Metagenome Family F097225

Basic Information
Family ID	F097225
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	46 residues
Representative Sequence	MDNVTFIEVDGVEHAIIDRGNGEFTSMLKSTYDEQQAANVINEL
Number of Associated Samples	79
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	96.77 %
% of genes near scaffold ends (potentially truncated)	5.77 %
% of genes from short scaffolds (< 2000 bps)	11.54 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Most Common Taxonomy
Group	Unclassified (72.115 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater (22.115 % of family members)
Environment Ontology (ENVO)	Unclassified (59.615 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (54.808 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.44% β-sheet: 26.39% Coil/Unstructured: 54.17%
Feature Viewer

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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF13539	Peptidase_M15_4	19.23
PF03406	Phage_fiber_2	5.77
PF05257	CHAP	4.81
PF02018	CBM_4_9	2.88
PF03354	TerL_ATPase	0.96
PF13692	Glyco_trans_1_4	0.96
PF01391	Collagen	0.96
PF13155	Toprim_2	0.96
PF13252	DUF4043	0.96
PF04586	Peptidase_S78	0.96
PF01844	HNH	0.96
PF13506	Glyco_transf_21	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3740	Phage head maturation protease	Mobilome: prophages, transposons [X]	0.96
COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	Mobilome: prophages, transposons [X]	0.96

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.12 %
All Organisms	root	All Organisms	27.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.12 %
Viruses	superkingdom	All Organisms → Viruses	26.92 %
cellular organisms	root	All Organisms → cellular organisms	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.12 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	24.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.12 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	24.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.12 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	24.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.12 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	24.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.12 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	24.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.12 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	24.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000756\|JGI12421J11937_10018115	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2624	Open in IMG/M
3300006639\|Ga0079301_1000119	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	39119	Open in IMG/M
3300008108\|Ga0114341_10092853	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1849	Open in IMG/M
3300008116\|Ga0114350_1000405	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	27495	Open in IMG/M
3300009082\|Ga0105099_10315754	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	918	Open in IMG/M
3300009161\|Ga0114966_10023867	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4590	Open in IMG/M
3300009175\|Ga0073936_10281637	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1094	Open in IMG/M
3300009419\|Ga0114982_1000877	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	15689	Open in IMG/M
3300010885\|Ga0133913_10841183	Not Available	2388	Open in IMG/M
3300011114\|Ga0151515_10672	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	14404	Open in IMG/M
3300019784\|Ga0181359_1192454	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	664	Open in IMG/M
3300020048\|Ga0207193_1025392	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7138	Open in IMG/M
3300020159\|Ga0211734_10935358	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1376	Open in IMG/M
3300020161\|Ga0211726_10340982	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	761	Open in IMG/M
3300022407\|Ga0181351_1002405	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6495	Open in IMG/M
3300025383\|Ga0208250_1044590	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	658	Open in IMG/M
3300027114\|Ga0208009_1000030	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	39098	Open in IMG/M
3300027710\|Ga0209599_10000937	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	15693	Open in IMG/M
3300027764\|Ga0209134_10012592	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2590	Open in IMG/M
3300027797\|Ga0209107_10014448	All Organisms → Viruses → Predicted Viral	4488	Open in IMG/M
3300027808\|Ga0209354_10167722	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	894	Open in IMG/M
3300028025\|Ga0247723_1012106	All Organisms → Viruses → Predicted Viral	3262	Open in IMG/M
3300028025\|Ga0247723_1063784	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1011	Open in IMG/M
3300028025\|Ga0247723_1150151	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	546	Open in IMG/M
3300031952\|Ga0315294_10125570	Not Available	2631	Open in IMG/M
3300031999\|Ga0315274_10155178	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2899	Open in IMG/M
3300034050\|Ga0335023_0009370	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5735	Open in IMG/M
3300034061\|Ga0334987_0561498	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	682	Open in IMG/M
3300034062\|Ga0334995_0065156	All Organisms → Viruses → Predicted Viral	2894	Open in IMG/M
3300034106\|Ga0335036_0183628	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1463	Open in IMG/M
3300034107\|Ga0335037_0008168	All Organisms → cellular organisms → Bacteria	5570	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	91.35%
Terrestrial	Environmental → Terrestrial	8.65%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	87.50%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	8.65%
Marine	Environmental → Aquatic → Marine	3.85%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	59.62%
Lentic	Environmental → Aquatic → Freshwater → Lentic	26.92%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	8.65%
Coastal	Environmental → Aquatic → Marine → Coastal	1.92%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.92%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	44.23%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	20.19%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	15.38%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	8.65%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	4.81%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	1.92%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	1.92%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	22.12%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	16.35%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	13.46%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	10.58%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	7.69%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	4.81%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	4.81%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	3.85%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	2.88%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	1.92%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	1.92%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	1.92%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.96%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.96%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	0.96%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	0.96%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.96%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental	Open in IMG/M
3300002091	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome	Environmental	Open in IMG/M
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003431	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN	Environmental	Open in IMG/M
3300005584	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF	Environmental	Open in IMG/M
3300006639	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11	Environmental	Open in IMG/M
3300006803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA	Environmental	Open in IMG/M
3300007544	Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3	Environmental	Open in IMG/M
3300007973	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um	Environmental	Open in IMG/M
3300008108	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA	Environmental	Open in IMG/M
3300008110	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA	Environmental	Open in IMG/M
3300008116	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA	Environmental	Open in IMG/M
3300009056	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3	Environmental	Open in IMG/M
3300009082	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009152	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG	Environmental	Open in IMG/M
3300009158	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG	Environmental	Open in IMG/M
3300009161	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG	Environmental	Open in IMG/M
3300009175	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG	Environmental	Open in IMG/M
3300009183	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG	Environmental	Open in IMG/M
3300009184	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG	Environmental	Open in IMG/M
3300009419	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT	Environmental	Open in IMG/M
3300010885	northern Canada Lakes Co-assembly	Environmental	Open in IMG/M
3300011114	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb	Environmental	Open in IMG/M
3300012006	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B	Environmental	Open in IMG/M
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental	Open in IMG/M
3300013005	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG	Environmental	Open in IMG/M
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental	Open in IMG/M
3300017701	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N	Environmental	Open in IMG/M
3300017716	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D	Environmental	Open in IMG/M
3300017723	Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N	Environmental	Open in IMG/M
3300017736	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N	Environmental	Open in IMG/M
3300017761	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017774	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental	Open in IMG/M
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental	Open in IMG/M
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental	Open in IMG/M
3300020159	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1	Environmental	Open in IMG/M
3300020161	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1	Environmental	Open in IMG/M
3300020172	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1	Environmental	Open in IMG/M
3300020716	Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion	Environmental	Open in IMG/M
3300022407	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D	Environmental	Open in IMG/M
3300023174	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505	Environmental	Open in IMG/M
3300023184	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503	Environmental	Open in IMG/M
3300025383	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes)	Environmental	Open in IMG/M
3300027114	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)	Environmental	Open in IMG/M
3300027710	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)	Environmental	Open in IMG/M
3300027754	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027764	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)	Environmental	Open in IMG/M
3300027769	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)	Environmental	Open in IMG/M
3300027793	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)	Environmental	Open in IMG/M
3300027797	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)	Environmental	Open in IMG/M
3300027808	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)	Environmental	Open in IMG/M
3300027969	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027973	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300028025	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC	Environmental	Open in IMG/M
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental	Open in IMG/M
3300031746	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20	Environmental	Open in IMG/M
3300031772	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20	Environmental	Open in IMG/M
3300031885	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36	Environmental	Open in IMG/M
3300031952	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40	Environmental	Open in IMG/M
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental	Open in IMG/M
3300032046	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40	Environmental	Open in IMG/M
3300032118	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15	Environmental	Open in IMG/M
3300032342	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0	Environmental	Open in IMG/M
3300033994	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046	Environmental	Open in IMG/M
3300034012	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027	Environmental	Open in IMG/M
3300034050	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095	Environmental	Open in IMG/M
3300034061	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028	Environmental	Open in IMG/M
3300034062	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045	Environmental	Open in IMG/M
3300034066	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087	Environmental	Open in IMG/M
3300034071	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110	Environmental	Open in IMG/M
3300034092	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069	Environmental	Open in IMG/M
3300034101	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107	Environmental	Open in IMG/M
3300034106	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131	Environmental	Open in IMG/M
3300034107	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133	Environmental	Open in IMG/M
3300034118	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165	Environmental	Open in IMG/M
3300034200	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190	Environmental	Open in IMG/M
3300034283	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12421J11937_100181152	3300000756	Freshwater And Sediment	MDNVKFIDMTDVFTGDVITHAIIDRGNGEFTSMLKSTYDEQQAQQLGGN*
JGI12421J11937_100375863	3300000756	Freshwater And Sediment	MDNVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPSLPE*
JGI12421J11937_100710211	3300000756	Freshwater And Sediment	MDNVKFIKIIGSDGIEVEHAIIDRGNGEFTSMLKSTYDEQQASLRLVT
JGI24028J26656_10028106	3300002091	Lentic	MDKVTFTKDTDGVEYATIDRGNNEFTSMLKSTYDQQQAANAK*
B570J29032_1087960621	3300002408	Freshwater	MENITYITDEQGVEHVVIDRGNGEYTSMLKFTYDEQQAALNGNKL*
B570J40625_1008982031	3300002835	Freshwater	MDKVTFIEDDKSVSHAIIDRGNGEFTSMLKSTYDEQQASVSD*
JGI25913J50563_10219722	3300003431	Freshwater Lake	MDTVTFIEVEELGGVVEHAIIDRGNGEFTSMTKAHYEALQDQAGE*
Ga0049082_102845431	3300005584	Freshwater Lentic	CKMDNVNFNTDERGIEYATIDHGNGAFTSMLKSTYDEQQAEQSTPSLPA*
Ga0079301_100011924	3300006639	Deep Subsurface	MDNVTFIEIDGLEHAIIDHGNEQFTSMLKSTYDALLEEQANDQSL*
Ga0075467_103522412	3300006803	Aqueous	MDNVTFITVDEVEHAIIDRGNGEYTSMPKATYDDMQAALSTPNV*
Ga0102861_10203163	3300007544	Estuarine	MDKVTFIEITDPLTKNVTEYAIIDHGNEKFSSMLKSTYDELKAND*
Ga0105746_10146442	3300007973	Estuary Water	MDKVTFIEITDPLTKNVTEYAIIDHGDEKFSSMLKSTYDELKAND*
Ga0114341_100928534	3300008108	Freshwater, Plankton	MDNVDFVTDEKGIEHAIIDRGNGEYTSMLKSTYDEQQAALDNGNLL*
Ga0114343_10570323	3300008110	Freshwater, Plankton	MDNVSFITVTNQLTNEVVEHAIIDRGNGEFTSMTKATYDAQQAKVGN*
Ga0114350_100040523	3300008116	Freshwater, Plankton	MENVTFIEIETLGGVETHAIIDRGNGEFTSMLKSTYDEMQARQLGGN*
Ga0102860_12144572	3300009056	Estuarine	MKMDNVTYVTIDEVEHAIIDRGNGEFTSMLKSTYDEQQAALSTPSV*
Ga0105099_103157542	3300009082	Freshwater Sediment	MENVTFINVENLDGIIEHAIIDHGNGQYTSMLKSVYDEQQAAALNAHKL*
Ga0114980_106403962	3300009152	Freshwater Lake	MDNVTFVTDKDGVEHAIIDRGNGEFTSMLKSTYDEQQAALSTPIVTSDE*
Ga0114977_100545563	3300009158	Freshwater Lake	MDKVTYITVNDVEHAIIDRGNEEFTSMLKSTYDEQQAALSTPSV*
Ga0114966_1002386710	3300009161	Freshwater Lake	MKNVTYLIDKDGNEHAIIDHGNGEFTSMLKSTYDEQQAALSRPMVTDAPES*
Ga0073936_102816371	3300009175	Freshwater Lake Hypolimnion	MDNVTFIKVTGTDGVEVEHAIIDRGNGEFTSMLKSTYDAQQAT
Ga0114974_100774134	3300009183	Freshwater Lake	MDNVKFIKVIDSIGAEVEHAIIDRGNGEFTSMLKSTYDEQQAQQLGGN*
Ga0114974_101477622	3300009183	Freshwater Lake	MDNVTFIEVEGVEHAIIDRGNGEFTSMTKAHYEELQVAPTP*
Ga0114976_103334202	3300009184	Freshwater Lake	MSDVTFFTDELGNEHAIIDRGNGEYTSMLKSTYDEQQAQQLGGN*
Ga0114982_100087716	3300009419	Deep Subsurface	MDNVTFIEVEGVEHAIIDRGNGEFTSMTKAHYEAQLANEAETI*
Ga0133913_104657343	3300010885	Freshwater Lake	MDNVTFIKVAGIDGTEVEHAIIDRGDGEFTSMTKEHYDKQLEESSN*
Ga0133913_108411833	3300010885	Freshwater Lake	MDNVTYVTDTNGVEHAIIDHGNGEYTSMLKSTYDEQQAALSTP
Ga0151515_1067213	3300011114	Freshwater	MEKVQFVKITNPLNDEVTEHAIIDRGNGEFTSMLKSIYDEQQKAMTIDEPAAKSK*
Ga0119955_10285893	3300012006	Freshwater	MRMDNVIFVIVDEVEHAIIDRGNGEYTSMPKSFYESQQLALSTPIINAD*
Ga0164293_100995492	3300013004	Freshwater	MDKVTFIEVETLGGVQTHAIIDRGNGEFTSMLKSTYDEQQAALNDFNEL*
Ga0164292_101476212	3300013005	Freshwater	MDKVTFIEVETLGGVQTHAIIDRGNGEFTSMTKATYDEQQAALNDFNEL*
Ga0177922_108061002	3300013372	Freshwater	MGNVTFLTRTNIDGTEVEHAIIDRGNGEFTSMLKSTYDA
Ga0181364_10708341	3300017701	Freshwater Lake	MDNVNFNTDERGIEYATIDHGNGAFTSMLKSTYDEQQAALSTPSLPA
Ga0181350_10876782	3300017716	Freshwater Lake	MTMDNVTFVFDSNGTEHAIIDHGNGEYTSMTKSFYDAQQAALSTPIISGDE
Ga0181362_11253781	3300017723	Freshwater Lake	MTMDNVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPSLPA
Ga0181365_10223032	3300017736	Freshwater Lake	MDNVTFVFDSNGTEHAIIDHGNGEYTSMTKSFYDAQQAALSTPIISGDE
Ga0181365_10728351	3300017736	Freshwater Lake	MDNVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPSLPA
Ga0181356_12241552	3300017761	Freshwater Lake	MENVTYFTDSLGVEHAIIDRGNGEFTSMLKSTYEAMQANYLTP
Ga0181358_10262741	3300017774	Freshwater Lake	MENVTFITITNSEDLEIEHAIIDRGNGEYTSMLKSTYDA
Ga0181358_10672591	3300017774	Freshwater Lake	MDNVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPS
Ga0181355_12938512	3300017785	Freshwater Lake	MDNVTVVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPSLPE
Ga0181359_10735252	3300019784	Freshwater Lake	MDNVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPSLPE
Ga0181359_11924541	3300019784	Freshwater Lake	MDNVSFIKVTQPMTGEILEHAIIDRGNGEFTSMLKSTYEAH
Ga0207193_10253924	3300020048	Freshwater Lake Sediment	MDNVTFIDDANGVKHVIIDRGNGEFTSMTKERYDELEAAKENANKL
Ga0207193_11103535	3300020048	Freshwater Lake Sediment	MSNVNFIKSEVDETEYAIIDRGNGEFTSMLKSTYDAM
Ga0211734_106023752	3300020159	Freshwater	MDNVTFITDFQGLEHAIIDRGNGEFTSMLKSTYDEMQANADKL
Ga0211734_109353582	3300020159	Freshwater	MNNVTFIKITGMDGVDVEHAIIDRGNGEFTSMLKSTYDEQQAQQLGGN
Ga0211726_103409822	3300020161	Freshwater	MDNVTFIEMTDAFGNKSTHAIIDRGNGEYTSMLKSTYDEQLAAQSANKL
Ga0211729_104120982	3300020172	Freshwater	MENVEFIFIDEVEHAIIDRGNGEYTSMLKSTYDEQQAALSTPIVSSDE
Ga0211729_113645342	3300020172	Freshwater	MDNVTFIEITDPLTNEVVEHAVIDHGNDKFTSMLKSTYDEQQAAE
Ga0214207_10406211	3300020716	Freshwater	MDKVSFIEVEGVEHAIIDRGNGEFTSMPKANYDAQQAS
Ga0181351_10024056	3300022407	Freshwater Lake	MDKVIFVEVDAAGVIQTHAIIDRGNGEFTSMLKSTYDAQQAALADE
Ga0214921_101890952	3300023174	Freshwater	MNNVTFIEIANPMTEEVVEHAIIDRGNGEFTSMTKAHYEELQAAQAQTATI
Ga0214921_102163022	3300023174	Freshwater	VDNVTFIQTTNPMTEEVVEHAIIDRGNGEFTSMTKEHYEELQAAQAQTATI
Ga0214919_100456252	3300023184	Freshwater	MDNVIFVIVDEVEHAIIDRGNGEYTSMPKSFYESQQLALSTPIINAD
Ga0214919_101517642	3300023184	Freshwater	MDNVTFIEVESMGQMITHAIIDRGNGEYTSMLKSTYDEQQKANDSKS
Ga0208250_10445901	3300025383	Freshwater	MDNVTFIDVTNENGDITQNVIIDRGNGNFTSMLKSTYDAQQSAST
Ga0208009_100003053	3300027114	Deep Subsurface	MDNVTFIEIDGLEHAIIDHGNEQFTSMLKSTYDALLEEQANDQSL
Ga0209599_1000093711	3300027710	Deep Subsurface	MDNVTFIEVEGVEHAIIDRGNGEFTSMTKAHYEAQLANEAETI
Ga0209596_10416614	3300027754	Freshwater Lake	MKNVTYLIDKDGNEHAIIDHGNGEFTSMLKSTYDEQQAALSRPMVTDAPES
Ga0209134_100125925	3300027764	Freshwater Lake	MDTVTFIEVEELGGVVEHAIIDRGNGEFTSMTKAHYEALQDQAGE
Ga0209770_103495331	3300027769	Freshwater Lake	MDNVTFIEVKDFMTGKIVEHAIIDRGNGEYTSMIKSTYDE
Ga0209972_102556671	3300027793	Freshwater Lake	MDNVTFIKNTDPITGEVIEHAIIDRGNGEFTSMLKSTY
Ga0209107_100144482	3300027797	Freshwater And Sediment	MDNVKFIDMTDVFTGDVITHAIIDRGNGEFTSMLKSTYDEQQAQQLGGN
Ga0209107_101828882	3300027797	Freshwater And Sediment	MENVTFIEVETLEGTETHAVIDRGNGEFSSMPKSVYDAQQEAIKP
Ga0209354_101677221	3300027808	Freshwater Lake	MDKVTFVTDEQGVEHAIIDRGNEEFTSMTKAHYDAMQAEQSTPSV
Ga0209191_12516132	3300027969	Freshwater Lake	MNNVTFIEVESHGVVETHAIIDRGNGEYTSMPKSVYDEQQA
Ga0209298_101013752	3300027973	Freshwater Lake	MDNVTFVTDKDGVEHAIIDRGNGEFTSMLKSTYDEQQAALSTPIVTSDE
Ga0247723_10121064	3300028025	Deep Subsurface Sediment	MNNVIFITDNDGFEHAIIDRGNGEFTSMLKSTYDAQLEEQANDQSL
Ga0247723_10327103	3300028025	Deep Subsurface Sediment	MDNVTFIKRIGIDSTEIEHAIIDRGNGEFTSMLKSTYDKQQAQTNVN
Ga0247723_10557692	3300028025	Deep Subsurface Sediment	MDKVTFIDVEAFGEVETHAIIDHGNGEYTSMSKSIYDQLAANEAAPK
Ga0247723_10637842	3300028025	Deep Subsurface Sediment	MSNVTFIEIETMSGKETHAIIDRGNGEFTSMLKSTYDEQQAKQLGGN
Ga0247723_11501512	3300028025	Deep Subsurface Sediment	MNNVTFITDEQGVEHAIIDRGNGEFTSMTKAHYEAQLANEAETK
Ga0315291_104784622	3300031707	Sediment	MDKVTFIEVETLGGVETHAIIDRGNGEFTSMSKATYDEQQAANELNEL
Ga0315291_106190902	3300031707	Sediment	MDKVTFIEVNDVEYAIIDRGNGQFTSMTKTTYDEQQAADELNKL
Ga0315291_106360332	3300031707	Sediment	MEKIKISKFTDLDGIEYEQVVIDRGNGEFTSMLKSTYDEQQAANVINEL
Ga0315293_106884272	3300031746	Sediment	MDKVTFIKVTDPLTNEEIEHAIIDRGNGEFTSMLKSTYDEQQAANVINEL
Ga0315288_111402421	3300031772	Sediment	MDNVTFIEVDGVEHAIIDRGNGEFTSMLKSTYDEQQAANVINEL
Ga0315288_116641982	3300031772	Sediment	MDKVTFIEVETLGGVETHAIIDRGNNEFTSMSKATYDEQQAANELNEL
Ga0315285_108319141	3300031885	Sediment	MDKVMFIKVTDPLTNEEIEHAIIDRGNGEFTSMLKSTYDEQQAANVINEL
Ga0315294_101255701	3300031952	Sediment	MDKVTFIEVNDVEYAIIDRGNGQFTSMTKATYDEQQAADELNKL
Ga0315294_108762393	3300031952	Sediment	MDNVTFIEVNDVEYAIIDRGNGQFTSMTKATYDEQQAADELNKL
Ga0315274_101551783	3300031999	Sediment	MKMDKVTFIEVETLGGVETHAIIDRGNGEFTSMSKATYDEQQAANELNEL
Ga0315274_120371552	3300031999	Sediment	MTMDNVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYDEQQ
Ga0315289_113210432	3300032046	Sediment	MDKVTFITDRLGDEHAIIDRGNGEFTSMLKSTYDEQQAKALNGD
Ga0315277_101387583	3300032118	Sediment	MDNVTFIEVDGVEHAIIDRGNGEFTSMMKSTYDEQQAANVINEL
Ga0315286_101956455	3300032342	Sediment	MDNVTFIEVDGVEHAIIDRGNGEFTSMLKSTYDEQQAANEANEL
Ga0334996_0257422_401_523	3300033994	Freshwater	MDNVTFIEIDGETHAIIDRGNGEFTSMLKSTYDAMQVDGD
Ga0334986_0404745_109_264	3300034012	Freshwater	MTMDKVTFVEVETLGGVETHAIIDRGNGEFTSMSKATYEAQLAANEAINEL
Ga0335023_0009370_788_943	3300034050	Freshwater	MDNVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPMVTDAPKS
Ga0334987_0561498_494_640	3300034061	Freshwater	MDNVSFISMTNLGGVEVEHAIIDRGNGEYTSMLKSTYDEQQAQQLGGN
Ga0334995_0065156_2_115	3300034062	Freshwater	DEQGVEHVVIDRGNGEYTSMLKFTYDEQQAALNGNKL
Ga0335019_0046825_2156_2302	3300034066	Freshwater	MDNVTIVFNEVMGELIETVLIDKGNGEFTSMLKSTYDEQQANTVTLEA
Ga0335019_0253362_198_344	3300034066	Freshwater	MDNVTFIEIETLSGVQIHAIIDRGNGEFTSMLKSTYDEQQANTVTLEA
Ga0335028_0085623_974_1123	3300034071	Freshwater	MDKVTFIELENLNGKWEHAIIDRGNGEFTSMLKSTYDAQQEAIANDQSL
Ga0335010_0219061_656_793	3300034092	Freshwater	MENITYITDEQGVEHVVIDRGNGEYTSMLKFTYDEQQAALNGNKL
Ga0335010_0455489_1_117	3300034092	Freshwater	TFIEDDKSVSHAIIDRGNGEFTSMLKSTYDEQQASVSD
Ga0335010_0675900_210_347	3300034092	Freshwater	MDKVSFITVDEVEHAIIDRGNGEFTSMTKAHYEELEAAKANASEL
Ga0335027_0118945_1312_1461	3300034101	Freshwater	MENVTFIEVETLNGVETHAIIDRGNGEFTSMPKATYDEQQAAILNAPKL
Ga0335036_0183628_589_717	3300034106	Freshwater	MDKVTFIEDDKSVSHAIIDRGNGEFTSMLKSTYDEQQASVSN
Ga0335037_0008168_4302_4454	3300034107	Freshwater	MENVTFVTIDEVEHAIIDRGNGEFTSMLRSTYETQQATLSTPMVTDAPKS
Ga0335053_0444347_149_283	3300034118	Freshwater	MDKVTFIEDDKSVSHAIIDRGNGEFTSMLKSTYDEQQASVSDKL
Ga0335065_0670748_60_215	3300034200	Freshwater	MDKVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPMVTDAPKS
Ga0335007_0220434_781_906	3300034283	Freshwater	MNVTFIKIEGVEHAIIDRGNGEFTSMLKSTYDAMQTEVTND

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F097225

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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