Metagenome / Metatranscriptome Family F097239

Basic Information
Family ID	F097239
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	48 residues
Representative Sequence	MDVRLESFLRTLGVFLSVFFTIRWGAKSPINDELWMTLTAIAAVIAGFRIP
Number of Associated Samples	86
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	71.43 %
% of genes near scaffold ends (potentially truncated)	0.96 %
% of genes from short scaffolds (< 2000 bps)	3.85 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (96.154 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (16.346 % of family members)
Environment Ontology (ENVO)	Unclassified (58.654 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (79.808 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.78% β-sheet: 0.00% Coil/Unstructured: 39.22%
Feature Viewer

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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00090	TSP_1	6.73
PF00929	RNase_T	1.92
PF14295	PAN_4	1.92
PF00024	PAN_1	1.92
PF12705	PDDEXK_1	1.92
PF03104	DNA_pol_B_exo1	0.96
PF06941	NT5C	0.96
PF08125	Mannitol_dh_C	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0246	Mannitol-1-phosphate/altronate dehydrogenases	Carbohydrate transport and metabolism [G]	0.96
COG0417	DNA polymerase B elongation subunit	Replication, recombination and repair [L]	0.96
COG4502	5'(3')-deoxyribonucleotidase	Nucleotide transport and metabolism [F]	0.96

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.15 %
All Organisms	root	All Organisms	3.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.15 %
Viruses	superkingdom	All Organisms → Viruses	3.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.15 %
Varidnaviria	clade	All Organisms → Viruses → Varidnaviria	2.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.15 %
Bamfordvirae	kingdom	All Organisms → Viruses → Varidnaviria → Bamfordvirae	2.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.15 %
Nucleocytoviricota	phylum	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota	2.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.15 %
Megaviricetes	class	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes	2.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.15 %
Algavirales	order	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales	2.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.15 %
Phycodnaviridae	family	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae	2.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.15 %
Prasinovirus	genus	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus	1.92 %

Scaffold	Taxonomy	Length	IMG/M Link
3300007543\|Ga0102853_1001138	All Organisms → Viruses	4111	Open in IMG/M
3300007647\|Ga0102855_1037675	Not Available	1327	Open in IMG/M
3300017818\|Ga0181565_10165053	Not Available	1539	Open in IMG/M
3300020175\|Ga0206124_10047006	Not Available	1915	Open in IMG/M
3300021425\|Ga0213866_10025053	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae	3510	Open in IMG/M
3300024348\|Ga0244776_10001681	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus	23215	Open in IMG/M
3300032277\|Ga0316202_10050445	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus	1954	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	82.69%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	13.46%
Sediment	Environmental → Aquatic → Sediment	3.85%

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	19.23%
Oceanic	Environmental → Aquatic → Marine → Oceanic	17.31%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	13.46%
Coastal	Environmental → Aquatic → Marine → Coastal	12.50%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	12.50%
Pelagic	Environmental → Aquatic → Marine → Pelagic	9.62%
Unclassified	Environmental → Aquatic → Marine → Unclassified	7.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.85%
Inlet	Environmental → Aquatic → Marine → Inlet	1.92%
Strait	Environmental → Aquatic → Marine → Strait	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	16.35%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	13.46%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	12.50%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	11.54%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	11.54%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	9.62%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	7.69%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	6.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	1.92%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	0.96%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.96%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.96%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	16.35%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	12.50%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	11.54%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	7.69%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	7.69%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	6.73%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	5.77%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	4.81%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	2.88%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	2.88%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	2.88%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	2.88%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	1.92%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	1.92%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	1.92%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	1.92%
Marine Methane Seep Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment	1.92%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	0.96%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	0.96%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.96%
Microbial Mat	Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat	0.96%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	0.96%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.96%

Visualization

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000265	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10	Environmental	Open in IMG/M
3300001346	Pelagic Microbial community sample from North Sea - COGITO 998_met_01	Environmental	Open in IMG/M
3300001347	Pelagic Microbial community sample from North Sea - COGITO 998_met_06	Environmental	Open in IMG/M
3300001349	Pelagic Microbial community sample from North Sea - COGITO 998_met_10	Environmental	Open in IMG/M
3300001354	Pelagic Microbial community sample from North Sea - COGITO 998_met_05	Environmental	Open in IMG/M
3300001355	Pelagic Microbial community sample from North Sea - COGITO 998_met_08	Environmental	Open in IMG/M
3300001941	Marine microbial communities from Browns Bank, Gulf of Maine - GS003	Environmental	Open in IMG/M
3300003216	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA	Environmental	Open in IMG/M
3300003409	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA	Environmental	Open in IMG/M
3300003427	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA	Environmental	Open in IMG/M
3300003620	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA	Environmental	Open in IMG/M
3300003908	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_DNA	Environmental	Open in IMG/M
3300004097	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG	Environmental	Open in IMG/M
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental	Open in IMG/M
3300005912	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKD	Environmental	Open in IMG/M
3300005914	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKJ	Environmental	Open in IMG/M
3300005931	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK9	Environmental	Open in IMG/M
3300006026	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA	Environmental	Open in IMG/M
3300006027	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA	Environmental	Open in IMG/M
3300006637	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA	Environmental	Open in IMG/M
3300006793	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG	Environmental	Open in IMG/M
3300007236	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA	Environmental	Open in IMG/M
3300007543	Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3	Environmental	Open in IMG/M
3300007647	Estuarine microbial communities from the Columbia River estuary - metaG 1370B-02	Environmental	Open in IMG/M
3300007725	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_H2O_MG	Environmental	Open in IMG/M
3300007778	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MG	Environmental	Open in IMG/M
3300007953	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373A_3um	Environmental	Open in IMG/M
3300007956	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459A_0.2um	Environmental	Open in IMG/M
3300009000	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG	Environmental	Open in IMG/M
3300009001	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG	Environmental	Open in IMG/M
3300009058	Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02	Environmental	Open in IMG/M
3300009077	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328	Environmental	Open in IMG/M
3300009124	Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf	Environmental	Open in IMG/M
3300009172	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154	Environmental	Open in IMG/M
3300009420	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152	Environmental	Open in IMG/M
3300009437	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414	Environmental	Open in IMG/M
3300009441	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome	Environmental	Open in IMG/M
3300009445	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331	Environmental	Open in IMG/M
3300009449	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426	Environmental	Open in IMG/M
3300009507	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607	Environmental	Open in IMG/M
3300009512	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88	Environmental	Open in IMG/M
3300009526	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90	Environmental	Open in IMG/M
3300009705	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128	Environmental	Open in IMG/M
3300010389	Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf	Environmental	Open in IMG/M
3300017759	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28	Environmental	Open in IMG/M
3300017762	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18	Environmental	Open in IMG/M
3300017818	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300020175	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2	Environmental	Open in IMG/M
3300021305	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R868 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021347	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266	Environmental	Open in IMG/M
3300021365	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1	Environmental	Open in IMG/M
3300021371	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497	Environmental	Open in IMG/M
3300021425	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284	Environmental	Open in IMG/M
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300021960	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D	Environmental	Open in IMG/M
3300021964	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D	Environmental	Open in IMG/M
3300022821	Saline water microbial communities from Ace Lake, Antarctica - #801	Environmental	Open in IMG/M
3300022837	Saline water microbial communities from Ace Lake, Antarctica - #1699	Environmental	Open in IMG/M
3300023229	Saline water microbial communities from Ace Lake, Antarctica - #551	Environmental	Open in IMG/M
3300024255 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG	Environmental	Open in IMG/M
3300024348	0.2um to 3um size fraction coassembly	Environmental	Open in IMG/M
3300025608	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)	Environmental	Open in IMG/M
3300025630	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025636	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA (SPAdes)	Environmental	Open in IMG/M
3300025666	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426 (SPAdes)	Environmental	Open in IMG/M
3300025695	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)	Environmental	Open in IMG/M
3300025803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025822	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414 (SPAdes)	Environmental	Open in IMG/M
3300025870	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)	Environmental	Open in IMG/M
3300025876	Pelagic Microbial community sample from North Sea - COGITO 998_met_06 (SPAdes)	Environmental	Open in IMG/M
3300025890	Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)	Environmental	Open in IMG/M
3300025894	Pelagic Microbial community sample from North Sea - COGITO 998_met_09 (SPAdes)	Environmental	Open in IMG/M
3300025897	Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)	Environmental	Open in IMG/M
3300026130	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_H2O_MG (SPAdes)	Environmental	Open in IMG/M
3300026187	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes)	Environmental	Open in IMG/M
3300027206	Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02 (SPAdes)	Environmental	Open in IMG/M
3300027687	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)	Environmental	Open in IMG/M
3300027752	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)	Environmental	Open in IMG/M
3300027788	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)	Environmental	Open in IMG/M
3300027791	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes)	Environmental	Open in IMG/M
3300027801	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)	Environmental	Open in IMG/M
3300028196	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m	Environmental	Open in IMG/M
3300031675	Marine microbial communities from Western Arctic Ocean, Canada - CB21_SCM	Environmental	Open in IMG/M
3300032277	Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
LP_A_09_P04_10DRAFT_10039361	3300000265	Marine	MDIRLESFMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP*
JGI20151J14362_101029641	3300001346	Pelagic Marine	MRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAV
JGI20151J14362_101449771	3300001346	Pelagic Marine	VYNTKMDVRLESFMRSLGVFLTVFFTIRWGAKSPINDELWMTLTAIAA
JGI20156J14371_101037093	3300001347	Pelagic Marine	VYNTKMDVRLESFMRSLGVFLTVFFTIRWGAKSPINDELWMTLTA
JGI20160J14292_101084993	3300001349	Pelagic Marine	MRSLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAV
JGI20155J14468_102285591	3300001354	Pelagic Marine	MDVRLESFMRTLGGFLTVFFTIRWGAKSPINDELWMTLTAIAAV
JGI20155J14468_102291761	3300001354	Pelagic Marine	MDVRLESFMRSLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAV
JGI20158J14315_101532881	3300001355	Pelagic Marine	LGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP*
GOS2219_10056405	3300001941	Marine	MDVRLESFMRIVGLFLTVFFAIRWGAKSPVNDELIITLVAITAVIAGFRVP*
JGI26079J46598_10297463	3300003216	Marine	MDIRLEAMLRTISVFLSIFFTIRWSAKSPINDELWMTITAIAAVIAGFRIP*
JGI26088J50261_10278702	3300003409	Marine	MDIRLEAMLRTIGVFLSIFFTIRWSAKSPINDELWMTIVSITAVIAGFRIP*
JGI26084J50262_10537551	3300003427	Marine	MIGVFLSVFFTIRWGAKSPIQDELWMTVVAILAVIAGFRVK*
JGI26273J51734_100753952	3300003620	Marine	MDVRLESFMRSLGVFLTVFFTIRWGANSPINDELWMTLTAIAAVLAGFRVP*
JGI26273J51734_101166382	3300003620	Marine	MDVRLESFMRTLGVFLSVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP*
JGI26085J52751_10585762	3300003908	Marine	MDIRLESFLRTLSVFLSIFFTVRWGAKSPIQDELWMTVTAIVAVIAGFRVP*
Ga0055584_1008100762	3300004097	Pelagic Marine	MDVRLESFMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP*
Ga0078893_106100253	3300005837	Marine Surface Water	MDIRLEAMLRTIGVFLSIFFTIRWSAKSPINDELWMTITAISAVIAGFRIP*
Ga0075109_12299931	3300005912	Saline Lake	MDLRLESTLRTLGVFLAIFFTVRWGKESPINDELWMVVASISAVIAGFRVP*
Ga0075117_11048563	3300005914	Saline Lake	MDVRLESTLRVVSVFLAIFFTVRWGKESPINDELWITIASIFAVIAGFRIP*
Ga0075119_10393983	3300005931	Saline Lake	MDIRLESTLRVISVFLAIFFTVRWGRESPINDELWITVASILGVILGFRIP*
Ga0075478_100559842	3300006026	Aqueous	MDVRLESTLRTISVFLSVFFTIRWGAKSPIQDELWMTVVAILAVIAGFRIK*
Ga0075462_100286813	3300006027	Aqueous	MDIRLESFLRTLSVFLSIFFTVRWGAKSPIQDELWMTVTAIIAVIAGFRIP*
Ga0075461_101091521	3300006637	Aqueous	MDVRLESTLRTISVFLSVFFTIRWGAKSPIQDELWMTVVAILAVIAGFRKSDRMFK
Ga0098055_12055251	3300006793	Marine	MDIRLEAMLRTIGVFLSIFFTIRWSAKSPINDELWMTITAISAVIAGFRI
Ga0075463_100230713	3300007236	Aqueous	VFLSIFFTVRWGAKSPIQDELWMTVTAIIAVIAGFRIP*
Ga0102853_10011385	3300007543	Estuarine	MRSLGVFLSVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP*
Ga0102855_10376752	3300007647	Estuarine	RLESFMRSLGVFLSVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP*
Ga0102951_11900121	3300007725	Water	MDIRLESFLRTLGVFLTIFFTVRWGRDSPINDELWMVVASISAVIAGFRIP*
Ga0102954_10208201	3300007778	Water	MDVRLESTLRTIGVFLSVFFTIRWGAKSPIQDELWMTVVAILAVIAGFRVK*
Ga0105738_10742061	3300007953	Estuary Water	MDIRLESFMRSLGVFLSVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP*
Ga0105741_10411343	3300007956	Estuary Water	MRSLGVFLTVFFTIRWGANSPINDELWMTLTAIAAVLAGFR
Ga0102960_10371701	3300009000	Pond Water	MNITKMDVRLESTLRMIGVFLSVFFTIRWGAKSPIQDELWMTVVAILAVIAGFRIK*
Ga0102960_11198602	3300009000	Pond Water	MDVRLESALRTISVFLTVFFTIRWGAKSPIQDELLMTVVAIIAVIAGFRIP*
Ga0102960_13316512	3300009000	Pond Water	MDIRLEAMLRIISVFLSIFFTIRWSAKSPINDELWMTVVAISAVIAGFRIP*
Ga0102963_11208252	3300009001	Pond Water	MDVRLESFLRTLGVFLSVFFTIRWGAKSPINDELWMTVVAILAVIAGFRIK*
Ga0102854_10892251	3300009058	Estuarine	MRTLGLFLTVFFTIRWGAKSPINDELWMTLTAIAAV
Ga0102854_11408531	3300009058	Estuarine	MYITKMDVRLESFMRSLGVFLSVFFTIRWGAKSPINDELWMTLTAIA
Ga0115552_11851821	3300009077	Pelagic Marine	MRSLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAG
Ga0118687_100190493	3300009124	Sediment	MDVRLESFLRTLGVFLSVFFTIQWGRNSPIDDELWMTLTAIAAVIAGFRIP*
Ga0118687_103076222	3300009124	Sediment	MDIRLESFLRTLSVFLSIFFTVRWGAKSPIQDELWMTVT
Ga0114995_100272342	3300009172	Marine	MDIRLESTLRTLGAFLTIFFTVRWGRESPINDELWMVVTSIVAVILGFRVP*
Ga0114994_100708831	3300009420	Marine	MDVRLESTLRTLGVFLTIFFTVRWGKESPINDELWMVVASISAVIAGFRIP*
Ga0115556_11470103	3300009437	Pelagic Marine	MRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0115556_11473083	3300009437	Pelagic Marine	MRSLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0115007_108364232	3300009441	Marine	MDLRLESTLRTLGVFLTIFFTVRWGRESPINDELWMVVASISAVIAGFRVP*
Ga0115553_10240834	3300009445	Pelagic Marine	VYNTKMDVRLESFMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP*
Ga0115558_10123311	3300009449	Pelagic Marine	MRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP*
Ga0115572_101818361	3300009507	Pelagic Marine	MDVRLESFMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFR
Ga0115003_100456362	3300009512	Marine	MDLRLESTLRTLGVFLTIFFTVRWGKESPINDELWMVVASISAVIAGFRVP*
Ga0115003_101460501	3300009512	Marine	MDVRLESTLRTLGVFLTIFFTVRWGKESPINDELWMVVASISA
Ga0115004_103421831	3300009526	Marine	MDLRLESTLRTLGVFLTIFFTVRWGRESPINDELWMVVAS
Ga0115000_102621791	3300009705	Marine	MDIRLESTLKTIGVFLTIFFTVRWGRESPINDELWMVVTSIVAVILGFRVP*
Ga0115000_108727051	3300009705	Marine	FLTIFFTVRWGRESPINDELWMVVTSIVAVILGFRVP*
Ga0136549_100725843	3300010389	Marine Methane Seep Sediment	MDVRLESFLRTLGVFLSVFFTIQWGRDSPIDDELWMTLTAIAAVIAGFRIP*
Ga0136549_102934433	3300010389	Marine Methane Seep Sediment	MDVRLESFLRTLGVFLSVFFTIQWGRDSPINDELWMTLTAIAAV
Ga0181414_11844411	3300017759	Seawater	MDIRLESFLRTLSVFLSIFFTVRWGAKSPIQDELWMTVTAIVAVIAGFRVP
Ga0181422_10076995	3300017762	Seawater	MDIRLEAMLRTIGVFLSIFFTIRWSAKSPINDELWMTITAITAVIAGFRIP
Ga0181565_101650533	3300017818	Salt Marsh	MDVRLESFLRTLGVFLSVFFTIRWGAKSPINDELWMTLTAIAAVIAGFRIP
Ga0206124_100470063	3300020175	Seawater	MDVRLESFMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0210296_10232581	3300021305	Estuarine	MYNTKMDVRLESFMRTLGVFLSVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0213862_101655081	3300021347	Seawater	MDVRLESTLRTIGVFLTVFFTIRWGAKSPIQDELWMTVVAILAVIAGFRIK
Ga0206123_104713621	3300021365	Seawater	LESFMRTLGVFLTVFFTIRWGAKSPINDELWMTLTA
Ga0213863_1000014176	3300021371	Seawater	MDIRLEAMLRTIGVFLTIFFTIRWSAKSPINDELWMTVTAICAVIAGFRIP
Ga0213866_100250532	3300021425	Seawater	MDVRLESFLRTLGVFLSVFFTMRWGRDSPIQDELWMTLTAIAAVIAGLRVP
Ga0222717_100488311	3300021957	Estuarine Water	MDVRLESFLRTLGVFLSVFFTIQWGRDSPINDELWMTLTAIAAVIAGFRIP
Ga0222718_100714733	3300021958	Estuarine Water	MDIRLEAMLRIISVFLSIFFTIRWSAKSPINDELWMTVVAISAVIAGFRIP
Ga0222718_102523191	3300021958	Estuarine Water	MDIRLESFMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0222716_100594855	3300021959	Estuarine Water	MDVRLESFLRTLGVFLNVFFTIRWGAKSPINDELWMTLTAIAAVITGFRIP
Ga0222716_103338731	3300021959	Estuarine Water	MDVRLESFMRTLALFLTVFFTIRWGAKSPINDELMMTLTAIVAVIAAFRVP
Ga0222715_102301331	3300021960	Estuarine Water	MDVRLESFMRSLGVFLTVFFTIRWGANSPINDELWMTLTAIAAVLAGFRVP
Ga0222719_100582881	3300021964	Estuarine Water	MDVRLESFLRTLGVFLSVFFTIQWGRDSPINDEMWMTLTAIAAVIAGFRIP
Ga0222719_106113431	3300021964	Estuarine Water	MNITKMDVRLESTLRMIGVFLSVFFTIRWGAKSPIQDELWMTVVAILAVIAGFRIK
Ga0222673_10111982	3300022821	Saline Water	MDIRLESTLRVISVFLAIFFTVRWGRESPINDELWITVASILGVILGFRIP
Ga0222711_10150353	3300022837	Saline Water	MDVRLESTLRVVSVFLAIFFTVRWGKESPINDELWITIASIFAVIAGFRIP
Ga0222661_10033751	3300023229	Saline Water	MDVRLESFMRTLALFLTVFFTIRWGAKSPINDELWMTLTAITAVIAAFRIP
(restricted) Ga0233438_102511741	3300024255	Seawater	MDVRLESFMRTLGVFLSVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0244776_1000168132	3300024348	Estuarine	MRSLGVFLSVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0209654_10360261	3300025608	Marine	MDIRLEAMLRTIGVFLSIFFTIRWSAKSPINDELWMTIVSITAVIAGFRIP
Ga0208004_10172952	3300025630	Aqueous	MDIRLESFLRTLSVFLSIFFTVRWGAKSPIQDELWMTVTAIIAVIAGFRIP
Ga0209136_10466381	3300025636	Marine	MDIRLEAMLRTISVFLSIFFTIRWSAKSPINDELWMTITAIAAVIAGFRIP
Ga0209136_11691421	3300025636	Marine	FLRTLSVFLSIFFTVRWGAKSPIQDELWMTVTAIVAVIAGFRVP
Ga0209601_10075907	3300025666	Pelagic Marine	VYNTKMDVRLESFMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0209653_10998921	3300025695	Marine	MDVRLESTLRMIGVFLSVFFTIRWGAKSPIQDELWMTVVAILAVIAGFRVK
Ga0208425_10181793	3300025803	Aqueous	VFLSIFFTVRWGAKSPIQDELWMTVTAIIAVIAGFRIP
Ga0209714_10864173	3300025822	Pelagic Marine	MDVRLESFMRSLGVFLTVFFTIRWGAKSPINDELWMTLTAIAA
Ga0209666_10153685	3300025870	Marine	MRTLGVFLSVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0209223_103560251	3300025876	Pelagic Marine	VYNTKMDVRLESFMRSLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0209631_103428291	3300025890	Pelagic Marine	LGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0209631_104429482	3300025890	Pelagic Marine	MDVRLESFMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAA
Ga0209335_102664602	3300025894	Pelagic Marine	TKMDVRLESFMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0209425_104531632	3300025897	Pelagic Marine	FLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0209961_10679831	3300026130	Water	MDVRLESTLRTIGVFLSVFFTIRWGAKSPIQDELWMTVVAILAVIAGFRVK
Ga0209929_10989611	3300026187	Pond Water	KMDVRLESALRTISVFLTVFFTIRWGAKSPIQDELLMTVVAIIAVIAGFRIP
Ga0208023_10470113	3300027206	Estuarine	MDVRLESFMRTLGLFLTVFFTIRWGAKSPINDELIMTLTAISAVIA
Ga0209710_11406762	3300027687	Marine	MDIRLESTLRTLGAFLTIFFTVRWGRESPINDELWMVVTSIVAVILGFRVP
Ga0209192_100166042	3300027752	Marine	MDLRLESTLRTLGVFLTIFFTVRWGKESPINDELWMVVASISAVIAGFRVP
Ga0209711_103386912	3300027788	Marine	MDLRLESTLRTLGVFLTIFFTVRWGRESPINDELWMVVASISAVIAGFRVP
Ga0209830_104736121	3300027791	Marine	KMDLRLESTLRTLGVFLTIFFTVRWGRESPINDELWMVVASISAVIAGFRVP
Ga0209091_100685561	3300027801	Marine	MDVRLESTLRTLGVFLTIFFTVRWGKESPINDELWMVVASISAVIAGFRIP
Ga0209091_101657373	3300027801	Marine	MDIRLESTLKTIGVFLTIFFTVRWGRESPINDELWMVVTSIVAVILGFRVP
Ga0209091_102402902	3300027801	Marine	FLTIFFTVRWGRESPINDELWMVVTSIVAVILGFRVP
Ga0257114_11985761	3300028196	Marine	LESFMRTLGLFLTVFFTIRWGAKSPVNDELIMTLVAITAVIAGFRVP
Ga0302122_102225183	3300031675	Marine	MDVRLESTLRTLGVFLTIFFTVRWGKESPINDELWM
Ga0316202_100504453	3300032277	Microbial Mat	MYNTKMDVRLESFMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097239

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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