Metagenome Family F097309

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097309
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	47 residues
Representative Sequence	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPVKYIKKKNAE
Number of Associated Samples	89
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	66.35 %
% of genes near scaffold ends (potentially truncated)	50.00 %
% of genes from short scaffolds (< 2000 bps)	93.27 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (79.808 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine (25.000 % of family members)
Environment Ontology (ENVO)	Unclassified (77.885 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (94.231 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.91% β-sheet: 27.66% Coil/Unstructured: 40.43%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF07728	AAA_5	18.27
PF03819	MazG	0.96
PF01541	GIY-YIG	0.96

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.81 %
All Organisms	root	All Organisms	20.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.81 %
Viruses	superkingdom	All Organisms → Viruses	20.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	20.19 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2236876001\|none_p130372	Not Available	536	Open in IMG/M
2236876007\|none_p0278233	Not Available	564	Open in IMG/M
3300000101\|DelMOSum2010_c10120856	Not Available	1030	Open in IMG/M
3300000101\|DelMOSum2010_c10168456	Not Available	776	Open in IMG/M
3300000115\|DelMOSum2011_c10142724	Not Available	721	Open in IMG/M
3300000116\|DelMOSpr2010_c10235450	Not Available	566	Open in IMG/M
3300001344\|JGI20152J14361_10067439	Not Available	834	Open in IMG/M
3300001346\|JGI20151J14362_10052658	All Organisms → Viruses → Predicted Viral	1755	Open in IMG/M
3300001355\|JGI20158J14315_10170745	Not Available	644	Open in IMG/M
3300006484\|Ga0070744_10218014	Not Available	541	Open in IMG/M
3300006735\|Ga0098038_1199140	Not Available	648	Open in IMG/M
3300006737\|Ga0098037_1269328	Not Available	543	Open in IMG/M
3300006919\|Ga0070746_10086146	All Organisms → Viruses → Predicted Viral	1583	Open in IMG/M
3300007543\|Ga0102853_1061899	Not Available	666	Open in IMG/M
3300007552\|Ga0102818_1070680	Not Available	688	Open in IMG/M
3300007555\|Ga0102817_1056054	Not Available	861	Open in IMG/M
3300007862\|Ga0105737_1041210	All Organisms → Viruses → Predicted Viral	1107	Open in IMG/M
3300007954\|Ga0105739_1031965	All Organisms → Viruses → Predicted Viral	1108	Open in IMG/M
3300007974\|Ga0105747_1199519	Not Available	659	Open in IMG/M
3300007992\|Ga0105748_10182008	Not Available	869	Open in IMG/M
3300009000\|Ga0102960_1259849	Not Available	615	Open in IMG/M
3300009071\|Ga0115566_10605505	Not Available	613	Open in IMG/M
3300009074\|Ga0115549_1071890	Not Available	1191	Open in IMG/M
3300009076\|Ga0115550_1033805	Not Available	2243	Open in IMG/M
3300009077\|Ga0115552_1082360	Not Available	1413	Open in IMG/M
3300009077\|Ga0115552_1265596	Not Available	690	Open in IMG/M
3300009193\|Ga0115551_1291678	Not Available	714	Open in IMG/M
3300009193\|Ga0115551_1458833	Not Available	545	Open in IMG/M
3300009433\|Ga0115545_1071312	All Organisms → Viruses → Predicted Viral	1294	Open in IMG/M
3300009434\|Ga0115562_1039215	Not Available	2204	Open in IMG/M
3300009436\|Ga0115008_10413702	Not Available	958	Open in IMG/M
3300009440\|Ga0115561_1156304	Not Available	891	Open in IMG/M
3300009442\|Ga0115563_1035607	Not Available	2507	Open in IMG/M
3300009443\|Ga0115557_1400695	Not Available	505	Open in IMG/M
3300009445\|Ga0115553_1019375	All Organisms → Viruses → Predicted Viral	3496	Open in IMG/M
3300009445\|Ga0115553_1099618	All Organisms → Viruses → Predicted Viral	1240	Open in IMG/M
3300009495\|Ga0115571_1253029	Not Available	707	Open in IMG/M
3300009495\|Ga0115571_1276146	Not Available	671	Open in IMG/M
3300009507\|Ga0115572_10385039	Not Available	786	Open in IMG/M
3300009508\|Ga0115567_10540522	Not Available	706	Open in IMG/M
3300009550\|Ga0115013_10357081	Not Available	920	Open in IMG/M
3300010148\|Ga0098043_1217881	Not Available	525	Open in IMG/M
3300011258\|Ga0151677_1032948	Not Available	2414	Open in IMG/M
3300014959\|Ga0134299_1004963	All Organisms → Viruses → Predicted Viral	3737	Open in IMG/M
3300017706\|Ga0181377_1051046	Not Available	791	Open in IMG/M
3300017706\|Ga0181377_1053512	Not Available	766	Open in IMG/M
3300017706\|Ga0181377_1084142	Not Available	563	Open in IMG/M
3300017708\|Ga0181369_1031524	All Organisms → Viruses → Predicted Viral	1247	Open in IMG/M
3300017709\|Ga0181387_1098350	Not Available	599	Open in IMG/M
3300017714\|Ga0181412_1078133	Not Available	800	Open in IMG/M
3300017714\|Ga0181412_1126134	Not Available	587	Open in IMG/M
3300017719\|Ga0181390_1188766	Not Available	501	Open in IMG/M
3300017729\|Ga0181396_1061029	Not Available	753	Open in IMG/M
3300017733\|Ga0181426_1085645	Not Available	631	Open in IMG/M
3300017735\|Ga0181431_1123025	Not Available	578	Open in IMG/M
3300017755\|Ga0181411_1030796	All Organisms → Viruses → Predicted Viral	1707	Open in IMG/M
3300017756\|Ga0181382_1190659	Not Available	521	Open in IMG/M
3300017757\|Ga0181420_1244764	Not Available	511	Open in IMG/M
3300017762\|Ga0181422_1138371	Not Available	750	Open in IMG/M
3300017779\|Ga0181395_1277082	Not Available	510	Open in IMG/M
3300020165\|Ga0206125_10057305	All Organisms → Viruses → Predicted Viral	1844	Open in IMG/M
3300020165\|Ga0206125_10058806	All Organisms → Viruses → Predicted Viral	1809	Open in IMG/M
3300020165\|Ga0206125_10345064	Not Available	549	Open in IMG/M
3300020169\|Ga0206127_1091000	All Organisms → Viruses → Predicted Viral	1327	Open in IMG/M
3300020169\|Ga0206127_1313121	Not Available	518	Open in IMG/M
3300020175\|Ga0206124_10078514	All Organisms → Viruses → Predicted Viral	1393	Open in IMG/M
3300020175\|Ga0206124_10145049	Not Available	959	Open in IMG/M
3300020347\|Ga0211504_1007119	All Organisms → Viruses → Predicted Viral	3633	Open in IMG/M
3300020352\|Ga0211505_1020710	Not Available	1699	Open in IMG/M
3300020385\|Ga0211677_10248526	Not Available	723	Open in IMG/M
3300020404\|Ga0211659_10368416	Not Available	626	Open in IMG/M
3300020595\|Ga0206126_10371240	Not Available	634	Open in IMG/M
3300021957\|Ga0222717_10413401	Not Available	743	Open in IMG/M
3300021958\|Ga0222718_10109166	All Organisms → Viruses → Predicted Viral	1618	Open in IMG/M
3300021959\|Ga0222716_10525458	Not Available	660	Open in IMG/M
3300021959\|Ga0222716_10671775	Not Available	554	Open in IMG/M
3300021960\|Ga0222715_10581328	Not Available	581	Open in IMG/M
3300022072\|Ga0196889_1048458	Not Available	828	Open in IMG/M
3300022074\|Ga0224906_1098496	Not Available	866	Open in IMG/M
(restricted) 3300024255\|Ga0233438_10384166	Not Available	515	Open in IMG/M
3300025070\|Ga0208667_1050318	Not Available	676	Open in IMG/M
3300025120\|Ga0209535_1107213	Not Available	984	Open in IMG/M
3300025590\|Ga0209195_1128802	Not Available	534	Open in IMG/M
3300025594\|Ga0209094_1074497	Not Available	816	Open in IMG/M
3300025632\|Ga0209194_1064050	Not Available	1010	Open in IMG/M
3300025696\|Ga0209532_1082835	Not Available	1153	Open in IMG/M
3300025696\|Ga0209532_1146109	Not Available	738	Open in IMG/M
3300025809\|Ga0209199_1095312	All Organisms → Viruses → Predicted Viral	1245	Open in IMG/M
3300025816\|Ga0209193_1034649	All Organisms → Viruses → Predicted Viral	1488	Open in IMG/M
3300025822\|Ga0209714_1057455	Not Available	1226	Open in IMG/M
3300025830\|Ga0209832_1183835	Not Available	595	Open in IMG/M
3300025876\|Ga0209223_10168076	All Organisms → Viruses → Predicted Viral	1106	Open in IMG/M
3300025881\|Ga0209309_10136812	Not Available	1262	Open in IMG/M
3300025886\|Ga0209632_10144067	Not Available	1322	Open in IMG/M
3300025897\|Ga0209425_10544416	Not Available	524	Open in IMG/M
3300025897\|Ga0209425_10552527	Not Available	518	Open in IMG/M
3300027077\|Ga0208941_1020987	Not Available	881	Open in IMG/M
3300027751\|Ga0208304_10174436	Not Available	783	Open in IMG/M
(restricted) 3300027996\|Ga0233413_10419460	Not Available	587	Open in IMG/M
3300028132\|Ga0228649_1047837	All Organisms → Viruses → Predicted Viral	1149	Open in IMG/M
3300029448\|Ga0183755_1102955	Not Available	556	Open in IMG/M
3300032073\|Ga0315315_11058177	Not Available	725	Open in IMG/M
3300032088\|Ga0315321_10217659	All Organisms → Viruses → Predicted Viral	1248	Open in IMG/M
3300032254\|Ga0316208_1106980	Not Available	684	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	99.04%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.96%

Habitat	Taxonomy	Distribution
Pelagic	Environmental → Aquatic → Marine → Pelagic	32.69%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	12.50%
Strait	Environmental → Aquatic → Marine → Strait	12.50%
Oceanic	Environmental → Aquatic → Marine → Oceanic	10.58%
Unclassified	Environmental → Aquatic → Marine → Unclassified	10.58%
Coastal	Environmental → Aquatic → Marine → Coastal	9.62%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	8.65%
Inlet	Environmental → Aquatic → Marine → Inlet	1.92%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	32.69%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	12.50%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	12.50%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	10.58%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	10.58%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	8.65%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	4.81%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	1.92%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.96%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	25.00%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	12.50%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	10.58%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	8.65%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	7.69%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	4.81%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	4.81%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	3.85%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	3.85%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	3.85%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	1.92%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.92%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	1.92%
Microbial Mat	Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat	0.96%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.96%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	0.96%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.96%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.96%
Marine Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine	0.96%
Marine Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine	0.96%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.96%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2236876001	Marine microbial communities from Columbia River, CM, sample from CR-7km from mouth, GS312-0p1-CR7-chlmax	Environmental	Open in IMG/M
2236876007	Marine microbial communities from Columbia River, CM, sample from Cape Meares, GS311-0p1-Deep1200	Environmental	Open in IMG/M
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental	Open in IMG/M
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental	Open in IMG/M
3300001344	Pelagic Microbial community sample from North Sea - COGITO 998_met_02	Environmental	Open in IMG/M
3300001346	Pelagic Microbial community sample from North Sea - COGITO 998_met_01	Environmental	Open in IMG/M
3300001355	Pelagic Microbial community sample from North Sea - COGITO 998_met_08	Environmental	Open in IMG/M
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental	Open in IMG/M
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental	Open in IMG/M
3300006737	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG	Environmental	Open in IMG/M
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental	Open in IMG/M
3300007543	Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3	Environmental	Open in IMG/M
3300007552	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.571	Environmental	Open in IMG/M
3300007555	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555	Environmental	Open in IMG/M
3300007862	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373A_0.2um	Environmental	Open in IMG/M
3300007954	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373B_0.2um	Environmental	Open in IMG/M
3300007974	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2um	Environmental	Open in IMG/M
3300007992	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um	Environmental	Open in IMG/M
3300009000	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG	Environmental	Open in IMG/M
3300009071	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405	Environmental	Open in IMG/M
3300009074	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430	Environmental	Open in IMG/M
3300009076	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511	Environmental	Open in IMG/M
3300009077	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328	Environmental	Open in IMG/M
3300009193	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321	Environmental	Open in IMG/M
3300009433	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330	Environmental	Open in IMG/M
3300009434	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516	Environmental	Open in IMG/M
3300009436	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome	Environmental	Open in IMG/M
3300009440	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512	Environmental	Open in IMG/M
3300009442	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519	Environmental	Open in IMG/M
3300009443	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110421	Environmental	Open in IMG/M
3300009445	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331	Environmental	Open in IMG/M
3300009495	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531	Environmental	Open in IMG/M
3300009507	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607	Environmental	Open in IMG/M
3300009508	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412	Environmental	Open in IMG/M
3300009550	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome	Environmental	Open in IMG/M
3300010148	Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG	Environmental	Open in IMG/M
3300011258	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeate	Environmental	Open in IMG/M
3300014959	Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0148 : 4 days incubation	Environmental	Open in IMG/M
3300017706	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG	Environmental	Open in IMG/M
3300017708	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG	Environmental	Open in IMG/M
3300017709	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27	Environmental	Open in IMG/M
3300017714	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15	Environmental	Open in IMG/M
3300017719	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21	Environmental	Open in IMG/M
3300017729	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 19 SPOT_SRF_2011-01-11	Environmental	Open in IMG/M
3300017733	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23	Environmental	Open in IMG/M
3300017735	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21	Environmental	Open in IMG/M
3300017755	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09	Environmental	Open in IMG/M
3300017756	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22	Environmental	Open in IMG/M
3300017757	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22	Environmental	Open in IMG/M
3300017762	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18	Environmental	Open in IMG/M
3300017779	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16	Environmental	Open in IMG/M
3300020165	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1	Environmental	Open in IMG/M
3300020169	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1	Environmental	Open in IMG/M
3300020175	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2	Environmental	Open in IMG/M
3300020347	Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)	Environmental	Open in IMG/M
3300020352	Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556084-ERR599144)	Environmental	Open in IMG/M
3300020385	Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)	Environmental	Open in IMG/M
3300020404	Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)	Environmental	Open in IMG/M
3300020595	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1	Environmental	Open in IMG/M
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300021960	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D	Environmental	Open in IMG/M
3300022072	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)	Environmental	Open in IMG/M
3300022074	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)	Environmental	Open in IMG/M
3300024255 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG	Environmental	Open in IMG/M
3300025070	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025120	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)	Environmental	Open in IMG/M
3300025590	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420 (SPAdes)	Environmental	Open in IMG/M
3300025594	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430 (SPAdes)	Environmental	Open in IMG/M
3300025632	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)	Environmental	Open in IMG/M
3300025696	Pelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes)	Environmental	Open in IMG/M
3300025809	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 (SPAdes)	Environmental	Open in IMG/M
3300025816	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)	Environmental	Open in IMG/M
3300025822	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414 (SPAdes)	Environmental	Open in IMG/M
3300025830	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407 (SPAdes)	Environmental	Open in IMG/M
3300025876	Pelagic Microbial community sample from North Sea - COGITO 998_met_06 (SPAdes)	Environmental	Open in IMG/M
3300025881	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412 (SPAdes)	Environmental	Open in IMG/M
3300025886	Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)	Environmental	Open in IMG/M
3300025897	Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)	Environmental	Open in IMG/M
3300027077	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_35 (SPAdes)	Environmental	Open in IMG/M
3300027751	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713 (SPAdes)	Environmental	Open in IMG/M
3300027996 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MG	Environmental	Open in IMG/M
3300028132	Seawater microbial communities from Monterey Bay, California, United States - 61D	Environmental	Open in IMG/M
3300029448	Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082	Environmental	Open in IMG/M
3300032073	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416	Environmental	Open in IMG/M
3300032088	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515	Environmental	Open in IMG/M
3300032254	Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month chalcopyrite	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
none_1303721	2236876001	Marine Estuarine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKSPVKYIKKQTLNNA
none_02782331	2236876007	Marine Estuarine	KYKIIKIGSRELKVPYASQSELKGEIAEFKAFKKSPVKYIKKKTLNSA
DelMOSum2010_101208562	3300000101	Marine	MKYKIIKIGSRELKVPYASQSELEKEVAEFKAFKKSPVKYIKKQNAE*
DelMOSum2010_101684562	3300000101	Marine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPIGYIKKKNSE*
DelMOSum2011_101427242	3300000115	Marine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPVKYIKKKNSE*
DelMOSpr2010_102354501	3300000116	Marine	RIKQKEYMKYKIIKIGSRELKVPYASQSELEKEVAEFKAFKKSPVKYIKKQNAE*
JGI20152J14361_100674392	3300001344	Pelagic Marine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKSPKAYIKKQNA*
JGI20151J14362_100526581	3300001346	Pelagic Marine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPVKYIKKTLNNA*
JGI20158J14315_101707453	3300001355	Pelagic Marine	SHHRKELNKRNYMKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPVKYIKKTLNNA
Ga0070744_102180142	3300006484	Estuarine	YMKYKIIKIGGRELKVPYASQSELKGEIAEFKEFKKSPVKYIKKQNAE*
Ga0098038_11991401	3300006735	Marine	MKYKIIKIGNRELKVPYASQSELKGEIAEFKAFKKSPVKYIKKQNAE*
Ga0098037_12693282	3300006737	Marine	GNRELKVPYASQSELKKEVAEFKEFKKNPVKYIKKTLNNA*
Ga0070746_100861461	3300006919	Aqueous	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPIKYIKKTLNSA
Ga0102853_10618991	3300007543	Estuarine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKSP
Ga0102818_10706802	3300007552	Estuarine	MKYKIIKIGGRELKVPYASQSELEKEVAEFKAFKKSPVKYIKKQNAE*
Ga0102817_10560542	3300007555	Estuarine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKSPVKYIKKQNAE*
Ga0105737_10412101	3300007862	Estuary Water	MKYKIIKIGSRELKVPYASQSELKGEIAEFKAFKKSPVKYIKKQNAE*
Ga0105739_10319652	3300007954	Estuary Water	RELKVPYASQSELKGEIAEFKAFKKNPVKYIKKKNSE*
Ga0105747_11995192	3300007974	Estuary Water	IGSRELKVPYASQSELEKEVAEFKAFKKSPVKYIKKQNAE*
Ga0105748_101820082	3300007992	Estuary Water	MKYKIIKIGSRELKVPYASQSELKGEIAEFKAFKKNPVKYIKKKNSE*
Ga0102960_12598492	3300009000	Pond Water	MKYKIIKIGSRELKVPYASQSELEKEVSEFKAFKKSPVKYIKKQNAE*
Ga0115566_106055052	3300009071	Pelagic Marine	SHHRKELNKRNYMKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPVKYIKKKNAE*
Ga0115549_10718902	3300009074	Pelagic Marine	MKYKIIKIGGRELKVPYASQSELEKEVAEFKAFKKNPVRYIKKTLNSA*
Ga0115550_10338052	3300009076	Pelagic Marine	MKYKIIKIGGRELKVPYASQSELEKEVAEFKEFKKNPVKYIKKTLNNA*
Ga0115552_10823602	3300009077	Pelagic Marine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPVKYIKK
Ga0115552_12655961	3300009077	Pelagic Marine	KIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPVKYIKKTLNNA*
Ga0115551_12916782	3300009193	Pelagic Marine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPVKYIKKTLNSA*
Ga0115551_14588332	3300009193	Pelagic Marine	IIKIGGRELKVPYASQSELKGEIAEFKAFKKNPVKYIKKTLNSA*
Ga0115545_10713122	3300009433	Pelagic Marine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKSPKAYIKKQNAE*
Ga0115562_10392151	3300009434	Pelagic Marine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKEFKKNPVRYIKKTLNSA*
Ga0115008_104137021	3300009436	Marine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPIKYIKKTLNSA*
Ga0115561_11563041	3300009440	Pelagic Marine	IKIGGRELKVPYASQSELKGEIAEFKAFKKSPKAYIKKQNAE*
Ga0115563_10356073	3300009442	Pelagic Marine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPVRYIKKTLNNA*
Ga0115557_14006952	3300009443	Pelagic Marine	KIGGRELKVPYASQSELEKEVAEFKEFKKNPVKYIKKTLNNA*
Ga0115553_10193751	3300009445	Pelagic Marine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKEFKKNPVKYIKKTLNSA*
Ga0115553_10996182	3300009445	Pelagic Marine	SHHRKELNKRNYMKYKIIKIGGRELKVPYASQSELKGEIAEFKEFKKNPVRYIKKTLNSA
Ga0115571_12530291	3300009495	Pelagic Marine	RKELNKRNYMKYKIIKIGGRELKVPYASQSELKGEIAEFKEFKKNPVRYIKKTLHSA*
Ga0115571_12761462	3300009495	Pelagic Marine	MKYKIIKIGGRELKVPYASQSELEKEVAEFKAFKKNPVKYIKKTLNNA*
Ga0115572_103850391	3300009507	Pelagic Marine	MKYKIIKIGGRELKVPYASQSELEKEVAEFKAFKKNPVKYIK
Ga0115567_105405221	3300009508	Pelagic Marine	YMKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPVKYIKKKNAE*
Ga0115013_103570811	3300009550	Marine	MKYKIIKIGGRELKVPYASQSELKKEVAEFKEFKKNPVKYIKKKNAE*
Ga0098043_12178811	3300010148	Marine	MKYKIIKIGNRELKVPYASQSELKKEVAEFKEFKKNPVKYIKKTLNNA*
Ga0151677_103294810	3300011258	Marine	MKYKIIKIGGRELKVPYASGSELKAEIAEFKEFKKNPVGYIKKTLNNA*
Ga0134299_10049639	3300014959	Marine	LNERNYMKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKSPVKYIKKKNSE*
Ga0181377_10510461	3300017706	Marine	MRYKIIKIGGRELKVPYASQSELEKEVAEFKEFKKSPKAYIKK
Ga0181377_10535122	3300017706	Marine	MKYKIIKIGGRKLKVPYASQSELKGEIAEFKAFKKSPVKYIKKQNAE
Ga0181377_10841421	3300017706	Marine	MKYKIIKIGGRELKVPYASQSELEKEVAEFKEFKKSPKAYIKK
Ga0181369_10315242	3300017708	Marine	MKYKIIKIGGRELKVPYASQSELEKEVAEFKEFKKNPVKYIKKQNAE
Ga0181387_10983501	3300017709	Seawater	IIKIGGRELKVPYASQSELEKEVAEFKAFKKSPVKYIKKQNAE
Ga0181412_10781331	3300017714	Seawater	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKSPVKYIKK
Ga0181412_11261342	3300017714	Seawater	KQKEYMKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPVKYIKKKNSE
Ga0181390_11887661	3300017719	Seawater	MKYKIIKIGNRELKVPYATQKELKAEVAEFKAFKKNPVRYTKKNLAV
Ga0181396_10610291	3300017729	Seawater	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKSPVKYIKKQ
Ga0181426_10856452	3300017733	Seawater	KQKEYMKYKIIKIGSRELKVPYASQSELKGEIAEFKAFKKSPVKYIKKKNSE
Ga0181431_11230251	3300017735	Seawater	RIKQKEYMKYKIIKIGSRELKVPYASQSELKGEIAEFKAFKKSPIGYIKKKNSE
Ga0181411_10307962	3300017755	Seawater	EYMKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPVKYIKKKNSE
Ga0181382_11906592	3300017756	Seawater	DKELNERNYMKYKIIKIGGRELKVPYASQSELKGEIAEFKEFKKSPVKYIKKQNAE
Ga0181420_12447642	3300017757	Seawater	MKYKIIKIGGRELKVPYASQSELEKEVAEFKEFKKSPVKYIKKQNAE
Ga0181422_11383712	3300017762	Seawater	MKYKIIKIGSRELKVPYASQSELKGEIAEFKAFKKNPVKYIKKKNSE
Ga0181395_12770822	3300017779	Seawater	MKYQIIKIGGRELKVPYASQSELKGEIAEFKAFKKSPAKYIKKQNAE
Ga0206125_100573052	3300020165	Seawater	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKSPKAYIKKQNAE
Ga0206125_100588062	3300020165	Seawater	MKYKIIKIGSRELKVPYASQSELKGEIAEFKAFKKSPVKYIKKQNAE
Ga0206125_103450642	3300020165	Seawater	YKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPVKYIKKTLNNA
Ga0206127_10910001	3300020169	Seawater	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPVKYIKKTLNNA
Ga0206127_13131211	3300020169	Seawater	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPIGYIKKKNSE
Ga0206124_100785142	3300020175	Seawater	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKSPVKYIKKQNAE
Ga0206124_101450492	3300020175	Seawater	MKYKIIKIGGRELKVPYASQSELEKEVAEFKAFKKNPVKYIKKTLNNA
Ga0211504_10071193	3300020347	Marine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPVKYIRKQNAE
Ga0211505_10207102	3300020352	Marine	MKYKIIKIGGRELKVPYASQSELEKEVAEFKEFKKNPVKYIRKENAE
Ga0211677_102485261	3300020385	Marine	MKYKIIKIGGRELKVPYASQSELEKEVAEFKAFKKSPKAYIKKQNA
Ga0211659_103684162	3300020404	Marine	YMKYKIIKIGNRELKVPYASQSELKKEVAEFKEFKKNPVKYIKKTLNNA
Ga0206126_103712401	3300020595	Seawater	MKYKIIKIGGRELKVPYASQSELKGEIAEFKEFKKNPVKYIKKKN
Ga0222717_104134011	3300021957	Estuarine Water	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPIGYIK
Ga0222718_101091663	3300021958	Estuarine Water	LNKRNYMKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKSPVKYIKKKNSE
Ga0222716_105254582	3300021959	Estuarine Water	MKYKIIKIGSRELKVPYASQSELKGEIAEFKEFKKSPVKYIKKKNSE
Ga0222716_106717753	3300021959	Estuarine Water	KIIKIGGRELKVPYASQSELKGEIAEFKEFKKSPVKYIKKQNAE
Ga0222715_105813282	3300021960	Estuarine Water	RIKQKEYMKYKIIKIGSRELKVPYASQSELKGEIAEFKAFKKNPIGYIKKKNSE
Ga0196889_10484581	3300022072	Aqueous	MKYKIIKIGSRELKVPYASQSELEKEVAEFKVFKKSPVKYIKKQNAE
Ga0224906_10984962	3300022074	Seawater	MKYKIIKIGGRELKVPYASQSELEKEVAEFKAFKKSPVKYIKKQ
(restricted) Ga0233438_103841661	3300024255	Seawater	KIGSRELKVPYASQSELKGEIAEFKAFKKSPVKYIKKKNSE
Ga0208667_10503181	3300025070	Marine	MKYKIIKIGNRELKVPYASQSELKKEVAEFKEFKKNPVKYIKKTLNNA
Ga0209535_11072131	3300025120	Marine	MKYKIIKIGSRELKVPYASQSELEKEVSEFKEFKKSPVKYIKKQNAE
Ga0209195_11288022	3300025590	Pelagic Marine	RKELNKRNYMKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPVKYIKKTLNNA
Ga0209094_10744971	3300025594	Pelagic Marine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKSPKAYIKKQNA
Ga0209194_10640502	3300025632	Pelagic Marine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPVKYIKKKNAE
Ga0209532_10828351	3300025696	Pelagic Marine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKSPKAYI
Ga0209532_11461091	3300025696	Pelagic Marine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKK
Ga0209199_10953121	3300025809	Pelagic Marine	RKELNKRNYMKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPVKYIKKKNAE
Ga0209193_10346492	3300025816	Pelagic Marine	MKYKIIKIGGRELKVPYASQSELKGEIVEFKEFKKNPVKYIKKTLNNA
Ga0209714_10574551	3300025822	Pelagic Marine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPVKYIKKK
Ga0209832_11838351	3300025830	Pelagic Marine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPV
Ga0209223_101680762	3300025876	Pelagic Marine	HRKELNKRNYMKYKIIKIGGRELKVPYASQSELKGEIAEFKEFKKNPVRYIKKTLNSA
Ga0209309_101368121	3300025881	Pelagic Marine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKEFKKNPVRYI
Ga0209632_101440672	3300025886	Pelagic Marine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKEFKKNPVRYIKKTLNSA
Ga0209425_105444161	3300025897	Pelagic Marine	KIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPVKYIKKTLNNA
Ga0209425_105525271	3300025897	Pelagic Marine	KIIKIGGRELKVPYASQSELKGEIAEFKAFKKSPKAYIKKQNA
Ga0208941_10209872	3300027077	Marine	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKNPVKYIKKKNSE
Ga0208304_101744362	3300027751	Estuarine	MKYKIIKIGSRELKVPYASQSELEKEVAEFKEFKKSPVKYIKKKNSE
(restricted) Ga0233413_104194601	3300027996	Seawater	MKYKIIKIGSRELKVPYASQSELKGEIAEFKAFKKSPVKYIKKKNSE
Ga0228649_10478371	3300028132	Seawater	MKYKIIKIGGRELKVPYASQSELKGEIAEFKAFKKSPVKYIKKKNSE
Ga0183755_11029551	3300029448	Marine	ELKVPYASQSELEKEVAEFKEFKKNPVKYIRKQNAE
Ga0315315_110581771	3300032073	Seawater	MKYKIIKIGSRELKVPYASQSELKGEIAEFKAFKKSPVKYIKKKNS
Ga0315321_102176591	3300032088	Seawater	MKYKIIKIGSRELKVPYASQSELEKEVAEFKAFKK
Ga0316208_11069802	3300032254	Microbial Mat	MKYKIIKIGSRELKVPYASQSELEKEVAEFKAFKKSPVKYIKKQNAE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters