Metagenome / Metatranscriptome Family F097176

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097176
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	47 residues
Representative Sequence	LLIEGQLLSQEQDLRAQGCARAEQETEEKKSVRDQIGDQVKQRIQ
Number of Associated Samples	73
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	4.81 %
% of genes near scaffold ends (potentially truncated)	81.73 %
% of genes from short scaffolds (< 2000 bps)	73.08 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (80.769 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.038 % of family members)
Environment Ontology (ENVO)	Unclassified (38.462 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.808 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Mixed	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.90% β-sheet: 0.00% Coil/Unstructured: 41.10%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF08238	Sel1	3.85
PF13847	Methyltransf_31	3.85
PF01545	Cation_efflux	3.85
PF00498	FHA	2.88
PF13676	TIR_2	2.88
PF13565	HTH_32	1.92
PF00271	Helicase_C	1.92
PF04264	YceI	1.92
PF13424	TPR_12	1.92
PF04185	Phosphoesterase	1.92
PF01541	GIY-YIG	0.96
PF02604	PhdYeFM_antitox	0.96
PF00196	GerE	0.96
PF00149	Metallophos	0.96
PF13426	PAS_9	0.96
PF05016	ParE_toxin	0.96
PF03551	PadR	0.96
PF08281	Sigma70_r4_2	0.96
PF00400	WD40	0.96
PF06742	DUF1214	0.96
PF13620	CarboxypepD_reg	0.96
PF14559	TPR_19	0.96
PF05163	DinB	0.96
PF12728	HTH_17	0.96
PF13431	TPR_17	0.96
PF01850	PIN	0.96
PF05936	T6SS_VasE	0.96
PF07676	PD40	0.96
PF13683	rve_3	0.96
PF02082	Rrf2	0.96
PF00165	HTH_AraC	0.96
PF13353	Fer4_12	0.96
PF06472	ABC_membrane_2	0.96
PF13407	Peripla_BP_4	0.96
PF07519	Tannase	0.96
PF00702	Hydrolase	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	3.85
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	3.85
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	3.85
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	1.92
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	1.92
COG0640	DNA-binding transcriptional regulator, ArsR family	Transcription [K]	0.96
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	0.96
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.96
COG1725	DNA-binding transcriptional regulator YhcF, GntR family	Transcription [K]	0.96
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.96
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.96
COG1959	DNA-binding transcriptional regulator, IscR family	Transcription [K]	0.96
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.96
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.96
COG2188	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.96
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.96
COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	Transcription [K]	0.96
COG2524	Predicted transcriptional regulator, contains C-terminal CBS domains	Transcription [K]	0.96
COG3522	Predicted component of the type VI protein secretion system	Intracellular trafficking, secretion, and vesicular transport [U]	0.96
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.96
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	0.96
COG5402	Uncharacterized protein, contains DUF1214 domain	Function unknown [S]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.77 %
Unclassified	root	N/A	19.23 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.77 %
Unclassified	root	N/A	19.23 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.77 %
Unclassified	root	N/A	19.23 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	59.62 %
Unclassified	root	N/A	19.23 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	40.38 %
Unclassified	root	N/A	19.23 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.46 %
Unclassified	root	N/A	19.23 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	5.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
Acidobacteria bacterium 13_2_20CM_57_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_7	0.96 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.96 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.46 %
Unclassified	root	N/A	19.23 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.96 %
Acidobacteria bacterium 13_2_20CM_57_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_7	0.96 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.46 %
Unclassified	root	N/A	19.23 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.96 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.96 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.96 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.96 %
Acidobacteria bacterium 13_2_20CM_57_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_7	0.96 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.46 %
Unclassified	root	N/A	19.23 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
unclassified Acidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium	0.96 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	0.96 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.96 %
Edaphobacter modestus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter modestus	0.96 %
Acidobacteria bacterium 13_2_20CM_57_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_7	0.96 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.46 %
Unclassified	root	N/A	19.23 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	0.96 %
Acidobacterium sp. S8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp. S8	0.96 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.96 %
Edaphobacter modestus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter modestus	0.96 %
Acidobacteria bacterium 13_2_20CM_57_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_7	0.96 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459022\|GZEQPF102JQ376	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
2209111022\|2221217612	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300001867\|JGI12627J18819_10024317	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2487	Open in IMG/M
3300002917\|JGI25616J43925_10402376	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300004152\|Ga0062386_100220836	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1495	Open in IMG/M
3300004633\|Ga0066395_10054326	All Organisms → cellular organisms → Bacteria	1786	Open in IMG/M
3300005176\|Ga0066679_10084708	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1900	Open in IMG/M
3300005450\|Ga0066682_10350584	Not Available	951	Open in IMG/M
3300005526\|Ga0073909_10310985	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	719	Open in IMG/M
3300005574\|Ga0066694_10091051	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1420	Open in IMG/M
3300006642\|Ga0075521_10261517	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	828	Open in IMG/M
3300006797\|Ga0066659_10534814	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	944	Open in IMG/M
3300009090\|Ga0099827_11433360	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300010048\|Ga0126373_11431432	Not Available	757	Open in IMG/M
3300010154\|Ga0127503_11195029	Not Available	578	Open in IMG/M
3300010361\|Ga0126378_10215092	All Organisms → cellular organisms → Bacteria	2004	Open in IMG/M
3300010361\|Ga0126378_11683270	Not Available	721	Open in IMG/M
3300010364\|Ga0134066_10197743	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	664	Open in IMG/M
3300010376\|Ga0126381_100192724	Not Available	2718	Open in IMG/M
3300012198\|Ga0137364_10037086	All Organisms → cellular organisms → Bacteria → Acidobacteria	3162	Open in IMG/M
3300012198\|Ga0137364_10766568	Not Available	729	Open in IMG/M
3300012198\|Ga0137364_10953641	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	650	Open in IMG/M
3300012198\|Ga0137364_11291544	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300012198\|Ga0137364_11392478	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300012198\|Ga0137364_11458141	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
3300012200\|Ga0137382_10125011	Not Available	1722	Open in IMG/M
3300012200\|Ga0137382_10380617	Not Available	993	Open in IMG/M
3300012200\|Ga0137382_10935254	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	624	Open in IMG/M
3300012200\|Ga0137382_11334937	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300012202\|Ga0137363_11567197	Not Available	550	Open in IMG/M
3300012203\|Ga0137399_10870977	All Organisms → cellular organisms → Bacteria → Acidobacteria	758	Open in IMG/M
3300012208\|Ga0137376_11567848	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	550	Open in IMG/M
3300012209\|Ga0137379_10691278	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300012211\|Ga0137377_10296854	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1550	Open in IMG/M
3300012211\|Ga0137377_11549934	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300012285\|Ga0137370_10079475	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1815	Open in IMG/M
3300012351\|Ga0137386_10764991	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300012683\|Ga0137398_10010085	All Organisms → cellular organisms → Bacteria	4733	Open in IMG/M
3300012918\|Ga0137396_10994614	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	608	Open in IMG/M
3300012971\|Ga0126369_11640154	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	733	Open in IMG/M
3300012977\|Ga0134087_10167988	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	965	Open in IMG/M
3300014496\|Ga0182011_11019658	Not Available	512	Open in IMG/M
3300015241\|Ga0137418_10111632	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2448	Open in IMG/M
3300016270\|Ga0182036_10070514	Not Available	2276	Open in IMG/M
3300016270\|Ga0182036_10078548	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2177	Open in IMG/M
3300016270\|Ga0182036_10408124	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1060	Open in IMG/M
3300016294\|Ga0182041_10664886	Not Available	921	Open in IMG/M
3300016319\|Ga0182033_10150562	All Organisms → cellular organisms → Bacteria	1795	Open in IMG/M
3300016341\|Ga0182035_11266896	All Organisms → cellular organisms → Bacteria → Acidobacteria	660	Open in IMG/M
3300016357\|Ga0182032_10657763	All Organisms → cellular organisms → Bacteria → Acidobacteria	876	Open in IMG/M
3300016371\|Ga0182034_11091576	Not Available	692	Open in IMG/M
3300016387\|Ga0182040_10030045	All Organisms → cellular organisms → Bacteria	3166	Open in IMG/M
3300016387\|Ga0182040_10078169	Not Available	2171	Open in IMG/M
3300019885\|Ga0193747_1001087	All Organisms → cellular organisms → Bacteria → Acidobacteria	7681	Open in IMG/M
3300019887\|Ga0193729_1003442	All Organisms → cellular organisms → Bacteria	7782	Open in IMG/M
3300020001\|Ga0193731_1000317	All Organisms → cellular organisms → Bacteria	16615	Open in IMG/M
3300020001\|Ga0193731_1000780	All Organisms → cellular organisms → Bacteria	9586	Open in IMG/M
3300020006\|Ga0193735_1005035	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4249	Open in IMG/M
3300020581\|Ga0210399_10246098	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter modestus	1490	Open in IMG/M
3300020581\|Ga0210399_11371281	Not Available	554	Open in IMG/M
3300020583\|Ga0210401_11319671	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300021407\|Ga0210383_10209634	Not Available	1668	Open in IMG/M
3300021478\|Ga0210402_10961139	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	781	Open in IMG/M
3300021559\|Ga0210409_10230259	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	1681	Open in IMG/M
3300024288\|Ga0179589_10123276	All Organisms → cellular organisms → Bacteria → Acidobacteria	1082	Open in IMG/M
3300025507\|Ga0208188_1053270	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1009	Open in IMG/M
3300026333\|Ga0209158_1094573	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1147	Open in IMG/M
3300027371\|Ga0209418_1036306	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	863	Open in IMG/M
3300027812\|Ga0209656_10007778	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6866	Open in IMG/M
3300027812\|Ga0209656_10459071	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300027889\|Ga0209380_10443218	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	760	Open in IMG/M
3300031057\|Ga0170834_101220669	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531	Open in IMG/M
3300031057\|Ga0170834_105274240	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300031768\|Ga0318509_10695197	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300031771\|Ga0318546_10523065	All Organisms → cellular organisms → Bacteria → Acidobacteria	833	Open in IMG/M
3300031781\|Ga0318547_10016752	All Organisms → cellular organisms → Bacteria → Proteobacteria	3525	Open in IMG/M
3300031820\|Ga0307473_11544983	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300031833\|Ga0310917_10062265	All Organisms → cellular organisms → Bacteria	2319	Open in IMG/M
3300031835\|Ga0318517_10196997	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp. S8	907	Open in IMG/M
3300031879\|Ga0306919_10190899	Not Available	1517	Open in IMG/M
3300031890\|Ga0306925_10073653	All Organisms → cellular organisms → Bacteria → Proteobacteria	3595	Open in IMG/M
3300031890\|Ga0306925_10086577	All Organisms → cellular organisms → Bacteria → Acidobacteria	3321	Open in IMG/M
3300031890\|Ga0306925_10191980	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2201	Open in IMG/M
3300031890\|Ga0306925_10214534	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2076	Open in IMG/M
3300031890\|Ga0306925_10862319	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	934	Open in IMG/M
3300031910\|Ga0306923_10071996	All Organisms → cellular organisms → Bacteria	3858	Open in IMG/M
3300031910\|Ga0306923_11844274	Not Available	619	Open in IMG/M
3300031941\|Ga0310912_10021265	All Organisms → cellular organisms → Bacteria	4300	Open in IMG/M
3300031941\|Ga0310912_10064327	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2620	Open in IMG/M
3300031941\|Ga0310912_10279400	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1290	Open in IMG/M
3300031941\|Ga0310912_11324827	Not Available	545	Open in IMG/M
3300031946\|Ga0310910_10348469	All Organisms → cellular organisms → Bacteria → Acidobacteria	1170	Open in IMG/M
3300031947\|Ga0310909_10513270	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1004	Open in IMG/M
3300031947\|Ga0310909_10523578	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	993	Open in IMG/M
3300031947\|Ga0310909_10625474	Not Available	898	Open in IMG/M
3300031954\|Ga0306926_10198892	All Organisms → cellular organisms → Bacteria	2487	Open in IMG/M
3300031954\|Ga0306926_10310469	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_7	1952	Open in IMG/M
3300031954\|Ga0306926_11021775	All Organisms → cellular organisms → Bacteria → Acidobacteria	982	Open in IMG/M
3300032035\|Ga0310911_10417573	All Organisms → cellular organisms → Bacteria → Acidobacteria	776	Open in IMG/M
3300032076\|Ga0306924_10360798	All Organisms → cellular organisms → Bacteria → Acidobacteria	1665	Open in IMG/M
3300032261\|Ga0306920_100314765	All Organisms → cellular organisms → Bacteria	2330	Open in IMG/M
3300032261\|Ga0306920_101120116	All Organisms → cellular organisms → Bacteria	1141	Open in IMG/M
3300032261\|Ga0306920_101692895	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	896	Open in IMG/M
3300033289\|Ga0310914_10010053	All Organisms → cellular organisms → Bacteria	6982	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.19%
Aquatic	Environmental → Aquatic	4.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.19%
Freshwater	Environmental → Aquatic → Freshwater	4.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	90.38%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.85%
Loam	Environmental → Terrestrial → Soil → Loam	3.85%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	47.12%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.96%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.96%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.04%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	22.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.81%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.92%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.96%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.96%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.96%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459022	Grass soil microbial communities from Rothamsted Park, UK - FA2 (control condition)	Environmental	Open in IMG/M
2209111022	Grass soil microbial communities from Rothamsted Park, UK - Chitin enrichment	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014496	Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025507	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FA2_08556120	2170459022	Grass Soil	MDLSLLIEGQLLSQEQNLSAQCCARAEQETEEKKYVPGQISYQVKQRIQ
2222063015	2209111022	Grass Soil	LDLSLLIEGQLLSQEQDLRAQGCARAEQETEEKKYVRDQIGDQVKQRIQ
JGI12627J18819_100243172	3300001867	Forest Soil	LDLPLLIEGQLLSQEEDLHAQGYARTEQETEEKKPVRDQIGDQVKQRIQ*
JGI25616J43925_104023762	3300002917	Grasslands Soil	LDLSLLIEGKLLSQKQDFRAEGCARAEQETEEKKPVRDQIGDQDKKRIQ*
Ga0062386_1002208361	3300004152	Bog Forest Soil	VQSSWLDLPLLIEGQLLSQEQDLRAQGCARAEQETEEKKSIRDQIGDEAENSSSA*
Ga0066395_100543263	3300004633	Tropical Forest Soil	LLIEGQLLSQEQDLRAQGCARAEQETEEKKSVRDQIGDQVKQRIQ*
Ga0066679_100847084	3300005176	Soil	LNLPLLIEGQLVSQEEDLHAQGCARAEKETEEKKAVRDQIGDQVKQRIQ*
Ga0066682_103505842	3300005450	Soil	SLLIEGQLLSQKQDFRAEGCARAEQETEEKKPVRDQVGDQDTQRIQ*
Ga0073909_103109852	3300005526	Surface Soil	LDLPLLIAGQLLSQQQNLRAQGCARVEQETEEKKYVPGQISDQVKQRIQ*
Ga0066694_100910511	3300005574	Soil	MDLSLLIEGQLLSQKQDFRAEGCARAEQETEEKKPVRDQIGDPDKQRIQ*
Ga0075521_102615171	3300006642	Arctic Peat Soil	LDPPLLIEGQLLSQEEDLRTQGCARAEQETEEKKPFRDQIGDQVKQRIQ*
Ga0066659_105348142	3300006797	Soil	GVVQSSWLDLSLLIEGQLLSQKQDFRAEGCARAEQETEEKKAVRDQIGDQDTQRIQ*
Ga0099827_114333601	3300009090	Vadose Zone Soil	SWLDLSLLIEGQLLSQKQDFRAEGCARAEQETEEKKPVRDQIGDQDKQRIQ*
Ga0126373_114314321	3300010048	Tropical Forest Soil	EQDLRAQGCARAEQETEEKKSVRDQIGDQVKQRIQ*
Ga0127503_111950291	3300010154	Soil	LIEGQLLSQEQDFRAQGCARAEQETEEKKPVRDQIGDQVKQRIQ*
Ga0126378_102150923	3300010361	Tropical Forest Soil	LSQEQNLRAQGCARAEQETEEKKSVRDQIGDQIKQRIQ*
Ga0126378_116832702	3300010361	Tropical Forest Soil	QEQDLRAQGCARAEQETEEKKPVRYQIDDEVKQRIQ*
Ga0134066_101977431	3300010364	Grasslands Soil	LDLSLPIKGQLLSQEEDLHAQGCARAEKETEEKKAVRDQIGDQVKQRIQ*
Ga0126381_1001927241	3300010376	Tropical Forest Soil	EGQLLSQEQDLRAQGCARAEQETEEKKSVRDQIGDQVKQRI*
Ga0137364_100370861	3300012198	Vadose Zone Soil	SRLDLSLLIKGQLLSQEEDLHAQGCARAEKETEEKKAVRDQIGDQGKQRIQ*
Ga0137364_107665681	3300012198	Vadose Zone Soil	LPQKQDFRAEGCARAEQETEEKKPVRDQIGDQDKQRIQ*
Ga0137364_109536411	3300012198	Vadose Zone Soil	LDLSLLIEGQLLPQKQDFRAEGCARAEQETEEKKPVRDQIGDQDKQRI
Ga0137364_112915442	3300012198	Vadose Zone Soil	SRLDLSLPIKGQLLSQEEDLHAQGCARAEKETEEKKAVHDQIGDQVKQRIQ*
Ga0137364_113924781	3300012198	Vadose Zone Soil	LDLSLLIEGQLLSQKQDFRAEDCARAEKETEEKKPVGDQIGDQGKQRIQ*
Ga0137364_114581411	3300012198	Vadose Zone Soil	SLLIEGQLLSQKQDFRAEGCARAEQETEEKKPVRDQIGDQDKQRIQ*
Ga0137382_101250114	3300012200	Vadose Zone Soil	SRLDLSLLIKGQLLSQEEDLHAQGCARADKETEEKKAVRDQIGDQGQQRIQ*
Ga0137382_103806171	3300012200	Vadose Zone Soil	QEEDLHAQGCARAEKETEEKKAVRDQIGDQGKQRIQ*
Ga0137382_109352542	3300012200	Vadose Zone Soil	GETGGVVQSSWLDLSLLIEGQLLSQKQDFRAEGCARAEQETEEKKPVRDQIGDQDKQRMQ
Ga0137382_113349371	3300012200	Vadose Zone Soil	VVQSSWLDLSLLIEGQLLSQKQDFRAEGCARAEQETQEKKPVRDQIDDQDKKRIQ*
Ga0137363_115671972	3300012202	Vadose Zone Soil	DLSLLIEGQLLSQKQDFRAEGCARAEQETEEKKPFRDQIGDQDKQRIQ*
Ga0137399_108709771	3300012203	Vadose Zone Soil	LLSQKQDFRAEGCARAEQETEEKKPVRDQIGDQDKQKIQ*
Ga0137376_115678481	3300012208	Vadose Zone Soil	SLLIKGQLLSQEEDLHAQGCARADKETEEKKAVRDQIGDQVKQRIQ*
Ga0137379_106912782	3300012209	Vadose Zone Soil	LDLSLLIEGQLLSQKQDFRAEGCARAEKETEEKKPVRDQIGDQDKKRIQ*
Ga0137377_102968541	3300012211	Vadose Zone Soil	KQDFRAEGCARAEQETEEKKPVRDQIGDQDKQRIQ*
Ga0137377_115499342	3300012211	Vadose Zone Soil	IEGQLLSQEEDLHAQGCARAEKETEEKKAVRNQIGNQVEQRIQ*
Ga0137370_100794752	3300012285	Vadose Zone Soil	LIEGQLLSQKQDFRAEGCARAEQETEEKKPVRDQIGDPDKQRIQ*
Ga0137386_107649911	3300012351	Vadose Zone Soil	LDLSLLIEGQLLSQKQDFRAEGCARAEKETEEKKPVGDQIGDQDKKRIQ*
Ga0137398_100100857	3300012683	Vadose Zone Soil	MEGQLLPQKQDFRAEGCARAEQETEEKKPVRDQIGDQDKQRIQ*
Ga0137396_109946141	3300012918	Vadose Zone Soil	VVQSSRLDLPLLIEGQLLSQEEDLHAQGCARAEKETEEKKSVRDQIGDQDNQRIQ*
Ga0126369_116401542	3300012971	Tropical Forest Soil	SLLIEGQLLSQEQDLRAQGCARAEQETEEKKSVRDQIADQVKQRIQ*
Ga0134087_101679881	3300012977	Grasslands Soil	VQSSWLDLSLLIEGKLLSQKQDFRAEGCARAEQETEEKKPIRDQIGDQDKQRIQ*
Ga0182011_110196581	3300014496	Fen	LLIAGQLLSQEEDLHAQGCARAEQETEEKKPVRDQIDNQVKQRIQ*
Ga0137418_101116322	3300015241	Vadose Zone Soil	LDLSLLIEGQLLSQEEDLHAQGCARAEKETEEKKAVRDQIGDQVKQRIQ*
Ga0182036_100705141	3300016270	Soil	IEGQLLSQEQDLRAQGCARAEQETEEKKSVRDQIGDQVKQRIQ
Ga0182036_100785483	3300016270	Soil	EGQLLSQEQDLRAQGCARAEQETEEKKSVRDQIGDQVKQRMQ
Ga0182036_104081242	3300016270	Soil	VQSSRLGLSLLIEGQLLSQEQDLRAQGCARAEQETEEKKKKKSVRDQIGDQVKQKIQ
Ga0182041_106648862	3300016294	Soil	LLSQEQDLRAQGCARAEQETEEKKSVRDQIGDQVKQRIQ
Ga0182033_101505625	3300016319	Soil	EGQLLSQEQDLRAQGCARAEQETEEKKSVRDQIGDQVKQTIQ
Ga0182035_112668962	3300016341	Soil	QLLSQEQDLRAQGCARAEQETEEKKSVRDQIGDQVKQRMQ
Ga0182032_106577632	3300016357	Soil	IEGQLLSQEQDLRAQGCARAEQETEEKKSVRDQIGDQVKQRMQ
Ga0182034_110915763	3300016371	Soil	SQEQDLRAQGCARAEQETEEKKSVRDQIGDQVKQRIQ
Ga0182040_100300452	3300016387	Soil	LGLSLLIEGQLLSQEQDLRAQGCARAEQETEEKKKKKSVRDQIGDQVKQKIQ
Ga0182040_100781693	3300016387	Soil	LIEGQLLSQEQDLRAQGCARAEQETEEKKSVRDQIGDQVKQRIQ
Ga0193747_100108715	3300019885	Soil	GGVVQSSWLDLSLLIEGKLLSQKQDFRAEGCARAEQETEEKKAVRDQIGDQVKQRIQ
Ga0193729_10034424	3300019887	Soil	LDLSLLIEGKLLSQKQDFRAEGCARAEQETEEKKAVRDQIGDQVKQRIQ
Ga0193731_10003171	3300020001	Soil	LSQEEDLHAQGCARAEQETEEKKPVRDQIDDQVKQRIQ
Ga0193731_10007801	3300020001	Soil	QSSWLDLPLLIEGQLLSQEEDLHAQGCARAEQETEEKKPVRDQIDDQVKQRIQ
Ga0193735_10050357	3300020006	Soil	LLSQEEDLHAQGCARAEQETEEKKPVRDQIDDQVKQRIQ
Ga0210399_102460981	3300020581	Soil	LLIEGKLLSQEEDLHAQGYARAEQETEEKQPVHDQIGDQVKQRIQ
Ga0210399_113712811	3300020581	Soil	DLSLLIEGQLLSQEQDLRAQGCARAEQETEEKKYVPGQISDQAKQRIQ
Ga0210401_113196711	3300020583	Soil	ETGRVVQSSWLDLSLPIEGQLLSQKQDFRAEGCARAEQEKEEKKPVRDQIGDQDNQRIQ
Ga0210383_102096342	3300021407	Soil	VKEGRTQRTLCFSSRLDLPLLIEGQLFWQEQNLRAQGCARAEQETEEKKYVPGQISDQAKQRIQ
Ga0210402_109611392	3300021478	Soil	DERETGGVVQSSRLDLSLLIEGQLLSQEQNLRAQGCARAEQKTEEKKYVRDQIGDQVKQRFQ
Ga0210409_102302591	3300021559	Soil	EQDFRAEGRARAEQQTEEKKSICDQIGDQLKQRIQ
Ga0179589_101232761	3300024288	Vadose Zone Soil	LLSQEEDFRAEGCARAEKETEEKKAVRDQIGDQVKQRVQ
Ga0208188_10532702	3300025507	Peatland	NCIIQSSRLNLVLLIEGQLLSQEQYFCTQGGMRAERETQETKSVCDQIGDKIKE
Ga0209158_10945731	3300026333	Soil	EGQLLSQKQDFRAEGCARAEKETEEKKPVRDQIGDQDKQRIQ
Ga0209418_10363061	3300027371	Forest Soil	LDLPLLIEGQLLSQEEDLHAQGYARTEQETEEKKPVRDQIGDQVKQRIQ
Ga0209656_100077784	3300027812	Bog Forest Soil	LDLPLQIEGELLSQEQDFCAEGRARAEQEPEEKKPFCEQVGAQDKQRIQ
Ga0209656_104590711	3300027812	Bog Forest Soil	PESERETGGVVQSSWLGLSLLIEGQLLSQEQDFRAEGCARAEQETEEKKSVRDQIGDQVKQRIQ
Ga0209380_104432181	3300027889	Soil	MGGVVQSSWLDLSLLIEGQLLWQKQDFRAEGCARAEQETEEKKPVRDQIKAR
Ga0170834_1012206691	3300031057	Forest Soil	VRHRSSRLDLSLLIKGQLLSQEQDLRTQGCARAEQQKEEKKRVRYQIGDQGKQRI
Ga0170834_1052742401	3300031057	Forest Soil	EDERETGRVVQSSGLDLSLLIEGQLLSQEQDLRAQGCARAEQETEEKKYVPGQISDQVKQRIQ
Ga0318509_106951971	3300031768	Soil	LLIEGQLLSQEQDLRAQGCARAEQETEEKKSVRDQIGDQVEQRIQ
Ga0318546_105230652	3300031771	Soil	ECQLLSQEQNLRAQGCARAEQETEEKKSVRDQIGDQVKQRIQ
Ga0318547_100167521	3300031781	Soil	QSSRLGLSLLIEGQLLSQEQDLRAQGCARAEQETEEKKSVRDQIGDQVKQRIQ
Ga0307473_115449832	3300031820	Hardwood Forest Soil	LLSQEQDFRAQGCPRAEQETEEKKYVPGQISDQVKQRIPSALYESRH
Ga0310917_100622651	3300031833	Soil	IVGFRAQGCARAEQETEEKKSVHDQIGDQVKQRIQ
Ga0318517_101969971	3300031835	Soil	QEQNLRAQGCARAEQETEEKKSVGDQIGDQVKQRIH
Ga0306919_101908993	3300031879	Soil	QLLSQEQDLRAQGCARAEQETEEKKSVRDQIGDQVKQRIQ
Ga0306925_100736533	3300031890	Soil	LLIEGQLLSQEQDLRAQGCARAEQETEEKKSVRHQIGDQVKQRIQ
Ga0306925_100865775	3300031890	Soil	DTGGVVQSSRLGLSLLIEGQLLSQEQNLRAQGCARAEQETEEKKSVRDQIGDQVKQRIQ
Ga0306925_101919801	3300031890	Soil	ETDTGGVVQSSRLDLSFLIEGQLLSQEQDLRAQGCARAEQETEEKKSVRDQIGDQVKQRM
Ga0306925_102145341	3300031890	Soil	GQLLSQEQDLRAQGCARAEQETEEKKKKKSVRDQIGDQVKQKIQ
Ga0306925_108623192	3300031890	Soil	EDETDTGGVVQSSRLGLSLLIEGQLLSQEQNLRAQGCARAEQEMEEKKSVRDQLGDQVKQRIQ
Ga0306923_100719966	3300031910	Soil	LLIEGQLLSQEQDLRAQGCARAEQETEEKKSVRDQIGDQVKQRIQ
Ga0306923_118442741	3300031910	Soil	IEGQLLSQEQDLRAQGCARAEQETEEKKKKKSVRDQIGDQVKQKIQ
Ga0310912_100212651	3300031941	Soil	QEQDLRAQGCARAEQETEEKKSVRDQIGDQVKQRIQ
Ga0310912_100643273	3300031941	Soil	LIEGQLFSQEQNLRAQGCARAEQEMEEKKSVRDQIGDQVKQRIQ
Ga0310912_102794001	3300031941	Soil	EDETDTGGVVQSSRLGLSLLIEGQLLSQEQNLRAQGCARAEQETEEKKSLRDQIGDQVKQRIQ
Ga0310912_113248271	3300031941	Soil	QLLSQEQDLRAQGCARAEQETEEKKSVRDQIGDQVEQRIQ
Ga0310910_103484693	3300031946	Soil	IEGQLLSQEQDLRAQGCARAEQETEEKKSVRDQIGDQVKQRIH
Ga0310909_105132703	3300031947	Soil	GGVVQSSRLGLSLLIEGQLLSQEQDLRAQGCARAEQETEEKKSVRDQIGDQVKQRIQ
Ga0310909_105235782	3300031947	Soil	GGVVQSSRLGLSLLIEGQLLSQEQDLRAQGCARAEQETEEKKKKKSVRDQIGDQVKQKIQ
Ga0310909_106254741	3300031947	Soil	SLLIEGQLLSQEQGLRAQGCALAEQETEEKKSVRDQIGDQVKQRIQ
Ga0306926_101988922	3300031954	Soil	QDLRAQGCARAEQETEEKKKKKSVRDQIGDQVKQKIQ
Ga0306926_103104694	3300031954	Soil	LIEGQLLSQEQDLRAQGCARAEQETEEKKSVRDQIGDQVKQRIH
Ga0306926_110217751	3300031954	Soil	EQNLRAQGCARAEQETEEKKSVRDQIGDQVKQRIQ
Ga0310911_104175731	3300032035	Soil	GLSLLIECQLLSQEQNLRAQGCARAEQETEEKKSVRDQIGDQVKQRIQ
Ga0306924_103607981	3300032076	Soil	GQLFSQEQNLRAQGCARAEQEMEEKKSVRDQIGDQVKQRIQ
Ga0306920_1003147655	3300032261	Soil	LLSQEQDLRAQGCARAEQETEEKKSVRDQIGDQVKQTIQ
Ga0306920_1011201161	3300032261	Soil	LIEGQLLSQEQDLRAQGCARAEQETEEKKSVRDQIVDQVKQRIQ
Ga0306920_1016928951	3300032261	Soil	RPEDETDTGGVVQSSRLDLSLLIEGQLLSQEQDLRAQGCVRAEQETEEKKPVRDQIGDQVKQRIQ
Ga0310914_100100531	3300033289	Soil	SRSIVSVGPVSPLESQLLSQEQDLRAQGCARAEQETEEKKSVRDQIGDQVKQRIQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097176

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences