Basic Information | |
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Family ID | F097313 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 104 |
Average Sequence Length | 61 residues |
Representative Sequence | MAFEPAVIEQWIYETLSGDATLLGLLAPDNKPNGFQMGIYNTVAPQTDPVSRK |
Number of Associated Samples | 84 |
Number of Associated Scaffolds | 104 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 100.00 % |
% of genes near scaffold ends (potentially truncated) | 39.42 % |
% of genes from short scaffolds (< 2000 bps) | 36.54 % |
Associated GOLD sequencing projects | 76 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (70.192 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (19.231 % of family members) |
Environment Ontology (ENVO) | Unclassified (39.423 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (45.192 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 26.42% β-sheet: 0.00% Coil/Unstructured: 73.58% | Feature Viewer |
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Pfam ID | Name | % Frequency in 104 Family Scaffolds |
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PF09260 | A_amylase_dom_C | 1.92 |
PF13229 | Beta_helix | 0.96 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 70.19 % |
All Organisms | root | All Organisms | 29.81 % |
Visualization |
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Scaffold | Taxonomy | Length | IMG/M Link |
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3300000756|JGI12421J11937_10088978 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 871 | Open in IMG/M |
3300004240|Ga0007787_10155674 | All Organisms → Viruses → Predicted Viral | 1099 | Open in IMG/M |
3300006802|Ga0070749_10272584 | Not Available | 954 | Open in IMG/M |
3300006802|Ga0070749_10278080 | Not Available | 943 | Open in IMG/M |
3300006802|Ga0070749_10421469 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 734 | Open in IMG/M |
3300006805|Ga0075464_10261686 | Not Available | 1036 | Open in IMG/M |
3300006863|Ga0075459_1004950 | All Organisms → Viruses → Predicted Viral | 2155 | Open in IMG/M |
3300007555|Ga0102817_1041510 | All Organisms → Viruses → Predicted Viral | 1009 | Open in IMG/M |
3300007555|Ga0102817_1048350 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 930 | Open in IMG/M |
3300007636|Ga0102856_1019771 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 986 | Open in IMG/M |
3300007708|Ga0102859_1016393 | All Organisms → Viruses → Predicted Viral | 1897 | Open in IMG/M |
3300008450|Ga0114880_1016954 | All Organisms → Viruses → Predicted Viral | 3455 | Open in IMG/M |
3300009009|Ga0105105_10135594 | All Organisms → Viruses → Predicted Viral | 1226 | Open in IMG/M |
3300009152|Ga0114980_10327212 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 886 | Open in IMG/M |
3300009152|Ga0114980_10448055 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 738 | Open in IMG/M |
3300009160|Ga0114981_10351822 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 796 | Open in IMG/M |
3300009163|Ga0114970_10070972 | All Organisms → Viruses → Predicted Viral | 2203 | Open in IMG/M |
3300009163|Ga0114970_10187261 | All Organisms → Viruses → Predicted Viral | 1224 | Open in IMG/M |
3300009164|Ga0114975_10118116 | All Organisms → Viruses → Predicted Viral | 1528 | Open in IMG/M |
3300009194|Ga0114983_1089053 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 688 | Open in IMG/M |
3300009194|Ga0114983_1117063 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 582 | Open in IMG/M |
3300017736|Ga0181365_1074077 | Not Available | 837 | Open in IMG/M |
3300021328|Ga0210298_1244978 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 745 | Open in IMG/M |
3300022179|Ga0181353_1034722 | All Organisms → Viruses → Predicted Viral | 1337 | Open in IMG/M |
3300022179|Ga0181353_1103184 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 699 | Open in IMG/M |
3300024298|Ga0255178_1037177 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 970 | Open in IMG/M |
3300024356|Ga0255169_1038593 | Not Available | 846 | Open in IMG/M |
3300025896|Ga0208916_10148153 | Not Available | 1008 | Open in IMG/M |
3300027764|Ga0209134_10090588 | All Organisms → Viruses → Predicted Viral | 1041 | Open in IMG/M |
3300027804|Ga0209358_10222762 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 964 | Open in IMG/M |
3300027973|Ga0209298_10141450 | All Organisms → Viruses → Predicted Viral | 1019 | Open in IMG/M |
3300027974|Ga0209299_1064870 | All Organisms → Viruses → Predicted Viral | 1489 | Open in IMG/M |
3300031746|Ga0315293_10681610 | Not Available | 767 | Open in IMG/M |
3300031746|Ga0315293_11164616 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 538 | Open in IMG/M |
3300031834|Ga0315290_10770021 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 825 | Open in IMG/M |
3300032046|Ga0315289_10739441 | Not Available | 881 | Open in IMG/M |
3300032093|Ga0315902_11071594 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 596 | Open in IMG/M |
3300032156|Ga0315295_10963376 | Not Available | 848 | Open in IMG/M |
3300032516|Ga0315273_11694962 | Not Available | 766 | Open in IMG/M |
3300034073|Ga0310130_0077227 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 992 | Open in IMG/M |
3300034116|Ga0335068_0110070 | All Organisms → Viruses → Predicted Viral | 1533 | Open in IMG/M |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Habitat | Taxonomy | Distribution |
Freshwater Lake | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake | 19.23% |
Estuarine | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine | 13.46% |
Freshwater Lake | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake | 10.58% |
Sediment | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment | 10.58% |
Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater | 7.69% |
Freshwater | Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater | 7.69% |
Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 7.69% |
Deep Subsurface | Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface | 4.81% |
Freshwater | Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater | 2.88% |
Freshwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment | 1.92% |
Estuary Water | Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water | 1.92% |
Freshwater Lentic | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic | 0.96% |
Freshwater And Sediment | Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment | 0.96% |
Freshwater Lake Sediment | Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment | 0.96% |
Freshwater Lake | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake | 0.96% |
Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater | 0.96% |
Freshwater Lake Sediment | Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment | 0.96% |
Freshwater | Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater | 0.96% |
Freshwater To Marine Saline Gradient | Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient | 0.96% |
Estuarine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine | 0.96% |
Estuarine Water | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water | 0.96% |
Fracking Water | Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water | 0.96% |
Deep Subsurface Sediment | Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment | 0.96% |
Visualization |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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3300000756 | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 | Environmental | Open in IMG/M |
3300004240 | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN | Environmental | Open in IMG/M |
3300006484 | Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 | Environmental | Open in IMG/M |
3300006639 | Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 | Environmental | Open in IMG/M |
3300006802 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 | Environmental | Open in IMG/M |
3300006805 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA | Environmental | Open in IMG/M |
3300006863 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA | Environmental | Open in IMG/M |
3300007542 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG | Environmental | Open in IMG/M |
3300007555 | Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555 | Environmental | Open in IMG/M |
3300007559 | Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541 | Environmental | Open in IMG/M |
3300007636 | Estuarine microbial communities from the Columbia River estuary - metaG 1371A-3 | Environmental | Open in IMG/M |
3300007670 | Estuarine microbial communities from the Columbia River estuary - metaG 1449C-3 | Environmental | Open in IMG/M |
3300007708 | Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02 | Environmental | Open in IMG/M |
3300007972 | Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0um | Environmental | Open in IMG/M |
3300007973 | Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um | Environmental | Open in IMG/M |
3300008450 | Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs | Environmental | Open in IMG/M |
3300008999 | Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545 | Environmental | Open in IMG/M |
3300009009 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015 | Environmental | Open in IMG/M |
3300009026 | Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 | Environmental | Open in IMG/M |
3300009056 | Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3 | Environmental | Open in IMG/M |
3300009152 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG | Environmental | Open in IMG/M |
3300009155 | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG | Environmental | Open in IMG/M |
3300009160 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG | Environmental | Open in IMG/M |
3300009161 | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG | Environmental | Open in IMG/M |
3300009163 | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG | Environmental | Open in IMG/M |
3300009164 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG | Environmental | Open in IMG/M |
3300009168 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 | Environmental | Open in IMG/M |
3300009180 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG | Environmental | Open in IMG/M |
3300009194 | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT | Environmental | Open in IMG/M |
3300010160 | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG | Environmental | Open in IMG/M |
3300010334 | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2) | Environmental | Open in IMG/M |
3300010354 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA | Environmental | Open in IMG/M |
3300010885 | northern Canada Lakes Co-assembly | Environmental | Open in IMG/M |
3300012665 | Freshwater microbial communities from Talbot River, Ontario, Canada - S11 | Environmental | Open in IMG/M |
3300013127 (restricted) | Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cm | Environmental | Open in IMG/M |
3300013128 (restricted) | Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 69cm | Environmental | Open in IMG/M |
3300013133 (restricted) | Sediment microbial communities from Lake Kivu, Rwanda - Sediment s1_kivu2a2 | Environmental | Open in IMG/M |
3300017716 | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D | Environmental | Open in IMG/M |
3300017736 | Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N | Environmental | Open in IMG/M |
3300017747 | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N | Environmental | Open in IMG/M |
3300017766 | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D | Environmental | Open in IMG/M |
3300017777 | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N | Environmental | Open in IMG/M |
3300020048 | Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915 | Environmental | Open in IMG/M |
3300020151 | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1 | Environmental | Open in IMG/M |
3300021328 | Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R877 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300021963 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D | Environmental | Open in IMG/M |
3300022179 | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N | Environmental | Open in IMG/M |
3300024298 | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepC_8d | Environmental | Open in IMG/M |
3300024351 | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_0h | Environmental | Open in IMG/M |
3300024356 | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepC_8d | Environmental | Open in IMG/M |
3300024495 | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_8d | Environmental | Open in IMG/M |
3300025896 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
3300026455 | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepC_8h | Environmental | Open in IMG/M |
3300027196 | Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545 (SPAdes) | Environmental | Open in IMG/M |
3300027206 | Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02 (SPAdes) | Environmental | Open in IMG/M |
3300027213 | Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3 (SPAdes) | Environmental | Open in IMG/M |
3300027320 | Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 (SPAdes) | Environmental | Open in IMG/M |
3300027396 | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_8h | Environmental | Open in IMG/M |
3300027659 | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes) | Environmental | Open in IMG/M |
3300027764 | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes) | Environmental | Open in IMG/M |
3300027770 | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes) | Environmental | Open in IMG/M |
3300027804 | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes) | Environmental | Open in IMG/M |
3300027899 | Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes) | Environmental | Open in IMG/M |
3300027973 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes) | Environmental | Open in IMG/M |
3300027974 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG (SPAdes) | Environmental | Open in IMG/M |
3300028025 | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC | Environmental | Open in IMG/M |
3300028103 | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepC_8d | Environmental | Open in IMG/M |
3300031746 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20 | Environmental | Open in IMG/M |
3300031834 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0 | Environmental | Open in IMG/M |
3300031951 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120 | Environmental | Open in IMG/M |
3300031997 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0 | Environmental | Open in IMG/M |
3300032046 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40 | Environmental | Open in IMG/M |
3300032050 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122 | Environmental | Open in IMG/M |
3300032093 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117 | Environmental | Open in IMG/M |
3300032156 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0 | Environmental | Open in IMG/M |
3300032516 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0 | Environmental | Open in IMG/M |
3300033995 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056 | Environmental | Open in IMG/M |
3300034013 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034 | Environmental | Open in IMG/M |
3300034062 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045 | Environmental | Open in IMG/M |
3300034073 | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL | Environmental | Open in IMG/M |
3300034092 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069 | Environmental | Open in IMG/M |
3300034102 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112 | Environmental | Open in IMG/M |
3300034106 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131 | Environmental | Open in IMG/M |
3300034116 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR | Environmental | Open in IMG/M |
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12421J11937_100889781 | 3300000756 | Freshwater And Sediment | MAYEPAVIEQWIYETLSGDATLLGLLAPNNEPNGFQMGIYNTIAPQ |
Ga0007787_101556744 | 3300004240 | Freshwater Lake | MAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMSVYNTIAPQVDPISRKQPITP |
Ga0070744_101531772 | 3300006484 | Estuarine | MAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSR |
Ga0079301_12380402 | 3300006639 | Deep Subsurface | MAFEPAVIEQWIYETLTGDSTLMGLLAPNNKPSGFQMSVYNTIAPQIDPISRKQPITPYIVFDRAGNAGQDQDTICG |
Ga0070749_102725843 | 3300006802 | Aqueous | MAYEPAVIEQWIYETLSGDATLSGLLAIDNKPDGYQMGIYNTVAPQLDPISSKPVQVPYVVFSRAGAGSDDEDTLCGGRAFTYPN |
Ga0070749_102780801 | 3300006802 | Aqueous | MSYEIPTIDQWIYETLSGDATLLGLLAPDNKPNGYQQS |
Ga0070749_104214691 | 3300006802 | Aqueous | MAFEPAVIEQWIYETLTGDSTLMGLLAPDNKPNGFQMSVYNTIAPQVDPISRKQPITPYVVFDRAGN |
Ga0070749_105026202 | 3300006802 | Aqueous | MSYEIPTIDQWIYETLTGDATLAELLAPDNKPNGYQMGIYNSVAPQIDPISRKQVQVPYVVFSSTSQTVV |
Ga0075464_102616861 | 3300006805 | Aqueous | MAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMAIYNTIAPQIDPISRKQPVTPYVVFDRAGSAGQDQ |
Ga0075459_10049504 | 3300006863 | Aqueous | MAFEPAVIEQWIYETLTGDATLMGLLAPDNKPNGFQMAVYNTIAPQIDPISRKQPITPYVVFDRAGN |
Ga0099846_13499232 | 3300007542 | Aqueous | MAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPISRRPVQVPYVVFSRAGASGDDEDTLCGARVF |
Ga0102817_10415101 | 3300007555 | Estuarine | MSYELPTIDQWIYETLTGDATLLGLLAPNNEPNGYQMGIYNAVAPQVDPISRRPVQVPYVVFTSASQAVLERSLCN |
Ga0102817_10483501 | 3300007555 | Estuarine | MAYEPAVIEQWIYETLSGDATLLGLLAPNNEPNGFQMGIYNTVAPQTDPVSRRPVQVPYVVFSRAGASGDDEDALC |
Ga0102828_11923901 | 3300007559 | Estuarine | MAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGFQMGIYNTVAPQTDPVSRRPVQVPYV |
Ga0102856_10197713 | 3300007636 | Estuarine | MAFEPAVIEQWIYDTLTGDATLMGLLAPDNKPNGFQMSIYNTIAPQIDPISRKQPVTPYVVFDRAGSA |
Ga0102862_11662192 | 3300007670 | Estuarine | MAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGFQ |
Ga0102859_10163931 | 3300007708 | Estuarine | MAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGFQMGIYNTVAPQTDPVSRRPVQVPYVVFSRAG |
Ga0105745_12159302 | 3300007972 | Estuary Water | MAYEQAVIEQWIYETLSGDATLLGLLAPDNQPNGFQMGIYNTVAPQTDPISRRPVQVPYVVFSRAGA |
Ga0105746_12644542 | 3300007973 | Estuary Water | MAFEPAVIEQWIYETLTGDATLMGLLAPDNKPNGFQMAIYNTIAPQIDPISRKQPVTPYVVFDRA |
Ga0114880_10169546 | 3300008450 | Freshwater Lake | MAFEPAVIEQWIYETLTGDATLMGLLAPDNKPNGFQMAVYNTIAPQIDPISRKQP |
Ga0102816_12246562 | 3300008999 | Estuarine | MAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSRRPVQVPYVVFSRAGASGEDEDTMCGARVFPY |
Ga0105105_101355944 | 3300009009 | Freshwater Sediment | MAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMSVYNTIAPQIDPI |
Ga0102829_11977762 | 3300009026 | Estuarine | MAYEPAVIEQWIYETLSGDATLLGLLAPNNEPNGFQMGIYNTVAPQTDPVSRRPVQVPYVVF |
Ga0102860_10737571 | 3300009056 | Estuarine | MAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGFQMGIYNTVAPQTDPVSRKPVQ |
Ga0114980_103272121 | 3300009152 | Freshwater Lake | MAFEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSR |
Ga0114980_104480551 | 3300009152 | Freshwater Lake | MAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPVS |
Ga0114968_104338271 | 3300009155 | Freshwater Lake | MAFEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQVDPVSRRP |
Ga0114968_105277892 | 3300009155 | Freshwater Lake | MAYEPAVIEQWIYETLSGDVTLMDLLSTSNQPSGYQQGIYNTVAPQVDPVSRRPPQLPYVVFSRAGAS |
Ga0114981_103518221 | 3300009160 | Freshwater Lake | MAFEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQ |
Ga0114981_106366221 | 3300009160 | Freshwater Lake | MAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGYQMSIYNTVAPQVDPVSRK |
Ga0114966_107998252 | 3300009161 | Freshwater Lake | MAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGYQMGIYNTVAPQTDPVSRRPPQLPYVVFSRAGASGDDE |
Ga0114970_100709721 | 3300009163 | Freshwater Lake | MAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMGVYNTIAPQADPVSRKQPITPYIVFDRAGN |
Ga0114970_101872614 | 3300009163 | Freshwater Lake | MAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGYQMSIYNTV |
Ga0114975_101181164 | 3300009164 | Freshwater Lake | MAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGYQMSIYNTVAPQTDPV |
Ga0105104_106557862 | 3300009168 | Freshwater Sediment | MAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMAIYNTIAPQI |
Ga0114979_106969191 | 3300009180 | Freshwater Lake | MAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSRKPVQVPYVVFSRAGASGDDEDTLCGARV |
Ga0114983_10890533 | 3300009194 | Deep Subsurface | MAYEPAVIEQWIYETLSGDATLLGLLAPNNEPNGFQ |
Ga0114983_11170632 | 3300009194 | Deep Subsurface | MAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGYQMSIYNTVAPQTDPVSRRPVQVPYVVFGRAGASGDDEDTLCGARVFTFPN |
Ga0114983_11319282 | 3300009194 | Deep Subsurface | MAFEPAVIEQWIYETLSGDVTLMGLLAPDNRPNGYQMGIYNTVAPQSDPISRRPVQVPYVVFSRAG |
Ga0114983_11379542 | 3300009194 | Deep Subsurface | MAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMGVYNTIAPQTDPISRKQPVTPYIVFDRAGNAGQDQDVLCGS |
Ga0114967_104455401 | 3300010160 | Freshwater Lake | MAFEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPISRRP |
Ga0136644_100855995 | 3300010334 | Freshwater Lake | MAFEPAVIEQWIYETLSGDVTLMDLLSTSNQPSGYQQGIYNTTAPQVDPVSRRPPQLPYV |
Ga0129333_115516911 | 3300010354 | Freshwater To Marine Saline Gradient | MAYEPAVIEQWIYETLSGDATLSGLLAIDNKPDGYQMGIYN |
Ga0133913_119425581 | 3300010885 | Freshwater Lake | MAYEPAVIEQWIYETLSGDVTLMDLLSTSNQPSGYQQGIYNTVAPQ |
Ga0157210_10336441 | 3300012665 | Freshwater | MAYEPAVIEQWIYETLSGDVTLLGLLAPNNEPNGFQMGIYNTVAPQTDPISRRPVQVPYVVFSRAGASGDD |
(restricted) Ga0172365_108738882 | 3300013127 | Sediment | MAFEPAVIEQWIYETLTGDATLMGLLAPDNKPNGFQMSVYNTIAPQIDPVSRKQPV |
(restricted) Ga0172366_107946341 | 3300013128 | Sediment | MAFEPAVIEQWIYETLTGDATLMGLLAPDNKPNGFQMSVYNTIAPQIDPVSRKQPVTPYVVFDRAG |
(restricted) Ga0172362_108162082 | 3300013133 | Sediment | MAFEPAMIEQWIYETLTGDATLMGLLAPDNKPNGFQMSVYNTIAPQIDPVSRKQ |
Ga0181350_10472223 | 3300017716 | Freshwater Lake | MAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGFQMGIYNTVAPQTDPISRRPVQVPYVVFSRAGASGDDEDTLC |
Ga0181365_10740773 | 3300017736 | Freshwater Lake | MAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMGVYNTIAPQTD |
Ga0181352_10238111 | 3300017747 | Freshwater Lake | MAFEPAVIEQWIYETLTGDSTLMGLLAPDNKPNGFQMAVYNTIAPQ |
Ga0181343_11106061 | 3300017766 | Freshwater Lake | MAYEPAVIEQWIYETLSGDSTLSGLLAVDNKPDGYQMGIYNTVAPQIDPISRKPVQVPYVVFSRAGASGEDEDTLCGGRAFT |
Ga0181343_11325823 | 3300017766 | Freshwater Lake | MAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGYQMSIYNTVAPQTDPISRRP |
Ga0181357_13320981 | 3300017777 | Freshwater Lake | MAFEPAVIEQWIYETLSGDATLLGLLAPNNQPNGYQMSIYNTVAPQTDPISRRP |
Ga0207193_17267852 | 3300020048 | Freshwater Lake Sediment | MAYEPAVIEQWIYETLSGDATLLGLLAPDNKPDGYQMGIYNTVAPQ |
Ga0211736_105933723 | 3300020151 | Freshwater | MSFEIPTIDQWIYETLSGDATLLGLLAPDNRPNGYQQSIYNSVAPQVDVVSRKPVQAPYVVFTVDSQAT |
Ga0210298_12449783 | 3300021328 | Estuarine | MAFEPAVIEQWIYETLSGDATLLGLLAPDNKPNGFQMGIYNTVAPQTDPVSRK |
Ga0222712_106208611 | 3300021963 | Estuarine Water | MAFEPAVIEQWIYDTLTGDVTLMGLLAPDNKPNGFQMGVYNTIAPQTDPVSRKQPITPYIVFDRAGNAGQD |
Ga0181353_10347224 | 3300022179 | Freshwater Lake | MAFEPAVIEQWIYETLTGDATLMGLLAPDNKPNGFQMGIYNTIAPQIDPISRKQPITPYVVFDRAGNAG |
Ga0181353_11031841 | 3300022179 | Freshwater Lake | MAFEPAVIEQWIYETLTGDATLMGLLAPDNKPNGFQMAVYNTIAPQIDPISRKQPI |
Ga0255178_10371771 | 3300024298 | Freshwater | MAFEPAVIEQWIYETLTGDSTLMGLLAPDNKPSGFQMSVYNTIAPQIDPISRKQPITPYIVFDR |
Ga0255141_10634422 | 3300024351 | Freshwater | MAYEPAVIEQWLYETLSNDATLQGLLAVDNKPNGYQQGIYNT |
Ga0255141_10711321 | 3300024351 | Freshwater | MAYEPAVIEQWLYETLSNDVTLQGLLAVDNKPNGYQQG |
Ga0255169_10385931 | 3300024356 | Freshwater | MAYEPAVIEQWLYETLSNDATLQGLLAVDNKPNGYQQGIYNTVAPQLDPISRKPVQVPYVVFDRAGNAGQDQDVIC |
Ga0255164_10741331 | 3300024495 | Freshwater | MAYEPAVIEQWLYETLSNDATLQGLLAVDNKPNGYQQGIYNTVAPQLDPISRKPVQVPYVVFDRAGNAGQDQDVICGS |
Ga0208916_101481531 | 3300025896 | Aqueous | MAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMAIYNTIAPQIDPISRKQPVTPYVVFD |
Ga0255155_10763751 | 3300026455 | Freshwater | MAFEPAVIEQWIYETLTGDSTLMGLLAPDNKPSGFQMSVYNTIAPQIDPI |
Ga0208438_10752612 | 3300027196 | Estuarine | MSYELPTIDQWIYETLTGDATLLGLLAPNNEPNGYQMGIYNAVAPQVDPISRRPVQVPYVVFTSA |
Ga0208023_10222501 | 3300027206 | Estuarine | MAFEPAVIEQWIYDTLTGDATLMGLLAPDNKPNGFQMSIYNTIAPQIDPISRKQP |
Ga0208555_10510851 | 3300027213 | Estuarine | MAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGFQMGIYNTVAPQTDPVSR |
Ga0208923_10265963 | 3300027320 | Estuarine | MAYEPAVIEQWIYETLSGDATLLGLLAPNNEPNGFQMGIYNTVAPQTDPVSRRP |
Ga0255146_11250962 | 3300027396 | Freshwater | MAFEPAVIEQWIYETLTGDSTLMGLLAPDNKPSGFQMSVYNTIAPQIDPISRKQPITPYIVFDRAGNAGQDQD |
Ga0208975_11862832 | 3300027659 | Freshwater Lentic | MAFEPAVIEQWIYETLSGDATLLGLLAPDNQPNGYQMGIYNTIAPQTDPVSRK |
Ga0209134_100905883 | 3300027764 | Freshwater Lake | MAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMAIYNTIAPQIDPISRKQPVTPYVVF |
Ga0209086_102427413 | 3300027770 | Freshwater Lake | MAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPISRRPVQVPYVVFSR |
Ga0209358_102227621 | 3300027804 | Freshwater Lake | MAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMSVYNTIAPQVDPISRKQPITPY |
Ga0209668_107259161 | 3300027899 | Freshwater Lake Sediment | MAYEPAVIEQWIYETLSGDSTLLGLLAVDNKPDGYQMGIYNTVAPQIDP |
Ga0209298_101414501 | 3300027973 | Freshwater Lake | MAFEPAVIEQWIYETLSGDATLLGLLAPDNQPNGYQMSIYNTVAPQTDPVSRKPVQVPYVVFS |
Ga0209298_102426221 | 3300027973 | Freshwater Lake | MAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSRKPVQVPYVVFSRAGASGDDEDTV |
Ga0209299_10648701 | 3300027974 | Freshwater Lake | MAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGYQMSIYNTVAPQVD |
Ga0209299_11982002 | 3300027974 | Freshwater Lake | MAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSRKPVQVPYVVFSRAGASGDDEDTLCGA |
Ga0209299_13063311 | 3300027974 | Freshwater Lake | MAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMAIYNTIAPQIDPISRKQPVTPYV |
Ga0247723_11675251 | 3300028025 | Deep Subsurface Sediment | MAYEPAVIEQWIYETLSGDATLLGMLAPDNQPNGFQMGIYNTVAPQSDPISRRPVQVPYVVFSRAG |
Ga0255172_10268733 | 3300028103 | Freshwater | MAFEPAVIEQWIYETLTGDSTLMGLLAPDNKPSGFQMSVYNTIAPQIDPISRKQPITPYIVFDRAGNAGQ |
Ga0315293_106816102 | 3300031746 | Sediment | MAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSRRPVQVPYVVFSRAGASGDDEDALCGARVFTYPN |
Ga0315293_111646162 | 3300031746 | Sediment | MAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMGVYNTIAPQTDPVSRKQPVTPY |
Ga0315290_107700211 | 3300031834 | Sediment | MAYEPAVIEQWIYETLSGDTTLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSRRPVQVPYVVFSR |
Ga0315904_109898682 | 3300031951 | Freshwater | MSYEIPTIDQWIYETLTGDTTLAELLAPDNKPGGYQMGIYNSVAPQIDPISRK |
Ga0315278_116076142 | 3300031997 | Sediment | MAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSRRPVQVPYVVFSRAGASG |
Ga0315289_107394411 | 3300032046 | Sediment | MAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSRRPVQVPYVVFSRAGASGDDE |
Ga0315289_111837322 | 3300032046 | Sediment | MAYEPAVIEQWIYETLSGDTTLLGLLAPNNEPNGYQMGIYNTVAPQTDPVSRRPVQVPYVVFSRAGKR |
Ga0315906_108126403 | 3300032050 | Freshwater | MAYEPAVIEQWIYETLSGDATLLGLLAPDNQPDGYQMGIYNTVAPQTDPISRRPVQV |
Ga0315902_110715941 | 3300032093 | Freshwater | MAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPSGFQMGVYNTIAPQTDPISRKQPITPYI |
Ga0315295_109633761 | 3300032156 | Sediment | MAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGI |
Ga0315273_116949622 | 3300032516 | Sediment | MAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSRRPVQVPYVVFSRAGASGDDEDALCGARVFTYPNYR |
Ga0335003_0242773_2_211 | 3300033995 | Freshwater | MAYEPAVIEQWIYETLSGDATLLGLLAPDNKPDGYQMGIYNTVAPQTDPVSRKPVQVPYVVFSRAGASGD |
Ga0334991_0379794_3_161 | 3300034013 | Freshwater | MAYEPAVIEQWIYETLSGDATLLGLLAPDNKPDGYQMGIYNTVAPQTDPVSRK |
Ga0334995_0687533_2_133 | 3300034062 | Freshwater | MAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVA |
Ga0310130_0077227_795_992 | 3300034073 | Fracking Water | MAFEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTVAPQIDPISRKPVQVPYVVFSRAG |
Ga0335010_0194825_3_107 | 3300034092 | Freshwater | MAYEPAVIEQWIYETLSGDATLLGLLAPDNKPDGY |
Ga0335029_0565359_2_193 | 3300034102 | Freshwater | MAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMSIYNTIAPQIDPISRKQPVTPYVVFDR |
Ga0335036_0630621_424_645 | 3300034106 | Freshwater | MAFEPAVIEQWIYDTLTGDATLMGLLAPDNKPNGFQMSIYNTIAPQIDPISRKQPVTPYVVFDRAGSAGQDQDT |
Ga0335068_0110070_1308_1532 | 3300034116 | Freshwater | MSYELPTIDQWIYETLTGDATLLGLLAPNNEPNGYQMGIYNAVAPQVDPISRRPVQVPYVVFTSASQAVLERSLC |
Ga0335068_0391192_2_130 | 3300034116 | Freshwater | MAYEPAVIEQWIYETLSGDATLLGLLAVDNKPDGYQMGIYNTV |
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