PDYTKAIARIVSAVAPFPEAREAVITALRDLEAASDPAPALVDHRVKGVVIDD
Ga0182035_103831021	3300016341	Soil	NFRDCGRLTGELQRGPLLNVQNNVLINPDYTKAIARIVSAVAPYSEARDAVVAALRDLDAASDPMPVLEDHRSKEL
Ga0182035_117939852	3300016341	Soil	PDYTKAIARIVSAVAPFPEAREAVITALRDLEAANDPAPALVDHRVKGVVIDD
Ga0182040_104946211	3300016387	Soil	YTKAIARIVGAVAPYPEARQAVIAALRDLEAASDPAVALEDHRVRGAAIDG
Ga0182037_102806473	3300016404	Soil	VNPDYARAIARLVSAVAPYPEAREAVIAALRDLDAESSSPPGLADHRDERTANR
Ga0182038_109206152	3300016445	Soil	VNPDYTKAIARIVSAVAPFPEAREAVITALRDLEEADDPAPALVDHRVKGVVIDG
Ga0182038_114749671	3300016445	Soil	NNVLVNPDYSRAIARIVSAVAPYPEARQAVIAALRDLDATSGGSQFLEDHRSKGALIDG
Ga0066667_112492202	3300018433	Grasslands Soil	VLVNPDYSKAIARIVSAVAPYPEAREAVIAALRDLDAASAPPPALAHQRSEGATIDG
Ga0066669_114809542	3300018482	Grasslands Soil	PDYTRAIARIVGAVAPYPEAREAVIAALRDLDAGSASGPALADHRDEGAENG
Ga0213874_100779882	3300021377	Plant Roots	GPLLNVQNNVLVNPDYTQALARIVSAVAPYPEARNAVIAALRDLDLASTPPPTLETRQRNGAVIDG
Ga0210397_106528021	3300021403	Soil	IQNNLLISPDYTKAIARIVSAVAPYPEAREAVIAALRDLDAASASVPALADHRSEGAPID
Ga0210409_104128391	3300021559	Soil	QNNVLVNPDYSKAIARVVSAVAPYPEAREAIIAALRELDAADASTPALADLRSEGAPSDG
Ga0126371_104183723	3300021560	Tropical Forest Soil	QRGPLLNIQNNVLVNPDYTKAIARIVSAVAPYPQAREAVIAAFRDLDAASDPVAALEDRRPKEP
Ga0126371_138567881	3300021560	Tropical Forest Soil	GELNIQNNVLVNPDYTRTIARLVSAVAAYPEAREAVPAALRDLDAESSSPPALTDRRDERTAND
Ga0242663_10827621	3300022523	Soil	GELQRGPLLNIQNNVLVNPDYTRAIARIVSAVARYPEAREAVIAALRDLDAESASGPALSDRRDERAENG
Ga0222756_10584631	3300022709	Soil	RDCGRLTGELQRGPLLNIQNNVLVNPDYTRAIARIVSAVARYPEAREAVIAALRDLDAESVSGPALSDRRDERAENG
Ga0207657_114779702	3300025919	Corn Rhizosphere	LLNIQNNILVNPDCTRAIARIVSAVAPYPEAREAVIAALRDLDAESASGLALTDRSDEPAENG
Ga0207681_116641121	3300025923	Switchgrass Rhizosphere	NPDYTRAIARIVSAVAPYPEAREAVIAALRDLDGESASGPALTDRSDERDENG
Ga0207665_101420842	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	LLNIQNNVLVNPDYSRAIARIVSAVAPYPEAREAVIAALRDLDGASASVPALTDHRNDGASSDG
Ga0207944_10165071	3300027105	Forest Soil	ELQRGPLLNIQNNVLVNPDYSKAIARVVSAVAPYPEAREAIIAALRELDAADASTPALADLRSEGAPSDG
Ga0209177_102767342	3300027775	Agricultural Soil	MSGQSVNPDYARAIARIVSAVAPYPEARETVIAALRDLDSASAGVPGLPDRREKGAAENAVA
Ga0075373_115454591	3300030945	Soil	PDYTRTIARIVSAVAPYPEAREAVIAALRDLDAESASGPALSDRRDERAENG
Ga0318573_106614741	3300031564	Soil	LAGRLHENFRDCGRLTGELQHGPLLNVQNNVLLNPDYTKAIARIVSAVAPFPEAREAVITALRDLEEADDPAPALVDHRVKGVVIDG
Ga0310915_102815122	3300031573	Soil	LNIQNNVLVNPDYSRAIARIVSAVAPYPEARQAVIAALRDLDATSGGSQFLEDHRSKGALIDG
Ga0318574_105467422	3300031680	Soil	LLNVQNNVLINPDYTKAITRIVSAVTPHPDARDAVIAALRDLDAASTPAPALEDHRPKEL
Ga0318500_101135681	3300031724	Soil	LNPDYTQAIARIVSAVAPYPQAREAVVAALRDLDATSAQAQVLEDRRCQGVVVDG
Ga0318502_100900682	3300031747	Soil	VQNNVLVNPDYTKAIARIVSAVAPFPEAREAVITALRDLEAASDPAPALVDHRVKGVVID
Ga0318492_106632012	3300031748	Soil	LNVQNNVLINPDYTRAIARIVSAVAPFPEARDAVIGALRDIDAASDSVPVLEDRRPKES
Ga0318494_105783882	3300031751	Soil	IQNNVLVNPDYTKAIARIVSAVAPFPEAREAVITALRDLEAASDPTPALEDHRVKGVVID
Ga0318537_102423142	3300031763	Soil	DYTKAIARIVSAVAPFPEAREAVITALRDLEAASDPAPALVDHRVKGVVIDD
Ga0318509_105097211	3300031768	Soil	DYSKAIARIVSAVAPYPEARQAVIAALRDLDATSGGSQLLEDHRHEGALIDG
Ga0318546_104480511	3300031771	Soil	ELQRGPLLNVQNNVLINPDYTKAIARIVSAVAPFPEAREAVITALRDLEAASDPAPALVDHRVKGVVIDD
Ga0318546_111074541	3300031771	Soil	NNVLLSPDYSKAIARIVSAVAPYPQAREAVIAALRDLDGASASVPALADQTSVGAIDG
Ga0318547_110592632	3300031781	Soil	DYTKAIARIVSAVAPFPEAREAVITALRDLEAASDSVPALVDHRVKGVVIDD
Ga0318497_104385782	3300031805	Soil	VQNNVLLNPDYTKAIARIVSAVAPFPEAREAVITALRDLEAASDPAPALVDHRVKGVVID
Ga0318568_102846792	3300031819	Soil	LTGELQHGPLLNVQNNVLVNPDYTKAIARIVSAVAPFPEAREAVITALRDLEAASDPAPALVDHRVKGVVIDD
Ga0306919_114424711	3300031879	Soil	LLNVQNNILINPDYTKAIARIVGAVAPYPEARQAVIAALRDLEAASDPAVALEDHRVRGAAIDG
Ga0318520_101282241	3300031897	Soil	QNNVLINPDYTKAIARIVSAVAPFPEAREAVITALRDLEAASDPAPALVDHRVKGVVIDD
Ga0306923_100605065	3300031910	Soil	LNVQNNILINPDYTKAIARIVGAVAPYPEARQAVIAALRDLEAASDPAVALEDHRVRGAAIDG
Ga0310912_100387391	3300031941	Soil	YTKAIARIVSAVAPFPEAREAVITALRDLEEADDPAPALVDHRVKGVVIDG
Ga0310913_101911701	3300031945	Soil	KAIARIVSAVAPFPEAREAVITALRDLEEADDPAPALVDHRVKGVVIDG
Ga0310910_100427251	3300031946	Soil	QRGPLLNVQNNVLINPDYTKAIARIVSAVAPYSEARDAVVAALRDLDAASDPMPVLEDHRSKEL
Ga0310910_103045622	3300031946	Soil	YTKAIARIVSAVAPFPEAREAVITALRDLEAASDPAPALVDHRVKGVVIDD
Ga0306926_102332752	3300031954	Soil	VQNNILINPDYTKAIARIVGAVAPYPEARQAVIAALRDLEAASDPAVALEDHRVRGAAID
Ga0306926_128291562	3300031954	Soil	GPLLNVQNNVLINPDYSRAITRIVSAVARFPEAREAVIATLRDLEATSGGSQFLEDHHSDGALIDG
Ga0306926_129445122	3300031954	Soil	GELQRGPLLNIQNNVLVNPDYSQAIARIVSAVAPYPEARDAVIEALRDLDAASTPAPVLENHQRREL
Ga0318531_102454411	3300031981	Soil	LHENFRDCGRLTGELQREPLLNIQNNVLVNPDYTKAIARIVSAVAPFPEAREAVITALRDLEEADDPAPALVDHRVK
Ga0318531_102683142	3300031981	Soil	NVLVNPDYTKAIARIVSAVAPFPEAREAVITALRDLEAASDPAPALVDHRVKGVVIDD
Ga0306922_101552084	3300032001	Soil	QRGPLLNVQNNVLINPDYTKAITRIVSAVTPHPDARDAVIAALRDLDAASTPAPALEDHRPKEL
Ga0318505_103934631	3300032060	Soil	ILINPDYTKAIARIVGAVAPYPEARQAVIAALRDLEAASDPAVALEDHRVRGAAIDG
Ga0307471_1010615432	3300032180	Hardwood Forest Soil	VNPDYSRAIARIVSAVAPYPEAREAVIAALRDLDGASASVPALTDHRNDGASSDG
Ga0307471_1018603941	3300032180	Hardwood Forest Soil	IQNNVLVNPDYSKAIARIVSAVGPYPEAREAVIAALRDLDGAIALAPTVIDYHSEGAPID
Ga0307472_1012737301	3300032205	Hardwood Forest Soil	VQNNVLVSPDYARAIAVIVSAVAPYPEAREAVIAALRDLDAASTSAPALADQSRGEAIDG
Ga0306920_1003109281	3300032261	Soil	LNVQNNILINPDYTKAIARIVGAVAPYPEARQAVIAPLRDLEAASDPAVALEDHRVRGAAIDG
Ga0318519_109656841	3300033290	Soil	RDCGRLTGEVQRSPLLNVQNNVLINPDYTKAIARIVSAVAPYSEARDAVVAALRDLDAASDPMPVLEDHRSKEL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096958

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences