NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F097069

Metagenome Family F097069

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F097069
Family Type Metagenome
Number of Sequences 104
Average Sequence Length 65 residues
Representative Sequence MYTTTDKCRAFSGEIETENMADLVLVDELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQD
Number of Associated Samples 66
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 22.12 %
% of genes from short scaffolds (< 2000 bps) 77.88 %
Associated GOLD sequencing projects 55
AlphaFold2 3D model prediction Yes
3D model pTM-score0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (62.500 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(42.308 % of family members)
Environment Ontology (ENVO) Unclassified
(68.269 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(58.654 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 32.26%    β-sheet: 0.00%    Coil/Unstructured: 67.74%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.25
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF00118Cpn60_TCP1 2.88
PF00176SNF2-rel_dom 0.96
PF00166Cpn10 0.96
PF00856SET 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG0459Chaperonin GroEL (HSP60 family)Posttranslational modification, protein turnover, chaperones [O] 2.88
COG0234Co-chaperonin GroES (HSP10)Posttranslational modification, protein turnover, chaperones [O] 0.96

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A62.50 %
All OrganismsrootAll Organisms37.50 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000117|DelMOWin2010_c10086337All Organisms → Viruses → Predicted Viral1201Open in IMG/M
3300001349|JGI20160J14292_10030648All Organisms → Viruses → Predicted Viral2780Open in IMG/M
3300004448|Ga0065861_1040863All Organisms → Viruses → Predicted Viral3274Open in IMG/M
3300004448|Ga0065861_1091406Not Available655Open in IMG/M
3300004461|Ga0066223_1023328All Organisms → Viruses → Predicted Viral3657Open in IMG/M
3300005613|Ga0074649_1005117Not Available11635Open in IMG/M
3300005748|Ga0076925_1025212All Organisms → Viruses → Predicted Viral1027Open in IMG/M
3300006025|Ga0075474_10017890All Organisms → Viruses → Predicted Viral2607Open in IMG/M
3300006026|Ga0075478_10079968All Organisms → Viruses → Predicted Viral1053Open in IMG/M
3300006026|Ga0075478_10105093Not Available900Open in IMG/M
3300006789|Ga0098054_1144298Not Available881Open in IMG/M
3300006793|Ga0098055_1080556All Organisms → Viruses → Predicted Viral1282Open in IMG/M
3300006802|Ga0070749_10004268Not Available9501Open in IMG/M
3300006810|Ga0070754_10057515Not Available2029Open in IMG/M
3300006810|Ga0070754_10100370All Organisms → Viruses → Predicted Viral1431Open in IMG/M
3300006810|Ga0070754_10145664Not Available1136Open in IMG/M
3300006810|Ga0070754_10308960Not Available708Open in IMG/M
3300006810|Ga0070754_10315375Not Available698Open in IMG/M
3300006810|Ga0070754_10488003Not Available531Open in IMG/M
3300006868|Ga0075481_10042015All Organisms → Viruses → Predicted Viral1765Open in IMG/M
3300006868|Ga0075481_10061757All Organisms → Viruses → Predicted Viral1423Open in IMG/M
3300006870|Ga0075479_10198058Not Available808Open in IMG/M
3300006916|Ga0070750_10135712Not Available1121Open in IMG/M
3300007538|Ga0099851_1023795All Organisms → Viruses → Predicted Viral2473Open in IMG/M
3300007538|Ga0099851_1084583All Organisms → Viruses → Predicted Viral1219Open in IMG/M
3300007538|Ga0099851_1121357Not Available987Open in IMG/M
3300007541|Ga0099848_1041040All Organisms → Viruses → Predicted Viral1893Open in IMG/M
3300007541|Ga0099848_1052040All Organisms → Viruses → Predicted Viral1647Open in IMG/M
3300007541|Ga0099848_1267896Not Available593Open in IMG/M
3300007542|Ga0099846_1108601All Organisms → Viruses → Predicted Viral1018Open in IMG/M
3300007542|Ga0099846_1178926Not Available755Open in IMG/M
3300007640|Ga0070751_1239496Not Available692Open in IMG/M
3300007640|Ga0070751_1295456Not Available605Open in IMG/M
3300007960|Ga0099850_1050127Not Available1783Open in IMG/M
3300007960|Ga0099850_1116941All Organisms → Viruses → Predicted Viral1091Open in IMG/M
3300007960|Ga0099850_1199397Not Available788Open in IMG/M
3300008012|Ga0075480_10012754Not Available5242Open in IMG/M
3300008470|Ga0115371_10085122Not Available999Open in IMG/M
3300009149|Ga0114918_10365127Not Available793Open in IMG/M
3300009149|Ga0114918_10468467Not Available678Open in IMG/M
3300009529|Ga0114919_10114514All Organisms → Viruses → Predicted Viral1954Open in IMG/M
3300010354|Ga0129333_11227637All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → unclassified Flavobacterium → Flavobacterium sp. MedPE-SWcel622Open in IMG/M
3300017708|Ga0181369_1073526Not Available736Open in IMG/M
3300017770|Ga0187217_1288309Not Available530Open in IMG/M
3300017783|Ga0181379_1176138Not Available755Open in IMG/M
3300017963|Ga0180437_10204966Not Available1549Open in IMG/M
3300017963|Ga0180437_10308858All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.1202Open in IMG/M
3300017987|Ga0180431_10063217All Organisms → Viruses → Predicted Viral3245Open in IMG/M
3300017987|Ga0180431_10469561Not Available882Open in IMG/M
3300017989|Ga0180432_10275789Not Available1297Open in IMG/M
3300017989|Ga0180432_10392558All Organisms → Viruses → Predicted Viral1032Open in IMG/M
3300017991|Ga0180434_10156494All Organisms → Viruses → Predicted Viral1853Open in IMG/M
3300017991|Ga0180434_10289698All Organisms → Viruses → Predicted Viral1287Open in IMG/M
3300017991|Ga0180434_10548062Not Available885Open in IMG/M
3300018036|Ga0181600_10054282All Organisms → Viruses → Predicted Viral2557Open in IMG/M
3300018080|Ga0180433_10749060Not Available723Open in IMG/M
3300018080|Ga0180433_10855951Not Available668Open in IMG/M
3300021375|Ga0213869_10002236Not Available13599Open in IMG/M
3300022068|Ga0212021_1109616Not Available566Open in IMG/M
3300022069|Ga0212026_1027242Not Available828Open in IMG/M
3300022168|Ga0212027_1046299Not Available552Open in IMG/M
3300022176|Ga0212031_1008225Not Available1414Open in IMG/M
3300022176|Ga0212031_1048643Not Available711Open in IMG/M
3300022187|Ga0196899_1077305Not Available1025Open in IMG/M
3300022198|Ga0196905_1014577All Organisms → Viruses → Predicted Viral2538Open in IMG/M
3300022198|Ga0196905_1028144Not Available1704Open in IMG/M
3300022198|Ga0196905_1043862All Organisms → Viruses → Predicted Viral1294Open in IMG/M
(restricted) 3300023112|Ga0233411_10209369Not Available644Open in IMG/M
(restricted) 3300023210|Ga0233412_10003257Not Available7596Open in IMG/M
(restricted) 3300023210|Ga0233412_10005264Not Available5641Open in IMG/M
(restricted) 3300023210|Ga0233412_10193905Not Available880Open in IMG/M
(restricted) 3300023210|Ga0233412_10288820Not Available723Open in IMG/M
(restricted) 3300023276|Ga0233410_10086133Not Available965Open in IMG/M
(restricted) 3300024059|Ga0255040_10042681All Organisms → Viruses → Predicted Viral1650Open in IMG/M
(restricted) 3300024062|Ga0255039_10019726All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.2389Open in IMG/M
3300024262|Ga0210003_1035803All Organisms → Viruses → Predicted Viral2707Open in IMG/M
(restricted) 3300024517|Ga0255049_10209556Not Available891Open in IMG/M
(restricted) 3300024518|Ga0255048_10096815All Organisms → Viruses → Predicted Viral1460Open in IMG/M
3300025108|Ga0208793_1173312Not Available556Open in IMG/M
3300025610|Ga0208149_1009272All Organisms → Viruses → Predicted Viral3051Open in IMG/M
3300025646|Ga0208161_1003829All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.7218Open in IMG/M
3300025646|Ga0208161_1101557All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → unclassified Flavobacterium → Flavobacterium sp. MedPE-SWcel792Open in IMG/M
3300025687|Ga0208019_1108266Not Available841Open in IMG/M
3300025759|Ga0208899_1070609Not Available1400Open in IMG/M
3300025759|Ga0208899_1228784Not Available569Open in IMG/M
3300025886|Ga0209632_10013569Not Available6243Open in IMG/M
3300025889|Ga0208644_1030050All Organisms → Viruses → Predicted Viral3267Open in IMG/M
(restricted) 3300027837|Ga0255041_10167650Not Available763Open in IMG/M
(restricted) 3300027861|Ga0233415_10001273Not Available10993Open in IMG/M
(restricted) 3300027861|Ga0233415_10027503All Organisms → Viruses → Predicted Viral2292Open in IMG/M
(restricted) 3300028045|Ga0233414_10468669Not Available591Open in IMG/M
(restricted) 3300028045|Ga0233414_10646710Not Available503Open in IMG/M
3300029308|Ga0135226_1021456Not Available610Open in IMG/M
3300031539|Ga0307380_10637587Not Available910Open in IMG/M
3300031539|Ga0307380_10753663Not Available812Open in IMG/M
3300031565|Ga0307379_10502676All Organisms → Viruses → Predicted Viral1134Open in IMG/M
3300031565|Ga0307379_10991843Not Available717Open in IMG/M
3300031578|Ga0307376_10186165All Organisms → Viruses → Predicted Viral1422Open in IMG/M
3300031578|Ga0307376_10518180Not Available769Open in IMG/M
3300031669|Ga0307375_10690877Not Available589Open in IMG/M
3300031673|Ga0307377_10297788All Organisms → Viruses → Predicted Viral1223Open in IMG/M
3300031673|Ga0307377_11134354Not Available516Open in IMG/M
3300031673|Ga0307377_11139559Not Available514Open in IMG/M
3300032136|Ga0316201_11151627Not Available649Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous42.31%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater11.54%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment10.58%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil9.62%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater4.81%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine3.85%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface3.85%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine2.88%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine1.92%
Worm BurrowEnvironmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow0.96%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.96%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.96%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh0.96%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.96%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.96%
Marine HarborEnvironmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor0.96%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment0.96%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment0.96%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300001349Pelagic Microbial community sample from North Sea - COGITO 998_met_10EnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004461Marine viral communities from Newfoundland, Canada BC-2EnvironmentalOpen in IMG/M
3300005613Saline sediment microbial communities from Etoliko Lagoon, Greece - sedimentEnvironmentalOpen in IMG/M
3300005748Seawater microbial communities from Vineyard Sound, MA, USA - control T7EnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006868Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006870Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007541Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaGEnvironmentalOpen in IMG/M
3300007542Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaGEnvironmentalOpen in IMG/M
3300007640Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28EnvironmentalOpen in IMG/M
3300007960Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaGEnvironmentalOpen in IMG/M
3300008012Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300008470Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563EnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300009529Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaGEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300017708Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaGEnvironmentalOpen in IMG/M
3300017770Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)EnvironmentalOpen in IMG/M
3300017783Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10EnvironmentalOpen in IMG/M
3300017963Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaGEnvironmentalOpen in IMG/M
3300017987Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaGEnvironmentalOpen in IMG/M
3300017989Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_2 metaGEnvironmentalOpen in IMG/M
3300017991Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaGEnvironmentalOpen in IMG/M
3300018036Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018080Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaGEnvironmentalOpen in IMG/M
3300021375Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132EnvironmentalOpen in IMG/M
3300022068Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)EnvironmentalOpen in IMG/M
3300022069Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v2)EnvironmentalOpen in IMG/M
3300022168Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v2)EnvironmentalOpen in IMG/M
3300022176Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022187Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)EnvironmentalOpen in IMG/M
3300022198Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300023112 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_2_MGEnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300023276 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_1_MGEnvironmentalOpen in IMG/M
3300024059 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2EnvironmentalOpen in IMG/M
3300024062 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1EnvironmentalOpen in IMG/M
3300024262Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024517 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_3EnvironmentalOpen in IMG/M
3300024518 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025610Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025646Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025687Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025886Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300027837 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_3EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300028045 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MGEnvironmentalOpen in IMG/M
3300029308Marine harbor viral communities from the Indian Ocean - SRB2EnvironmentalOpen in IMG/M
3300031539Soil microbial communities from Risofladan, Vaasa, Finland - UN-3EnvironmentalOpen in IMG/M
3300031565Soil microbial communities from Risofladan, Vaasa, Finland - UN-2EnvironmentalOpen in IMG/M
3300031578Soil microbial communities from Risofladan, Vaasa, Finland - TR-2EnvironmentalOpen in IMG/M
3300031669Soil microbial communities from Risofladan, Vaasa, Finland - TR-1EnvironmentalOpen in IMG/M
3300031673Soil microbial communities from Risofladan, Vaasa, Finland - TR-3EnvironmentalOpen in IMG/M
3300032136Coastal sediment microbial communities from Delaware Bay, Delaware, United States - CS-6 worm burrowEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOWin2010_1008633733300000117MarineMSIYTTTDKCRSFSGEIETDNMADLVLTYELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAINILNQD*
JGI20160J14292_1003064853300001349Pelagic MarineMYTTTDKCRAFSGEIEKENMADLVLTDDLTCEDLPFKVVKRDLNSDMLFCSTRVLTEFINILNQD*
Ga0065861_104086323300004448MarineMYTTTDKCRSFSGEIETENMADLVLTDDLTCEDLPFEVVKRDLNKDLRFCSTKVLTEFMNILNQD*
Ga0065861_109140623300004448MarineLDMSIYTTTDKCRTFSGEIATENMTDFVLVDDLTCEDLPFEVVRRDLNKDMLFCSTRVLTEFMNILNQD*
Ga0066223_102332863300004461MarineMSIYTTTDKCRTFSGEIATENMTDFVLVDDLTCEDLPFEVVKRDLNKDMLFCSTRVLTEFMNILNQD*
Ga0074649_1005117173300005613Saline Water And SedimentMSIYTTTDKCRSFSGEIATENMADLVLTDDLTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQD*
Ga0076925_102521243300005748MarineMSIYTTTDKCRAFSGEIETDNMNDLVLTYELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAINILNQD*
Ga0075474_1001789053300006025AqueousMIIYTTTDKCRAFSGEIATENMADLVLVDELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQG*
Ga0075478_1007996823300006026AqueousMSIYTTTDKCRAFSGEIATDNMADLVLTYELTCEDLPFRVVKRDLNSDMLFCSLKTLTEAMNILNQA*
Ga0075478_1010509323300006026AqueousIYTTTDKCRAFSGEIATENMADLVLVDELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQG*
Ga0098054_114429823300006789MarineMYTTTDKCRSFSGEIETSQDVILTDELTCEDLPFEVVRRELNKDIRFCSLRVLSEAMNILNQD*
Ga0098055_108055633300006793MarineMSIYTTTDKARTFSGEIATDNMDDLVLTYELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQD*
Ga0070749_1000426863300006802AqueousMYTTTDKCRAFSGEIETENMDDLILIDELTCEDLPFMVVKRDLNRDMNFCSARLLTEFMNILNQG*
Ga0070754_1005751553300006810AqueousMYTTTDKCRSFSGEIATENMADLVLVDDLTCEDLPFRVVKRDLNSDSDMLFCSTRVLTEFMNILNQD*
Ga0070754_1010037013300006810AqueousSSLLFTSKQNKMIIYTTTDKCRAFSGEIATENMADLVLVDELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAINILNQD*
Ga0070754_1014566413300006810AqueousMSIYTTTDKCRAFSGEIETENMADLVLTYELTCEDLPFEVVKRDLNSDMLFCSLKTLTEAMNILNQD*
Ga0070754_1030896023300006810AqueousMYTTTDKCRSFSGEIEIENLPDLVLVDELTCEDLPFRVVRRELNKEFKFCSTRTLTEYLSTLNQD*
Ga0070754_1031537513300006810AqueousAFSGEIATENMADLVLVDELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQG*
Ga0070754_1048800323300006810AqueousMYTTTDKCRAFSGEIATDNMDDLVLTYELTCEDLPFKVVKRDLNKDMLFCSLKTLTEAMNIL
Ga0075481_1004201513300006868AqueousMIIYTTTDKCRAFSGEIATENMADLVLVDELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNIL
Ga0075481_1006175733300006868AqueousIYTTTDKCRAFSGEIATDNMADLVLTYELTCEDLPFRVVKRDLNSDMLFCSLKTLTEAMNILNQA*
Ga0075479_1019805823300006870AqueousMSIYTTTDKCRAFSGEIATENMADLVLVDELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQG*
Ga0070750_1013571223300006916AqueousMYTTTDKCRAFSGEIATENMTDLVLVDELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQD*
Ga0099851_102379533300007538AqueousMYTTTDKCRAFSGEIETENMDDLILIDELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQD*
Ga0099851_108458333300007538AqueousYTTTDKCRAFSGEIDTENMADLVLVDELTCEHLPFKVVKRDLNSDMLFCSLKTLTEAINILNQD*
Ga0099851_112135743300007538AqueousMYTTTDKCRAFSGEIETENMDDLILIDELTCEDLPFKVVKRDLNRDMNFCSAKVLTEFMNILNQD*
Ga0099848_104104023300007541AqueousMYTTTDKCRAFSGEIETENMPDLVLVDELTCEHLPFKVVKRDLNSDMLFCSLKTLTEAINILNQD*
Ga0099848_105204023300007541AqueousMYTTTDKCRAFSGEIDTENMADLVLVDELTCEHLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQD*
Ga0099848_126789623300007541AqueousMYTTTDKCRAFSGEIETENMDDLILIDELTCEDLPFKVVKRDLNRDMNFCSAKVLTEFINILNQY*
Ga0099846_110860113300007542AqueousMYTSTDKFFVFSETADTENMADLVLVDELTCEHLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQD*
Ga0099846_117892633300007542AqueousCRAFSGEIETENMDDLILIDELTCEDLPFEVVKRDLNSDMNFCSAKVLTEFINILNQY*
Ga0070751_123949613300007640AqueousMYTTTDKCRAFSGEIETENMADLVLVDELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQD
Ga0070751_129545613300007640AqueousMYTTTDKCRAFSGEIETENMDDLILIDELTCEDLPFMVVKRDLNSDMNFCSAKVLTEFLTILNQD*
Ga0099850_105012723300007960AqueousMYTTTDKCRAFSGEIETENMPDLVLVDELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAINILNQD*
Ga0099850_111694133300007960AqueousMYTTTDKCLAFNGEVDTENMADLVLVDELTCEHLPFKVVKRDLNSDMLFCSLKTLTEAINILNQD*
Ga0099850_119939733300007960AqueousMYTTTNKCRAFSGEIETENMDDLILIDELTCEDLPFEVVKRDLNSDMNFCSAKVLTEFINILNQY*
Ga0075480_1001275453300008012AqueousMIIYTTTDKCRAFSGEIATENMADLVLVDELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAINILNQY*
Ga0115371_1008512233300008470SedimentMYTTTDKCRSFSGEIETEKDIVLIDGVTCEHLPFEVVRRDLNKDMLFCSSKVLAEYLTLLNQD*
Ga0114918_1036512723300009149Deep SubsurfaceMYTTTDKCRAFSGEIETENLPDLVLVDELTCEDLPFKVVKRDLNSDMLFCSLKTLTETMNILNQD*
Ga0114918_1046846723300009149Deep SubsurfaceMSIYTTTDKCRAFSGEIETDNMNDLVLTYELTCEDLPFEVVKRDLNSDMLFCSTRVLTEFINILNQD*
Ga0114919_1011451413300009529Deep SubsurfaceMYTTTDKCRSFSGEIETENMVDLVLTYELTCEDLPFEVVKRDLNSDMLFCSLKTLTEAMNILNQD*
Ga0129333_1122763723300010354Freshwater To Marine Saline GradientMYTTTDKCRAFSGEIDTENMADLVLVDELTCEHLPFKVVKRDLNSDMLFCSLKTLTEAINILNQD*
Ga0181369_107352633300017708MarineMSIYTTTDKARTFSGEIEADNMADLVLTYELTCEDLPFKVVKRDLNKDMLFCSLKTSTEAINILNQ
Ga0187217_128830923300017770SeawaterMSIYTTTDKCRTFSGEIATENMADLVLTDDLTCEDLPFKVVRRDLNKDMLFCSLKTLTEAMNILNQD
Ga0181379_117613813300017783SeawaterTTDKARTFSGEIATDNMDDLVLTYELTCEDLPFRVVKRDLNSDMLFCSLKTLTEAMNILNQD
Ga0180437_1020496633300017963Hypersaline Lake SedimentMSIYTTTDKARTFSGEIETDNMDDLVLVDELNCEHLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQD
Ga0180437_1030885813300017963Hypersaline Lake SedimentQLKQVIMSIYTQTQTGKHTFSGEIESAQDVVLIDELTCEDLPFRVVRRELNKEFKFCSTRTLTEYLSTLNQD
Ga0180431_1006321753300017987Hypersaline Lake SedimentMYTKTDKCRSFSGEIEIENLPDLVLVDELTCEDLPFKVVRRELNKEFKFCSTRTLTEYLSTLNQD
Ga0180431_1046956113300017987Hypersaline Lake SedimentMSIYTTTDKARTFSGEIETENMADLVLVDELTCEDLPFKVVKRDLNRDMLFCSLKTLTEAMNILNQD
Ga0180432_1027578913300017989Hypersaline Lake SedimentMSIYTQTQNGKHTFSGEVETEMDVVLIDELTCEDLPFKVVKRDLNRDMLFCSLKTLTEAMNILNQD
Ga0180432_1039255843300017989Hypersaline Lake SedimentMSIYTQTQTGKHTFSGEIEIENLPYLVIVDELTCEDLPFKVVRRELNKEFKFCSTRTLTEYLSTLNQD
Ga0180434_1015649443300017991Hypersaline Lake SedimentMYTTTDKCRSFSGEIEIENLPDLVLVDELTCEDLPFRVVRRELNKEFKFCSTRTLTEYLSTLNQD
Ga0180434_1028969823300017991Hypersaline Lake SedimentMYTTTDKCRSFSGEIATENMADLVLVDELTCEDLPFKVVKRDLNSDMLFCSLRTLTEAMNILNQD
Ga0180434_1054806233300017991Hypersaline Lake SedimentMSIYTTTDKARTFSGEIETDNMADLVLVDELNCEHLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQD
Ga0181600_1005428283300018036Salt MarshMYTTTDKCRAFSGEIETENMADLVLVDELTCEYLPFKVVKRDLNSDMLFCSLKTLTEAINILNQD
Ga0180433_1074906023300018080Hypersaline Lake SedimentMSIYTQTQTGKHTFSGEIEIENLPDLVLIDELTCEDLPFKVVRRELNKEFKFCSTRTLTEYLSTLNQD
Ga0180433_1085595123300018080Hypersaline Lake SedimentMYTTTDKCRAFSGEIETENMADLVLVDGLTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQD
Ga0213869_1000223673300021375SeawaterMYTTTDKCRAFSGEIATENMTDFVLVDDLTCEDLPFEMVRRDLNKDMLFCSMRTLSEAMNILNQD
Ga0212021_110961623300022068AqueousMYTTTDKCRSFSGEIATENMADLVLVDDLTCEDLPFRVVKRDLNSDSDMLFCSTRVLTEFMNILNQD
Ga0212026_102724233300022069AqueousMSIYTTTDKCRAFSGEIATDNMADLVLTYELTCEDLPFRVVKRDLNSDMLFCSLKTLTEAMNILNQA
Ga0212027_104629913300022168AqueousMIIYTTTDKCRAFSGEIATENMADLVLVDELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNILN
Ga0212031_100822543300022176AqueousMYTTTDKCRAFSGEIETENMDDLILIDELTCEDLPFKVVKRDLNRDMNFCSAKVLTEFINILNQ
Ga0212031_104864323300022176AqueousMYTTTDKCRAFSGEIETENMADLILIDELTCEDLPFEVVKRDLNSDMNFCSAKVLTEFINILNQY
Ga0196899_107730543300022187AqueousMSIYTTTDKCRAFSGEIETENMADLVLTYELTCEDLPFEVVKRDLNSDMLFCSLKTLTEAMNILNQD
Ga0196905_101457753300022198AqueousMYTTTDKCRAFSGEIETENMDDLILIDELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQD
Ga0196905_102814433300022198AqueousMYTTTDKCRAFSGEIETENMPDLVLVDELTCEHLPFKVVKRDLNSDMLFCSLKTLTEAINILNQD
Ga0196905_104386223300022198AqueousMYTTTDKCRAFSGEIDTENMADLVLVDELTCEHLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQD
(restricted) Ga0233411_1020936923300023112SeawaterMYTTTDKCRSFSGEIETDNMSDLVLVDDLTCEDLPFEVVKRELNKDIRFCSLRVLSEAMNILNQD
(restricted) Ga0233412_10003257113300023210SeawaterMSIYTTTDKFRSFSGEIETDNMNDLVLTYELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQD
(restricted) Ga0233412_1000526493300023210SeawaterMYTTTDKCRSFSGEIETSQEVILTDELTCEDLPFEVVRRELNKDIRFCSLRVLSEAMNILNQD
(restricted) Ga0233412_1019390543300023210SeawaterSGEIATENMADLVLTDDLTCEDLPFEVVKRDLNSDMLFCSLKTLTEAMNILNQD
(restricted) Ga0233412_1028882023300023210SeawaterINIMYTTTDKCRSFSGEIETSQDVILTDDLTCEDLPFEMVRRDLNSDMLFCSTRVLTEFMNVLNQD
(restricted) Ga0233410_1008613323300023276SeawaterMYTTTDKCHSFSGEIETSQDVILTDDLTCEDLPFEMVRRDLNSDMLFCSTRVLTEFMNVLNQD
(restricted) Ga0255040_1004268123300024059SeawaterMSIYTTTDKCRAFSGEIATENMADLVLTDDLTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQD
(restricted) Ga0255039_1001972633300024062SeawaterMSIYTTTDKCRTFSGEIATENMADLVLTDDLTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNVLNQD
Ga0210003_103580323300024262Deep SubsurfaceMSIYTTTDKCRAFSGEIETDNMNDLVLTYELTCEDLPFEVVKRDLNSDMLFCSTRVLTEFINILNQD
(restricted) Ga0255049_1020955623300024517SeawaterMSIYTQTQTGKHTFSGEIETDNMNDLVLTYELTCEDLPFEAVKRDLNSDMLFCSLKTLTEAMNILNQD
(restricted) Ga0255048_1009681533300024518SeawaterMYTTTDKCRAFSGEIATENMTDFVLVDDLTCEDLPFEMVRRDLNKDMLFCSTRVLTEFMNVLNQD
Ga0208793_117331223300025108MarineSIYTTTDKARTFSGEIATDNMDDLVLTYELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQD
Ga0208149_100927233300025610AqueousMIIYTTTDKCRAFSGEIATENMADLVLVDELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQG
Ga0208161_100382953300025646AqueousMVTRRVRFPPTFLNFKIMYTTTDKCRAFSGEIETENMDDLILIDELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQD
Ga0208161_110155723300025646AqueousMYTTTDKCRAFSGEIETENMDDLILIDELTCEDLPFKVVKRDLNRDMNFCSAKVLTEFINILNQY
Ga0208019_110826633300025687AqueousMYTTTNKCRAFSGEIETENMDDLILIDELTCEDLPFEVVKRDLNSDMNFCSAKVLTEFINILNQY
Ga0208899_107060923300025759AqueousMYTTTDKCRAFSGEIATENMTDLVLVDELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQD
Ga0208899_122878413300025759AqueousMYTTTDKCRSFSGEIATENMADLVLVDDLTCEDLPFRVVKRDLNSDSDMLFCSTRVLTEF
Ga0209632_1001356933300025886Pelagic MarineMYTTTDKCRAFSGEIEKENMADLVLTDDLTCEDLPFKVVKRDLNSDMLFCSTRVLTEFINILNQD
Ga0208644_103005023300025889AqueousMYTTTDKCRAFSGEIETENMDDLILIDELTCEDLPFEVVKRDLNSDMNFCSARLLTEFMNILNQG
(restricted) Ga0255041_1016765013300027837SeawaterFSGEIETSQDVILTDDLTCEDLPFEMVRRDLNSDMLFCSTRVLTEFMNVLNQD
(restricted) Ga0233415_10001273213300027861SeawaterMSIYTTTEDCRSFSGEIETSQDVILTDELTCEDLPFEMVRRDLNSDMLFCSLKTLTEAMNILNQD
(restricted) Ga0233415_1002750353300027861SeawaterMLYTQNNSKHTFSGEIESEKEVVLIDELNCEDLPFEVVKRDLNSDMLFCSLKTLTEAMNILNQD
(restricted) Ga0233414_1046866913300028045SeawaterMSIYNTTDKCRAFSGEIATENMTDFVLVDDLTCEDLPFEVVRRDLNKDMLFCSLKTLTEAMNVLNQD
(restricted) Ga0233414_1064671023300028045SeawaterMYTTTDKCRSFSGEIETDNMSDLVLTYELTCEDLPFEVVKRDLNKDMLFCSLKTLTEAMNILNQD
Ga0135226_102145613300029308Marine HarborMYTTTDKCRAFSGEIATENMADLVLVDELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQD
Ga0307380_1063758733300031539SoilMYTTTDKCRSFSGEIETENMADLVLTDDLTCEDLPFEVVKRDLNSDMLFCSLKTLTEAMNILNQD
Ga0307380_1075366323300031539SoilMYTTTDKCRSFSGEIETENMVDLVLTYELTCEDLPFEVVRRDLNSDMLFCSLKTLTEAMNILNQD
Ga0307379_1050267633300031565SoilMYTTTDKCRSFSGEIETENMTDFVLVDDLTCEDLPFEVVRRDLNKDMLFCSLRTLSEAMNILNQD
Ga0307379_1099184323300031565SoilMYTTTDKCRSFSGEIATENMADLVLTYELTCEDLPFEVVKRDLNSDMLFCSLKTLTEAMNILNQD
Ga0307376_1018616543300031578SoilMYTTTDKCRSFSGEIETENMADLVLTDELTCEDLPFKVVKRDLNSDMLFCSLKTLTEAMNILNQD
Ga0307376_1051818033300031578SoilMYTTTDKFRAFSGEIETDNLPDLVLVDELTCEDLPFKVVRRDLNSDMLFCSLKTLTEAMNILN
Ga0307375_1069087713300031669SoilMSIYTTTDKCRAFSGEIATENMADLVLTDDLTCEDLPFEVVKRDLNSDMLFCSLKT
Ga0307377_1029778813300031673SoilMLYQTLEEEGRSFSGEIESEEVLVLIDELTCEDLPFKVVKRDLNRDMNFCSVKVLTEFLTILNQD
Ga0307377_1113435413300031673SoilMYTTTDKCRSFSGEIETENMADLVLTYELTCEDLPFEVVKRDLNSDMLFCSLKTLTEAMNILNQD
Ga0307377_1113955923300031673SoilMYTTTDKFRAFSGEIETDNLPDLVLVDELTCEDLPFKVVRRDLNSDMLFCSLKTLTEAMNILNQD
Ga0316201_1115162723300032136Worm BurrowMYTTTDKCRAFSGEIATENMADLVLVDELTCEDLPFKVVKRDLNSDSDMLFCSTRVLTEFMNILNQD

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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