NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F097313

Metagenome / Metatranscriptome Family F097313

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F097313
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 61 residues
Representative Sequence MAFEPAVIEQWIYETLSGDATLLGLLAPDNKPNGFQMGIYNTVAPQTDPVSRK
Number of Associated Samples 84
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 39.42 %
% of genes from short scaffolds (< 2000 bps) 36.54 %
Associated GOLD sequencing projects 76
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (70.192 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake
(19.231 % of family members)
Environment Ontology (ENVO) Unclassified
(39.423 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(45.192 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 26.42%    β-sheet: 0.00%    Coil/Unstructured: 73.58%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF09260A_amylase_dom_C 1.92
PF13229Beta_helix 0.96



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A70.19 %
All OrganismsrootAll Organisms29.81 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000756|JGI12421J11937_10088978All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage871Open in IMG/M
3300004240|Ga0007787_10155674All Organisms → Viruses → Predicted Viral1099Open in IMG/M
3300006802|Ga0070749_10272584Not Available954Open in IMG/M
3300006802|Ga0070749_10278080Not Available943Open in IMG/M
3300006802|Ga0070749_10421469All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage734Open in IMG/M
3300006805|Ga0075464_10261686Not Available1036Open in IMG/M
3300006863|Ga0075459_1004950All Organisms → Viruses → Predicted Viral2155Open in IMG/M
3300007555|Ga0102817_1041510All Organisms → Viruses → Predicted Viral1009Open in IMG/M
3300007555|Ga0102817_1048350All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage930Open in IMG/M
3300007636|Ga0102856_1019771All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage986Open in IMG/M
3300007708|Ga0102859_1016393All Organisms → Viruses → Predicted Viral1897Open in IMG/M
3300008450|Ga0114880_1016954All Organisms → Viruses → Predicted Viral3455Open in IMG/M
3300009009|Ga0105105_10135594All Organisms → Viruses → Predicted Viral1226Open in IMG/M
3300009152|Ga0114980_10327212All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage886Open in IMG/M
3300009152|Ga0114980_10448055All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage738Open in IMG/M
3300009160|Ga0114981_10351822All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage796Open in IMG/M
3300009163|Ga0114970_10070972All Organisms → Viruses → Predicted Viral2203Open in IMG/M
3300009163|Ga0114970_10187261All Organisms → Viruses → Predicted Viral1224Open in IMG/M
3300009164|Ga0114975_10118116All Organisms → Viruses → Predicted Viral1528Open in IMG/M
3300009194|Ga0114983_1089053All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage688Open in IMG/M
3300009194|Ga0114983_1117063All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage582Open in IMG/M
3300017736|Ga0181365_1074077Not Available837Open in IMG/M
3300021328|Ga0210298_1244978All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage745Open in IMG/M
3300022179|Ga0181353_1034722All Organisms → Viruses → Predicted Viral1337Open in IMG/M
3300022179|Ga0181353_1103184All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage699Open in IMG/M
3300024298|Ga0255178_1037177All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage970Open in IMG/M
3300024356|Ga0255169_1038593Not Available846Open in IMG/M
3300025896|Ga0208916_10148153Not Available1008Open in IMG/M
3300027764|Ga0209134_10090588All Organisms → Viruses → Predicted Viral1041Open in IMG/M
3300027804|Ga0209358_10222762All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage964Open in IMG/M
3300027973|Ga0209298_10141450All Organisms → Viruses → Predicted Viral1019Open in IMG/M
3300027974|Ga0209299_1064870All Organisms → Viruses → Predicted Viral1489Open in IMG/M
3300031746|Ga0315293_10681610Not Available767Open in IMG/M
3300031746|Ga0315293_11164616All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage538Open in IMG/M
3300031834|Ga0315290_10770021All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage825Open in IMG/M
3300032046|Ga0315289_10739441Not Available881Open in IMG/M
3300032093|Ga0315902_11071594All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage596Open in IMG/M
3300032156|Ga0315295_10963376Not Available848Open in IMG/M
3300032516|Ga0315273_11694962Not Available766Open in IMG/M
3300034073|Ga0310130_0077227All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage992Open in IMG/M
3300034116|Ga0335068_0110070All Organisms → Viruses → Predicted Viral1533Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake19.23%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine13.46%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake10.58%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment10.58%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater7.69%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater7.69%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous7.69%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface4.81%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater2.88%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment1.92%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water1.92%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic0.96%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment0.96%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment0.96%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake0.96%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater0.96%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment0.96%
FreshwaterEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater0.96%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.96%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine0.96%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.96%
Fracking WaterEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water0.96%
Deep Subsurface SedimentEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment0.96%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000756Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011EnvironmentalOpen in IMG/M
3300004240Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SNEnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300006639Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11EnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006805Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNAEnvironmentalOpen in IMG/M
3300006863Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNAEnvironmentalOpen in IMG/M
3300007542Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaGEnvironmentalOpen in IMG/M
3300007555Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555EnvironmentalOpen in IMG/M
3300007559Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541EnvironmentalOpen in IMG/M
3300007636Estuarine microbial communities from the Columbia River estuary - metaG 1371A-3EnvironmentalOpen in IMG/M
3300007670Estuarine microbial communities from the Columbia River estuary - metaG 1449C-3EnvironmentalOpen in IMG/M
3300007708Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02EnvironmentalOpen in IMG/M
3300007972Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0umEnvironmentalOpen in IMG/M
3300007973Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2umEnvironmentalOpen in IMG/M
3300008450Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigsEnvironmentalOpen in IMG/M
3300008999Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545EnvironmentalOpen in IMG/M
3300009009Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015EnvironmentalOpen in IMG/M
3300009026Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575EnvironmentalOpen in IMG/M
3300009056Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3EnvironmentalOpen in IMG/M
3300009152Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaGEnvironmentalOpen in IMG/M
3300009155Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaGEnvironmentalOpen in IMG/M
3300009160Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaGEnvironmentalOpen in IMG/M
3300009161Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaGEnvironmentalOpen in IMG/M
3300009163Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaGEnvironmentalOpen in IMG/M
3300009164Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaGEnvironmentalOpen in IMG/M
3300009168Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015EnvironmentalOpen in IMG/M
3300009180Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaGEnvironmentalOpen in IMG/M
3300009194Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RTEnvironmentalOpen in IMG/M
3300010160Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaGEnvironmentalOpen in IMG/M
3300010334Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)EnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300010885northern Canada Lakes Co-assemblyEnvironmentalOpen in IMG/M
3300012665Freshwater microbial communities from Talbot River, Ontario, Canada - S11EnvironmentalOpen in IMG/M
3300013127 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cmEnvironmentalOpen in IMG/M
3300013128 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 69cmEnvironmentalOpen in IMG/M
3300013133 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment s1_kivu2a2EnvironmentalOpen in IMG/M
3300017716Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.DEnvironmentalOpen in IMG/M
3300017736Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.NEnvironmentalOpen in IMG/M
3300017747Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.NEnvironmentalOpen in IMG/M
3300017766Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.DEnvironmentalOpen in IMG/M
3300017777Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300020048Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915EnvironmentalOpen in IMG/M
3300020151Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1EnvironmentalOpen in IMG/M
3300021328Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R877 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300022179Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.NEnvironmentalOpen in IMG/M
3300024298Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepC_8dEnvironmentalOpen in IMG/M
3300024351Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_0hEnvironmentalOpen in IMG/M
3300024356Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepC_8dEnvironmentalOpen in IMG/M
3300024495Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_8dEnvironmentalOpen in IMG/M
3300025896Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026455Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepC_8hEnvironmentalOpen in IMG/M
3300027196Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545 (SPAdes)EnvironmentalOpen in IMG/M
3300027206Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027213Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027320Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 (SPAdes)EnvironmentalOpen in IMG/M
3300027396Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_8hEnvironmentalOpen in IMG/M
3300027659Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027764Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027770Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027804Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027899Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)EnvironmentalOpen in IMG/M
3300027973Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027974Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300028025Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FCEnvironmentalOpen in IMG/M
3300028103Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepC_8dEnvironmentalOpen in IMG/M
3300031746Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20EnvironmentalOpen in IMG/M
3300031834Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300031997Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0EnvironmentalOpen in IMG/M
3300032046Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40EnvironmentalOpen in IMG/M
3300032050Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122EnvironmentalOpen in IMG/M
3300032093Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117EnvironmentalOpen in IMG/M
3300032156Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0EnvironmentalOpen in IMG/M
3300032516Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0EnvironmentalOpen in IMG/M
3300033995Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056EnvironmentalOpen in IMG/M
3300034013Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034EnvironmentalOpen in IMG/M
3300034062Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045EnvironmentalOpen in IMG/M
3300034073Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XLEnvironmentalOpen in IMG/M
3300034092Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069EnvironmentalOpen in IMG/M
3300034102Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112EnvironmentalOpen in IMG/M
3300034106Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131EnvironmentalOpen in IMG/M
3300034116Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOREnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI12421J11937_1008897813300000756Freshwater And SedimentMAYEPAVIEQWIYETLSGDATLLGLLAPNNEPNGFQMGIYNTIAPQ
Ga0007787_1015567443300004240Freshwater LakeMAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMSVYNTIAPQVDPISRKQPITP
Ga0070744_1015317723300006484EstuarineMAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSR
Ga0079301_123804023300006639Deep SubsurfaceMAFEPAVIEQWIYETLTGDSTLMGLLAPNNKPSGFQMSVYNTIAPQIDPISRKQPITPYIVFDRAGNAGQDQDTICG
Ga0070749_1027258433300006802AqueousMAYEPAVIEQWIYETLSGDATLSGLLAIDNKPDGYQMGIYNTVAPQLDPISSKPVQVPYVVFSRAGAGSDDEDTLCGGRAFTYPN
Ga0070749_1027808013300006802AqueousMSYEIPTIDQWIYETLSGDATLLGLLAPDNKPNGYQQS
Ga0070749_1042146913300006802AqueousMAFEPAVIEQWIYETLTGDSTLMGLLAPDNKPNGFQMSVYNTIAPQVDPISRKQPITPYVVFDRAGN
Ga0070749_1050262023300006802AqueousMSYEIPTIDQWIYETLTGDATLAELLAPDNKPNGYQMGIYNSVAPQIDPISRKQVQVPYVVFSSTSQTVV
Ga0075464_1026168613300006805AqueousMAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMAIYNTIAPQIDPISRKQPVTPYVVFDRAGSAGQDQ
Ga0075459_100495043300006863AqueousMAFEPAVIEQWIYETLTGDATLMGLLAPDNKPNGFQMAVYNTIAPQIDPISRKQPITPYVVFDRAGN
Ga0099846_134992323300007542AqueousMAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPISRRPVQVPYVVFSRAGASGDDEDTLCGARVF
Ga0102817_104151013300007555EstuarineMSYELPTIDQWIYETLTGDATLLGLLAPNNEPNGYQMGIYNAVAPQVDPISRRPVQVPYVVFTSASQAVLERSLCN
Ga0102817_104835013300007555EstuarineMAYEPAVIEQWIYETLSGDATLLGLLAPNNEPNGFQMGIYNTVAPQTDPVSRRPVQVPYVVFSRAGASGDDEDALC
Ga0102828_119239013300007559EstuarineMAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGFQMGIYNTVAPQTDPVSRRPVQVPYV
Ga0102856_101977133300007636EstuarineMAFEPAVIEQWIYDTLTGDATLMGLLAPDNKPNGFQMSIYNTIAPQIDPISRKQPVTPYVVFDRAGSA
Ga0102862_116621923300007670EstuarineMAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGFQ
Ga0102859_101639313300007708EstuarineMAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGFQMGIYNTVAPQTDPVSRRPVQVPYVVFSRAG
Ga0105745_121593023300007972Estuary WaterMAYEQAVIEQWIYETLSGDATLLGLLAPDNQPNGFQMGIYNTVAPQTDPISRRPVQVPYVVFSRAGA
Ga0105746_126445423300007973Estuary WaterMAFEPAVIEQWIYETLTGDATLMGLLAPDNKPNGFQMAIYNTIAPQIDPISRKQPVTPYVVFDRA
Ga0114880_101695463300008450Freshwater LakeMAFEPAVIEQWIYETLTGDATLMGLLAPDNKPNGFQMAVYNTIAPQIDPISRKQP
Ga0102816_122465623300008999EstuarineMAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSRRPVQVPYVVFSRAGASGEDEDTMCGARVFPY
Ga0105105_1013559443300009009Freshwater SedimentMAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMSVYNTIAPQIDPI
Ga0102829_119777623300009026EstuarineMAYEPAVIEQWIYETLSGDATLLGLLAPNNEPNGFQMGIYNTVAPQTDPVSRRPVQVPYVVF
Ga0102860_107375713300009056EstuarineMAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGFQMGIYNTVAPQTDPVSRKPVQ
Ga0114980_1032721213300009152Freshwater LakeMAFEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSR
Ga0114980_1044805513300009152Freshwater LakeMAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPVS
Ga0114968_1043382713300009155Freshwater LakeMAFEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQVDPVSRRP
Ga0114968_1052778923300009155Freshwater LakeMAYEPAVIEQWIYETLSGDVTLMDLLSTSNQPSGYQQGIYNTVAPQVDPVSRRPPQLPYVVFSRAGAS
Ga0114981_1035182213300009160Freshwater LakeMAFEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQ
Ga0114981_1063662213300009160Freshwater LakeMAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGYQMSIYNTVAPQVDPVSRK
Ga0114966_1079982523300009161Freshwater LakeMAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGYQMGIYNTVAPQTDPVSRRPPQLPYVVFSRAGASGDDE
Ga0114970_1007097213300009163Freshwater LakeMAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMGVYNTIAPQADPVSRKQPITPYIVFDRAGN
Ga0114970_1018726143300009163Freshwater LakeMAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGYQMSIYNTV
Ga0114975_1011811643300009164Freshwater LakeMAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGYQMSIYNTVAPQTDPV
Ga0105104_1065578623300009168Freshwater SedimentMAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMAIYNTIAPQI
Ga0114979_1069691913300009180Freshwater LakeMAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSRKPVQVPYVVFSRAGASGDDEDTLCGARV
Ga0114983_108905333300009194Deep SubsurfaceMAYEPAVIEQWIYETLSGDATLLGLLAPNNEPNGFQ
Ga0114983_111706323300009194Deep SubsurfaceMAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGYQMSIYNTVAPQTDPVSRRPVQVPYVVFGRAGASGDDEDTLCGARVFTFPN
Ga0114983_113192823300009194Deep SubsurfaceMAFEPAVIEQWIYETLSGDVTLMGLLAPDNRPNGYQMGIYNTVAPQSDPISRRPVQVPYVVFSRAG
Ga0114983_113795423300009194Deep SubsurfaceMAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMGVYNTIAPQTDPISRKQPVTPYIVFDRAGNAGQDQDVLCGS
Ga0114967_1044554013300010160Freshwater LakeMAFEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPISRRP
Ga0136644_1008559953300010334Freshwater LakeMAFEPAVIEQWIYETLSGDVTLMDLLSTSNQPSGYQQGIYNTTAPQVDPVSRRPPQLPYV
Ga0129333_1155169113300010354Freshwater To Marine Saline GradientMAYEPAVIEQWIYETLSGDATLSGLLAIDNKPDGYQMGIYN
Ga0133913_1194255813300010885Freshwater LakeMAYEPAVIEQWIYETLSGDVTLMDLLSTSNQPSGYQQGIYNTVAPQ
Ga0157210_103364413300012665FreshwaterMAYEPAVIEQWIYETLSGDVTLLGLLAPNNEPNGFQMGIYNTVAPQTDPISRRPVQVPYVVFSRAGASGDD
(restricted) Ga0172365_1087388823300013127SedimentMAFEPAVIEQWIYETLTGDATLMGLLAPDNKPNGFQMSVYNTIAPQIDPVSRKQPV
(restricted) Ga0172366_1079463413300013128SedimentMAFEPAVIEQWIYETLTGDATLMGLLAPDNKPNGFQMSVYNTIAPQIDPVSRKQPVTPYVVFDRAG
(restricted) Ga0172362_1081620823300013133SedimentMAFEPAMIEQWIYETLTGDATLMGLLAPDNKPNGFQMSVYNTIAPQIDPVSRKQ
Ga0181350_104722233300017716Freshwater LakeMAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGFQMGIYNTVAPQTDPISRRPVQVPYVVFSRAGASGDDEDTLC
Ga0181365_107407733300017736Freshwater LakeMAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMGVYNTIAPQTD
Ga0181352_102381113300017747Freshwater LakeMAFEPAVIEQWIYETLTGDSTLMGLLAPDNKPNGFQMAVYNTIAPQ
Ga0181343_111060613300017766Freshwater LakeMAYEPAVIEQWIYETLSGDSTLSGLLAVDNKPDGYQMGIYNTVAPQIDPISRKPVQVPYVVFSRAGASGEDEDTLCGGRAFT
Ga0181343_113258233300017766Freshwater LakeMAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGYQMSIYNTVAPQTDPISRRP
Ga0181357_133209813300017777Freshwater LakeMAFEPAVIEQWIYETLSGDATLLGLLAPNNQPNGYQMSIYNTVAPQTDPISRRP
Ga0207193_172678523300020048Freshwater Lake SedimentMAYEPAVIEQWIYETLSGDATLLGLLAPDNKPDGYQMGIYNTVAPQ
Ga0211736_1059337233300020151FreshwaterMSFEIPTIDQWIYETLSGDATLLGLLAPDNRPNGYQQSIYNSVAPQVDVVSRKPVQAPYVVFTVDSQAT
Ga0210298_124497833300021328EstuarineMAFEPAVIEQWIYETLSGDATLLGLLAPDNKPNGFQMGIYNTVAPQTDPVSRK
Ga0222712_1062086113300021963Estuarine WaterMAFEPAVIEQWIYDTLTGDVTLMGLLAPDNKPNGFQMGVYNTIAPQTDPVSRKQPITPYIVFDRAGNAGQD
Ga0181353_103472243300022179Freshwater LakeMAFEPAVIEQWIYETLTGDATLMGLLAPDNKPNGFQMGIYNTIAPQIDPISRKQPITPYVVFDRAGNAG
Ga0181353_110318413300022179Freshwater LakeMAFEPAVIEQWIYETLTGDATLMGLLAPDNKPNGFQMAVYNTIAPQIDPISRKQPI
Ga0255178_103717713300024298FreshwaterMAFEPAVIEQWIYETLTGDSTLMGLLAPDNKPSGFQMSVYNTIAPQIDPISRKQPITPYIVFDR
Ga0255141_106344223300024351FreshwaterMAYEPAVIEQWLYETLSNDATLQGLLAVDNKPNGYQQGIYNT
Ga0255141_107113213300024351FreshwaterMAYEPAVIEQWLYETLSNDVTLQGLLAVDNKPNGYQQG
Ga0255169_103859313300024356FreshwaterMAYEPAVIEQWLYETLSNDATLQGLLAVDNKPNGYQQGIYNTVAPQLDPISRKPVQVPYVVFDRAGNAGQDQDVIC
Ga0255164_107413313300024495FreshwaterMAYEPAVIEQWLYETLSNDATLQGLLAVDNKPNGYQQGIYNTVAPQLDPISRKPVQVPYVVFDRAGNAGQDQDVICGS
Ga0208916_1014815313300025896AqueousMAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMAIYNTIAPQIDPISRKQPVTPYVVFD
Ga0255155_107637513300026455FreshwaterMAFEPAVIEQWIYETLTGDSTLMGLLAPDNKPSGFQMSVYNTIAPQIDPI
Ga0208438_107526123300027196EstuarineMSYELPTIDQWIYETLTGDATLLGLLAPNNEPNGYQMGIYNAVAPQVDPISRRPVQVPYVVFTSA
Ga0208023_102225013300027206EstuarineMAFEPAVIEQWIYDTLTGDATLMGLLAPDNKPNGFQMSIYNTIAPQIDPISRKQP
Ga0208555_105108513300027213EstuarineMAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGFQMGIYNTVAPQTDPVSR
Ga0208923_102659633300027320EstuarineMAYEPAVIEQWIYETLSGDATLLGLLAPNNEPNGFQMGIYNTVAPQTDPVSRRP
Ga0255146_112509623300027396FreshwaterMAFEPAVIEQWIYETLTGDSTLMGLLAPDNKPSGFQMSVYNTIAPQIDPISRKQPITPYIVFDRAGNAGQDQD
Ga0208975_118628323300027659Freshwater LenticMAFEPAVIEQWIYETLSGDATLLGLLAPDNQPNGYQMGIYNTIAPQTDPVSRK
Ga0209134_1009058833300027764Freshwater LakeMAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMAIYNTIAPQIDPISRKQPVTPYVVF
Ga0209086_1024274133300027770Freshwater LakeMAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPISRRPVQVPYVVFSR
Ga0209358_1022276213300027804Freshwater LakeMAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMSVYNTIAPQVDPISRKQPITPY
Ga0209668_1072591613300027899Freshwater Lake SedimentMAYEPAVIEQWIYETLSGDSTLLGLLAVDNKPDGYQMGIYNTVAPQIDP
Ga0209298_1014145013300027973Freshwater LakeMAFEPAVIEQWIYETLSGDATLLGLLAPDNQPNGYQMSIYNTVAPQTDPVSRKPVQVPYVVFS
Ga0209298_1024262213300027973Freshwater LakeMAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSRKPVQVPYVVFSRAGASGDDEDTV
Ga0209299_106487013300027974Freshwater LakeMAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGYQMSIYNTVAPQVD
Ga0209299_119820023300027974Freshwater LakeMAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSRKPVQVPYVVFSRAGASGDDEDTLCGA
Ga0209299_130633113300027974Freshwater LakeMAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMAIYNTIAPQIDPISRKQPVTPYV
Ga0247723_116752513300028025Deep Subsurface SedimentMAYEPAVIEQWIYETLSGDATLLGMLAPDNQPNGFQMGIYNTVAPQSDPISRRPVQVPYVVFSRAG
Ga0255172_102687333300028103FreshwaterMAFEPAVIEQWIYETLTGDSTLMGLLAPDNKPSGFQMSVYNTIAPQIDPISRKQPITPYIVFDRAGNAGQ
Ga0315293_1068161023300031746SedimentMAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSRRPVQVPYVVFSRAGASGDDEDALCGARVFTYPN
Ga0315293_1116461623300031746SedimentMAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMGVYNTIAPQTDPVSRKQPVTPY
Ga0315290_1077002113300031834SedimentMAYEPAVIEQWIYETLSGDTTLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSRRPVQVPYVVFSR
Ga0315904_1098986823300031951FreshwaterMSYEIPTIDQWIYETLTGDTTLAELLAPDNKPGGYQMGIYNSVAPQIDPISRK
Ga0315278_1160761423300031997SedimentMAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSRRPVQVPYVVFSRAGASG
Ga0315289_1073944113300032046SedimentMAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSRRPVQVPYVVFSRAGASGDDE
Ga0315289_1118373223300032046SedimentMAYEPAVIEQWIYETLSGDTTLLGLLAPNNEPNGYQMGIYNTVAPQTDPVSRRPVQVPYVVFSRAGKR
Ga0315906_1081264033300032050FreshwaterMAYEPAVIEQWIYETLSGDATLLGLLAPDNQPDGYQMGIYNTVAPQTDPISRRPVQV
Ga0315902_1107159413300032093FreshwaterMAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPSGFQMGVYNTIAPQTDPISRKQPITPYI
Ga0315295_1096337613300032156SedimentMAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGI
Ga0315273_1169496223300032516SedimentMAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSRRPVQVPYVVFSRAGASGDDEDALCGARVFTYPNYR
Ga0335003_0242773_2_2113300033995FreshwaterMAYEPAVIEQWIYETLSGDATLLGLLAPDNKPDGYQMGIYNTVAPQTDPVSRKPVQVPYVVFSRAGASGD
Ga0334991_0379794_3_1613300034013FreshwaterMAYEPAVIEQWIYETLSGDATLLGLLAPDNKPDGYQMGIYNTVAPQTDPVSRK
Ga0334995_0687533_2_1333300034062FreshwaterMAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVA
Ga0310130_0077227_795_9923300034073Fracking WaterMAFEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQIDPISRKPVQVPYVVFSRAG
Ga0335010_0194825_3_1073300034092FreshwaterMAYEPAVIEQWIYETLSGDATLLGLLAPDNKPDGY
Ga0335029_0565359_2_1933300034102FreshwaterMAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMSIYNTIAPQIDPISRKQPVTPYVVFDR
Ga0335036_0630621_424_6453300034106FreshwaterMAFEPAVIEQWIYDTLTGDATLMGLLAPDNKPNGFQMSIYNTIAPQIDPISRKQPVTPYVVFDRAGSAGQDQDT
Ga0335068_0110070_1308_15323300034116FreshwaterMSYELPTIDQWIYETLTGDATLLGLLAPNNEPNGYQMGIYNAVAPQVDPISRRPVQVPYVVFTSASQAVLERSLC
Ga0335068_0391192_2_1303300034116FreshwaterMAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTV


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