Metagenome Family F097073

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097073
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	55 residues
Representative Sequence	MAAIGKERELRPHWQQVRELMLQEPDVAAVSWQVRLAVLKDAKLDVSKVPAK
Number of Associated Samples	75
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	21.05 %
% of genes near scaffold ends (potentially truncated)	11.54 %
% of genes from short scaffolds (< 2000 bps)	18.27 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (84.615 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.846 % of family members)
Environment Ontology (ENVO)	Unclassified (42.308 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.923 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00313	CSD	8.65
PF12844	HTH_19	1.92
PF14067	LssY_C	1.92
PF00816	Histone_HNS	1.92
PF00072	Response_reg	0.96
PF00027	cNMP_binding	0.96
PF06172	Cupin_5	0.96
PF04392	ABC_sub_bind	0.96
PF08734	GYD	0.96
PF06035	Peptidase_C93	0.96
PF13517	FG-GAP_3	0.96
PF02518	HATPase_c	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2916	DNA-binding protein H-NS	Transcription [K]	1.92
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.96
COG3542	Predicted sugar epimerase, cupin superfamily	General function prediction only [R]	0.96
COG3672	Predicted transglutaminase-like protein	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.96

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.62 %
All Organisms	root	All Organisms	15.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.62 %
cellular organisms	root	All Organisms → cellular organisms	15.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.62 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	15.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	15.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.62 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.62 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	13.46 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.46 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005172\|Ga0066683_10253660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1091	Open in IMG/M
3300005332\|Ga0066388_102872215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	880	Open in IMG/M
3300005332\|Ga0066388_103603129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	790	Open in IMG/M
3300005332\|Ga0066388_106181520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	604	Open in IMG/M
3300005332\|Ga0066388_108088602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	525	Open in IMG/M
3300006755\|Ga0079222_12301670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300009176\|Ga0105242_10988943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	848	Open in IMG/M
3300010048\|Ga0126373_11200954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	825	Open in IMG/M
3300010376\|Ga0126381_102308169	Not Available	773	Open in IMG/M
3300010398\|Ga0126383_12127200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	648	Open in IMG/M
3300016294\|Ga0182041_11638726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	595	Open in IMG/M
3300016422\|Ga0182039_10824482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	825	Open in IMG/M
3300018468\|Ga0066662_10740546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	945	Open in IMG/M
3300021560\|Ga0126371_10413979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1491	Open in IMG/M
3300021560\|Ga0126371_10890327	Not Available	1034	Open in IMG/M
3300021560\|Ga0126371_12552261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	619	Open in IMG/M
3300031573\|Ga0310915_10510887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	853	Open in IMG/M
3300032064\|Ga0318510_10173744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	860	Open in IMG/M
3300032076\|Ga0306924_11797583	Not Available	639	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.04%
Host-Associated	Host-Associated	0.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.04%
Plants	Host-Associated → Plants	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.77%
Loam	Environmental → Terrestrial → Soil → Loam	18.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	42.31%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.38%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	16.35%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.38%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	15.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066683_102536601	3300005172	Soil	DGGTLRTIGEACEYMAAIGKEREQRRHWQQVRELMLQEADVAAVSRRVRLAVLKDAKLDVSALSEPLR*
Ga0066388_1028722151	3300005332	Tropical Forest Soil	IGKERELRPHWQQVRELMLQETDVGAVSWRVRLAVLKDAKLDVSALSEPLR*
Ga0066388_1036031292	3300005332	Tropical Forest Soil	MAAIGKERELRPHWQQVRELMLQEPDVAAVSWQVRLAVLKDAKLDVSKVPAK*
Ga0066388_1043509481	3300005332	Tropical Forest Soil	LAAIGKERRLRWHQVRNLMLEEANVESVSWYVRLAVLKDAKLDVSKTPAE*
Ga0066388_1057271471	3300005332	Tropical Forest Soil	MAAISRKREQRRHWEQVRELIHQEADVDAVSWQLRLAILKDAKLVLSALS*
Ga0066388_1061815201	3300005332	Tropical Forest Soil	VPPGLLVAADSLRTILEACEYMAAIGKERELRPHWQQIRELMLREADVAAVTWRVRLAVLKDAKLDVSALLSEPLT*
Ga0066388_1080886022	3300005332	Tropical Forest Soil	KDGGTLRTILEACEYMAAIGKERELRPHWQQVRELMLQELDVAAVSWQVRLAVLKDAKLDVSKVPAK*
Ga0070713_1021124312	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MAAIGKERELRPHWQQVRELMLQEVDVAAVSWRVRLAVLKDAKLDV
Ga0070707_1005130792	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MAAISKEREQRRHWQQVRELIDQEADVDAVSWDLRIAVLKDAKLDVAAMA*
Ga0066692_103025712	3300005555	Soil	MLRTILEACEYMAAIGKERELRPHWQQVRELMLQEVDVAAVSWRVRLAVLKDAKLDVSALSEPPT*
Ga0066905_1005986933	3300005713	Tropical Forest Soil	MAAIGNERELRPHWQRVRELMLQEADVAALSSRVRLAVLKDAKL
Ga0066905_1022847422	3300005713	Tropical Forest Soil	QQVRELIDQEADVDAISWKLRLAILKDAKLDVSKVPAK*
Ga0066905_1022939502	3300005713	Tropical Forest Soil	VSYVRIGRVRELIDQEADVDAVSWKLRLAILKDAKLDVSKVLAK*
Ga0066903_1004276744	3300005764	Tropical Forest Soil	MAAISEEREQRRHWQQVRELIDQEADVAAVSWKLPLAILKDAKLDVSKVPAK*
Ga0066903_1007718771	3300005764	Tropical Forest Soil	MAAISNEREQRRHWQQVRELIDQEADVDAISWKLRLAILKDAKLDVSKVPAK*
Ga0066903_1042669982	3300005764	Tropical Forest Soil	ILEACEYMAAIGKERALRPHWQQVRELMLQEPDVAAVSWQLRLAVLKDAKLDVSKVPAK*
Ga0066903_1056758101	3300005764	Tropical Forest Soil	QQVRELMLQEPDVAAVSWQVRLAVLKDAKLDVSKVPAK*
Ga0066903_1065919772	3300005764	Tropical Forest Soil	MAAIGKERELRPHWQQIRELMLREADVAAVTWRVRLAVLKDAKLDVSALLSEPLT*
Ga0066903_1083369271	3300005764	Tropical Forest Soil	MAAIGKERELRPHWQRVRELMLQEADVAALSSRVRLAVLKDAKL
Ga0079222_123016701	3300006755	Agricultural Soil	HNSGSAIGKERELRRHWQQVAKLILEEADVASVSWQLRLALLKDAKLDVAKMPA*
Ga0066665_113781032	3300006796	Soil	MAAIGKQRELRRHWQHVRKLILEEADVVAVSWQLRLAVLKDAKLDVAADQAIGKE
Ga0066665_114685481	3300006796	Soil	MAAIGEERELRPHCQRVRELMLQEADVAALSSRVQLAVLKDAKLD
Ga0099791_101548882	3300007255	Vadose Zone Soil	MLRTILEACEYMAAIGKERELRPHWQQVRELMLQEVDVAAVSWRVRLAVLKDAKLEASALSHAPT*
Ga0105242_109889432	3300009176	Miscanthus Rhizosphere	MAAIGKEREQRLHWQRVREVMLQEADEAAVTWRVQLAVLKDAKLDVTALSEPIERMIGE
Ga0126380_113295672	3300010043	Tropical Forest Soil	MAAIGKERELRPHWKQVRELMLQEADAAAVSWQVRLAVLKDAKLDVSKVPAK*
Ga0126384_102154292	3300010046	Tropical Forest Soil	MAAISEVRAQRPHWHQVRKLILEEADVAAVSWQLRLALLKDAKFDLAATFA*
Ga0126384_114155642	3300010046	Tropical Forest Soil	LRTIQQGCQYMAAISKEREQRRHWQQVRELIDQEADVDAVSWKLRIAVLKDAKLVGTRPQAAAE*
Ga0126373_112009543	3300010048	Tropical Forest Soil	GTLRTILEACEYMAAIGKERELRPHWQQVRELMLQEPDVAAISWQVRLAVLKDAKLDVSKVPAK*
Ga0099796_104385781	3300010159	Vadose Zone Soil	TKDGGTLHTIQEAWEYMAAISKEREQRRHWQQVRKMILDEEANMAAVSWQLRLAVLKDAKLDVTKMGT*
Ga0126370_114545053	3300010358	Tropical Forest Soil	ACEYMAAIGKERELRPHWQQVRELMLQEPDVAAVSWQVRLAVLKDAKLDVSKVPAK*
Ga0126370_122299762	3300010358	Tropical Forest Soil	AIGNERELRPHWLQIRELMLQEADVAAVTWRVRLAVLKDAKLDVSALLSEPLT*
Ga0126381_1023081693	3300010376	Tropical Forest Soil	MLQEPDVTAVSWQVRLAALKDAKLAKLDVSKVPAKCV
Ga0126381_1024684102	3300010376	Tropical Forest Soil	TLRTILEACEYMAAIGKERELRPHWQQVRELMLQEPDVTAVSWQVRLAVLKDAKLDVSKVPAK*
Ga0126383_121227932	3300010398	Tropical Forest Soil	LRPHWRQVRELMLQEAEVAAVSWQVRLAVLKDAKLDVSALLEPLT*
Ga0126383_121272002	3300010398	Tropical Forest Soil	MVAIGKERELRPHWQQVRELMLQEAEVAAVSWRVRLAVLKDAKLDVSALSEPFT*
Ga0126383_133836961	3300010398	Tropical Forest Soil	TILEACEYMAAIGKERELRSHWQQVRELIDQEADVDAVSWKLRLAILKDAKLDVSKVPVK
Ga0124844_10154225	3300010868	Tropical Forest Soil	MAAIGKERELRPHWQQVRELMLQEPDVAAVSWQVRLAVLKDAKLDVSKVP
Ga0137391_113236102	3300011270	Vadose Zone Soil	RVKEREQRRHWQQVRKMILDEEANMAAVSWQLRLAVLKDAKLDVTKMGT*
Ga0137383_112545131	3300012199	Vadose Zone Soil	QRMAARRVLELRPHWQRVRELMLQEAEVAAVSWQVRLAALKDAKLDVSALSEPLR*
Ga0137365_100884395	3300012201	Vadose Zone Soil	MAAIGKERELRRHWQQVRELMLQEADVAALSSRLRLAVLKDAKLDVTALSEP*
Ga0137363_104094331	3300012202	Vadose Zone Soil	MLRTILEACEYMAAIGKERELRPHWQQVRELMLQEVDVAAVSWRVRLAVLKDAKL
Ga0137363_106908231	3300012202	Vadose Zone Soil	TIGKERELRPHWHQVRELMLQEAEVAAVSSQVRLAVLKDAKLDVSALSKPLT*
Ga0137363_110155091	3300012202	Vadose Zone Soil	MTAISKEREQRRHWQQVRKMILDEEANMAAVTWQLRLAVLKDAKLDLTKMPV*
Ga0137380_100454052	3300012206	Vadose Zone Soil	MAAISKEREQRRHWQQVRELIDQEADVDAVSWNLRIAVLKDAKLDVAAMA*
Ga0137379_116746091	3300012209	Vadose Zone Soil	CEYMAAIGRERELRRHPQHVRKQILEEADVAAVSWQLRLAILKDAKLDVSASCSWIGGRPC*
Ga0137367_107713474	3300012353	Vadose Zone Soil	MAAIGKERELRRHWQQVRELMLQEADVAAVSRQFRLAVLKDAKVDVTALS
Ga0137360_100607785	3300012361	Vadose Zone Soil	MLRTILEACEYMAAIGKERELRPHWQQVRELMLQEVDVAAVSWRARLAVLKDAKLDVSALSEPPT*
Ga0137360_106016861	3300012361	Vadose Zone Soil	LTRPLPTKDGGTLRTIKTCAAIGKEREQRPRWQQVRQVILEEADAAALSCQIRLAVLKHAKLDVSGMNT*
Ga0137358_104736161	3300012582	Vadose Zone Soil	FRASNAHCAKAPCTGGMLRTILEACEYMAAIGKERELRPHWQQVRELMLQEVDVAAVSWRVRLAVLKDAKLDVSALSEPPT*
Ga0137359_108461201	3300012923	Vadose Zone Soil	ISKEREQRRHWQQVRKMILDEEANMAAVTWQLRLAVLKDAKLDLTKMPV*
Ga0126375_104763941	3300012948	Tropical Forest Soil	DGGTLRTIQQGCQYMAAISKEREQRRHWQQVRELIDQEADVDAVSWKLRIAVLKDAKLVGTRPQAAAE*
Ga0126369_100967521	3300012971	Tropical Forest Soil	PTKDGGTLRTIFEACEYMAAIGKERELRPHWQQVRELMLQEPDVAAVSWQVRLAVLKDAKLDVSKVPAK*
Ga0126369_109895761	3300012971	Tropical Forest Soil	LRPHWQQVRELMLQEPDVAAVSWQVRLAVLKDAKLDVSKVPAK*
Ga0182041_116387261	3300016294	Soil	ACEYMAAIGKERELRPHWQQVRELMLQEADVAAVSWKLRLAILKDAKLDVSKVPAK
Ga0182041_116794931	3300016294	Soil	TILEACEYMAAIGKERQLRPHWQQVRELMLQEAEVAAVSWRVWLSVLKDGKLDVSALSEPLT
Ga0182033_109888272	3300016319	Soil	TKDGGTLRTILEACEYMAAIGKERELRPHWQQVRELLLQEPDVAAVSWQVRLAVLKDAKLDVSKVPAK
Ga0182035_118809241	3300016341	Soil	AIGKERELRPHWQQVGELIDQEADVDAVSWQVRLAVLKDAKLDVSKVPTK
Ga0182032_101155627	3300016357	Soil	TILEACEYMAAIGKERELRPHWLQIRELMLQEPDVAAVSWKLRLAILKDAKLDVSKVPAK
Ga0182039_108244822	3300016422	Soil	LRTILEACEYMAAIGKERELRRHWQQVRELLLQEPDVAAVSWQVRLAVLKDAKLDVSKVPAK
Ga0066662_107405462	3300018468	Grasslands Soil	MLRTILEACEYMAAIGKERELRPHWQQVRELMLQEVDVAAVSWRVRLAVLKDAKLDVSALSEPPT
Ga0126371_104139793	3300021560	Tropical Forest Soil	MAVISKEREQRTHWRQIRELIDQEADVDAVSWKLRLAILKDAKLDVSKVRAK
Ga0126371_108903273	3300021560	Tropical Forest Soil	LRPHWQQVRELMLQEPDVAAVSWQVRLAVLKDAKLDVSKVPAK
Ga0126371_125522612	3300021560	Tropical Forest Soil	MAAIGKERELRPHWQQVRELMLQEPDVAAVSWQVRLAVLKDAKLDVSKVPAK
Ga0207646_103960222	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MAAISKEREQRRHWQQVRELIDQEADVDAVSWDLRIAVLKDAKLDVAAMA
Ga0209577_104649153	3300026552	Soil	MLRTILEACEYMAAIGKERELRPHWQQVRELMLQEVDVAAVSWRVRLAVLKDAKLDVS
Ga0209588_12034781	3300027671	Vadose Zone Soil	VEDGGTLRTIQHVCDYMAAIGKEREQRRHWQQVRQLILGEADASVVSWQIRLAVLKDAKLDVSATNT
Ga0318534_105527281	3300031544	Soil	KEREQRRHWQQVCELIDQEADVDAVSWKLRIAVLKDAKLDVAAMT
Ga0318541_107613853	3300031545	Soil	GKERELRPHWHQVRELMLQEAEVAAVSSQVRLAVLKDAKLDVSALSKPPT
Ga0318571_100506923	3300031549	Soil	AAISREREQRRHWQQVRELIHQEADVDAVSWQLRLAILKDAKLVLSALS
Ga0310915_105108874	3300031573	Soil	RTILEACEYMAAIGKERELRPHWQQVRELMLQEPDVAAVSWKLRLAILKDAKLDVSKVPA
Ga0318555_100593184	3300031640	Soil	QVRELIDQEADVDTVSWKLGLAILKDAKLDVSKVPTK
Ga0318574_101029466	3300031680	Soil	AAIGNERELRPHWQQVRELMLQEPDVAAVSWKLRLAILKDAKLDVSKVPAK
Ga0306917_113170151	3300031719	Soil	KDGGTLRTILEACEYMAAIGKERELRPHWQQVRELMLQEADVAAVSWQVRLAVLKDAKLDVSKVPAK
Ga0306918_100508375	3300031744	Soil	CEYMAAISHEREQRRHWRQVRELIDQEADVDTVSWKLGLAILKDAKLDVSKVPTK
Ga0318502_110030192	3300031747	Soil	AYEYMATIGKERELRPHWHQVRELMLQEAEVAAVSSQVRLAVLKDAKLDVSALSKPPT
Ga0318492_106266251	3300031748	Soil	AIGKERELRPHWQQVRELMLQEADVAAVSRRVRLAVLKDAKLNVSAVSEPLT
Ga0318529_101841022	3300031792	Soil	LRTIQQGCQYMDAISKEREQRRHWQQVCELIDQEADVDAVSWKLRIAVLKDAKLDVAAMA
Ga0318568_107402991	3300031819	Soil	YMAAIRKEREQRRHWQQVCELIDQEADVDAVSWKLRIAVLKDAKLDVAAMA
Ga0318564_104716841	3300031831	Soil	GCEYMAAISREREQRRHWQQVRELIHQEADVDAVSWQLRLAILKDAKLVLSALS
Ga0318499_102379304	3300031832	Soil	LRPHWLQIRELMLQEPDVAAVSWKLRLAILKDAKLDVSKVPAK
Ga0306919_107948411	3300031879	Soil	ELRRHWQQVRELLLQEPDVAAVSWQVRLAVLKDAKLDVSKVPAK
Ga0318544_102703054	3300031880	Soil	GKERELRPHWQQVRELMLQEPDVAAVSWKLRLAILKDAKLDVSKVPAK
Ga0306925_118432862	3300031890	Soil	IPTKDGGTLRTILEACEYVAAIGKERELRPHWQQVRELMLQEADVAAVSWQVRLAVLKDAKLDVSKVPAK
Ga0318522_101764324	3300031894	Soil	LEACEYMAAIGKERELRPHWLQIRELMLQEPDVAAVSWKLRLAILKDAKLDVSKVPAK
Ga0310909_111069301	3300031947	Soil	KLRTILEACEYMAAIGKERELRPHWLQIRELMLQEADVAAVTWRVRLAVLKDAKLDVSALLSEPLT
Ga0310909_111823381	3300031947	Soil	ILEACEYIAAIGKERELRPHWQQVRELMLQEPDVAAVSWQVRFAVLKDAKLDLSKVPAK
Ga0306922_102975416	3300032001	Soil	AIGNERELRPHWQQVRELMLQEPDVAAVSWKLRLAILKDAKLDVSKVPAK
Ga0318569_102536251	3300032010	Soil	MAAISREREQRRHWQQVRELIHQEADVDAVSWQLRLAILKDAKLEQIPVEFT
Ga0310911_102757082	3300032035	Soil	MAAISKEREQRRHWQQVCELIDQEADVDAVSWKLRIAVLKDAKLDVAAMT
Ga0310911_103702582	3300032035	Soil	MAAISNEREQRRHWHQVRELIDEEADVDAVSWQLRLAILKERNVRI
Ga0318532_101384182	3300032051	Soil	MAAIRKEREQRRHWQQVCELIDQEADVDAVSWKLRIAVLKDAKLDVAAMT
Ga0318506_104841093	3300032052	Soil	ILEACEYMAAIGKERELRPHWQQVRELMLQEADVAAVLRLAILKDAKLDVSKVPAK
Ga0318570_105465881	3300032054	Soil	DGGTLRTILEACEYMAAIGKERELRPHWQQVRELMLQEADVAAVSWKLRLAILKDAKLDVSKVPAK
Ga0318575_106617852	3300032055	Soil	RPHWQQVRELMLQEADVAAVSWQVRLAVLKDAKLDVSKVPAK
Ga0318505_101024324	3300032060	Soil	MAAIGKERELRAHWQQVRELMLQEADVVAVSWQVRLAVLKHAKLDALR
Ga0318510_101737441	3300032064	Soil	CEYMAAIGKERELRPHWQQVRELMLQEADVAAVLRLAILKDAKLDVSKVPAK
Ga0318553_105122521	3300032068	Soil	PIPTKDGGTLHTILEACEYMAAIGKERELRPHWLQIRELMLQEPDVAAVSWKLRLAILKDAKLDVSKVPAK
Ga0306924_106044186	3300032076	Soil	IPTKDGGTLRTILEACEYMAAIGKERELRPHWQQVRELMLQEPDVAAVSWKLRLAILKDAKLDVSKVPAK
Ga0306924_111420661	3300032076	Soil	AAIGKERELRPHWQQVRELMLQEADVAAVSWQVRLAVLKDAKLDVSKVPAK
Ga0306924_117975832	3300032076	Soil	MAAIGKERQLRPHWQQVRELMLQEAEVAAVSWRVWLAVLKDGKLDVSALSEPLT
Ga0318518_105867571	3300032090	Soil	EYMVAISHEREQRRHWRQVRELIDQEADVDTVSWKLGLAILKDAKLDVSKVPTK
Ga0318577_105162291	3300032091	Soil	RTILEGCEYMVAISHEREQRRHWRQVRELIDQEADVDTVSWKLGLAILKDAKLDVSKVPT
Ga0310914_118605651	3300033289	Soil	EYMAAIGKERELRPHWLQIRELMLQEADVAAVTWRVRLAVLKDAKLDVFALLSEPLT
Ga0318519_110174631	3300033290	Soil	GKERELRRHWQQVRELLLQEPDVAAVSWQVRLAVLKDAKLDVSKVPAK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F097073

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences