NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F097360

Metagenome / Metatranscriptome Family F097360

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F097360
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 47 residues
Representative Sequence MNLFHEAKKVLDKDGKVNALGPYGKQKLTGREVSTYFRRNKVKDA
Number of Associated Samples 93
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 91.43 %
% of genes near scaffold ends (potentially truncated) 97.12 %
% of genes from short scaffolds (< 2000 bps) 83.65 %
Associated GOLD sequencing projects 89
AlphaFold2 3D model prediction Yes
3D model pTM-score0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (50.962 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine
(17.308 % of family members)
Environment Ontology (ENVO) Unclassified
(58.654 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(94.231 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 31.51%    β-sheet: 2.74%    Coil/Unstructured: 65.75%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF13671AAA_33 2.88
PF03692CxxCxxCC 2.88
PF00596Aldolase_II 0.96
PF00145DNA_methylase 0.96
PF00268Ribonuc_red_sm 0.96
PF11450DUF3008 0.96
PF13392HNH_3 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG0208Ribonucleotide reductase beta subunit, ferritin-like domainNucleotide transport and metabolism [F] 0.96
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 0.96

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A50.96 %
All OrganismsrootAll Organisms49.04 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000949|BBAY94_10201576Not Available536Open in IMG/M
3300000973|BBAY93_10002401All Organisms → Viruses → Predicted Viral4871Open in IMG/M
3300002033|GOS24894_10000135All Organisms → Viruses → Predicted Viral1649Open in IMG/M
3300004097|Ga0055584_100891798Not Available931Open in IMG/M
3300004457|Ga0066224_1036060All Organisms → Viruses → Predicted Viral2010Open in IMG/M
3300005599|Ga0066841_10003934All Organisms → Viruses → Predicted Viral2491Open in IMG/M
3300006026|Ga0075478_10181334All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon648Open in IMG/M
3300006480|Ga0100226_1557226Not Available539Open in IMG/M
3300006565|Ga0100228_1284811All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED247653Open in IMG/M
3300006793|Ga0098055_1074080All Organisms → Viruses → Predicted Viral1345Open in IMG/M
3300007041|Ga0101669_128488Not Available537Open in IMG/M
3300007862|Ga0105737_1066244Not Available887Open in IMG/M
3300007863|Ga0105744_1038772All Organisms → Viruses → Predicted Viral1180Open in IMG/M
3300007955|Ga0105740_1006092All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium1451Open in IMG/M
3300007955|Ga0105740_1045473Not Available683Open in IMG/M
3300008735|Ga0115657_1152850All Organisms → Viruses → Predicted Viral1294Open in IMG/M
3300009420|Ga0114994_11101875Not Available512Open in IMG/M
3300009426|Ga0115547_1299839Not Available501Open in IMG/M
3300009436|Ga0115008_10584143All Organisms → cellular organisms → Bacteria803Open in IMG/M
3300009436|Ga0115008_11395875Not Available538Open in IMG/M
3300009438|Ga0115559_1292290All Organisms → cellular organisms → Bacteria572Open in IMG/M
3300009449|Ga0115558_1215153Not Available787Open in IMG/M
3300009507|Ga0115572_10164683Not Available1295Open in IMG/M
3300009550|Ga0115013_10651923Not Available709Open in IMG/M
3300009550|Ga0115013_11337260Not Available529Open in IMG/M
3300009593|Ga0115011_11439987Not Available606Open in IMG/M
3300009606|Ga0115102_10281586All Organisms → Viruses → Predicted Viral3657Open in IMG/M
3300009705|Ga0115000_10356377All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED247938Open in IMG/M
3300009705|Ga0115000_10677555Not Available638Open in IMG/M
3300012418|Ga0138261_1760434Not Available666Open in IMG/M
3300012920|Ga0160423_10010040All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae7419Open in IMG/M
3300012920|Ga0160423_10678232Not Available696Open in IMG/M
3300012920|Ga0160423_10801091Not Available634Open in IMG/M
3300012920|Ga0160423_10844474Not Available615Open in IMG/M
3300012936|Ga0163109_10427817All Organisms → Viruses969Open in IMG/M
3300012954|Ga0163111_10528788All Organisms → Viruses → Predicted Viral1091Open in IMG/M
3300012954|Ga0163111_10551071All Organisms → Viruses → Predicted Viral1070Open in IMG/M
3300016732|Ga0182057_1015944Not Available619Open in IMG/M
3300016739|Ga0182076_1262872Not Available863Open in IMG/M
3300016748|Ga0182043_1287979All Organisms → Viruses → Predicted Viral1166Open in IMG/M
3300017713|Ga0181391_1064529Not Available849Open in IMG/M
3300017717|Ga0181404_1003200All Organisms → Viruses → Predicted Viral4588Open in IMG/M
3300017720|Ga0181383_1103272Not Available765Open in IMG/M
3300017724|Ga0181388_1128775Not Available603Open in IMG/M
3300017728|Ga0181419_1127932Not Available617Open in IMG/M
3300017742|Ga0181399_1107664All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium686Open in IMG/M
3300017743|Ga0181402_1032070All Organisms → Viruses → Predicted Viral1463Open in IMG/M
3300017755|Ga0181411_1000201Not Available20810Open in IMG/M
3300017759|Ga0181414_1026233All Organisms → Viruses → Predicted Viral1585Open in IMG/M
3300017759|Ga0181414_1108338Not Available730Open in IMG/M
3300017760|Ga0181408_1006230All Organisms → Viruses → Predicted Viral3442Open in IMG/M
3300017765|Ga0181413_1182929Not Available628Open in IMG/M
3300017782|Ga0181380_1248106Not Available591Open in IMG/M
3300017956|Ga0181580_10034349All Organisms → Viruses → Predicted Viral3906Open in IMG/M
3300017986|Ga0181569_10597124Not Available738Open in IMG/M
3300018418|Ga0181567_10468030Not Available828Open in IMG/M
3300020055|Ga0181575_10294133Not Available923Open in IMG/M
3300020247|Ga0211654_1015907All Organisms → Viruses → Predicted Viral1223Open in IMG/M
3300020312|Ga0211542_1052079Not Available755Open in IMG/M
3300020346|Ga0211607_1006416All Organisms → Viruses → Predicted Viral3258Open in IMG/M
3300020352|Ga0211505_1123267Not Available614Open in IMG/M
3300020400|Ga0211636_10214788Not Available745Open in IMG/M
3300020403|Ga0211532_10411507Not Available504Open in IMG/M
3300020404|Ga0211659_10002363Not Available10159Open in IMG/M
3300020414|Ga0211523_10414089Not Available544Open in IMG/M
3300020417|Ga0211528_10069513Not Available1480Open in IMG/M
3300020417|Ga0211528_10096855All Organisms → Viruses → Predicted Viral1202Open in IMG/M
3300020450|Ga0211641_10050131All Organisms → Viruses → Predicted Viral2206Open in IMG/M
3300020451|Ga0211473_10615569Not Available549Open in IMG/M
3300020452|Ga0211545_10394548All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8629Open in IMG/M
3300020457|Ga0211643_10119280All Organisms → Viruses → Predicted Viral1300Open in IMG/M
3300020461|Ga0211535_10601458Not Available506Open in IMG/M
3300020584|Ga0211540_1023592Not Available876Open in IMG/M
3300021335|Ga0213867_1231004Not Available604Open in IMG/M
3300021365|Ga0206123_10118697Not Available1241Open in IMG/M
3300021371|Ga0213863_10035302All Organisms → Viruses → Predicted Viral2717Open in IMG/M
3300021958|Ga0222718_10068320All Organisms → Viruses → Predicted Viral2182Open in IMG/M
3300021959|Ga0222716_10545335All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote643Open in IMG/M
3300023108|Ga0255784_10400462All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon653Open in IMG/M
3300023115|Ga0255760_10367924Not Available678Open in IMG/M
3300023701|Ga0228685_1033709All Organisms → cellular organisms → Bacteria768Open in IMG/M
3300023704|Ga0228684_1070020All Organisms → cellular organisms → Bacteria547Open in IMG/M
(restricted) 3300024261|Ga0233439_10471863All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium501Open in IMG/M
(restricted) 3300024264|Ga0233444_10477890All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote501Open in IMG/M
3300024297|Ga0228658_1023981All Organisms → Viruses → Predicted Viral1578Open in IMG/M
3300025168|Ga0209337_1323137Not Available544Open in IMG/M
3300025680|Ga0209306_1208563All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote530Open in IMG/M
3300025690|Ga0209505_1184575Not Available530Open in IMG/M
3300025816|Ga0209193_1021664All Organisms → cellular organisms → Bacteria2030Open in IMG/M
3300027233|Ga0208678_1035224Not Available1123Open in IMG/M
3300027413|Ga0208950_1093620Not Available643Open in IMG/M
3300027582|Ga0208971_1063869Not Available952Open in IMG/M
3300027709|Ga0209228_1039066All Organisms → Viruses → Predicted Viral1685Open in IMG/M
3300027753|Ga0208305_10346821Not Available514Open in IMG/M
3300027801|Ga0209091_10202080All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED247991Open in IMG/M
3300027833|Ga0209092_10011356All Organisms → cellular organisms → Bacteria6468Open in IMG/M
3300027833|Ga0209092_10369135Not Available759Open in IMG/M
3300027906|Ga0209404_10011144All Organisms → Viruses → Predicted Viral4918Open in IMG/M
3300028132|Ga0228649_1154065All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300028282|Ga0256413_1172262All Organisms → cellular organisms → Bacteria782Open in IMG/M
3300028418|Ga0228615_1078248All Organisms → cellular organisms → Bacteria939Open in IMG/M
3300029318|Ga0185543_1023638All Organisms → cellular organisms → Bacteria1425Open in IMG/M
3300031774|Ga0315331_10947701Not Available590Open in IMG/M
3300032130|Ga0315333_10261823All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon819Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine17.31%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine16.35%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater12.50%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh8.65%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater7.69%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater6.73%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine6.73%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water3.85%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine1.92%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.92%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine1.92%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater1.92%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.92%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.92%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface1.92%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.96%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous0.96%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.96%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.96%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.96%
Volcanic Co2 SeepEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep0.96%
Polar MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine0.96%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000949Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY94Host-AssociatedOpen in IMG/M
3300000973Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY93Host-AssociatedOpen in IMG/M
3300002033Marine microbial communities from the Sargasso Sea - GS000a &bEnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004457Marine viral communities from Newfoundland, Canada MC-1EnvironmentalOpen in IMG/M
3300005599Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF91AEnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006480Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0075mEnvironmentalOpen in IMG/M
3300006565Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0125mEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300007041Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', water-icEnvironmentalOpen in IMG/M
3300007862Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373A_0.2umEnvironmentalOpen in IMG/M
3300007863Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2umEnvironmentalOpen in IMG/M
3300007955Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373B_3.0umEnvironmentalOpen in IMG/M
3300008735Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2umEnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009426Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420EnvironmentalOpen in IMG/M
3300009436Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M MetagenomeEnvironmentalOpen in IMG/M
3300009438Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506EnvironmentalOpen in IMG/M
3300009449Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426EnvironmentalOpen in IMG/M
3300009507Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607EnvironmentalOpen in IMG/M
3300009550Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 MetagenomeEnvironmentalOpen in IMG/M
3300009593Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 MetagenomeEnvironmentalOpen in IMG/M
3300009606Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009705Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128EnvironmentalOpen in IMG/M
3300012418Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 72hr light incubation - RNA12.A_72.20151113 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300012936Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaGEnvironmentalOpen in IMG/M
3300012954Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaGEnvironmentalOpen in IMG/M
3300016732Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101403AT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016739Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071408BT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016748Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011502CT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017713Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11EnvironmentalOpen in IMG/M
3300017717Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25EnvironmentalOpen in IMG/M
3300017720Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23EnvironmentalOpen in IMG/M
3300017724Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17EnvironmentalOpen in IMG/M
3300017728Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24EnvironmentalOpen in IMG/M
3300017742Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21EnvironmentalOpen in IMG/M
3300017743Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17EnvironmentalOpen in IMG/M
3300017755Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09EnvironmentalOpen in IMG/M
3300017759Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28EnvironmentalOpen in IMG/M
3300017760Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16EnvironmentalOpen in IMG/M
3300017765Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28EnvironmentalOpen in IMG/M
3300017782Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19EnvironmentalOpen in IMG/M
3300017956Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017986Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018418Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020055Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101411CT metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020247Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)EnvironmentalOpen in IMG/M
3300020312Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX556125-ERR598977)EnvironmentalOpen in IMG/M
3300020346Marine microbial communities from Tara Oceans - TARA_B100000674 (ERX556057-ERR599069)EnvironmentalOpen in IMG/M
3300020352Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556084-ERR599144)EnvironmentalOpen in IMG/M
3300020400Marine microbial communities from Tara Oceans - TARA_B100001115 (ERX555947-ERR598992)EnvironmentalOpen in IMG/M
3300020403Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)EnvironmentalOpen in IMG/M
3300020404Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)EnvironmentalOpen in IMG/M
3300020414Marine microbial communities from Tara Oceans - TARA_B100000035 (ERX556019-ERR599028)EnvironmentalOpen in IMG/M
3300020417Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)EnvironmentalOpen in IMG/M
3300020450Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)EnvironmentalOpen in IMG/M
3300020451Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)EnvironmentalOpen in IMG/M
3300020452Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)EnvironmentalOpen in IMG/M
3300020457Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)EnvironmentalOpen in IMG/M
3300020461Marine microbial communities from Tara Oceans - TARA_B100000401 (ERX556127-ERR599150)EnvironmentalOpen in IMG/M
3300020584Marine microbial communities from Tara Oceans - TARA_B100000282 (ERX555983-ERR599011)EnvironmentalOpen in IMG/M
3300021335Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540EnvironmentalOpen in IMG/M
3300021365Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1EnvironmentalOpen in IMG/M
3300021371Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497EnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300023108Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaGEnvironmentalOpen in IMG/M
3300023115Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaGEnvironmentalOpen in IMG/M
3300023701Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 47R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023704Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 35R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024261 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MGEnvironmentalOpen in IMG/M
3300024264 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MGEnvironmentalOpen in IMG/M
3300024297Seawater microbial communities from Monterey Bay, California, United States - 71DEnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025680Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328 (SPAdes)EnvironmentalOpen in IMG/M
3300025690Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331 (SPAdes)EnvironmentalOpen in IMG/M
3300025816Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)EnvironmentalOpen in IMG/M
3300027233Estuarine microbial communities from the Columbia River estuary - metaG 1550B-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027413Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_54_BLW_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027582Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_18_M0_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027709Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_150m (SPAdes)EnvironmentalOpen in IMG/M
3300027753Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 (SPAdes)EnvironmentalOpen in IMG/M
3300027801Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)EnvironmentalOpen in IMG/M
3300027833Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300027906Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300028132Seawater microbial communities from Monterey Bay, California, United States - 61DEnvironmentalOpen in IMG/M
3300028282Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_77 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028418Seawater microbial communities from Monterey Bay, California, United States - 16DEnvironmentalOpen in IMG/M
3300029318Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289EnvironmentalOpen in IMG/M
3300031774Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915EnvironmentalOpen in IMG/M
3300032130Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 34915EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
BBAY94_1020157613300000949Macroalgal SurfaceMNLFAEAKNVLDKDGKVNALGPYGKQKLTGREMSTYFRRNKVNDAT
BBAY93_1000240113300000973Macroalgal SurfaceMNLFQELKEKKILDKDGKVDALGPYGKQKLTGQEVASYFKKNKVSDAKVK
GOS24894_1000013543300002033MarineMNLFQEAKKVLDKDGKVNALGPYGKSKLTGKEVSQYFKKNPVKDKEVKK
Ga0055584_10089179833300004097Pelagic MarineMNLFHEAKKVLDKDGKVNPLGPYGKMKLTGQEVTNYFRKNKVSDAKVKRAVEV
Ga0066224_103606043300004457MarineMNLFHEAKKVLDKDGKVNPLGPYGKMKLTGQEVANYFRKNKVSDAKVKKAVEVALDMSGA
Ga0066841_1000393453300005599MarineMNLFQEAKNILDKDGKVNALGPYGKGKLTGREVSAYFRRNKVSDPEI
Ga0075478_1018133433300006026AqueousMNIFQEAKQVLDKDGKVNPLGPYGKSKLTGSEVASYFRKHPVRD
Ga0100226_155722623300006480MarineMNLFQESKNILDKDGKVNPLGPYGRQKLTGRETSTYFRR
Ga0100228_128481123300006565MarineVNIFQEAKQILDKDGKVNALGPYGKGKLTGREVSTYFRRNKVK
Ga0098055_107408033300006793MarineMNLFAEAKKILDKDGKVNPLGPYGKMKLTGREVSAYFRRNKISDPQI
Ga0101669_12848823300007041Volcanic Co2 SeepMNLFQESKNILDKDGKVNPLGPYGRQKLTGREMSTYFRRNKVKDAKLRKAVEVAL
Ga0105737_106624413300007862Estuary WaterMNLFQEAKSVLDKDGKVNPLGPYGKMKLTGREVSAYFR
Ga0105744_103877243300007863Estuary WaterMNHFRPNIFQELKEKKVLDKDGKVDALGAYGKMKLTGSEVAQYFKKNKVTDAKV
Ga0105740_100609213300007955Estuary WaterMNLFQEAKSVLDKDGKVNPLGPYGKMKLTGREVSAYFRRNKISDPQV
Ga0105740_104547323300007955Estuary WaterMNLFHEAKKVLDKDGKVNPLGPYGKMKLTGQEVANYFRKNKVSDAKVKKAVEVALDM
Ga0115657_115285033300008735MarineMNLFHEAKKVLDKDGKVNALGPYGKQKLTGREVSTYFRRNKVKDA
Ga0114994_1110187523300009420MarineMNIFQEAKAVLDKDGKVNPLGPFGKQKLTGREVST
Ga0115547_129983913300009426Pelagic MarineMNLFHEAKKVLDKDGKVNPLGPYGKMKLTGQEVANYFRKNKVSDAKVKRAVEV
Ga0115008_1058414313300009436MarineMNHFQPNIFQELKEKKVLDKDGKVDALGAYGKMKLTGQEIAAYFKKNKV
Ga0115008_1139587523300009436MarineMNLFAEAKKVLDKDGKVNPLGPYGKQKLTGREISTYFRRNKITDPQ
Ga0115559_129229033300009438Pelagic MarineMNLFYEAKKVLDKDGKVNPLGPYGKQKLTGREIQVYFRRNKVKDK
Ga0115558_121515323300009449Pelagic MarineMNLFHEAKKVLDKDGKVNPLGPYGKMKLTGREVSTYFRRNKVSDPEVKKAVEVA
Ga0115572_1016468313300009507Pelagic MarineMNLFHEAKKVLDKDGKVNPLGPYGKMKLTGQEVANYFRKNKVSDAKVKRAVEVALDMSG
Ga0115013_1065192323300009550MarineMNLFHESKKILDKDGKVNPLGPYGKQKLTGREISTYFRRNKVKDPQIK
Ga0115013_1133726013300009550MarineMNLFHESKKILDKDGKVNPLGPYGKQKLTGREVSTYF
Ga0115011_1143998723300009593MarineMNIWQDLKERKVLDKDGKVDALGPYGKQKLTGREISAYFKKN
Ga0115102_1028158623300009606MarineMNLFHEAKKVLDKDGKVNPLGPYGKMKLTGREVSTYFRRTKVVTPKSRKQ*
Ga0115000_1035637713300009705MarineMNIFQEAKSVLDKDGKVNPLGPYGKQKLTGREISTYFRRNKITDPEIKKAVEVAL
Ga0115000_1067755513300009705MarineMNIFQEAKTILDKDGKVNPLGPFGKQKLTGREVSTYFRRNKITDPEIKKAVEVALDL
Ga0138261_176043423300012418Polar MarineMLSTGIFNEAKQILDKDGKVNPLGPYGKQKLTGREVATYFRRHKVTDPQVKKAIEVALDMGGAMD
Ga0160423_10010040133300012920Surface SeawaterMNLFQESKNVLDKDGKVNALGPYGRQKLTGREMSTYFRRNKVKDAKIK
Ga0160423_1067823213300012920Surface SeawaterMNIFHESKKVLDKDGKVNPLGPYGKQKLTGQEISQYFKKHKLTGINNRLKKAIEVALDLG
Ga0160423_1080109113300012920Surface SeawaterMNLFQEAKEVLTKDGKVNPLGPYGRSKLTGREVATYFRNNKVK
Ga0160423_1084447423300012920Surface SeawaterMNLFHEAKSVLDKDGKVNPLGPYGRQKLTGREVSTYFRRNPVKDAQIKKAVEVALDLQG
Ga0163109_1042781733300012936Surface SeawaterMNLFQEAKEVLTKDGKVNPLGPYGRSKLTGREVATYFRNNKVKDAKIKKA
Ga0163111_1052878813300012954Surface SeawaterMNLFQELKERKVLDKDGKVDALGPYGKSKLTGQEVAQYFKKNK
Ga0163111_1055107133300012954Surface SeawaterMNIFQELKEKKDVLTKDGKVDALGPYGRQKLTGQEVAQYFKKNKVKDAKIKKA
Ga0182057_101594413300016732Salt MarshMNIFQESKNILDKDGKVNPLGPYGKSKLTGREISTYFRRNKVKDA
Ga0182076_126287213300016739Salt MarshMNLFYEAKQVLDKDGKVNPLGPYDKMKLTGQEVASYFRKNKVSDPQVKKAVEVAL
Ga0182043_128797913300016748Salt MarshMNLFYEAKKVLDKDGKVNALGPYGKQKLTGREIQTYFRRNKVK
Ga0181391_106452933300017713SeawaterMNLFHEAKKVLDTDGKVNPLGPYGRQKLTGREISTYFRRNPVKDANLKKA
Ga0181404_100320083300017717SeawaterMNLFHEAKKVLDKDGKVNPLGPYGKQKLTGREVSTYFRRNKVSDPEVKKAVEVALD
Ga0181383_110327213300017720SeawaterMNLFYEAKKVLDKDGKVNPLGPYGKQKLTGREIQVYFRRNKVKDKVVKKAVE
Ga0181388_112877513300017724SeawaterMNLFQEAKSVLDKDGKVNPLGPYGKQKLTGRETSAYFRRNKVKPGDIKKAVEVALDL
Ga0181419_112793213300017728SeawaterMNLFHEAKKVLDKDGKVNPLGPYGKQKLTGREVSTYFRRNKVSPF
Ga0181399_110766413300017742SeawaterMNHFRPNIFQELKEKKVLDKDGKVDALGAYGKMKLTGSEVAQYFKKNKVTDAKVKKAVEV
Ga0181402_103207043300017743SeawaterMNLFYEAKKVLDKDGKVNPLGPYGKQKLTGREIQVY
Ga0181411_1000201313300017755SeawaterMKLFHEAKKVLDKDGKVNPLGPYGKQKLTGREVSTYFRRNKVSDPEVKKA
Ga0181414_102623313300017759SeawaterMNLFQEAKSVLDKDGKVNPLGPYGKQKLTGRETSAYF
Ga0181414_110833823300017759SeawaterMNLFHEAKKVLDKDGKVNPLGPYGKMKLTGQEVANYFRKNKVS
Ga0181408_100623013300017760SeawaterMNLFQQIKERKILDKDGKVDALGPYGKSKLTGQEVANYFKKNKVKDPKIKKAVEVA
Ga0181413_118292923300017765SeawaterMNLFQEAKSVLDKDGKVNPLGPYGKQKLTGRETSAYFRRN
Ga0181380_124810613300017782SeawaterMNLFHEAKKVLDKDGKVNPLGPYGKMKLTGQEVAN
Ga0181580_1003434913300017956Salt MarshMNLFYEAKQVLDKDGKVNPLGPYGKMKLTGQEVAS
Ga0181569_1059712413300017986Salt MarshMNLFYEAKKVLDKDGKVNALGPYGKSKLTGREVSQYFKKNKVSDPQVKKAVEVALDLGG
Ga0181567_1046803013300018418Salt MarshMNLFYEAKKVLDKDGKVNALGPYGKSKLTGREVSQYFKKNKVSDPQVK
Ga0181575_1029413333300020055Salt MarshMNLFQELKEKKVLDKDGKVDALGPYGKQKLTGREISTYFRKNK
Ga0211654_101590713300020247MarineMNLFQQIKERKILDKDGKVDALGPYGKSKLTGQEVANYFKKYKIK
Ga0211542_105207913300020312MarineMNLFQEAKEVLDKSGKVNPLGPYGRQKLTGREVATYFRRNKVKDAKLKRAVEV
Ga0211607_100641613300020346MarineMNLFQESKNILDKDGKVNPLGPYGRSKLTGRETSTYFRRNKVKDAKVRRAVEV
Ga0211505_112326723300020352MarineMNLFQEAKSVLDKDGKVNPLGPYGKQKLTGRETSAYFRRNKVKP
Ga0211636_1021478813300020400MarineMNLFHEAKKILDKDGKVNPLGPYGKQKLTGREISTYFRRNKVKDP
Ga0211532_1041150713300020403MarineMNIFQELKERKVLDKDGKVDALGPYGKSKLTGQEVAQYFKKHKV
Ga0211659_1000236313300020404MarineMNLFQEAKEVLDKSGKVNPLGPYGRSKLTGREVAT
Ga0211523_1041408913300020414MarineMNIFHESKKVLDKDGKVNPLGPYGKQKLTGSEISQY
Ga0211528_1006951313300020417MarineMNLFQEAKDILDKDGKVNALGPYGRQKLTGREMSTYFRRNKVKDAKIKKAVE
Ga0211528_1009685513300020417MarineMHFQGNVFQDLKEKKVLDKDGKVDALGPYGKSKLTGMEVNAYFKKNKVSD
Ga0211641_1005013113300020450MarineMNLFQEAKEVLDKNGKVNPLGPYGRSKLTGREVAA
Ga0211473_1061556913300020451MarineMNLFHEAKKVLDKDGKVNALGPYGKSKLTGKEVSQYFKKNPVKDKEV
Ga0211545_1039454813300020452MarineMHFQGNIFQELKEKKVLDKDGKVDALGPYGKSKLTGMEVNNYFKKNKVKDAKVKKAV
Ga0211643_1011928013300020457MarineMNLFQELKERKVLDKDGKVDALGPYGKSKLTGQEVAQYFKKNKVKDAKIKKAVE
Ga0211535_1060145813300020461MarineMNLFQEAKEVLDKSGKVNPLGPYGRQKLTGREVATYFRRNKVKDAKLRRA
Ga0211540_102359213300020584MarineMNLFQEAKSILTKDGKVNPLGPYGRQKLTGREVATYFRNNKDIPKNRIRK
Ga0213867_123100413300021335SeawaterMNLFSEAKNVLDKDGKVNALGPYGKQKLTGREMSTYFRRNKVNDATIKKAVEVA
Ga0206123_1011869713300021365SeawaterMNLFAEAKKVLDKDGKVNPLGPYGKMKLTGREVSAYFR
Ga0213863_1003530273300021371SeawaterMNLFYEAKKVLDKDGKVNALGPYGKQKLTGREIPT
Ga0222718_1006832013300021958Estuarine WaterMNLFYEAKKVLDKDGKVNPLGPYGKQKLTGREIQVYFRRNKVKDKVIKKAVE
Ga0222716_1054533523300021959Estuarine WaterMNLFQEAKSVLDKDGKVNPLGPYGKMKLTGREVSAYFRRNKIS
Ga0255784_1040046213300023108Salt MarshMNLFQEAKQVLDKDGKVNALGPYGKQKLTGREISAYFRQNPVKDQKLKN
Ga0255760_1036792433300023115Salt MarshMNLFYEAKQVLDKDGKVNPLGPYGKMKLTGQEVASYFRKNKVSDPKVK
Ga0228685_103370923300023701SeawaterMNHFQPNIFQELKEKKVLDKDGKVDALGAYGKMKLTGQEIAAYFK
Ga0228684_107002013300023704SeawaterMNLFAEAKKVLDKDGKVNALGPYGKQKLTGREIQTYFRRNK
(restricted) Ga0233439_1047186313300024261SeawaterMNLFQEAKSVLDKDGKVNPLGPYGKQKLTGRETSAYFR
(restricted) Ga0233444_1047789013300024264SeawaterMNLFQEAKSVLDKDGKVNPLGPYGKQKLTGREISTYFRRNKITDPEIKKAVEVAL
Ga0228658_102398113300024297SeawaterMNLFHEAKKVLDKDGKVNPLGPYGKMKLTGQEVANYFRKNKVSDAKVKRAVEVALDM
Ga0209337_132313723300025168MarineMNLFHEAKKVLDKDGKVNPLGPYGKMKLTGQEVANYFRKNKVSDAKVKKAVEVALD
Ga0209306_120856313300025680Pelagic MarineMNLFAEAKKVLDKDGKVNPLGPYGKMKLTGREVSAYFRRNKITDP
Ga0209505_118457513300025690Pelagic MarineMNLFHEAKKVLDKDGKVNPLGPYGKMKLTGREVSTYFRRNKVSDPEVKKAV
Ga0209193_102166413300025816Pelagic MarineMNLFHEAKKVLDKDGKVNPLGPYGKMKLTGQEVANYFRKNKVSD
Ga0208678_103522413300027233EstuarineMNIFHEAKKVLDKDGKVNPLGPYGKQKLTGQEVASYFKK
Ga0208950_109362013300027413MarineMNLFHEAKKVLDKDGKVNPLGPYGKMKLTGREVSTYFRRNKVS
Ga0208971_106386923300027582MarineMNLFHEAKKVLDKDGKVNPLGPYGKMKLTGQEVANYFRKNNPYNGNXG
Ga0209228_103906613300027709MarineMNLFHEAKKILDKDGKVNALGPYAGSKLTGQEIASYFKKH
Ga0208305_1034682113300027753EstuarineMNLFYEAKKVLDKDGKVNALGPYGKQKLTGREIQVYFRRNKVKDKVIKKAVEVA
Ga0209091_1020208013300027801MarineMNLSTMNIFQEAKTILDKDGKVNPLGPFGKQKLTGREVSTYFRRNKITDPEIKKAVEVALDL
Ga0209092_10011356113300027833MarineMNLFAESKKVLDKDGKVNPLGPYGKQKLTGREISTYFRRNKITDPQIKKAVEV
Ga0209092_1036913523300027833MarineMTLSTMNIFQEAKAVLDKDGKVNPLGPYGKQKLTGREISTYFRRNKITDPEIKKAVE
Ga0209404_1001114433300027906MarineMNIWQDLKEKKVLDKDGKVDALGPYGKQKLTSAEISA
Ga0228649_115406533300028132SeawaterMNLFAEAKKVLDKDGKVNALGPYGKQKLTGREIQTYFR
Ga0256413_117226223300028282SeawaterMNLFHEAKKVLDKDGKVNPLGPYGKMKLTGQEVANYFRKN
Ga0228615_107824813300028418SeawaterMNLFHEAKKVLDKDGKVNPLGPYGKMKLTGQEVANYFRKNKVSDA
Ga0185543_102363853300029318MarineMNIFHESKKVLDKDGKVNPLGPYGKQKLTGSEISQYFK
Ga0315331_1094770123300031774SeawaterMHYQGNIFQELKEKKVLDKDGKVDALGPYGKMKLTGMEVNNY
Ga0315333_1026182313300032130SeawaterMNLFQEAKSILDKDGKVNALGPMGGAKLSGREISAYFRRH

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