Metagenome / Metatranscriptome Family F097050

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097050
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	41 residues
Representative Sequence	MSRVIAVTACGFMLAACSATMPSLSLDFMKSAPQAETLAIE
Number of Associated Samples	78
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.12 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	92.31 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.500 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (31.731 % of family members)
Environment Ontology (ENVO)	Unclassified (60.577 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.808 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 49.28% β-sheet: 0.00% Coil/Unstructured: 50.72%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF13419	HAD_2	16.35
PF13242	Hydrolase_like	8.65
PF12146	Hydrolase_4	2.88
PF00196	GerE	1.92
PF04392	ABC_sub_bind	1.92
PF01274	Malate_synthase	1.92
PF01593	Amino_oxidase	0.96
PF00756	Esterase	0.96
PF07007	LprI	0.96
PF01520	Amidase_3	0.96
PF08281	Sigma70_r4_2	0.96
PF04343	DUF488	0.96
PF01464	SLT	0.96
PF00144	Beta-lactamase	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2225	Malate synthase	Energy production and conversion [C]	1.92
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.92
COG0860	N-acetylmuramoyl-L-alanine amidase	Cell wall/membrane/envelope biogenesis [M]	0.96
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.96
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.96
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.96
COG3189	Uncharacterized conserved protein YeaO, DUF488 family	Function unknown [S]	0.96
COG3755	Uncharacterized conserved protein YecT, DUF1311 family	Function unknown [S]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.50 %
Unclassified	root	N/A	12.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.50 %
Unclassified	root	N/A	12.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.50 %
Unclassified	root	N/A	12.50 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	79.81 %
Unclassified	root	N/A	12.50 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	57.69 %
Unclassified	root	N/A	12.50 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	18.27 %
Unclassified	root	N/A	12.50 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.27 %
Unclassified	root	N/A	12.50 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.96 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.27 %
Unclassified	root	N/A	12.50 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.96 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.27 %
Unclassified	root	N/A	12.50 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.96 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.27 %
Unclassified	root	N/A	12.50 %
Mesorhizobium sp. 131-2-1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. 131-2-1	0.96 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000655\|AF_2010_repII_A100DRAFT_1102177	Not Available	502	Open in IMG/M
3300005363\|Ga0008090_15720273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	848	Open in IMG/M
3300005518\|Ga0070699_100379912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1275	Open in IMG/M
3300005536\|Ga0070697_100066945	Not Available	2937	Open in IMG/M
3300005713\|Ga0066905_101918086	All Organisms → cellular organisms → Bacteria → Proteobacteria	548	Open in IMG/M
3300005764\|Ga0066903_101785600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1174	Open in IMG/M
3300005764\|Ga0066903_106795408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	594	Open in IMG/M
3300005764\|Ga0066903_106966121	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300006791\|Ga0066653_10274654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	856	Open in IMG/M
3300009162\|Ga0075423_12951262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	521	Open in IMG/M
3300010043\|Ga0126380_11036875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	694	Open in IMG/M
3300010046\|Ga0126384_11931271	Not Available	563	Open in IMG/M
3300010048\|Ga0126373_12558417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	569	Open in IMG/M
3300010358\|Ga0126370_10313632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1250	Open in IMG/M
3300010358\|Ga0126370_10919092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	792	Open in IMG/M
3300010360\|Ga0126372_10353822	All Organisms → cellular organisms → Bacteria → Proteobacteria	1319	Open in IMG/M
3300010366\|Ga0126379_12712718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	592	Open in IMG/M
3300010398\|Ga0126383_10947186	All Organisms → cellular organisms → Bacteria → Proteobacteria	948	Open in IMG/M
3300012210\|Ga0137378_10584431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1026	Open in IMG/M
3300012938\|Ga0162651_100054607	All Organisms → cellular organisms → Bacteria → Proteobacteria	635	Open in IMG/M
3300012948\|Ga0126375_11347143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	602	Open in IMG/M
3300012958\|Ga0164299_10334312	All Organisms → cellular organisms → Bacteria → Proteobacteria	946	Open in IMG/M
3300012977\|Ga0134087_10776076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	516	Open in IMG/M
3300014166\|Ga0134079_10429827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	621	Open in IMG/M
3300015372\|Ga0132256_103095100	Not Available	559	Open in IMG/M
3300015374\|Ga0132255_103819839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. 131-2-1	640	Open in IMG/M
3300016270\|Ga0182036_11217729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	626	Open in IMG/M
3300016319\|Ga0182033_10093217	All Organisms → cellular organisms → Bacteria	2195	Open in IMG/M
3300016319\|Ga0182033_10303437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1318	Open in IMG/M
3300016319\|Ga0182033_11606821	Not Available	588	Open in IMG/M
3300016319\|Ga0182033_12005240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	527	Open in IMG/M
3300016357\|Ga0182032_11099051	All Organisms → cellular organisms → Bacteria → Proteobacteria	682	Open in IMG/M
3300016357\|Ga0182032_11170930	All Organisms → cellular organisms → Bacteria → Proteobacteria	661	Open in IMG/M
3300016371\|Ga0182034_10176740	All Organisms → cellular organisms → Bacteria	1630	Open in IMG/M
3300016371\|Ga0182034_10789418	Not Available	812	Open in IMG/M
3300016387\|Ga0182040_10310531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1209	Open in IMG/M
3300016387\|Ga0182040_11245813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	627	Open in IMG/M
3300016404\|Ga0182037_10460621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1059	Open in IMG/M
3300016422\|Ga0182039_10860128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	808	Open in IMG/M
3300016422\|Ga0182039_10880992	All Organisms → cellular organisms → Bacteria → Proteobacteria	798	Open in IMG/M
3300016445\|Ga0182038_10107902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2040	Open in IMG/M
3300018482\|Ga0066669_11330029	All Organisms → cellular organisms → Bacteria → Proteobacteria	651	Open in IMG/M
3300021372\|Ga0213877_10192584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	660	Open in IMG/M
3300021439\|Ga0213879_10007700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2228	Open in IMG/M
3300021476\|Ga0187846_10449567	Not Available	528	Open in IMG/M
3300021478\|Ga0210402_10043259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3921	Open in IMG/M
3300025906\|Ga0207699_10230807	Not Available	1267	Open in IMG/M
3300025910\|Ga0207684_11724741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	504	Open in IMG/M
3300026326\|Ga0209801_1180754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	866	Open in IMG/M
3300026557\|Ga0179587_10520635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	781	Open in IMG/M
3300027654\|Ga0209799_1054137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	898	Open in IMG/M
3300028536\|Ga0137415_11121693	All Organisms → cellular organisms → Bacteria → Proteobacteria	600	Open in IMG/M
3300028710\|Ga0307322_10170097	All Organisms → cellular organisms → Bacteria → Proteobacteria	586	Open in IMG/M
3300028721\|Ga0307315_10082521	All Organisms → cellular organisms → Bacteria → Proteobacteria	929	Open in IMG/M
3300028810\|Ga0307294_10066372	All Organisms → cellular organisms → Bacteria → Proteobacteria	1081	Open in IMG/M
3300031170\|Ga0307498_10037581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1237	Open in IMG/M
3300031545\|Ga0318541_10241900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1002	Open in IMG/M
3300031545\|Ga0318541_10613303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	608	Open in IMG/M
3300031561\|Ga0318528_10105358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1482	Open in IMG/M
3300031573\|Ga0310915_11189457	All Organisms → cellular organisms → Bacteria → Proteobacteria	527	Open in IMG/M
3300031679\|Ga0318561_10189838	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300031680\|Ga0318574_10027628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2837	Open in IMG/M
3300031682\|Ga0318560_10656372	All Organisms → cellular organisms → Bacteria → Proteobacteria	567	Open in IMG/M
3300031713\|Ga0318496_10437537	All Organisms → cellular organisms → Bacteria → Proteobacteria	723	Open in IMG/M
3300031719\|Ga0306917_10339757	All Organisms → cellular organisms → Bacteria → Proteobacteria	1165	Open in IMG/M
3300031719\|Ga0306917_10471338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	984	Open in IMG/M
3300031719\|Ga0306917_10860027	All Organisms → cellular organisms → Bacteria → Proteobacteria	710	Open in IMG/M
3300031719\|Ga0306917_11147210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	604	Open in IMG/M
3300031719\|Ga0306917_11301113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M
3300031770\|Ga0318521_10655817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	636	Open in IMG/M
3300031771\|Ga0318546_10536822	Not Available	821	Open in IMG/M
3300031771\|Ga0318546_10715750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	704	Open in IMG/M
3300031771\|Ga0318546_10813782	All Organisms → cellular organisms → Bacteria → Proteobacteria	657	Open in IMG/M
3300031781\|Ga0318547_10360054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	889	Open in IMG/M
3300031794\|Ga0318503_10213194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	626	Open in IMG/M
3300031796\|Ga0318576_10146554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1099	Open in IMG/M
3300031846\|Ga0318512_10112764	All Organisms → cellular organisms → Bacteria → Proteobacteria	1287	Open in IMG/M
3300031879\|Ga0306919_10106447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1983	Open in IMG/M
3300031879\|Ga0306919_10954124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	656	Open in IMG/M
3300031879\|Ga0306919_11069997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	615	Open in IMG/M
3300031890\|Ga0306925_10079576	All Organisms → cellular organisms → Bacteria → Proteobacteria	3462	Open in IMG/M
3300031890\|Ga0306925_12116696	All Organisms → cellular organisms → Bacteria → Proteobacteria	526	Open in IMG/M
3300031893\|Ga0318536_10619449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	541	Open in IMG/M
3300031896\|Ga0318551_10776914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300031897\|Ga0318520_11016537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	524	Open in IMG/M
3300031910\|Ga0306923_10470212	Not Available	1424	Open in IMG/M
3300031910\|Ga0306923_10940746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	943	Open in IMG/M
3300031941\|Ga0310912_10166263	All Organisms → cellular organisms → Bacteria	1673	Open in IMG/M
3300031941\|Ga0310912_11476214	Not Available	512	Open in IMG/M
3300031945\|Ga0310913_10937361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	608	Open in IMG/M
3300031945\|Ga0310913_11085635	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300032001\|Ga0306922_10400939	All Organisms → cellular organisms → Bacteria	1469	Open in IMG/M
3300032001\|Ga0306922_11783828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	606	Open in IMG/M
3300032001\|Ga0306922_12194970	Not Available	532	Open in IMG/M
3300032010\|Ga0318569_10192689	All Organisms → cellular organisms → Bacteria → Proteobacteria	943	Open in IMG/M
3300032039\|Ga0318559_10128304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1141	Open in IMG/M
3300032044\|Ga0318558_10555615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	573	Open in IMG/M
3300032055\|Ga0318575_10254865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	885	Open in IMG/M
3300032059\|Ga0318533_10349596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1076	Open in IMG/M
3300032059\|Ga0318533_11235585	Not Available	546	Open in IMG/M
3300032060\|Ga0318505_10008340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3596	Open in IMG/M
3300032063\|Ga0318504_10368110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	683	Open in IMG/M
3300032064\|Ga0318510_10085418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1179	Open in IMG/M
3300032261\|Ga0306920_103685889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.12%
Host-Associated	Host-Associated	2.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.12%
Plants	Host-Associated → Plants	2.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.19%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.92%
Cave	Environmental → Terrestrial → Cave	0.96%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.54%
Loam	Environmental → Terrestrial → Soil → Loam	8.65%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	62.50%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.19%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.88%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.96%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.88%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	1.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.96%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.96%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A100DRAFT_11021771	3300000655	Forest Soil	MSRIIVVTACGFMLAACSVTMPSLSLDFMKPAPQDETLA
Ga0008090_157202731	3300005363	Tropical Rainforest Soil	MSRVIAVTVCGIMLAACSATMPSLDFMKSAPQAESLAIES
Ga0070699_1003799121	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MSRVIAVMACGFMLAACSATMPSLDFLKSTPQPETLAIES
Ga0070697_1000669451	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MSRVIAVMACGFMPCGFMLAACSTTMPSLDFMKSAPQAESLAIESEPPGAEAK
Ga0066905_1019180861	3300005713	Tropical Forest Soil	MSRVIAVMACGFMLAACSATMPSLDFLKSAPQPETL
Ga0066903_1017856003	3300005764	Tropical Forest Soil	MSRVIALMAFGFMPCGFMLAACSTTMPSLDFMKSAPQDESLAIES
Ga0066903_1067954081	3300005764	Tropical Forest Soil	MSRGIAVMACGFMLAACSTTMPSLDFMKSAPQAESLAIESEPP
Ga0066903_1069661211	3300005764	Tropical Forest Soil	MSRVIAVMACGFMLAACSTTMPSLDFMKSAPQAESLA
Ga0066653_102746543	3300006791	Soil	MSRVIAVMACGFMPCGFMLAACSTTMPSLDFMKSAPQAESLAIESEPPGAEAKTSLGQ
Ga0075423_129512622	3300009162	Populus Rhizosphere	MSRVIAVMACGLSVAACSASMPSLDFLKSTPHTEALAI
Ga0126380_110368751	3300010043	Tropical Forest Soil	MSRVIAVTACGFMLAACSATMPSLSLDFMKSAPQPETL
Ga0126384_119312711	3300010046	Tropical Forest Soil	MSRLIAAVASGFLLAACSATMPSLNLDFMKSAPQAETLTIESKPPG
Ga0126373_125584171	3300010048	Tropical Forest Soil	MSRVIAITACGFMLAACSATMPSLSLDFMKSAPQAETLAIESEPPG
Ga0126370_103136324	3300010358	Tropical Forest Soil	MSRVIAVTACGFMLAACSATMPSLSLDFMKSAPQAETLAIESE
Ga0126370_109190922	3300010358	Tropical Forest Soil	MSRVIAVTACGFMLAACSATMPSLSLDFMKSAPQA
Ga0126372_103538221	3300010360	Tropical Forest Soil	MSRVIAVTVCGFMLPACSTTMPSLDFMKSAPQAESLAIES
Ga0126379_127127181	3300010366	Tropical Forest Soil	MSRVIAVTACGFMLAACSATMPSLSLDFMKSAPQAETLAIE
Ga0126383_109471861	3300010398	Tropical Forest Soil	MSRIIAITASGFMLAACSVTMPSLSLDFMKSAPQDETLAIDSEPPAAEAKT
Ga0137378_105844312	3300012210	Vadose Zone Soil	MSRVIAVIAGGFMLAACSTTMPSLDFLKSAPQSETLA
Ga0162651_1000546071	3300012938	Soil	MGRVIAVMACGFSVAACSASMPSLDFLKSTPQTEALAIETEPP
Ga0126375_113471431	3300012948	Tropical Forest Soil	LPPSGGIMSRVIAVVVCGLMVAACSATMPSLDFLKSTPQSETLAIDSEPSG
Ga0164299_103343122	3300012958	Soil	MSRVIAVMACGLSVAAGSASMPSLDFLKSNPQTEALAIESEPPG
Ga0134087_107760762	3300012977	Grasslands Soil	MSRVIAVTACGLMLGACSAAMPSLDFLKSAPQSETLAIESEPAGA
Ga0134079_104298272	3300014166	Grasslands Soil	MSRVIAIMACGFMLTACSATMLNLSLDFMKSAPQAERLA
Ga0132256_1030951002	3300015372	Arabidopsis Rhizosphere	MSRVIAIVACGLSVAACSASMPSLDFLKSSPQTEALAIE
Ga0132255_1038198392	3300015374	Arabidopsis Rhizosphere	MSRLIAVVACGFMLAACSTTIPSLNLDFMKSAPHAE
Ga0182036_112177291	3300016270	Soil	MRRVIAVMACGFMLAACSTTMPSLDFMKSAPQAESLAIESE
Ga0182033_100932174	3300016319	Soil	MSRIIAVMASGFMLAACSVTMPSLSLDFMKSAPQDETLAI
Ga0182033_103034374	3300016319	Soil	MSPRWWDPIMSRVIAVPVCGFMLAACSTTMPSLDFMKSAPQGESLAIESESPGAEA
Ga0182033_116068213	3300016319	Soil	MSRVIAVTTCGFVLAACSATMPSLSLDFMKSAPQAETLAIESEP
Ga0182033_120052401	3300016319	Soil	MSRVIAVTACGFMLAACSATMPSLSLDFMKSAPQAET
Ga0182032_110990511	3300016357	Soil	MSRVIAVMACGFMLSACSAAMPSLDFLKSTPQPETLAIESEPAGAEA
Ga0182032_111709301	3300016357	Soil	MSRVIALMACGFMLAACSATMPSLDFLKSTPQPETLAIESEPP
Ga0182034_101767401	3300016371	Soil	MSRVIAVTACGFMLAACSATMPSLSLDFMKSAPQAETLAIESEP
Ga0182034_107894182	3300016371	Soil	MSRVIAVTTCGFVLAACSATMPSLSLDFMKSAPQAETLAIES
Ga0182040_103105314	3300016387	Soil	MSRVIAVTVCGIMLAACSATMPSLDFMKSAPQAESLAIESE
Ga0182040_112458131	3300016387	Soil	MSPRWWDPIMSRVIAVPVCGFMLAACSTTMPSLDFMKSAPQGESLAIESEPP
Ga0182037_104606211	3300016404	Soil	AIMSRVIAVMACGFMLAACSTTMPSLDFMKAAPKG
Ga0182039_108601281	3300016422	Soil	MPPRWCWIMRRVIAVTACGFMLAACSATMPSLSLDFMKSAPQAETLAIESE
Ga0182039_108809922	3300016422	Soil	MSRVIAVMACGFMLSACSAAMPSLDFLKSTPQPETLAIESEPAGAEAK
Ga0182038_101079023	3300016445	Soil	MSRLIAVVAWGFMLAACSATMPNLNLDFMKSAPQAETLA
Ga0066669_113300292	3300018482	Grasslands Soil	MSRVIAVTACGLMLGACSAAMPSLDFLKSAPQSETLAIESEPAGAKAK
Ga0213877_101925841	3300021372	Bulk Soil	MSRVIAVTACGLMLAACSATMPSLSLDFMKSAPQAETLAI
Ga0213879_100077004	3300021439	Bulk Soil	MSRIIAITASGFMLAACSVTMPSLSLDFMKSAPQD
Ga0187846_104495671	3300021476	Biofilm	MSRVIAVMACGFMLAACSTTMPSLDFMKSAPEAESLAI
Ga0210402_100432595	3300021478	Soil	MSRVVAITACGLMLAACSAAMPSLDFLKSAPQSETLAIESDPP
Ga0207699_102308074	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VIAILACGFMLTACSATMPSLSLDFMKSAPQAETLAIESEPPSLAVTIIRLAAE
Ga0207684_117247411	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSRVIAVMACGFMPCGFMLAACSTTMPSLDFMKSAPQAESLAIESEPPGAEA
Ga0209801_11807542	3300026326	Soil	MSRLIAVVAWGFMLAACSATMPNLNLDFMKSAPQAETL
Ga0179587_105206352	3300026557	Vadose Zone Soil	MSRVIAIVACGFMLTACSATMPSLSLDFMKSTPRPK
Ga0209799_10541373	3300027654	Tropical Forest Soil	MSRLIAVVAWGFMLAACSATMPNLNLDFMKSAPQAEMLAIES
Ga0137415_111216932	3300028536	Vadose Zone Soil	MSRVIVLMACGLMLAACSATMPSLDFLKSAPQSETLAIE
Ga0307322_101700972	3300028710	Soil	MSRVIAIVACGLSVAACSASMPSLDFLKSSPQTEAL
Ga0307315_100825211	3300028721	Soil	MSRVIAVMACGFSVAACSASMPSLDFLKSTPQNEALAIETEPPG
Ga0307294_100663721	3300028810	Soil	MSRVIAVMACGFSVAACSASMPSLDFLKSTPQTEA
Ga0307498_100375811	3300031170	Soil	MSRVIAIMACGFSVAACSASMPSLDFLKSTPQTEALAIETE
Ga0318541_102419001	3300031545	Soil	MSRVIAVMACGFMLAACSTTMPSLDFIKSAPEAESLA
Ga0318541_106133031	3300031545	Soil	MSRVIAVTACGFMLAACSATMPSLSLDFMKSAPQPET
Ga0318528_101053583	3300031561	Soil	MPPRWCWIMRRVIAVTACGFMLAACSATMPSLSLDFMKSAPQAETL
Ga0310915_111894571	3300031573	Soil	MSRVIAVMACGFMLTACSATMPSLDFLKSTPQPET
Ga0318561_101898381	3300031679	Soil	MSRVIAVMACGFMLAACSTTMPSLDFMKSAPQAESLAIDSE
Ga0318574_100276286	3300031680	Soil	MPPRWCWIMRRVIAVTACGFMLAACSATMPSLSLDFMKSAPQA
Ga0318560_106563721	3300031682	Soil	MSRVIAVMACGFMLTACSAMMPSLDFLKSTPQPETLAIESEP
Ga0318496_104375371	3300031713	Soil	MSRVIALMACGFMLAACSATMPSLDFLKSTPQPETLAI
Ga0306917_103397571	3300031719	Soil	MSRVIAVTACGFMLAACSATMPSLSLDFMKSAPQPETLTIESE
Ga0306917_104713382	3300031719	Soil	MSRVIAVMACGFMLAACSTTMPSLDFMKSAPQAESLAIESEPAG
Ga0306917_108600271	3300031719	Soil	MSRVIAVMACGFMLTACSATMPSLDFLKSTPQPETLAIESEPPG
Ga0306917_111472101	3300031719	Soil	MSRVVAVTGCGFMLAACSATIPSLSLDFMKSAPQAET
Ga0306917_113011131	3300031719	Soil	MSRVIAVMACGFMLAACSTTMPSLDFIKSAPEAESLAIE
Ga0318521_106558171	3300031770	Soil	MSRVIAVTVCGIMLAACSATMPSLDFMKSAPQAESLAIESEP
Ga0318546_105368221	3300031771	Soil	MSRAIAVTACGFILAACSATMPSLSLDFMKSAPQPETLTIESEPPGA
Ga0318546_107157501	3300031771	Soil	MSRVIAVTACGFMLAACSATMPSLSLDFMTSAPQAETLA
Ga0318546_108137821	3300031771	Soil	MSRVIAVMACGFMLSACSAAMPSLDFLKSTPQPETLAIESEP
Ga0318547_103600542	3300031781	Soil	MSRIIAVTVCGFMLAACSTTMPSLDFMKSAPQGESLAI
Ga0318503_102131943	3300031794	Soil	MSRVVAVTACGFMLAACSATMPSLSLDFMKSAPQAETLAIE
Ga0318576_101465544	3300031796	Soil	MSRVIAVTACGFMLAACSATMPSLSLDFMKSAPQAE
Ga0318512_101127641	3300031846	Soil	MSRVIAVMACGFMLAACSATMPSLDFLKSTPQPETLAIE
Ga0306919_101064471	3300031879	Soil	MSRLIAVVAWGFMLAACSATMPNLNLDFMKSAPQAETLAIES
Ga0306919_109541241	3300031879	Soil	MRRVIAVMACGFMLAACSTTMPSLDFMKSAPQAESLAIESEPAG
Ga0306919_110699972	3300031879	Soil	MSRVIAVTVCGIMLAACSATMPSLDFMKSAPQAESLAIESEPP
Ga0306925_100795763	3300031890	Soil	MSRVIAVTACGFMLAACSATMPSLSLDFMKSAPQAETLAI
Ga0306925_121166961	3300031890	Soil	MSRVIAVMACGFMLTACSATMPSLDFLKSTPQPETLA
Ga0318536_106194491	3300031893	Soil	MSRVIAVMACGFMLAACSTTMPSLDFMKSAPQAESLAIES
Ga0318551_107769142	3300031896	Soil	MSRVIAVTACGFMLTACSATMPSLSLDFMKSAPQAETLAIESEPPG
Ga0318520_110165371	3300031897	Soil	MSRVIAVTVCGFMLAACSTTMPSLDFMKSAPQAESL
Ga0306923_104702122	3300031910	Soil	MSRLIAVVAWGFMLAACSATMPNLNLDFMKSAPQAETLAIESEPPGA
Ga0306923_109407462	3300031910	Soil	MSRVIAVMACGFMLAACSTTMPSLDFMKSAPQAESLAI
Ga0310912_101662631	3300031941	Soil	MSRVIAVTACGFMLAACSATMPSLSLDFMKSAPQAETLAIESEPPG
Ga0310912_114762142	3300031941	Soil	MSRVIAVTTCGFVLAACSATMPSLSLDFMKSAPQAETLAIE
Ga0310913_109373611	3300031945	Soil	MSRIIAVMASGFMLAACSVTMPSLSLDFMKSAPQDETLAIESEPPAAEAK
Ga0310913_110856353	3300031945	Soil	MSRVVAVTACGFMLAACSATMPSLSLDFMKSAPQAETLAI
Ga0306922_104009391	3300032001	Soil	VSRVIAVMACGLMPCGLMLAACSTTMPSLDFMKSAPQAESL
Ga0306922_117838283	3300032001	Soil	MSRAIAVMAFGFMPCGFMLAACSTTMPSLDFMKSAPQAESLAIESEPSGA
Ga0306922_121949701	3300032001	Soil	MSRVIAVTTCGFVLAACSATMPSLSLDFMKSAPQAETLAIESEPP
Ga0318569_101926891	3300032010	Soil	MSRVIAVMACGFMLAACSATMPSLDFLKSTPQPEAL
Ga0318559_101283044	3300032039	Soil	MSRIIAVTVCGFMLAACSTTMPSLDFMKSAPQVESLTIES
Ga0318558_105556151	3300032044	Soil	MPPRWCWIMRRVIAVTACGFMLAACSATMPSLSLDFMKSAPQAE
Ga0318575_102548651	3300032055	Soil	MSRVIAVIACGFTLAACSTTMPSLDFMKSAPQSEMLA
Ga0318533_103495961	3300032059	Soil	MSRVIAVTACGFMLAACSATMPSLSLDFMKSAPQPETLA
Ga0318533_112355851	3300032059	Soil	MSRVIAVTTCGFVLAACSATMPSLSLDFMKSAPQAETLAIESEPPG
Ga0318505_100083405	3300032060	Soil	MRRVIAVMACGFMLAACSTTMPSLDFMKSAPQAES
Ga0318504_103681104	3300032063	Soil	MSRVVAVTGCGFMLAACSATIPSLSLDFMKSVPQAE
Ga0318510_100854184	3300032064	Soil	MSRVIAVTACGFMLAACSATMPSLSLDFMKSAPQPE
Ga0306920_1036858891	3300032261	Soil	MSRVIAVTACGFMLAACSATMPSLSLDFMKSAPQPETLTI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097050

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences